AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52349

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52349.t1 MTR_6g033215 40.854 164 97 0 109 272 131 294 6.08e-45 161
MS.gene52349.t1 MTR_0010s0370 39.286 140 85 0 109 248 36 175 6.96e-34 127
MS.gene52349.t1 MTR_0010s0350 39.286 140 85 0 109 248 36 175 6.96e-34 127
MS.gene52349.t1 MTR_3g053920 35.333 150 78 3 97 244 24 156 8.56e-24 102
MS.gene52349.t1 MTR_3g024240 38.843 121 72 1 155 273 55 175 3.11e-23 97.8
MS.gene52349.t1 MTR_2g061500 34.677 124 81 0 77 200 6 129 1.33e-22 94.4
MS.gene52349.t1 MTR_6g053230 34.228 149 62 1 109 257 55 167 8.10e-22 99.4
MS.gene52349.t1 MTR_4g020545 28.571 217 96 6 134 343 79 243 9.89e-20 90.5
MS.gene52349.t1 MTR_8g468010 54.688 64 29 0 188 251 1 64 9.32e-19 83.6
MS.gene52349.t1 MTR_4g103530 38.710 93 57 0 126 218 1 93 1.82e-18 84.3
MS.gene52349.t1 MTR_1g032270 45.070 71 39 0 172 242 2 72 1.46e-17 80.1
MS.gene52349.t1 MTR_7g011710 32.743 113 73 2 126 236 1 112 4.98e-16 76.3
MS.gene52349.t1 MTR_1g036720 42.029 69 40 0 106 174 33 101 3.51e-15 72.4
MS.gene52349.t1 MTR_7g089990 34.259 108 69 1 177 282 86 193 9.83e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52349.t1 AT2G17920 28.477 151 106 1 141 291 73 221 2.11e-18 86.7
MS.gene52349.t1 AT3G57587 26.490 151 109 1 141 291 73 221 3.69e-16 80.9
MS.gene52349.t1 AT5G18636 24.865 185 132 2 112 291 39 221 3.75e-15 77.8
MS.gene52349.t1 AT5G25200 24.865 185 132 2 112 291 39 221 4.18e-15 77.8
MS.gene52349.t1 AT2G41590 24.865 185 132 2 112 291 39 221 4.21e-15 77.8
MS.gene52349.t1 AT2G02103 24.865 185 132 2 112 291 39 221 9.80e-15 77.0
MS.gene52349.t1 AT3G31430 25.556 180 130 1 109 288 136 311 3.55e-14 74.7
MS.gene52349.t1 AT3G47920 24.503 151 112 1 141 291 2 150 7.03e-13 70.1
MS.gene52349.t1 AT5G36228 26.846 149 107 1 141 289 73 219 7.65e-13 70.9

Find 180 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTCTTCTTCAGGTTTC+AGG 0.127402 3.1:+60535710 MS.gene52349:CDS
TTTGAGTTGCTTAGGTTCTT+TGG 0.228089 3.1:-60537471 None:intergenic
CAGAGAACAACTTTGGTTCT+TGG 0.242370 3.1:+60536670 MS.gene52349:CDS
TCGCAGTACTCTTGCAATTA+AGG 0.247486 3.1:+60535678 MS.gene52349:CDS
GGATGTTGTTATGAGGGATA+TGG 0.266288 3.1:+60537598 MS.gene52349:CDS
ATGGCTATTATTTCTTCTTC+AGG 0.279441 3.1:+60535703 MS.gene52349:CDS
GGCTTGTTGAACCCGAGTTT+GGG 0.309378 3.1:+60538427 MS.gene52349:CDS
TGGCTTGTTGAACCCGAGTT+TGG 0.310964 3.1:+60538426 MS.gene52349:CDS
GGTGAAGATTGGGAGGGATT+TGG 0.316466 3.1:+60537064 MS.gene52349:CDS
TCTTTCAATCATGCTAAGTT+TGG 0.317064 3.1:+60537038 MS.gene52349:CDS
GAATCGATGGGTATTCTTCT+AGG 0.331455 3.1:+60536615 MS.gene52349:CDS
TACTCTTGCAATTAAGGATA+TGG 0.334859 3.1:+60535684 MS.gene52349:CDS
CGAATTAAAGTGAACTGGTT+TGG 0.341901 3.1:-60536337 None:intergenic
CCGCAGCCTGCGCCTAGTTC+CGG 0.346983 3.1:+60538375 MS.gene52349:CDS
CAAGCTCACAACCTTCCCTT+TGG 0.348198 3.1:+60536582 MS.gene52349:CDS
GTTATGAGGGATATGGGATT+AGG 0.352253 3.1:+60537605 MS.gene52349:CDS
AGCGGCAGTAGAAACAAAAT+TGG 0.363774 3.1:-60537336 None:intergenic
TCTTCAATAAAACACCTTGC+TGG 0.369954 3.1:-60537143 None:intergenic
CTACCATGCATCACTGTTCC+AGG 0.376748 3.1:-60535814 None:intergenic
GTGATCGCATGGCTCAAGTT+TGG 0.380325 3.1:+60536364 MS.gene52349:CDS
TTCAGATTTAACGACATCAT+TGG 0.383323 3.1:+60537373 MS.gene52349:CDS
GTTTCAGTTCTTTCATCATA+AGG 0.386843 3.1:+60536437 MS.gene52349:CDS
GATGTCGTTAAATCTGAAAT+AGG 0.400227 3.1:-60537368 None:intergenic
TAGGAGTGTAGATAGTATAA+AGG 0.402657 3.1:+60535597 MS.gene52349:CDS
TCAGCTGCACCAATACTTTG+TGG 0.404395 3.1:-60537236 None:intergenic
TGTTATGTTTGCGGCAGGTT+GGG 0.409593 3.1:+60536819 MS.gene52349:CDS
AGAACCTCTTGTGGCGAGTT+GGG 0.410584 3.1:+60536731 MS.gene52349:CDS
TTGTTAGCAAGCTGCAGAAC+TGG 0.416041 3.1:-60537206 None:intergenic
TCAAGCTTGTGAATGGTACT+TGG 0.420575 3.1:+60537108 MS.gene52349:CDS
TATTCTTCGTGCTGAATTCA+AGG 0.423524 3.1:+60536911 MS.gene52349:CDS
TTCTAGGCAATCACGTTGGT+GGG 0.425308 3.1:+60536631 MS.gene52349:CDS
TGTTGAAGAAGGCAAGCGTT+GGG 0.430415 3.1:+60536884 MS.gene52349:CDS
AAGTTTGGTCGGGTGAAGAT+TGG 0.430477 3.1:+60537053 MS.gene52349:CDS
GCCTAGCTTCTTGAACCAAT+CGG 0.433556 3.1:-60537280 None:intergenic
TTGTTATGTTTGCGGCAGGT+TGG 0.435345 3.1:+60536818 MS.gene52349:CDS
GCTTGGAGGGATGGCAGCTA+GGG 0.442248 3.1:+60535630 MS.gene52349:CDS
CGAAACGAATTAAAGTGAAC+TGG 0.442462 3.1:-60536342 None:intergenic
AGCTTGGAGGGATGGCAGCT+AGG 0.444258 3.1:+60535629 MS.gene52349:CDS
GTGACGCTATACCAACTTGT+AGG 0.449539 3.1:+60535578 MS.gene52349:CDS
GTGCCATCATCACTAACTTT+CGG 0.451441 3.1:-60537434 None:intergenic
GTGGTGTCATGTTCTCAGTT+TGG 0.452133 3.1:+60535527 MS.gene52349:CDS
GATGTTGTTATGAGGGATAT+GGG 0.453251 3.1:+60537599 MS.gene52349:CDS
CTCGCAAGGATGTTGTTATG+AGG 0.453679 3.1:+60537591 MS.gene52349:CDS
ATGCTGAAGGTTGGCCTAAG+TGG 0.459601 3.1:+60537401 MS.gene52349:CDS
AGTTTGGTCGGGTGAAGATT+GGG 0.459931 3.1:+60537054 MS.gene52349:CDS
AAATCGAAATCGACGTTGGC+CGG 0.459955 3.1:-60538394 None:intergenic
TAGTGATTGTTTCGAATGAT+TGG 0.465134 3.1:+60535505 None:intergenic
TGGTGCGATGCATGATGGTA+TGG 0.471008 3.1:+60537001 MS.gene52349:CDS
CTCCGTGTTGCTCTGAAGGT+TGG 0.472674 3.1:+60536708 MS.gene52349:CDS
