Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025158.t1 | GAU15155.1 | 46.4 | 351 | 174 | 6 | 27 | 368 | 26 | 371 | 5.80E-85 | 324.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025158.t1 | A0A2Z6MY32 | 41.6 | 404 | 203 | 8 | 1 | 379 | 1 | 396 | 2.1e-84 | 322.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025158.t1 | MTR_6g053230 | 51.003 | 349 | 90 | 3 | 1 | 346 | 22 | 292 | 1.32e-101 | 310 |
| MS.gene025158.t1 | MTR_6g033215 | 37.306 | 193 | 120 | 1 | 5 | 197 | 103 | 294 | 7.53e-46 | 159 |
| MS.gene025158.t1 | MTR_3g024240 | 61.157 | 121 | 43 | 2 | 80 | 197 | 55 | 174 | 6.20e-44 | 150 |
| MS.gene025158.t1 | MTR_0010s0370 | 37.838 | 148 | 92 | 0 | 28 | 175 | 30 | 177 | 3.43e-29 | 112 |
| MS.gene025158.t1 | MTR_0010s0350 | 37.838 | 148 | 92 | 0 | 28 | 175 | 30 | 177 | 3.43e-29 | 112 |
| MS.gene025158.t1 | MTR_3g053920 | 35.971 | 139 | 85 | 2 | 1 | 135 | 1 | 139 | 2.10e-24 | 101 |
| MS.gene025158.t1 | MTR_2g061500 | 38.889 | 108 | 66 | 0 | 20 | 127 | 24 | 131 | 5.95e-22 | 91.3 |
| MS.gene025158.t1 | MTR_4g103530 | 38.202 | 89 | 55 | 0 | 55 | 143 | 5 | 93 | 2.76e-16 | 77.0 |
| MS.gene025158.t1 | MTR_8g468010 | 49.180 | 61 | 31 | 0 | 116 | 176 | 4 | 64 | 6.00e-16 | 74.7 |
| MS.gene025158.t1 | MTR_1g036720 | 44.286 | 70 | 39 | 0 | 30 | 99 | 32 | 101 | 1.65e-14 | 69.7 |
| MS.gene025158.t1 | MTR_6g053790 | 28.022 | 182 | 103 | 5 | 134 | 312 | 35 | 191 | 3.18e-12 | 67.4 |
| MS.gene025158.t1 | MTR_1g032270 | 35.526 | 76 | 49 | 0 | 96 | 171 | 1 | 76 | 3.99e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025158.t1 | AT3G57587 | 24.312 | 218 | 145 | 6 | 22 | 227 | 23 | 232 | 3.04e-15 | 77.0 |
| MS.gene025158.t1 | AT2G41590 | 26.708 | 161 | 112 | 3 | 72 | 230 | 79 | 235 | 8.82e-14 | 72.4 |
| MS.gene025158.t1 | AT5G25200 | 24.684 | 158 | 113 | 3 | 72 | 227 | 79 | 232 | 1.49e-13 | 71.6 |
| MS.gene025158.t1 | AT2G02103 | 25.316 | 158 | 112 | 3 | 72 | 227 | 79 | 232 | 1.66e-13 | 72.0 |
| MS.gene025158.t1 | AT2G17920 | 23.232 | 198 | 150 | 1 | 30 | 227 | 37 | 232 | 5.05e-13 | 69.7 |
| MS.gene025158.t1 | AT5G18636 | 25.170 | 147 | 104 | 3 | 72 | 216 | 79 | 221 | 1.20e-12 | 68.9 |
| MS.gene025158.t1 | AT3G31430 | 30.723 | 166 | 105 | 6 | 51 | 213 | 153 | 311 | 1.63e-12 | 68.6 |
Find 0 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATGAAAGCAATTTTTA+TGG | - | 15163:17130-17149 | MS.gene025158:CDS | 20.0% |
| ! | AATTTCAATGTCAATCTCAA+TGG | - | 15163:16695-16714 | MS.gene025158:CDS | 25.0% |
| ! | AGAATGGTTACTAATATCAT+TGG | - | 15163:17607-17626 | MS.gene025158:CDS | 25.0% |
| ! | ATTCATGATTGAACTGAAAA+TGG | + | 15163:16904-16923 | None:intergenic | 25.0% |
| ! | TTAGTAGCAGTTAATTCAAA+AGG | + | 15163:17664-17683 | None:intergenic | 25.0% |
