AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025158


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025158.t1 MTR_6g053230 51.003 349 90 3 1 346 22 292 1.32e-101 310
MS.gene025158.t1 MTR_6g033215 37.306 193 120 1 5 197 103 294 7.53e-46 159
MS.gene025158.t1 MTR_3g024240 61.157 121 43 2 80 197 55 174 6.20e-44 150
MS.gene025158.t1 MTR_0010s0370 37.838 148 92 0 28 175 30 177 3.43e-29 112
MS.gene025158.t1 MTR_0010s0350 37.838 148 92 0 28 175 30 177 3.43e-29 112
MS.gene025158.t1 MTR_3g053920 35.971 139 85 2 1 135 1 139 2.10e-24 101
MS.gene025158.t1 MTR_2g061500 38.889 108 66 0 20 127 24 131 5.95e-22 91.3
MS.gene025158.t1 MTR_4g103530 38.202 89 55 0 55 143 5 93 2.76e-16 77.0
MS.gene025158.t1 MTR_8g468010 49.180 61 31 0 116 176 4 64 6.00e-16 74.7
MS.gene025158.t1 MTR_1g036720 44.286 70 39 0 30 99 32 101 1.65e-14 69.7
MS.gene025158.t1 MTR_6g053790 28.022 182 103 5 134 312 35 191 3.18e-12 67.4
MS.gene025158.t1 MTR_1g032270 35.526 76 49 0 96 171 1 76 3.99e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025158.t1 AT3G57587 24.312 218 145 6 22 227 23 232 3.04e-15 77.0
MS.gene025158.t1 AT2G41590 26.708 161 112 3 72 230 79 235 8.82e-14 72.4
MS.gene025158.t1 AT5G25200 24.684 158 113 3 72 227 79 232 1.49e-13 71.6
MS.gene025158.t1 AT2G02103 25.316 158 112 3 72 227 79 232 1.66e-13 72.0
MS.gene025158.t1 AT2G17920 23.232 198 150 1 30 227 37 232 5.05e-13 69.7
MS.gene025158.t1 AT5G18636 25.170 147 104 3 72 216 79 221 1.20e-12 68.9
MS.gene025158.t1 AT3G31430 30.723 166 105 6 51 213 153 311 1.63e-12 68.6

Find 0 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATGAAAGCAATTTTTA+TGG - 15163:17130-17149 MS.gene025158:CDS 20.0%
! AATTTCAATGTCAATCTCAA+TGG - 15163:16695-16714 MS.gene025158:CDS 25.0%
! AGAATGGTTACTAATATCAT+TGG - 15163:17607-17626 MS.gene025158:CDS 25.0%
! ATTCATGATTGAACTGAAAA+TGG + 15163:16904-16923 None:intergenic 25.0%
! TTAGTAGCAGTTAATTCAAA+AGG + 15163:17664-17683 None:intergenic 25.0%
!! ATTTTCAGTTCAATCATGAA+TGG - 15163:16903-16922 MS.gene025158:CDS 25.0%
!! TCACAATAATGTTGTTGTTA+TGG - 15163:17516-17535 MS.gene025158:CDS 25.0%
!! TTTTCAGTTCAATCATGAAT+GGG - 15163:16904-16923 MS.gene025158:CDS 25.0%
AAAAATCCATCAAAAGTCCA+AGG + 15163:16956-16975 None:intergenic 30.0%
ACTAATATCATTGGCCATAA+TGG - 15163:17616-17635 MS.gene025158:CDS 30.0%
ACTATTATGCAGTTAGTCAA+TGG - 15163:17700-17719 MS.gene025158:CDS 30.0%
AGGAAAGATTACCATCAATT+TGG - 15163:16831-16850 MS.gene025158:CDS 30.0%
ATGTCTCCTTCAAATATGAA+AGG - 15163:17251-17270 MS.gene025158:CDS 30.0%