GCGTCTCCGTGTTGCTCTGA+AGG 0.474496 3.1:+60536704 MS.gene52349:CDS
GAGATTTCAACCTTACGTTC+AGG 0.474706 3.1:-60536390 None:intergenic
GGAGCAGTGTTACAAGTTGT+TGG 0.477595 3.1:-60537185 None:intergenic
AATCGACGTTGGCCGGAACT+AGG 0.478140 3.1:-60538387 None:intergenic
TTGAATTCAGCACGAAGAAT+AGG 0.480103 3.1:-60536909 None:intergenic
CAATCATGCTAAGTTTGGTC+GGG 0.481562 3.1:+60537043 MS.gene52349:CDS
TGTCCAACGGAGTAGTTGTT+GGG 0.482706 3.1:-60536542 None:intergenic
TCAATCATGCTAAGTTTGGT+CGG 0.484479 3.1:+60537042 MS.gene52349:CDS
TCATGTGGTATGGCGGTGAC+TGG 0.489586 3.1:+60535772 MS.gene52349:CDS
AAATCATCCTCATAACGATC+TGG 0.489976 3.1:-60536861 None:intergenic
CTTCTAGGCAATCACGTTGG+TGG 0.493272 3.1:+60536630 MS.gene52349:CDS
TATGATGCAGAGAACAACTT+TGG 0.494603 3.1:+60536663 MS.gene52349:CDS
TCTTAACCATCAGTTGCTTA+CGG 0.496441 3.1:+60535747 MS.gene52349:CDS
GAGAACCTCTTGTGGCGAGT+TGG 0.498083 3.1:+60536730 MS.gene52349:CDS
TGGAAATCAGCAGCCTGCCT+TGG 0.498920 3.1:-60536317 None:intergenic
GCGGAGGGGTTGACAATCAA+TGG 0.500617 3.1:+60536943 MS.gene52349:CDS
GTGTCCAACGGAGTAGTTGT+TGG 0.501180 3.1:-60536543 None:intergenic
ATAAAGGAGCACGATGAGCT+TGG 0.505149 3.1:+60535613 MS.gene52349:CDS
GCACGATGAGCTTGGAGGGA+TGG 0.507749 3.1:+60535621 MS.gene52349:CDS
TGGTTTCATGACGGAATCGA+TGG 0.508511 3.1:+60536602 MS.gene52349:CDS
CCTAGCTTCTTGAACCAATC+GGG 0.513363 3.1:-60537279 None:intergenic
TGCCATCTTTGAGAAACAAA+AGG 0.513478 3.1:-60538450 None:intergenic
TGAGGAACGCATTTCCCGAT+TGG 0.514461 3.1:+60537265 MS.gene52349:CDS
AGAACAACTTTGGTTCTTGG+AGG 0.517261 3.1:+60536673 MS.gene52349:CDS
ATCAATGGCTTCATGATAGT+AGG 0.517429 3.1:+60536958 MS.gene52349:CDS
AATCATGATCCACAAAGTAT+TGG 0.519058 3.1:+60537227 MS.gene52349:CDS
CCGGAACTAGGCGCAGGCTG+CGG 0.520056 3.1:-60538375 None:intergenic
CTGGAACAGTGATGCATGGT+AGG 0.522599 3.1:+60535815 MS.gene52349:CDS
GTGTGATTCGTACTGGTCCT+TGG 0.523189 3.1:+60536469 MS.gene52349:CDS
TTTCATCAGAAGGCTCAACC+TGG 0.525097 3.1:+60535796 MS.gene52349:CDS
ACTCCGAAAGTTAGTGATGA+TGG 0.525345 3.1:+60537431 MS.gene52349:CDS
ACAACTTTGGTTCTTGGAGG+AGG 0.529915 3.1:+60536676 MS.gene52349:CDS
ATTGAAATAATTCACATTGG+AGG 0.530380 3.1:-60538619 None:intergenic
ATGGAACGTGTGATTCGTAC+TGG 0.532234 3.1:+60536462 MS.gene52349:CDS
AGAAACAAAAGGCCCAAACT+CGG 0.533533 3.1:-60538439 None:intergenic
TTCTGATGGTGGTCAAGATA+CGG 0.534188 3.1:+60537568 MS.gene52349:CDS
CATATTGAAATAATTCACAT+TGG 0.535068 3.1:-60538622 None:intergenic
GTGCTGCAGAAAGTCTCCTT+CGG 0.539429 3.1:+60536513 MS.gene52349:CDS
CCCGATTGGTTCAAGAAGCT+AGG 0.542867 3.1:+60537279 MS.gene52349:CDS
ATATCATTCAGTGCCAAGGC+AGG 0.542967 3.1:+60536304 MS.gene52349:intron
AAGAACCTAAGCAACTCAAA+AGG 0.543510 3.1:+60537474 MS.gene52349:CDS
CGACCCAACAACTACTCCGT+TGG 0.543637 3.1:+60536539 MS.gene52349:CDS
CTTCATGATAGTAGGAAAAG+TGG 0.545240 3.1:+60536966 MS.gene52349:CDS
TTGTTGAAGAAGGCAAGCGT+TGG 0.547025 3.1:+60536883 MS.gene52349:CDS
CTACTGTCCAGATCGTTATG+AGG 0.551415 3.1:+60536854 MS.gene52349:CDS
GGATGGCAGCTAGGGGACGA+AGG 0.553523 3.1:+60535638 MS.gene52349:CDS
GCTTACGGCCTCATGTGGTA+TGG 0.554900 3.1:+60535762 MS.gene52349:CDS
CGTTGGACACAATTGAGATG+TGG 0.557419 3.1:+60536556 MS.gene52349:CDS
GGACACTGTTGAAAAGACTA+AGG 0.559319 3.1:+60537517 MS.gene52349:CDS
TCGGAGTAGGCATCCCACTT+AGG 0.559379 3.1:-60537415 None:intergenic
AAGGAGCACGATGAGCTTGG+AGG 0.559803 3.1:+60535616 MS.gene52349:CDS
CGTTGGCCGGAACTAGGCGC+AGG 0.559928 3.1:-60538381 None:intergenic
GAGACTTTCTGCAGCACTAG+AGG 0.560388 3.1:-60536507 None:intergenic
ATCATTGGCGCACATGCTGA+AGG 0.562105 3.1:+60537388 MS.gene52349:CDS
TGATTGTTTCGAATGATTGG+TGG 0.562618 3.1:+60535508 None:intergenic
CAAGTTGTTGGAACCACATG+AGG 0.564538 3.1:-60537173 None:intergenic
CAAGCTTGTGAATGGTACTT+GGG 0.565046 3.1:+60537109 MS.gene52349:CDS
GGTTTCATGACGGAATCGAT+GGG 0.567620 3.1:+60536603 MS.gene52349:CDS
ATAAATATCATTCAGTGCCA+AGG 0.568711 3.1:+60536300 MS.gene52349:intron
TTTGTTTCTCAAAGATGGCA+AGG 0.568905 3.1:+60538453 MS.gene52349:CDS
AGTTTGGAAACCTGAACGTA+AGG 0.570158 3.1:+60536380 MS.gene52349:CDS
AGGAGCACGATGAGCTTGGA+GGG 0.570468 3.1:+60535617 MS.gene52349:CDS
CCTTCCCTTTGGTTTCATGA+CGG 0.571131 3.1:+60536593 MS.gene52349:CDS
AGACTTTCTGCAGCACTAGA+GGG 0.572489 3.1:-60536506 None:intergenic
TGGTCAAGATACGGCTCGCA+AGG 0.572599 3.1:+60537577 MS.gene52349:CDS
TCATCACTAACTTTCGGAGT+AGG 0.573911 3.1:-60537428 None:intergenic
TTCAAGGGCAGCAGTAGCGG+AGG 0.574838 3.1:+60536927 MS.gene52349:CDS
TTAAATCTGAAATAGGAGGC+TGG 0.578400 3.1:-60537361 None:intergenic
TTGGTCGGGTGAAGATTGGG+AGG 0.580211 3.1:+60537057 MS.gene52349:CDS
GAATTCAAGGGCAGCAGTAG+CGG 0.581867 3.1:+60536924 MS.gene52349:CDS
AAGGAAGGTGTTGAGGTGAA+AGG 0.583217 3.1:+60537536 MS.gene52349:CDS
TAATTCGTTTCGTGATCGCA+TGG 0.584485 3.1:+60536353 MS.gene52349:CDS
GAAACAAAAGGCCCAAACTC+GGG 0.584579 3.1:-60538438 None:intergenic
GGCTCTAATGATTCTGATGG+TGG 0.586250 3.1:+60537557 MS.gene52349:CDS
TTGGCGCACATGCTGAAGGT+TGG 0.589454 3.1:+60537392 MS.gene52349:CDS
TGCTGAAGGTTGGCCTAAGT+GGG 0.589853 3.1:+60537402 MS.gene52349:CDS
TCGCAAGGATGTTGTTATGA+GGG 0.589858 3.1:+60537592 MS.gene52349:CDS
GAAGGTTGGAGAACCTCTTG+TGG 0.590604 3.1:+60536722 MS.gene52349:CDS
GGTGCGATGCATGATGGTAT+GGG 0.590646 3.1:+60537002 MS.gene52349:CDS