| !! | ATTTTCAGTTCAATCATGAA+TGG | - | 15163:16903-16922 | MS.gene025158:CDS | 25.0% |
| !! | TCACAATAATGTTGTTGTTA+TGG | - | 15163:17516-17535 | MS.gene025158:CDS | 25.0% |
| !! | TTTTCAGTTCAATCATGAAT+GGG | - | 15163:16904-16923 | MS.gene025158:CDS | 25.0% |
| AAAAATCCATCAAAAGTCCA+AGG | + | 15163:16956-16975 | None:intergenic | 30.0% | |
| ACTAATATCATTGGCCATAA+TGG | - | 15163:17616-17635 | MS.gene025158:CDS | 30.0% | |
| ACTATTATGCAGTTAGTCAA+TGG | - | 15163:17700-17719 | MS.gene025158:CDS | 30.0% | |
| AGGAAAGATTACCATCAATT+TGG | - | 15163:16831-16850 | MS.gene025158:CDS | 30.0% | |
| ATGTCTCCTTCAAATATGAA+AGG | - | 15163:17251-17270 | MS.gene025158:CDS | 30.0% | |
| TATTGTTGCTCCTAGTATTT+GGG | + | 15163:17735-17754 | None:intergenic | 30.0% | |
| TCCTTCAAATATGAAAGGTT+GGG | - | 15163:17256-17275 | MS.gene025158:CDS | 30.0% | |
| TTGGAAAGAGTTCTACAAAA+CGG | - | 15163:16929-16948 | MS.gene025158:CDS | 30.0% | |
| ! | AAAGCAATTTTTATGGTCCT+TGG | - | 15163:17137-17156 | MS.gene025158:CDS | 30.0% |
| !! | AGGATTTACTTTTCACAGAA+TGG | - | 15163:17591-17610 | MS.gene025158:CDS | 30.0% |
| AATATCATTGGCCATAATGG+AGG | - | 15163:17619-17638 | MS.gene025158:CDS | 35.0% | |
| AATCTCAATGGTTCACCAAA+TGG | - | 15163:16707-16726 | MS.gene025158:CDS | 35.0% | |
| AATGTATATGAGGATACAGG+TGG | - | 15163:17162-17181 | MS.gene025158:CDS | 35.0% | |
| ACATTATTGTGATGTTCCTG+AGG | + | 15163:17508-17527 | None:intergenic | 35.0% | |
| AGCAACAATAGCAACAATTC+AGG | - | 15163:17745-17764 | MS.gene025158:CDS | 35.0% | |
| ATAATAGCTGGTAGTCAACA+AGG | - | 15163:17790-17809 | MS.gene025158:CDS | 35.0% | |
| ATACTCGTTCATGTAACCAT+GGG | + | 15163:17068-17087 | None:intergenic | 35.0% | |
| ATGCAGTTAGTCAATGGTAT+GGG | - | 15163:17706-17725 | MS.gene025158:CDS | 35.0% | |
| CTATTGTTGCTCCTAGTATT+TGG | + | 15163:17736-17755 | None:intergenic | 35.0% | |
| CTCCTTCAAATATGAAAGGT+TGG | - | 15163:17255-17274 | MS.gene025158:CDS | 35.0% | |
| CTTCAATGAAGTTGAAGTCT+GGG | - | 15163:17024-17043 | MS.gene025158:CDS | 35.0% | |
| GATTGAACTGAAAATGGAAC+CGG | + | 15163:16898-16917 | None:intergenic | 35.0% | |
| GTAATGTTACAGTGAACAAG+TGG | - | 15163:17410-17429 | MS.gene025158:CDS | 35.0% | |
| TATGCAGTTAGTCAATGGTA+TGG | - | 15163:17705-17724 | MS.gene025158:CDS | 35.0% | |
| TCCCAACCTTTCATATTTGA+AGG | + | 15163:17260-17279 | None:intergenic | 35.0% | |
| TCTTCAATGAAGTTGAAGTC+TGG | - | 15163:17023-17042 | MS.gene025158:CDS | 35.0% | |
| TGCTTCATGTGATATTTCAG+AGG | + | 15163:16747-16766 | None:intergenic | 35.0% | |
| !!! | GACTTTTGATGGATTTTTGC+TGG | - | 15163:16958-16977 | MS.gene025158:CDS | 35.0% |
| AGTATGTTGGTATGCTCATG+GGG | - | 15163:17083-17102 | MS.gene025158:CDS | 40.0% | |