TATTGTTGCTCCTAGTATTT+GGG + 15163:17735-17754 None:intergenic 30.0%
TCCTTCAAATATGAAAGGTT+GGG - 15163:17256-17275 MS.gene025158:CDS 30.0%
TTGGAAAGAGTTCTACAAAA+CGG - 15163:16929-16948 MS.gene025158:CDS 30.0%
! AAAGCAATTTTTATGGTCCT+TGG - 15163:17137-17156 MS.gene025158:CDS 30.0%
!! AGGATTTACTTTTCACAGAA+TGG - 15163:17591-17610 MS.gene025158:CDS 30.0%
AATATCATTGGCCATAATGG+AGG - 15163:17619-17638 MS.gene025158:CDS 35.0%
AATCTCAATGGTTCACCAAA+TGG - 15163:16707-16726 MS.gene025158:CDS 35.0%
AATGTATATGAGGATACAGG+TGG - 15163:17162-17181 MS.gene025158:CDS 35.0%
ACATTATTGTGATGTTCCTG+AGG + 15163:17508-17527 None:intergenic 35.0%
AGCAACAATAGCAACAATTC+AGG - 15163:17745-17764 MS.gene025158:CDS 35.0%
ATAATAGCTGGTAGTCAACA+AGG - 15163:17790-17809 MS.gene025158:CDS 35.0%
ATACTCGTTCATGTAACCAT+GGG + 15163:17068-17087 None:intergenic 35.0%
ATGCAGTTAGTCAATGGTAT+GGG - 15163:17706-17725 MS.gene025158:CDS 35.0%
CTATTGTTGCTCCTAGTATT+TGG + 15163:17736-17755 None:intergenic 35.0%
CTCCTTCAAATATGAAAGGT+TGG - 15163:17255-17274 MS.gene025158:CDS 35.0%
CTTCAATGAAGTTGAAGTCT+GGG - 15163:17024-17043 MS.gene025158:CDS 35.0%
GATTGAACTGAAAATGGAAC+CGG + 15163:16898-16917 None:intergenic 35.0%
GTAATGTTACAGTGAACAAG+TGG - 15163:17410-17429 MS.gene025158:CDS 35.0%
TATGCAGTTAGTCAATGGTA+TGG - 15163:17705-17724 MS.gene025158:CDS 35.0%
TCCCAACCTTTCATATTTGA+AGG + 15163:17260-17279 None:intergenic 35.0%
TCTTCAATGAAGTTGAAGTC+TGG - 15163:17023-17042 MS.gene025158:CDS 35.0%
TGCTTCATGTGATATTTCAG+AGG + 15163:16747-16766 None:intergenic 35.0%
!!! GACTTTTGATGGATTTTTGC+TGG - 15163:16958-16977 MS.gene025158:CDS 35.0%
AGTATGTTGGTATGCTCATG+GGG - 15163:17083-17102 MS.gene025158:CDS 40.0%
ATCCTCATATACATTCGCCA+AGG + 15163:17157-17176 None:intergenic 40.0%
CATACTCGTTCATGTAACCA+TGG + 15163:17069-17088 None:intergenic 40.0%
CTAGTTCCATCAACATAACC+TGG + 15163:17346-17365 None:intergenic 40.0%
CTTGAACCAGGTTATGTTGA+TGG - 15163:17337-17356 MS.gene025158:CDS 40.0%
GAGTATGTTGGTATGCTCAT+GGG - 15163:17082-17101 MS.gene025158:CDS 40.0%
GCGAATGTATATGAGGATAC+AGG - 15163:17159-17178 MS.gene025158:CDS 40.0%
GGTTACATGAACGAGTATGT+TGG - 15163:17070-17089 MS.gene025158:CDS 40.0%
GTAATCTTTCCTCCATGAAC+TGG + 15163:16823-16842 None:intergenic 40.0%
GTCCTTAAGAAGCTAGAGAT+AGG - 15163:16980-16999 MS.gene025158:CDS 40.0%
GTTCAATCATGAATGGGACT+TGG - 15163:16910-16929 MS.gene025158:CDS 40.0%
TACTCGTTCATGTAACCATG+GGG + 15163:17067-17086 None:intergenic 40.0%
TGATGGCATTAATGATCCTC+AGG - 15163:17489-17508 MS.gene025158:CDS 40.0%