AATGCCCAACTCGCCACAAG+AGG 0.591640 3.1:-60536735 None:intergenic
CGATTCCGTCATGAAACCAA+AGG 0.592964 3.1:-60536598 None:intergenic
AGTTGTTGGGTCGTCACCGA+AGG 0.593580 3.1:-60536529 None:intergenic
GTCGTTAAATCTGAAATAGG+AGG 0.594467 3.1:-60537365 None:intergenic
GTTGGACACAATTGAGATGT+GGG 0.594572 3.1:+60536557 MS.gene52349:CDS
CTATCTACACTCCTACAAGT+TGG 0.595167 3.1:-60535589 None:intergenic
GCTCCGCGTGGAAGAACTCA+AGG 0.595436 3.1:+60537496 MS.gene52349:CDS
GATTCCGTCATGAAACCAAA+GGG 0.598259 3.1:-60536597 None:intergenic
ATTCTTCGTGCTGAATTCAA+GGG 0.599382 3.1:+60536912 MS.gene52349:CDS
GTTCTTTCATCATAAGGACA+TGG 0.602223 3.1:+60536443 MS.gene52349:CDS
GGAGCACTCTCAATTGAAAG+AGG 0.602489 3.1:-60537311 None:intergenic
CACATCTCAATTGTGTCCAA+CGG 0.604596 3.1:-60536555 None:intergenic
AAAGACTAAGGAAGGTGTTG+AGG 0.605957 3.1:+60537529 MS.gene52349:CDS
TGGTCGGGTGAAGATTGGGA+GGG 0.607874 3.1:+60537058 MS.gene52349:CDS
CTTGGAGGGATGGCAGCTAG+GGG 0.612128 3.1:+60535631 MS.gene52349:CDS
TCACATTGGAGGCATCCACA+TGG 0.612402 3.1:-60538608 None:intergenic
AAAAGTGGTGGTGAGAATGA+TGG 0.614483 3.1:+60536981 MS.gene52349:CDS
GTTGAAGAAGGCAAGCGTTG+GGG 0.614505 3.1:+60536885 MS.gene52349:CDS
TGGAGGCATCCACATGGGAA+CGG 0.615627 3.1:-60538602 None:intergenic
CACATTGGAGGCATCCACAT+GGG 0.616926 3.1:-60538607 None:intergenic
ACTGTTGAAAAGACTAAGGA+AGG 0.618206 3.1:+60537521 MS.gene52349:CDS
CCGTCATGAAACCAAAGGGA+AGG 0.620475 3.1:-60536593 None:intergenic
CAGTTGCTTACGGCCTCATG+TGG 0.624133 3.1:+60535757 MS.gene52349:CDS
TCTCAAATCGAAATCGACGT+TGG 0.627253 3.1:-60538398 None:intergenic
TGATTGAAAGAATGCACCGC+AGG 0.627366 3.1:-60537026 None:intergenic
TCAAGGGCAGCAGTAGCGGA+GGG 0.628134 3.1:+60536928 MS.gene52349:CDS
TGGAACAGTGATGCATGGTA+GGG 0.631132 3.1:+60535816 MS.gene52349:CDS
TGGCAGCTAGGGGACGAAGG+AGG 0.637628 3.1:+60535641 MS.gene52349:CDS
ATGAGGCCGTAAGCAACTGA+TGG 0.639488 3.1:-60535753 None:intergenic
AATGATGGTGCGATGCATGA+TGG 0.640869 3.1:+60536996 MS.gene52349:CDS
CAACCTGGAACAGTGATGCA+TGG 0.640883 3.1:+60535811 MS.gene52349:CDS
GCAGTAGAAACAAAATTGGA+CGG 0.641080 3.1:-60537332 None:intergenic
CGTCACAGAGACGAAGAGAA+CGG 0.645241 3.1:-60535561 None:intergenic
CAGAGACGAAGAGAACGGAA+AGG 0.645713 3.1:-60535556 None:intergenic
CAAGGGCAGCAGTAGCGGAG+GGG 0.649711 3.1:+60536929 MS.gene52349:CDS
GGGAAGTTATCGAATAGCCA+AGG 0.650302 3.1:-60536486 None:intergenic
GAGTTGGGCATTCGAAAGAG+AGG 0.650610 3.1:+60536746 MS.gene52349:CDS
TACGGCCTCATGTGGTATGG+CGG 0.650886 3.1:+60535765 MS.gene52349:CDS
GATTTCGATTTGAGAATGCG+TGG 0.651038 3.1:+60538406 MS.gene52349:CDS
AGTCACCGCCATACCACATG+AGG 0.656920 3.1:-60535770 None:intergenic
AAAGGCTCTAATGATTCTGA+TGG 0.660573 3.1:+60537554 MS.gene52349:CDS
CATGATAGTAGGAAAAGTGG+TGG 0.668175 3.1:+60536969 MS.gene52349:CDS
CTCCAACCTTCAGAGCAACA+CGG 0.671555 3.1:-60536710 None:intergenic
TGAAGCTATCCGTTCCCATG+TGG 0.672727 3.1:+60538593 MS.gene52349:CDS
TGAAGAAAGTGTGCCTCATG+TGG 0.674490 3.1:+60537160 MS.gene52349:CDS
TGAAATAGGAGGCTGGCCAG+CGG 0.677869 3.1:-60537354 None:intergenic
GCATGATGGTATGGGTCCTG+CGG 0.681351 3.1:+60537010 MS.gene52349:CDS
AGTTGGGCATTCGAAAGAGA+GGG 0.683053 3.1:+60536747 MS.gene52349:CDS
GCAACTCAAAAGGCTCCGCG+TGG 0.692021 3.1:+60537484 MS.gene52349:CDS
ATTCTTCTAGGCAATCACGT+TGG 0.696892 3.1:+60536627 MS.gene52349:CDS
TGGTGCAGCTGAAAGTGATG+AGG 0.702639 3.1:+60537247 MS.gene52349:CDS
TGTCCTTGAGTTCTTCCACG+CGG 0.767566 3.1:-60537499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGCAAAAATATATTTATT+TGG + chr3.1:60536151-60536170 MS.gene52349:intron 10.0%
!! TAGAAGAAATAAATTTATTA+TGG - chr3.1:60535972-60535991 None:intergenic 10.0%
!! TCTTCTATAAATATGTTTAT+TGG + chr3.1:60535985-60536004 MS.gene52349:intron 15.0%
!! TTATTGGATTCAATTATATT+TGG + chr3.1:60536001-60536020 MS.gene52349:intron 15.0%
!! TGAAGAATTGAAATATATGT+TGG + chr3.1:60537810-60537829 MS.gene52349:intron 20.0%
!!! AACATGTAGAGATATATTTT+TGG - chr3.1:60535920-60535939 None:intergenic 20.0%
!!! CTGAATATCCAATATATTTT+GGG - chr3.1:60536178-60536197 None:intergenic 20.0%
!!! TATATTTTCTTCTCATATCT+TGG + chr3.1:60536101-60536120 MS.gene52349:intron 20.0%
!!! TGATTTAGTTTATTCACAAT+AGG - chr3.1:60538492-60538511 None:intergenic 20.0%
!!! TTTTTTCGTTATGAAAAACT+CGG + chr3.1:60536789-60536808 MS.gene52349:CDS 20.0%
! AATATATCTCTACATGTTTC+TGG + chr3.1:60535922-60535941 MS.gene52349:intron 25.0%
! TAAACTAAATCAATGTGATG+TGG + chr3.1:60538500-60538519 MS.gene52349:intron 25.0%
! TATTTGGTCCCAAAATATAT+TGG + chr3.1:60536167-60536186 MS.gene52349:intron 25.0%
!! CTAATTTAAAATACCTAGTC+CGG + chr3.1:60537731-60537750 MS.gene52349:intron 25.0%
!! GCTGAATATCCAATATATTT+TGG - chr3.1:60536179-60536198 None:intergenic 25.0%
!!! ATTTGGTGTATATTTTTGAG+AGG + chr3.1:60536018-60536037 MS.gene52349:intron 25.0%
!!! TATTTTTGAGAGGATATACT+TGG + chr3.1:60536028-60536047 MS.gene52349:intron 25.0%
AATCATGATCCACAAAGTAT+TGG + chr3.1:60537227-60537246 MS.gene52349:CDS 30.0%
AGGTGGGATTAATAATGTAA+TGG + chr3.1:60537625-60537644 MS.gene52349:intron 30.0%
ATAAATATCATTCAGTGCCA+AGG + chr3.1:60536300-60536319 MS.gene52349:intron 30.0%
CTCCATATCAATATGATTGT+GGG - chr3.1:60537932-60537951 None:intergenic 30.0%