| ATCCTCATATACATTCGCCA+AGG | + | 15163:17157-17176 | None:intergenic | 40.0% | |
| CATACTCGTTCATGTAACCA+TGG | + | 15163:17069-17088 | None:intergenic | 40.0% | |
| CTAGTTCCATCAACATAACC+TGG | + | 15163:17346-17365 | None:intergenic | 40.0% | |
| CTTGAACCAGGTTATGTTGA+TGG | - | 15163:17337-17356 | MS.gene025158:CDS | 40.0% | |
| GAGTATGTTGGTATGCTCAT+GGG | - | 15163:17082-17101 | MS.gene025158:CDS | 40.0% | |
| GCGAATGTATATGAGGATAC+AGG | - | 15163:17159-17178 | MS.gene025158:CDS | 40.0% | |
| GGTTACATGAACGAGTATGT+TGG | - | 15163:17070-17089 | MS.gene025158:CDS | 40.0% | |
| GTAATCTTTCCTCCATGAAC+TGG | + | 15163:16823-16842 | None:intergenic | 40.0% | |
| GTCCTTAAGAAGCTAGAGAT+AGG | - | 15163:16980-16999 | MS.gene025158:CDS | 40.0% | |
| GTTCAATCATGAATGGGACT+TGG | - | 15163:16910-16929 | MS.gene025158:CDS | 40.0% | |
| TACTCGTTCATGTAACCATG+GGG | + | 15163:17067-17086 | None:intergenic | 40.0% | |
| TGATGGCATTAATGATCCTC+AGG | - | 15163:17489-17508 | MS.gene025158:CDS | 40.0% | |
| TGCTACATCTGTGGCATAAT+GGG | - | 15163:17286-17305 | MS.gene025158:CDS | 40.0% | |
| TTGCTACATCTGTGGCATAA+TGG | - | 15163:17285-17304 | MS.gene025158:CDS | 40.0% | |
| ! | ATGTTGATGGAACTAGAGGA+TGG | - | 15163:17350-17369 | MS.gene025158:CDS | 40.0% |
| ! | CAGGTTTTTAATCTTCCCCA+TGG | - | 15163:17049-17068 | MS.gene025158:CDS | 40.0% |
| ! | GGTTATGTTGATGGAACTAG+AGG | - | 15163:17346-17365 | MS.gene025158:CDS | 40.0% |
| ! | TCAAGTGAGCATGCTTTGTT+TGG | - | 15163:17544-17563 | MS.gene025158:CDS | 40.0% |
| ! | TGTTGATGGAACTAGAGGAT+GGG | - | 15163:17351-17370 | MS.gene025158:CDS | 40.0% |
| !! | CAAGTGAGCATGCTTTGTTT+GGG | - | 15163:17545-17564 | MS.gene025158:CDS | 40.0% |
| !! | GGAGTATTTTGCTACATCTG+TGG | - | 15163:17277-17296 | MS.gene025158:CDS | 40.0% |
| AACCTGGTTCAAGTCTCCTT+GGG | + | 15163:17330-17349 | None:intergenic | 45.0% | |
| AAGCATGGTGTTCGAGAAAG+AGG | - | 15163:17213-17232 | MS.gene025158:CDS | 45.0% | |
| ACAGTGAACAAGTGGCTTAG+AGG | - | 15163:17418-17437 | MS.gene025158:CDS | 45.0% | |
| ACTGCGAGAGGAATAATAGC+TGG | - | 15163:17778-17797 | MS.gene025158:CDS | 45.0% | |
| ATGGTGTTCGAGAAAGAGGA+TGG | - | 15163:17217-17236 | MS.gene025158:CDS | 45.0% | |
| CACCAAATGGATCCTCAACT+GGG | - | 15163:16720-16739 | MS.gene025158:CDS | 45.0% | |
| CGAGTATGTTGGTATGCTCA+TGG | - | 15163:17081-17100 | MS.gene025158:CDS | 45.0% | |
| CTGCTTGAACTCTGTGTTGT+AGG | - | 15163:16767-16786 | MS.gene025158:CDS | 45.0% | |
| GAGTTCTACAAAACGGTCCT+TGG | - | 15163:16936-16955 | MS.gene025158:CDS | 45.0% | |
| GTATGGGAGTCCCAAATACT+AGG | - | 15163:17722-17741 | MS.gene025158:CDS | 45.0% | |
| GTCCTTGGCGAATGTATATG+AGG | - | 15163:17152-17171 | MS.gene025158:CDS | 45.0% | |