TGCTACATCTGTGGCATAAT+GGG - 15163:17286-17305 MS.gene025158:CDS 40.0%
TTGCTACATCTGTGGCATAA+TGG - 15163:17285-17304 MS.gene025158:CDS 40.0%
! ATGTTGATGGAACTAGAGGA+TGG - 15163:17350-17369 MS.gene025158:CDS 40.0%
! CAGGTTTTTAATCTTCCCCA+TGG - 15163:17049-17068 MS.gene025158:CDS 40.0%
! GGTTATGTTGATGGAACTAG+AGG - 15163:17346-17365 MS.gene025158:CDS 40.0%
! TCAAGTGAGCATGCTTTGTT+TGG - 15163:17544-17563 MS.gene025158:CDS 40.0%
! TGTTGATGGAACTAGAGGAT+GGG - 15163:17351-17370 MS.gene025158:CDS 40.0%
!! CAAGTGAGCATGCTTTGTTT+GGG - 15163:17545-17564 MS.gene025158:CDS 40.0%
!! GGAGTATTTTGCTACATCTG+TGG - 15163:17277-17296 MS.gene025158:CDS 40.0%
AACCTGGTTCAAGTCTCCTT+GGG + 15163:17330-17349 None:intergenic 45.0%
AAGCATGGTGTTCGAGAAAG+AGG - 15163:17213-17232 MS.gene025158:CDS 45.0%
ACAGTGAACAAGTGGCTTAG+AGG - 15163:17418-17437 MS.gene025158:CDS 45.0%
ACTGCGAGAGGAATAATAGC+TGG - 15163:17778-17797 MS.gene025158:CDS 45.0%
ATGGTGTTCGAGAAAGAGGA+TGG - 15163:17217-17236 MS.gene025158:CDS 45.0%
CACCAAATGGATCCTCAACT+GGG - 15163:16720-16739 MS.gene025158:CDS 45.0%
CGAGTATGTTGGTATGCTCA+TGG - 15163:17081-17100 MS.gene025158:CDS 45.0%
CTGCTTGAACTCTGTGTTGT+AGG - 15163:16767-16786 MS.gene025158:CDS 45.0%
GAGTTCTACAAAACGGTCCT+TGG - 15163:16936-16955 MS.gene025158:CDS 45.0%
GTATGGGAGTCCCAAATACT+AGG - 15163:17722-17741 MS.gene025158:CDS 45.0%
GTCCTTGGCGAATGTATATG+AGG - 15163:17152-17171 MS.gene025158:CDS 45.0%
GTTCGAGAAAGAGGATGGTA+CGG - 15163:17222-17241 MS.gene025158:CDS 45.0%
TAACCTGGTTCAAGTCTCCT+TGG + 15163:17331-17350 None:intergenic 45.0%
TAAGAAGCTAGAGATAGGCG+AGG - 15163:16985-17004 MS.gene025158:CDS 45.0%
TATTTCAGAGGACCCAGTTG+AGG + 15163:16735-16754 None:intergenic 45.0%
TCACCAAATGGATCCTCAAC+TGG - 15163:16719-16738 MS.gene025158:CDS 45.0%
TGAACTGTTGAAGCGAAGCA+TGG - 15163:17198-17217 MS.gene025158:CDS 45.0%
TTACCATCAATTTGGCGACC+TGG - 15163:16839-16858 MS.gene025158:CDS 45.0%
TTTCCTCCATGAACTGGAAG+CGG + 15163:16817-16836 None:intergenic 45.0%
! AACGGTCCTTGGACTTTTGA+TGG - 15163:16947-16966 MS.gene025158:CDS 45.0%
! ATCATTGGCCATAATGGAGG+AGG - 15163:17622-17641 MS.gene025158:CDS 45.0%
! ATGCTCATGGGGTGTCATAT+TGG - 15163:17094-17113 MS.gene025158:CDS 45.0%
! CGCCTATCTCTAGCTTCTTA+AGG + 15163:16985-17004 None:intergenic 45.0%
! GTTGATGGAACTAGAGGATG+GGG - 15163:17352-17371 MS.gene025158:CDS 45.0%
ATCAATTTGGCGACCTGGTC+AGG - 15163:16844-16863 MS.gene025158:CDS 50.0%
ATCCTCCTCCGCGCAAAATT+CGG + 15163:17576-17595 None:intergenic 50.0%