GTTTCAGTTCTTTCATCATA+AGG + chr3.1:60536437-60536456 MS.gene52349:CDS 30.0%
TACTCTTGCAATTAAGGATA+TGG + chr3.1:60535684-60535703 MS.gene52349:CDS 30.0%
TATGGAAAAGAATAACCTGA+AGG - chr3.1:60535954-60535973 None:intergenic 30.0%
TCTTTCAATCATGCTAAGTT+TGG + chr3.1:60537038-60537057 MS.gene52349:CDS 30.0%
TGGGATTAATAATGTAATGG+CGG + chr3.1:60537628-60537647 MS.gene52349:intron 30.0%
TTCAGATTTAACGACATCAT+TGG + chr3.1:60537373-60537392 MS.gene52349:CDS 30.0%
TTTAAATTAGGAACTGTGCT+CGG - chr3.1:60537721-60537740 None:intergenic 30.0%
! ATGGCTATTATTTCTTCTTC+AGG + chr3.1:60535703-60535722 MS.gene52349:CDS 30.0%
! ATTTGTTTGGTTTCTATTGC+TGG + chr3.1:60536224-60536243 MS.gene52349:intron 30.0%
! GATGTCGTTAAATCTGAAAT+AGG - chr3.1:60537371-60537390 None:intergenic 30.0%
! TAGGAGTGTAGATAGTATAA+AGG + chr3.1:60535597-60535616 MS.gene52349:CDS 30.0%
! TGTTTTTCTGTTGATCGTAT+TGG + chr3.1:60537844-60537863 MS.gene52349:intron 30.0%
! TTATTTCTTCTTCAGGTTTC+AGG + chr3.1:60535710-60535729 MS.gene52349:CDS 30.0%
! TTCGTAAAGCAAGATTTGTT+TGG + chr3.1:60536211-60536230 MS.gene52349:intron 30.0%
!! CGGACTAGGTATTTTAAATT+AGG - chr3.1:60537733-60537752 None:intergenic 30.0%
!! GGTAACTTTTGTTATGTTTG+CGG + chr3.1:60536810-60536829 MS.gene52349:CDS 30.0%
AAATCACCGATAATACACCA+AGG - chr3.1:60538072-60538091 None:intergenic 35.0%
AAATCATCCTCATAACGATC+TGG - chr3.1:60536864-60536883 None:intergenic 35.0%
AAGAACCTAAGCAACTCAAA+AGG + chr3.1:60537474-60537493 MS.gene52349:CDS 35.0%
ACTGTTGAAAAGACTAAGGA+AGG + chr3.1:60537521-60537540 MS.gene52349:CDS 35.0%
ATCAATGGCTTCATGATAGT+AGG + chr3.1:60536958-60536977 MS.gene52349:CDS 35.0%
ATTCTTCGTGCTGAATTCAA+GGG + chr3.1:60536912-60536931 MS.gene52349:CDS 35.0%
CAAATAAGACTCATTTACCC+TGG - chr3.1:60537673-60537692 None:intergenic 35.0%
CCACAATCATATTGATATGG+AGG + chr3.1:60537930-60537949 MS.gene52349:intron 35.0%
CCTCCATATCAATATGATTG+TGG - chr3.1:60537933-60537952 None:intergenic 35.0%
CGAAACGAATTAAAGTGAAC+TGG - chr3.1:60536345-60536364 None:intergenic 35.0%
CGAATTAAAGTGAACTGGTT+TGG - chr3.1:60536340-60536359 None:intergenic 35.0%
CGGAACACAATCTAACAAAA+GGG - chr3.1:60538358-60538377 None:intergenic 35.0%
CTCCCACAATCATATTGATA+TGG + chr3.1:60537927-60537946 MS.gene52349:intron 35.0%
CTTCATGATAGTAGGAAAAG+TGG + chr3.1:60536966-60536985 MS.gene52349:CDS 35.0%
CTTGCTGATATTCATATGGA+TGG + chr3.1:60538186-60538205 MS.gene52349:intron 35.0%
CTTTACTGTCAGCTTATGAT+TGG + chr3.1:60536066-60536085 MS.gene52349:intron 35.0%
GAACACAATCTAACAAAAGG+GGG - chr3.1:60538356-60538375 None:intergenic 35.0%
GATGTTGTTATGAGGGATAT+GGG + chr3.1:60537599-60537618 MS.gene52349:CDS 35.0%
GATTATTGCATCCGGTTTAT+AGG - chr3.1:60537758-60537777 None:intergenic 35.0%
GCAGTAGAAACAAAATTGGA+CGG - chr3.1:60537335-60537354 None:intergenic 35.0%
GGAACACAATCTAACAAAAG+GGG - chr3.1:60538357-60538376 None:intergenic 35.0%
GGGATTAATAATGTAATGGC+GGG + chr3.1:60537629-60537648 MS.gene52349:intron 35.0%
GTTCTTTCATCATAAGGACA+TGG + chr3.1:60536443-60536462 MS.gene52349:CDS 35.0%
TATGATGCAGAGAACAACTT+TGG + chr3.1:60536663-60536682 MS.gene52349:CDS 35.0%
TATTCTTCGTGCTGAATTCA+AGG + chr3.1:60536911-60536930 MS.gene52349:CDS 35.0%
TCAATCATGCTAAGTTTGGT+CGG + chr3.1:60537042-60537061 MS.gene52349:CDS 35.0%
TCTTAACCATCAGTTGCTTA+CGG + chr3.1:60535747-60535766 MS.gene52349:CDS 35.0%
TCTTCAATAAAACACCTTGC+TGG - chr3.1:60537146-60537165 None:intergenic 35.0%
TGGTTTCTATTGCTGGATAT+GGG + chr3.1:60536231-60536250 MS.gene52349:intron 35.0%
TTAAATTAGGAACTGTGCTC+GGG - chr3.1:60537720-60537739 None:intergenic 35.0%
TTCACTTGGTTCAAAAGTCT+TGG + chr3.1:60538216-60538235 MS.gene52349:intron 35.0%
TTGAATTCAGCACGAAGAAT+AGG - chr3.1:60536912-60536931 None:intergenic 35.0%
TTGGTTTCTATTGCTGGATA+TGG + chr3.1:60536230-60536249 MS.gene52349:intron 35.0%
! AAAGGCTCTAATGATTCTGA+TGG + chr3.1:60537554-60537573 MS.gene52349:CDS 35.0%
! AGACCTTCCTTTCTTTTCAT+TGG - chr3.1:60538112-60538131 None:intergenic 35.0%
! CAACTTCCTTGGTGTATTAT+CGG + chr3.1:60538063-60538082 MS.gene52349:intron 35.0%
! GAATCTCTTGTCTAGTGTTT+TGG - chr3.1:60538554-60538573 None:intergenic 35.0%
! GAGGATGATTTTGTTGAAGA+AGG + chr3.1:60536873-60536892 MS.gene52349:CDS 35.0%
! GTCGTTAAATCTGAAATAGG+AGG - chr3.1:60537368-60537387 None:intergenic 35.0%
! TGCCATCTTTGAGAAACAAA+AGG - chr3.1:60538453-60538472 None:intergenic 35.0%
! TTAAATCTGAAATAGGAGGC+TGG - chr3.1:60537364-60537383 None:intergenic 35.0%
! TTCTGTTGATCGTATTGGTA+GGG + chr3.1:60537849-60537868 MS.gene52349:intron 35.0%
! TTTCTGTTGATCGTATTGGT+AGG + chr3.1:60537848-60537867 MS.gene52349:intron 35.0%
! TTTGTTTCTCAAAGATGGCA+AGG + chr3.1:60538453-60538472 MS.gene52349:CDS 35.0%
!! CAGGGTAAATGAGTCTTATT+TGG + chr3.1:60537671-60537690 MS.gene52349:intron 35.0%
!! GGTAAATGAGTCTTATTTGG+TGG + chr3.1:60537674-60537693 MS.gene52349:intron 35.0%
!! TTTGAGTTGCTTAGGTTCTT+TGG - chr3.1:60537474-60537493 None:intergenic 35.0%
!!! CTGTTTTTCAAGCTTGTGAA+TGG + chr3.1:60537101-60537120 MS.gene52349:CDS 35.0%
ACGTTGTCATTGTTTCAGAC+AGG - chr3.1:60537780-60537799 None:intergenic 40.0%
ACTCCGAAAGTTAGTGATGA+TGG + chr3.1:60537431-60537450 MS.gene52349:CDS 40.0%
AGAAACAAAAGGCCCAAACT+CGG - chr3.1:60538442-60538461 None:intergenic 40.0%