| GTTCGAGAAAGAGGATGGTA+CGG | - | 15163:17222-17241 | MS.gene025158:CDS | 45.0% | |
| TAACCTGGTTCAAGTCTCCT+TGG | + | 15163:17331-17350 | None:intergenic | 45.0% | |
| TAAGAAGCTAGAGATAGGCG+AGG | - | 15163:16985-17004 | MS.gene025158:CDS | 45.0% | |
| TATTTCAGAGGACCCAGTTG+AGG | + | 15163:16735-16754 | None:intergenic | 45.0% | |
| TCACCAAATGGATCCTCAAC+TGG | - | 15163:16719-16738 | MS.gene025158:CDS | 45.0% | |
| TGAACTGTTGAAGCGAAGCA+TGG | - | 15163:17198-17217 | MS.gene025158:CDS | 45.0% | |
| TTACCATCAATTTGGCGACC+TGG | - | 15163:16839-16858 | MS.gene025158:CDS | 45.0% | |
| TTTCCTCCATGAACTGGAAG+CGG | + | 15163:16817-16836 | None:intergenic | 45.0% | |
| ! | AACGGTCCTTGGACTTTTGA+TGG | - | 15163:16947-16966 | MS.gene025158:CDS | 45.0% |
| ! | ATCATTGGCCATAATGGAGG+AGG | - | 15163:17622-17641 | MS.gene025158:CDS | 45.0% |
| ! | ATGCTCATGGGGTGTCATAT+TGG | - | 15163:17094-17113 | MS.gene025158:CDS | 45.0% |
| ! | CGCCTATCTCTAGCTTCTTA+AGG | + | 15163:16985-17004 | None:intergenic | 45.0% |
| ! | GTTGATGGAACTAGAGGATG+GGG | - | 15163:17352-17371 | MS.gene025158:CDS | 45.0% |
| ATCAATTTGGCGACCTGGTC+AGG | - | 15163:16844-16863 | MS.gene025158:CDS | 50.0% | |
| ATCCTCCTCCGCGCAAAATT+CGG | + | 15163:17576-17595 | None:intergenic | 50.0% | |
| GACCCAGTTGAGGATCCATT+TGG | + | 15163:16725-16744 | None:intergenic | 50.0% | |
| GGGGTTACTATCACTCAAGC+TGG | - | 15163:16866-16885 | MS.gene025158:CDS | 50.0% | |
| GTCCTTCACCTCCTCCATTA+TGG | + | 15163:17633-17652 | None:intergenic | 50.0% | |
| GTGAACAAGTGGCTTAGAGG+AGG | - | 15163:17421-17440 | MS.gene025158:CDS | 50.0% | |
| TATCCGCTTCCAGTTCATGG+AGG | - | 15163:16811-16830 | MS.gene025158:CDS | 50.0% | |
| TCAATTTGGCGACCTGGTCA+GGG | - | 15163:16845-16864 | MS.gene025158:CDS | 50.0% | |
| TCCATGAACTGGAAGCGGAT+AGG | + | 15163:16812-16831 | None:intergenic | 50.0% | |
| TGAAGTTGAAGTCTGGGCTC+AGG | - | 15163:17030-17049 | MS.gene025158:CDS | 50.0% | |
| TGACCAGGTCGCCAAATTGA+TGG | + | 15163:16845-16864 | None:intergenic | 50.0% | |
| ! | TCATGGGGTGTCATATTGGC+AGG | - | 15163:17098-17117 | MS.gene025158:CDS | 50.0% |
| ! | TCTCCTTGGGCAGAAAGCAT+CGG | + | 15163:17317-17336 | None:intergenic | 50.0% |
| !! | GGGGTCGTTTTCTGAATGCT+GGG | - | 15163:17371-17390 | MS.gene025158:CDS | 50.0% |
| !! | GGGTCGTTTTCTGAATGCTG+GGG | - | 15163:17372-17391 | MS.gene025158:CDS | 50.0% |
| !! | GGTCGTTTTCTGAATGCTGG+GGG | - | 15163:17373-17392 | MS.gene025158:CDS | 50.0% |
| !! | TGGGGTCGTTTTCTGAATGC+TGG | - | 15163:17370-17389 | MS.gene025158:CDS | 50.0% |
| AATGCTGGGGGTCGCAATGT+TGG | - | 15163:17385-17404 | MS.gene025158:CDS | 55.0% | |
| AATTTGGCGACCTGGTCAGG+GGG | - | 15163:16847-16866 | MS.gene025158:CDS | 55.0% | |