GACCCAGTTGAGGATCCATT+TGG + 15163:16725-16744 None:intergenic 50.0%
GGGGTTACTATCACTCAAGC+TGG - 15163:16866-16885 MS.gene025158:CDS 50.0%
GTCCTTCACCTCCTCCATTA+TGG + 15163:17633-17652 None:intergenic 50.0%
GTGAACAAGTGGCTTAGAGG+AGG - 15163:17421-17440 MS.gene025158:CDS 50.0%
TATCCGCTTCCAGTTCATGG+AGG - 15163:16811-16830 MS.gene025158:CDS 50.0%
TCAATTTGGCGACCTGGTCA+GGG - 15163:16845-16864 MS.gene025158:CDS 50.0%
TCCATGAACTGGAAGCGGAT+AGG + 15163:16812-16831 None:intergenic 50.0%
TGAAGTTGAAGTCTGGGCTC+AGG - 15163:17030-17049 MS.gene025158:CDS 50.0%
TGACCAGGTCGCCAAATTGA+TGG + 15163:16845-16864 None:intergenic 50.0%
! TCATGGGGTGTCATATTGGC+AGG - 15163:17098-17117 MS.gene025158:CDS 50.0%
! TCTCCTTGGGCAGAAAGCAT+CGG + 15163:17317-17336 None:intergenic 50.0%
!! GGGGTCGTTTTCTGAATGCT+GGG - 15163:17371-17390 MS.gene025158:CDS 50.0%
!! GGGTCGTTTTCTGAATGCTG+GGG - 15163:17372-17391 MS.gene025158:CDS 50.0%
!! GGTCGTTTTCTGAATGCTGG+GGG - 15163:17373-17392 MS.gene025158:CDS 50.0%
!! TGGGGTCGTTTTCTGAATGC+TGG - 15163:17370-17389 MS.gene025158:CDS 50.0%
AATGCTGGGGGTCGCAATGT+TGG - 15163:17385-17404 MS.gene025158:CDS 55.0%
AATTTGGCGACCTGGTCAGG+GGG - 15163:16847-16866 MS.gene025158:CDS 55.0%
ACACCGATGCTTTCTGCCCA+AGG - 15163:17311-17330 MS.gene025158:CDS 55.0%
ATGGAGGAGGTGAAGGACAG+TGG - 15163:17635-17654 MS.gene025158:CDS 55.0%
CAATTTGGCGACCTGGTCAG+GGG - 15163:16846-16865 MS.gene025158:CDS 55.0%
GATAGGCGAGGCTATCTCTG+AGG - 15163:16997-17016 MS.gene025158:CDS 55.0%
GCCTATCCGCTTCCAGTTCA+TGG - 15163:16808-16827 MS.gene025158:CDS 55.0%
GCTTAGAGGAGGAAGAGTGG+CGG - 15163:17432-17451 MS.gene025158:CDS 55.0%
GTGATAGTAACCCCCTGACC+AGG + 15163:16860-16879 None:intergenic 55.0%
GTGGCTTAGAGGAGGAAGAG+TGG - 15163:17429-17448 MS.gene025158:CDS 55.0%
TCACTCAAGCTGGCGAGAAC+CGG - 15163:16876-16895 MS.gene025158:CDS 55.0%
TGCCCAAGGAGACTTGAACC+AGG - 15163:17325-17344 MS.gene025158:CDS 55.0%
TGGAGGAGGTGAAGGACAGT+GGG - 15163:17636-17655 MS.gene025158:CDS 55.0%
! GGCCATAATGGAGGAGGTGA+AGG - 15163:17628-17647 MS.gene025158:CDS 55.0%
GGCGTGACAGTTACTGCGAG+AGG - 15163:17766-17785 MS.gene025158:CDS 60.0%
! AGGCGAGGCTATCTCTGAGG+TGG - 15163:17000-17019 MS.gene025158:CDS 60.0%
! CGTGTCCGAATTTTGCGCGG+AGG - 15163:17568-17587 MS.gene025158:CDS 60.0%
! GGGCGTGTCCGAATTTTGCG+CGG - 15163:17565-17584 MS.gene025158:CDS 60.0%
! GTCCGAATTTTGCGCGGAGG+AGG - 15163:17571-17590 MS.gene025158:CDS 60.0%
GCTGGGGGTCGCAATGTTGG+CGG - 15163:17388-17407 MS.gene025158:CDS 65.0%
TGGAGGTCGTACGGGCGGTA+GGG - 15163:17459-17478 MS.gene025158:CDS 65.0%