AGCGGCAGTAGAAACAAAAT+TGG - chr3.1:60537339-60537358 None:intergenic 40.0%
AGTTTGGAAACCTGAACGTA+AGG + chr3.1:60536380-60536399 MS.gene52349:CDS 40.0%
ATTCTTCTAGGCAATCACGT+TGG + chr3.1:60536627-60536646 MS.gene52349:CDS 40.0%
CAAGCTTGTGAATGGTACTT+GGG + chr3.1:60537109-60537128 MS.gene52349:CDS 40.0%
CAATCATGCTAAGTTTGGTC+GGG + chr3.1:60537043-60537062 MS.gene52349:CDS 40.0%
CACATCTCAATTGTGTCCAA+CGG - chr3.1:60536558-60536577 None:intergenic 40.0%
CAGCCAATGAAAAGAAAGGA+AGG + chr3.1:60538106-60538125 MS.gene52349:intron 40.0%
CATGATAGTAGGAAAAGTGG+TGG + chr3.1:60536969-60536988 MS.gene52349:CDS 40.0%
CCAACATTTCTCAACTTCCT+TGG + chr3.1:60538052-60538071 MS.gene52349:intron 40.0%
CCAAGGAAGTTGAGAAATGT+TGG - chr3.1:60538055-60538074 None:intergenic 40.0%
CTATCTACACTCCTACAAGT+TGG - chr3.1:60535592-60535611 None:intergenic 40.0%
CTGTCAGCCAATGAAAAGAA+AGG + chr3.1:60538102-60538121 MS.gene52349:intron 40.0%
GAATCGATGGGTATTCTTCT+AGG + chr3.1:60536615-60536634 MS.gene52349:CDS 40.0%
GAGAGTCTTGGAACTTACTT+CGG + chr3.1:60538022-60538041 MS.gene52349:intron 40.0%
GAGATTTCAACCTTACGTTC+AGG - chr3.1:60536393-60536412 None:intergenic 40.0%
GAGCTATGGCAAATGATAGT+TGG + chr3.1:60538271-60538290 MS.gene52349:intron 40.0%
GATTCCGTCATGAAACCAAA+GGG - chr3.1:60536600-60536619 None:intergenic 40.0%
GCGGAACACAATCTAACAAA+AGG - chr3.1:60538359-60538378 None:intergenic 40.0%
GGACACTGTTGAAAAGACTA+AGG + chr3.1:60537517-60537536 MS.gene52349:CDS 40.0%
GGAGAAATTGGATAGAGCTA+TGG + chr3.1:60538257-60538276 MS.gene52349:intron 40.0%
GGATGTTGTTATGAGGGATA+TGG + chr3.1:60537598-60537617 MS.gene52349:CDS 40.0%
GTGATGTGGCTCTTTCTAAA+TGG + chr3.1:60538514-60538533 MS.gene52349:intron 40.0%
GTGCCATCATCACTAACTTT+CGG - chr3.1:60537437-60537456 None:intergenic 40.0%
GTTATGAGGGATATGGGATT+AGG + chr3.1:60537605-60537624 MS.gene52349:CDS 40.0%
GTTGGACACAATTGAGATGT+GGG + chr3.1:60536557-60536576 MS.gene52349:CDS 40.0%
TAATTCGTTTCGTGATCGCA+TGG + chr3.1:60536353-60536372 MS.gene52349:CDS 40.0%
TACACTTCAGTTCCTTGCAT+AGG + chr3.1:60535853-60535872 MS.gene52349:intron 40.0%
TACTGTCAGCTTATGATTGG+AGG + chr3.1:60536069-60536088 MS.gene52349:intron 40.0%
TCAAGCTTGTGAATGGTACT+TGG + chr3.1:60537108-60537127 MS.gene52349:CDS 40.0%
TCAGACAGGATTATTGCATC+CGG - chr3.1:60537766-60537785 None:intergenic 40.0%
TCATCACTAACTTTCGGAGT+AGG - chr3.1:60537431-60537450 None:intergenic 40.0%
TCGCAAGGATGTTGTTATGA+GGG + chr3.1:60537592-60537611 MS.gene52349:CDS 40.0%
TCGCAGTACTCTTGCAATTA+AGG + chr3.1:60535678-60535697 MS.gene52349:CDS 40.0%
TCTCAAAGATGGCAAGGTTA+TGG + chr3.1:60538459-60538478 MS.gene52349:intron 40.0%
TCTCAAATCGAAATCGACGT+TGG - chr3.1:60538401-60538420 None:intergenic 40.0%
TGGATGGTTATGCTTTCACT+TGG + chr3.1:60538202-60538221 MS.gene52349:intron 40.0%
TGTGGCTTATTCAAGGATTC+CGG + chr3.1:60538142-60538161 MS.gene52349:intron 40.0%
TTTATGGTATGCCAGAAGGA+GGG + chr3.1:60537992-60538011 MS.gene52349:intron 40.0%
! AAAAGTGGTGGTGAGAATGA+TGG + chr3.1:60536981-60537000 MS.gene52349:CDS 40.0%
! ATTGCTGGATATGGGCTTTT+TGG + chr3.1:60536239-60536258 MS.gene52349:intron 40.0%
! GATTTCGATTTGAGAATGCG+TGG + chr3.1:60538406-60538425 MS.gene52349:CDS 40.0%
! GGATTTTATGGTATGCCAGA+AGG + chr3.1:60537988-60538007 MS.gene52349:intron 40.0%
! TCTGTTGATCGTATTGGTAG+GGG + chr3.1:60537850-60537869 MS.gene52349:intron 40.0%
! TCTTATTTGGTGGAACTGTC+GGG + chr3.1:60537684-60537703 MS.gene52349:intron 40.0%
! TCTTCTCATATCTTGGCTTG+TGG + chr3.1:60536108-60536127 MS.gene52349:intron 40.0%
! TGGCGGTTAACTGGATTTTA+TGG + chr3.1:60537976-60537995 MS.gene52349:intron 40.0%
! TTTTATGGTATGCCAGAAGG+AGG + chr3.1:60537991-60538010 MS.gene52349:intron 40.0%
!! AAAGACTAAGGAAGGTGTTG+AGG + chr3.1:60537529-60537548 MS.gene52349:CDS 40.0%
!! ACTTTTGTTATGTTTGCGGC+AGG + chr3.1:60536814-60536833 MS.gene52349:CDS 40.0%
!! AGAACAACTTTGGTTCTTGG+AGG + chr3.1:60536673-60536692 MS.gene52349:CDS 40.0%
!! CAGAGAACAACTTTGGTTCT+TGG + chr3.1:60536670-60536689 MS.gene52349:CDS 40.0%
!! GATGCATGGTAGGGTATTTT+TGG + chr3.1:60535825-60535844 MS.gene52349:intron 40.0%
!! GGCCTTTTGTTTCTCAAAGA+TGG + chr3.1:60538448-60538467 MS.gene52349:CDS 40.0%
!! GTCTTATTTGGTGGAACTGT+CGG + chr3.1:60537683-60537702 MS.gene52349:intron 40.0%
!! TGGGCTTGCTGATATTCATA+TGG + chr3.1:60538182-60538201 MS.gene52349:intron 40.0%
!! TTCTGATGGTGGTCAAGATA+CGG + chr3.1:60537568-60537587 MS.gene52349:CDS 40.0%
!!! AATTTTGTTTCTACTGCCGC+TGG + chr3.1:60537338-60537357 MS.gene52349:CDS 40.0%
AAATCGAAATCGACGTTGGC+CGG - chr3.1:60538397-60538416 None:intergenic 45.0%
AAGTTTGGTCGGGTGAAGAT+TGG + chr3.1:60537053-60537072 MS.gene52349:CDS 45.0%
AGACTTTCTGCAGCACTAGA+GGG - chr3.1:60536509-60536528 None:intergenic 45.0%
AGTTGGGCATTCGAAAGAGA+GGG + chr3.1:60536747-60536766 MS.gene52349:CDS 45.0%
AGTTTGGTCGGGTGAAGATT+GGG + chr3.1:60537054-60537073 MS.gene52349:CDS 45.0%
ATATCATTCAGTGCCAAGGC+AGG + chr3.1:60536304-60536323 MS.gene52349:intron 45.0%
ATGAGGGATATGGGATTAGG+TGG + chr3.1:60537608-60537627 MS.gene52349:intron 45.0%
ATGGAACGTGTGATTCGTAC+TGG + chr3.1:60536462-60536481 MS.gene52349:CDS 45.0%
CAAGTTGTTGGAACCACATG+AGG - chr3.1:60537176-60537195 None:intergenic 45.0%