| ACACCGATGCTTTCTGCCCA+AGG | - | 15163:17311-17330 | MS.gene025158:CDS | 55.0% | |
| ATGGAGGAGGTGAAGGACAG+TGG | - | 15163:17635-17654 | MS.gene025158:CDS | 55.0% | |
| CAATTTGGCGACCTGGTCAG+GGG | - | 15163:16846-16865 | MS.gene025158:CDS | 55.0% | |
| GATAGGCGAGGCTATCTCTG+AGG | - | 15163:16997-17016 | MS.gene025158:CDS | 55.0% | |
| GCCTATCCGCTTCCAGTTCA+TGG | - | 15163:16808-16827 | MS.gene025158:CDS | 55.0% | |
| GCTTAGAGGAGGAAGAGTGG+CGG | - | 15163:17432-17451 | MS.gene025158:CDS | 55.0% | |
| GTGATAGTAACCCCCTGACC+AGG | + | 15163:16860-16879 | None:intergenic | 55.0% | |
| GTGGCTTAGAGGAGGAAGAG+TGG | - | 15163:17429-17448 | MS.gene025158:CDS | 55.0% | |
| TCACTCAAGCTGGCGAGAAC+CGG | - | 15163:16876-16895 | MS.gene025158:CDS | 55.0% | |
| TGCCCAAGGAGACTTGAACC+AGG | - | 15163:17325-17344 | MS.gene025158:CDS | 55.0% | |
| TGGAGGAGGTGAAGGACAGT+GGG | - | 15163:17636-17655 | MS.gene025158:CDS | 55.0% | |
| ! | GGCCATAATGGAGGAGGTGA+AGG | - | 15163:17628-17647 | MS.gene025158:CDS | 55.0% |
| GGCGTGACAGTTACTGCGAG+AGG | - | 15163:17766-17785 | MS.gene025158:CDS | 60.0% | |
| ! | AGGCGAGGCTATCTCTGAGG+TGG | - | 15163:17000-17019 | MS.gene025158:CDS | 60.0% |
| ! | CGTGTCCGAATTTTGCGCGG+AGG | - | 15163:17568-17587 | MS.gene025158:CDS | 60.0% |
| ! | GGGCGTGTCCGAATTTTGCG+CGG | - | 15163:17565-17584 | MS.gene025158:CDS | 60.0% |
| ! | GTCCGAATTTTGCGCGGAGG+AGG | - | 15163:17571-17590 | MS.gene025158:CDS | 60.0% |
| GCTGGGGGTCGCAATGTTGG+CGG | - | 15163:17388-17407 | MS.gene025158:CDS | 65.0% | |
| TGGAGGTCGTACGGGCGGTA+GGG | - | 15163:17459-17478 | MS.gene025158:CDS | 65.0% | |
| ! | GGCGGTAGGGCAGGTTCTGA+TGG | - | 15163:17472-17491 | MS.gene025158:CDS | 65.0% |
| GCACGTGGAGGTCGTACGGG+CGG | - | 15163:17454-17473 | MS.gene025158:CDS | 70.0% | |
| GCGGCACGTGGAGGTCGTAC+GGG | - | 15163:17451-17470 | MS.gene025158:CDS | 70.0% | |
| GGAAGAGTGGCGGCACGTGG+AGG | - | 15163:17442-17461 | MS.gene025158:CDS | 70.0% | |
| GGAGGAAGAGTGGCGGCACG+TGG | - | 15163:17439-17458 | MS.gene025158:CDS | 70.0% | |
| GGCGGCACGTGGAGGTCGTA+CGG | - | 15163:17450-17469 | MS.gene025158:CDS | 70.0% | |
| GTGGAGGTCGTACGGGCGGT+AGG | - | 15163:17458-17477 | MS.gene025158:CDS | 70.0% | |
| GGTCGTACGGGCGGTAGGGC+AGG | - | 15163:17463-17482 | MS.gene025158:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15163 | gene | 16689 | 17842 | 16689 | ID=MS.gene025158 |
| 15163 | mRNA | 16689 | 17842 | 16689 | ID=MS.gene025158.t1;Parent=MS.gene025158 |
| 15163 | exon | 16689 | 17842 | 16689 | ID=MS.gene025158.t1.exon1;Parent=MS.gene025158.t1 |
| 15163 | CDS | 16689 | 17842 | 16689 | ID=cds.MS.gene025158.t1;Parent=MS.gene025158.t1 |
| Gene Sequence |
| Protein sequence |