! GGCGGTAGGGCAGGTTCTGA+TGG - 15163:17472-17491 MS.gene025158:CDS 65.0%
GCACGTGGAGGTCGTACGGG+CGG - 15163:17454-17473 MS.gene025158:CDS 70.0%
GCGGCACGTGGAGGTCGTAC+GGG - 15163:17451-17470 MS.gene025158:CDS 70.0%
GGAAGAGTGGCGGCACGTGG+AGG - 15163:17442-17461 MS.gene025158:CDS 70.0%
GGAGGAAGAGTGGCGGCACG+TGG - 15163:17439-17458 MS.gene025158:CDS 70.0%
GGCGGCACGTGGAGGTCGTA+CGG - 15163:17450-17469 MS.gene025158:CDS 70.0%
GTGGAGGTCGTACGGGCGGT+AGG - 15163:17458-17477 MS.gene025158:CDS 70.0%
GGTCGTACGGGCGGTAGGGC+AGG - 15163:17463-17482 MS.gene025158:CDS 75.0%


Chromosome Type Strat End Strand Name
15163 gene 16689 17842 16689 ID=MS.gene025158
15163 mRNA 16689 17842 16689 ID=MS.gene025158.t1;Parent=MS.gene025158
15163 exon 16689 17842 16689 ID=MS.gene025158.t1.exon1;Parent=MS.gene025158.t1
15163 CDS 16689 17842 16689 ID=cds.MS.gene025158.t1;Parent=MS.gene025158.t1
Gene Sequence

>MS.gene025158

ATGGAAAATTTCAATGTCAATCTCAATGGTTCACCAAATGGATCCTCAACTGGGTCCTCTGAAATATCACATGAAGCACTGCTTGAACTCTGTGTTGTAGGCACAGTGCTCACTGACAAGCCTATCCGCTTCCAGTTCATGGAGGAAAGATTACCATCAATTTGGCGACCTGGTCAGGGGGTTACTATCACTCAAGCTGGCGAGAACCGGTTCCATTTTCAGTTCAATCATGAATGGGACTTGGAAAGAGTTCTACAAAACGGTCCTTGGACTTTTGATGGATTTTTGCTGGTCCTTAAGAAGCTAGAGATAGGCGAGGCTATCTCTGAGGTGGTCTTCAATGAAGTTGAAGTCTGGGCTCAGGTTTTTAATCTTCCCCATGGTTACATGAACGAGTATGTTGGTATGCTCATGGGGTGTCATATTGGCAGGTTTGTTCATTTTGATGAAAGCAATTTTTATGGTCCTTGGCGAATGTATATGAGGATACAGGTGGCTCTCAACATTGCTGAACTGTTGAAGCGAAGCATGGTGTTCGAGAAAGAGGATGGTACGGCTGTTCATGTCTCCTTCAAATATGAAAGGTTGGGAGTATTTTGCTACATCTGTGGCATAATGGGACACACCGATGCTTTCTGCCCAAGGAGACTTGAACCAGGTTATGTTGATGGAACTAGAGGATGGGGTCGTTTTCTGAATGCTGGGGGTCGCAATGTTGGCGGTAATGTTACAGTGAACAAGTGGCTTAGAGGAGGAAGAGTGGCGGCACGTGGAGGTCGTACGGGCGGTAGGGCAGGTTCTGATGGCATTAATGATCCTCAGGAACATCACAATAATGTTGTTGTTATGGCGCAATCAAGTGAGCATGCTTTGTTTGGGCGTGTCCGAATTTTGCGCGGAGGAGGATTTACTTTTCACAGAATGGTTACTAATATCATTGGCCATAATGGAGGAGGTGAAGGACAGTGGGTTCCTTTTGAATTAACTGCTACTAACATAGCTAATCAAATAACTATTATGCAGTTAGTCAATGGTATGGGAGTCCCAAATACTAGGAGCAACAATAGCAACAATTCAGGCGTGACAGTTACTGCGAGAGGAATAATAGCTGGTAGTCAACAAGGAGCAGCTGTTCTGACAGAGAATGAGTTGCA

Protein sequence

>MS.gene025158.t1

MENFNVNLNGSPNGSSTGSSEISHEALLELCVVGTVLTDKPIRFQFMEERLPSIWRPGQGVTITQAGENRFHFQFNHEWDLERVLQNGPWTFDGFLLVLKKLEIGEAISEVVFNEVEVWAQVFNLPHGYMNEYVGMLMGCHIGRFVHFDESNFYGPWRMYMRIQVALNIAELLKRSMVFEKEDGTAVHVSFKYERLGVFCYICGIMGHTDAFCPRRLEPGYVDGTRGWGRFLNAGGRNVGGNVTVNKWLRGGRVAARGGRTGGRAGSDGINDPQEHHNNVVVMAQSSEHALFGRVRILRGGGFTFHRMVTNIIGHNGGGEGQWVPFELTATNIANQITIMQLVNGMGVPNTRSNNSNNSGVTVTARGIIAGSQQGAAVLTENEL