CCTAGCTTCTTGAACCAATC+GGG - chr3.1:60537282-60537301 None:intergenic 45.0%
CGATTCCGTCATGAAACCAA+AGG - chr3.1:60536601-60536620 None:intergenic 45.0%
CGTCAACTGTGGCTTATTCA+AGG + chr3.1:60538135-60538154 MS.gene52349:intron 45.0%
CGTTGGACACAATTGAGATG+TGG + chr3.1:60536556-60536575 MS.gene52349:CDS 45.0%
CTACTGTCCAGATCGTTATG+AGG + chr3.1:60536854-60536873 MS.gene52349:CDS 45.0%
CTCGCAAGGATGTTGTTATG+AGG + chr3.1:60537591-60537610 MS.gene52349:CDS 45.0%
GAAACAAAAGGCCCAAACTC+GGG - chr3.1:60538441-60538460 None:intergenic 45.0%
GCCTAGCTTCTTGAACCAAT+CGG - chr3.1:60537283-60537302 None:intergenic 45.0%
GGAGCAGTGTTACAAGTTGT+TGG - chr3.1:60537188-60537207 None:intergenic 45.0%
GGGAAGTTATCGAATAGCCA+AGG - chr3.1:60536489-60536508 None:intergenic 45.0%
GTGACGCTATACCAACTTGT+AGG + chr3.1:60535578-60535597 MS.gene52349:CDS 45.0%
TAAGACTCATTTACCCTGGC+AGG - chr3.1:60537669-60537688 None:intergenic 45.0%
TCAGCTGCACCAATACTTTG+TGG - chr3.1:60537239-60537258 None:intergenic 45.0%
TCCTTGCATAGGACTCTTTC+TGG + chr3.1:60535864-60535883 MS.gene52349:intron 45.0%
TGAGGGATATGGGATTAGGT+GGG + chr3.1:60537609-60537628 MS.gene52349:intron 45.0%
TGATTGAAAGAATGCACCGC+AGG - chr3.1:60537029-60537048 None:intergenic 45.0%
TGGAACAGTGATGCATGGTA+GGG + chr3.1:60535816-60535835 MS.gene52349:CDS 45.0%
TGTCCAACGGAGTAGTTGTT+GGG - chr3.1:60536545-60536564 None:intergenic 45.0%
TGTTATGTTTGCGGCAGGTT+GGG + chr3.1:60536819-60536838 MS.gene52349:CDS 45.0%
TGTTGAAGAAGGCAAGCGTT+GGG + chr3.1:60536884-60536903 MS.gene52349:CDS 45.0%
TTCTAGGCAATCACGTTGGT+GGG + chr3.1:60536631-60536650 MS.gene52349:CDS 45.0%
TTGCATCCGGTTTATAGGTC+CGG - chr3.1:60537753-60537772 None:intergenic 45.0%
TTGTTAGCAAGCTGCAGAAC+TGG - chr3.1:60537209-60537228 None:intergenic 45.0%
TTGTTATGTTTGCGGCAGGT+TGG + chr3.1:60536818-60536837 MS.gene52349:CDS 45.0%
TTGTTGAAGAAGGCAAGCGT+TGG + chr3.1:60536883-60536902 MS.gene52349:CDS 45.0%
TTTCATCAGAAGGCTCAACC+TGG + chr3.1:60535796-60535815 MS.gene52349:CDS 45.0%
! AATGATGGTGCGATGCATGA+TGG + chr3.1:60536996-60537015 MS.gene52349:CDS 45.0%
! ATAAAGGAGCACGATGAGCT+TGG + chr3.1:60535613-60535632 MS.gene52349:CDS 45.0%
! CCTTCCCTTTGGTTTCATGA+CGG + chr3.1:60536593-60536612 MS.gene52349:CDS 45.0%
! CTTATTTGGTGGAACTGTCG+GGG + chr3.1:60537685-60537704 MS.gene52349:intron 45.0%
! GAGGTAACTGACTCTTTGAG+GGG + chr3.1:60537949-60537968 MS.gene52349:intron 45.0%
! GGAGCACTCTCAATTGAAAG+AGG - chr3.1:60537314-60537333 None:intergenic 45.0%
! GGAGGTAACTGACTCTTTGA+GGG + chr3.1:60537948-60537967 MS.gene52349:intron 45.0%
! GGCTCTAATGATTCTGATGG+TGG + chr3.1:60537557-60537576 MS.gene52349:CDS 45.0%
! GGTTTCATGACGGAATCGAT+GGG + chr3.1:60536603-60536622 MS.gene52349:CDS 45.0%
! TGAAGAAAGTGTGCCTCATG+TGG + chr3.1:60537160-60537179 MS.gene52349:CDS 45.0%
! TGGAGGTAACTGACTCTTTG+AGG + chr3.1:60537947-60537966 MS.gene52349:intron 45.0%
! TGGTTTCATGACGGAATCGA+TGG + chr3.1:60536602-60536621 MS.gene52349:CDS 45.0%
!! AAGGAAGGTGTTGAGGTGAA+AGG + chr3.1:60537536-60537555 MS.gene52349:CDS 45.0%
!! ACAACTTTGGTTCTTGGAGG+AGG + chr3.1:60536676-60536695 MS.gene52349:CDS 45.0%
!! GAGGTGGTTTGGCTTGTTTA+TGG + chr3.1:60537872-60537891 MS.gene52349:intron 45.0%
!! GTGGTGTCATGTTCTCAGTT+TGG + chr3.1:60535527-60535546 MS.gene52349:CDS 45.0%
!! TCTCATATCTTGGCTTGTGG+CGG + chr3.1:60536111-60536130 MS.gene52349:intron 45.0%
!! TGTTTCTGGAAGCAACCTTC+AGG + chr3.1:60535936-60535955 MS.gene52349:intron 45.0%
!!! GGGCTTTTTGGTTCAACAGA+AGG + chr3.1:60536251-60536270 MS.gene52349:intron 45.0%
!!! GGTGACTGGTTTTCATCAGA+AGG + chr3.1:60535786-60535805 MS.gene52349:CDS 45.0%
AGAACCTCTTGTGGCGAGTT+GGG + chr3.1:60536731-60536750 MS.gene52349:CDS 50.0%
ATCATTGGCGCACATGCTGA+AGG + chr3.1:60537388-60537407 MS.gene52349:CDS 50.0%
ATGAGGCCGTAAGCAACTGA+TGG - chr3.1:60535756-60535775 None:intergenic 50.0%
CAAAAGGGGGTAGTGATCAG+AGG - chr3.1:60538343-60538362 None:intergenic 50.0%
CAACCTGGAACAGTGATGCA+TGG + chr3.1:60535811-60535830 MS.gene52349:CDS 50.0%
CAAGCTCACAACCTTCCCTT+TGG + chr3.1:60536582-60536601 MS.gene52349:CDS 50.0%
CAGAGACGAAGAGAACGGAA+AGG - chr3.1:60535559-60535578 None:intergenic 50.0%
CAGCATCCAAAACTGCTTGC+CGG - chr3.1:60538164-60538183 None:intergenic 50.0%
CCGTCATGAAACCAAAGGGA+AGG - chr3.1:60536596-60536615 None:intergenic 50.0%
CCTAGTCCGGACCTATAAAC+CGG + chr3.1:60537744-60537763 MS.gene52349:intron 50.0%
CGTCACAGAGACGAAGAGAA+CGG - chr3.1:60535564-60535583 None:intergenic 50.0%
CTACCATGCATCACTGTTCC+AGG - chr3.1:60535817-60535836 None:intergenic 50.0%
CTCCAACCTTCAGAGCAACA+CGG - chr3.1:60536713-60536732 None:intergenic 50.0%
CTGGAACAGTGATGCATGGT+AGG + chr3.1:60535815-60535834 MS.gene52349:CDS 50.0%
CTTCTAGGCAATCACGTTGG+TGG + chr3.1:60536630-60536649 MS.gene52349:CDS 50.0%
GAAGGTCTGATCGTCAACTG+TGG + chr3.1:60538124-60538143 MS.gene52349:intron 50.0%
GAAGGTTGGAGAACCTCTTG+TGG + chr3.1:60536722-60536741 MS.gene52349:CDS 50.0%
GAATTCAAGGGCAGCAGTAG+CGG + chr3.1:60536924-60536943 MS.gene52349:CDS 50.0%
GAGACTTTCTGCAGCACTAG+AGG - chr3.1:60536510-60536529 None:intergenic 50.0%
GAGTTGGGCATTCGAAAGAG+AGG + chr3.1:60536746-60536765 MS.gene52349:CDS 50.0%
GCCAGAAAGAGTCCTATGCA+AGG - chr3.1:60535868-60535887 None:intergenic 50.0%
GGCTTGTGGCGGTTTATACA+TGG + chr3.1:60536122-60536141 MS.gene52349:intron 50.0%
GGTGAAGATTGGGAGGGATT+TGG + chr3.1:60537064-60537083 MS.gene52349:CDS 50.0%
GGTGCGATGCATGATGGTAT+GGG + chr3.1:60537002-60537021 MS.gene52349:CDS 50.0%
GTGATCGCATGGCTCAAGTT+TGG + chr3.1:60536364-60536383 MS.gene52349:CDS 50.0%
GTGCTGCAGAAAGTCTCCTT+CGG + chr3.1:60536513-60536532 MS.gene52349:CDS 50.0%
GTGTCCAACGGAGTAGTTGT+TGG - chr3.1:60536546-60536565 None:intergenic 50.0%
TATTGGTAGGGGAGGTGGTT+TGG + chr3.1:60537861-60537880 MS.gene52349:intron 50.0%
TCACGCTGTGGAGGAGAAAT+TGG + chr3.1:60538245-60538264 MS.gene52349:intron 50.0%
TCTTGGAACTTCTCACGCTG+TGG + chr3.1:60538233-60538252 MS.gene52349:intron 50.0%
TGAAGCTATCCGTTCCCATG+TGG + chr3.1:60538593-60538612 MS.gene52349:CDS 50.0%
TGAGGAACGCATTTCCCGAT+TGG + chr3.1:60537265-60537284 MS.gene52349:CDS 50.0%
TGGTGCAGCTGAAAGTGATG+AGG + chr3.1:60537247-60537266 MS.gene52349:CDS 50.0%
TGGTGCGATGCATGATGGTA+TGG + chr3.1:60537001-60537020 MS.gene52349:CDS 50.0%
TGTCCTTGAGTTCTTCCACG+CGG - chr3.1:60537502-60537521 None:intergenic 50.0%
! ACTCTTTGAGGGGAAGATGG+CGG + chr3.1:60537959-60537978 MS.gene52349:intron 50.0%
! AGGATTCCGGCAAGCAGTTT+TGG + chr3.1:60538155-60538174 MS.gene52349:intron 50.0%
! CCCGATTGGTTCAAGAAGCT+AGG + chr3.1:60537279-60537298 MS.gene52349:CDS 50.0%
! CTGACTCTTTGAGGGGAAGA+TGG + chr3.1:60537956-60537975 MS.gene52349:intron 50.0%
! GGGTGACTTTTGATCCAGCA+AGG + chr3.1:60537129-60537148 MS.gene52349:CDS 50.0%
! GTGTGATTCGTACTGGTCCT+TGG + chr3.1:60536469-60536488 MS.gene52349:CDS 50.0%
! GTTGAAGAAGGCAAGCGTTG+GGG + chr3.1:60536885-60536904 MS.gene52349:CDS 50.0%
! GTTGATCGTATTGGTAGGGG+AGG + chr3.1:60537853-60537872 MS.gene52349:intron 50.0%
!! ATGCTGAAGGTTGGCCTAAG+TGG + chr3.1:60537401-60537420 MS.gene52349:CDS 50.0%
!! CACATTGGAGGCATCCACAT+GGG - chr3.1:60538610-60538629 None:intergenic 50.0%
!! GGCTTGTTGAACCCGAGTTT+GGG + chr3.1:60538427-60538446 MS.gene52349:CDS 50.0%
!! TCACATTGGAGGCATCCACA+TGG - chr3.1:60538611-60538630 None:intergenic 50.0%
!! TGCTGAAGGTTGGCCTAAGT+GGG + chr3.1:60537402-60537421 MS.gene52349:CDS 50.0%
!! TGGCTTGTTGAACCCGAGTT+TGG + chr3.1:60538426-60538445 MS.gene52349:CDS 50.0%
!!! CGGAGCCTTTTGAGTTGCTT+AGG - chr3.1:60537482-60537501 None:intergenic 50.0%
!!! GGCAAGCAGTTTTGGATGCT+GGG + chr3.1:60538163-60538182 MS.gene52349:intron 50.0%
AATCGACGTTGGCCGGAACT+AGG - chr3.1:60538390-60538409 None:intergenic 55.0%
AATGCCCAACTCGCCACAAG+AGG - chr3.1:60536738-60536757 None:intergenic 55.0%
AGTCACCGCCATACCACATG+AGG - chr3.1:60535773-60535792 None:intergenic 55.0%
AGTTGTTGGGTCGTCACCGA+AGG - chr3.1:60536532-60536551 None:intergenic 55.0%
ATGGTATGCCAGAAGGAGGG+AGG + chr3.1:60537995-60538014 MS.gene52349:intron 55.0%
CAGTTGCTTACGGCCTCATG+TGG + chr3.1:60535757-60535776 MS.gene52349:CDS 55.0%
CCGGTTTATAGGTCCGGACT+AGG - chr3.1:60537747-60537766 None:intergenic 55.0%
CGACCCAACAACTACTCCGT+TGG + chr3.1:60536539-60536558 MS.gene52349:CDS 55.0%
GAGAACCTCTTGTGGCGAGT+TGG + chr3.1:60536730-60536749 MS.gene52349:CDS 55.0%
GAGGGAGGAGAAGAGAGTCT+TGG + chr3.1:60538010-60538029 MS.gene52349:intron 55.0%
GCATGATGGTATGGGTCCTG+CGG + chr3.1:60537010-60537029 MS.gene52349:CDS 55.0%
GCGGAGGGGTTGACAATCAA+TGG + chr3.1:60536943-60536962 MS.gene52349:CDS 55.0%
GCTTACGGCCTCATGTGGTA+TGG + chr3.1:60535762-60535781 MS.gene52349:CDS 55.0%
GGGGTAGTGATCAGAGGATG+TGG - chr3.1:60538337-60538356 None:intergenic 55.0%
TACGGCCTCATGTGGTATGG+CGG + chr3.1:60535765-60535784 MS.gene52349:CDS 55.0%
TCATGTGGTATGGCGGTGAC+TGG + chr3.1:60535772-60535791 MS.gene52349:CDS 55.0%
TCGGAGTAGGCATCCCACTT+AGG - chr3.1:60537418-60537437 None:intergenic 55.0%
TCTCTTCTCCTCCCTCCTTC+TGG - chr3.1:60538006-60538025 None:intergenic 55.0%
TGGAAATCAGCAGCCTGCCT+TGG - chr3.1:60536320-60536339 None:intergenic 55.0%
TGGAACTTCTCACGCTGTGG+AGG + chr3.1:60538236-60538255 MS.gene52349:intron 55.0%
TGGTCAAGATACGGCTCGCA+AGG + chr3.1:60537577-60537596 MS.gene52349:CDS 55.0%
TGGTCGGGTGAAGATTGGGA+GGG + chr3.1:60537058-60537077 MS.gene52349:CDS 55.0%
TGGTGGAACTGTCGGGGTTT+AGG + chr3.1:60537691-60537710 MS.gene52349:intron 55.0%
TTGGCGCACATGCTGAAGGT+TGG + chr3.1:60537392-60537411 MS.gene52349:CDS 55.0%
TTGGTCGGGTGAAGATTGGG+AGG + chr3.1:60537057-60537076 MS.gene52349:CDS 55.0%
! AAGGAGCACGATGAGCTTGG+AGG + chr3.1:60535616-60535635 MS.gene52349:CDS 55.0%
! AGGAGCACGATGAGCTTGGA+GGG + chr3.1:60535617-60535636 MS.gene52349:CDS 55.0%
! AGGGGAAGATGGCGGTTAAC+TGG + chr3.1:60537967-60537986 MS.gene52349:intron 55.0%
! GATCGTATTGGTAGGGGAGG+TGG + chr3.1:60537856-60537875 MS.gene52349:intron 55.0%
! TGAAATAGGAGGCTGGCCAG+CGG - chr3.1:60537357-60537376 None:intergenic 55.0%
!! CTCCGTGTTGCTCTGAAGGT+TGG + chr3.1:60536708-60536727 MS.gene52349:CDS 55.0%
!! TGGAGGCATCCACATGGGAA+CGG - chr3.1:60538605-60538624 None:intergenic 55.0%
!!! CGGCAAGCAGTTTTGGATGC+TGG + chr3.1:60538162-60538181 MS.gene52349:intron 55.0%
AGCTTGGAGGGATGGCAGCT+AGG + chr3.1:60535629-60535648 MS.gene52349:CDS 60.0%
CTCATTTACCCTGGCAGGCC+TGG - chr3.1:60537664-60537683 None:intergenic 60.0%
CTTGGAGGGATGGCAGCTAG+GGG + chr3.1:60535631-60535650 MS.gene52349:CDS 60.0%
GCAACTCAAAAGGCTCCGCG+TGG + chr3.1:60537484-60537503 MS.gene52349:CDS 60.0%
GCACGATGAGCTTGGAGGGA+TGG + chr3.1:60535621-60535640 MS.gene52349:CDS 60.0%
GCTCCGCGTGGAAGAACTCA+AGG + chr3.1:60537496-60537515 MS.gene52349:CDS 60.0%
GCTTGGAGGGATGGCAGCTA+GGG + chr3.1:60535630-60535649 MS.gene52349:CDS 60.0%
TTCAAGGGCAGCAGTAGCGG+AGG + chr3.1:60536927-60536946 MS.gene52349:CDS 60.0%
! AATGGCGGGACCTGTACACC+AGG + chr3.1:60537643-60537662 MS.gene52349:intron 60.0%
! GCGTCTCCGTGTTGCTCTGA+AGG + chr3.1:60536704-60536723 MS.gene52349:CDS 60.0%
! TCAAGGGCAGCAGTAGCGGA+GGG + chr3.1:60536928-60536947 MS.gene52349:CDS 60.0%
ACCTGTACACCAGGCCTGCC+AGG + chr3.1:60537652-60537671 MS.gene52349:intron 65.0%
CCTGTACACCAGGCCTGCCA+GGG + chr3.1:60537653-60537672 MS.gene52349:intron 65.0%
GGATGGCAGCTAGGGGACGA+AGG + chr3.1:60535638-60535657 MS.gene52349:CDS 65.0%
TGGCAGCTAGGGGACGAAGG+AGG + chr3.1:60535641-60535660 MS.gene52349:CDS 65.0%
! CAAGGGCAGCAGTAGCGGAG+GGG + chr3.1:60536929-60536948 MS.gene52349:CDS 65.0%
CCCTGGCAGGCCTGGTGTAC+AGG - chr3.1:60537656-60537675 None:intergenic 70.0%
CCGCAGCCTGCGCCTAGTTC+CGG + chr3.1:60538375-60538394 MS.gene52349:CDS 70.0%
CCGGAACTAGGCGCAGGCTG+CGG - chr3.1:60538378-60538397 None:intergenic 70.0%
CGTTGGCCGGAACTAGGCGC+AGG - chr3.1:60538384-60538403 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 60535520 60538630 60535520 ID=MS.gene52349
chr3.1 mRNA 60535520 60538630 60535520 ID=MS.gene52349.t1;Parent=MS.gene52349
chr3.1 exon 60535520 60535837 60535520 ID=MS.gene52349.t1.exon1;Parent=MS.gene52349.t1
chr3.1 CDS 60535520 60535837 60535520 ID=cds.MS.gene52349.t1;Parent=MS.gene52349.t1
chr3.1 exon 60536315 60537626 60536315 ID=MS.gene52349.t1.exon2;Parent=MS.gene52349.t1
chr3.1 CDS 60536315 60537626 60536315 ID=cds.MS.gene52349.t1;Parent=MS.gene52349.t1
chr3.1 exon 60538367 60538474 60538367 ID=MS.gene52349.t1.exon3;Parent=MS.gene52349.t1
chr3.1 CDS 60538367 60538474 60538367 ID=cds.MS.gene52349.t1;Parent=MS.gene52349.t1
chr3.1 exon 60538563 60538630 60538563 ID=MS.gene52349.t1.exon4;Parent=MS.gene52349.t1
chr3.1 CDS 60538563 60538630 60538563 ID=cds.MS.gene52349.t1;Parent=MS.gene52349.t1
Gene Sequence

>MS.gene52349

ATGATTGGTGGTGTCATGTTCTCAGTTTGGTCTGTTCCTTTCCGTTCTCTTCGTCTCTGTGACGCTATACCAACTTGTAGGAGTGTAGATAGTATAAAGGAGCACGATGAGCTTGGAGGGATGGCAGCTAGGGGACGAAGGAGGTTCTTCGTGATCTCTCGCAGTACTCTTGCAATTAAGGATATGGCTATTATTTCTTCTTCAGGTTTCAGGAGCATGCTTTGCACTCTTAACCATCAGTTGCTTACGGCCTCATGTGGTATGGCGGTGACTGGTTTTCATCAGAAGGCTCAACCTGGAACAGTGATGCATGGTAGGGTATTTTTGGTATGTTACACTTCAGTTCCTTGCATAGGACTCTTTCTGGCAGATTGCTACAAGTTTTTTCATATTGAATCCAAAAATATATCTCTACATGTTTCTGGAAGCAACCTTCAGGTTATTCTTTTCCATAATAAATTTATTTCTTCTATAAATATGTTTATTGGATTCAATTATATTTGGTGTATATTTTTGAGAGGATATACTTGGCTAGAAAAGTCATTACTTTACTGTCAGCTTATGATTGGAGGATGCATGCTTATATTTTCTTCTCATATCTTGGCTTGTGGCGGTTTATACATGGAAATTGATTGCAAAAATATATTTATTTGGTCCCAAAATATATTGGATATTCAGCTGCAAATTATGTTTCGTAAAGCAAGATTTGTTTGGTTTCTATTGCTGGATATGGGCTTTTTGGTTCAACAGAAGGTTCTAGTATCTATGTTTCATGATTCTATAAATATCATTCAGTGCCAAGGCAGGCTGCTGATTTCCAAACCAGTTCACTTTAATTCGTTTCGTGATCGCATGGCTCAAGTTTGGAAACCTGAACGTAAGGTTGAAATCTCAAGAATTGACAACAATCACTTCATGTTTCAGTTCTTTCATCATAAGGACATGGAACGTGTGATTCGTACTGGTCCTTGGCTATTCGATAACTTCCCTCTAGTGCTGCAGAAAGTCTCCTTCGGTGACGACCCAACAACTACTCCGTTGGACACAATTGAGATGTGGGTTCAAGCTCACAACCTTCCCTTTGGTTTCATGACGGAATCGATGGGTATTCTTCTAGGCAATCACGTTGGTGGGCTTGTTAAGTATGATGCAGAGAACAACTTTGGTTCTTGGAGGAGGTACATGCGTCTCCGTGTTGCTCTGAAGGTTGGAGAACCTCTTGTGGCGAGTTGGGCATTCGAAAGAGAGGGTGCTGCTGCTGTTACTGTGTTTTTTCGTTATGAAAAACTCGGTAACTTTTGTTATGTTTGCGGCAGGTTGGGTCATAACGATAGCTACTGTCCAGATCGTTATGAGGATGATTTTGTTGAAGAAGGCAAGCGTTGGGGACCTATTCTTCGTGCTGAATTCAAGGGCAGCAGTAGCGGAGGGGTTGACAATCAATGGCTTCATGATAGTAGGAAAAGTGGTGGTGAGAATGATGGTGCGATGCATGATGGTATGGGTCCTGCGGTGCATTCTTTCAATCATGCTAAGTTTGGTCGGGTGAAGATTGGGAGGGATTTGGTTACGAAAGTGCTGCTGTTTTTCAAGCTTGTGAATGGTACTTGGGTGACTTTTGATCCAGCAAGGTGTTTTATTGAAGAAAGTGTGCCTCATGTGGTTCCAACAACTTGTAACACTGCTCCAGTTCTGCAGCTTGCTAACAATCATGATCCACAAAGTATTGGTGCAGCTGAAAGTGATGAGGAACGCATTTCCCGATTGGTTCAAGAAGCTAGGCTCAAAAATCCTCTTTCAATTGAGAGTGCTCCGTCCAATTTTGTTTCTACTGCCGCTGGCCAGCCTCCTATTTCAGATTTAACGACATCATTGGCGCACATGCTGAAGGTTGGCCTAAGTGGGATGCCTACTCCGAAAGTTAGTGATGATGGCACAGTTAAGTTTGCTTCCAAAGAACCTAAGCAACTCAAAAGGCTCCGCGTGGAAGAACTCAAGGACACTGTTGAAAAGACTAAGGAAGGTGTTGAGGTGAAAGGCTCTAATGATTCTGATGGTGGTCAAGATACGGCTCGCAAGGATGTTGTTATGAGGGATATGGGATTAGGTGGGATTAATAATGTAATGGCGGGACCTGTACACCAGGCCTGCCAGGGTAAATGAGTCTTATTTGGTGGAACTGTCGGGGTTTAGGTAGCCCGAGCACAGTTCCTAATTTAAAATACCTAGTCCGGACCTATAAACCGGATGCAATAATCCTGTCTGAAACAATGACAACGTCTAATAAAATTGAAGAATTGAAATATATGTTGGCTTTTGATTACTGTTTTTCTGTTGATCGTATTGGTAGGGGAGGTGGTTTGGCTTGTTTATGGAATAAGAACTTTAATTGTAAAATCACGAATTTCTCCCACAATCATATTGATATGGAGGTAACTGACTCTTTGAGGGGAAGATGGCGGTTAACTGGATTTTATGGTATGCCAGAAGGAGGGAGGAGAAGAGAGTCTTGGAACTTACTTCGGCAATTATCCAACATTTCTCAACTTCCTTGGTGTATTATCGGTGATTTTAATGATATTCTGTCAGCCAATGAAAAGAAAGGAAGGTCTGATCGTCAACTGTGGCTTATTCAAGGATTCCGGCAAGCAGTTTTGGATGCTGGGCTTGCTGATATTCATATGGATGGTTATGCTTTCACTTGGTTCAAAAGTCTTGGAACTTCTCACGCTGTGGAGGAGAAATTGGATAGAGCTATGGCAAATGATAGTTGGTTTGATAAATTTCAGAATGCAAAGCTTGAATGTCTTACTACCACATCCTCTGATCACTACCCCCTTTTGTTAGATTGTGTTCCGCAGCCTGCGCCTAGTTCCGGCCAACGTCGATTTCGATTTGAGAATGCGTGGCTTGTTGAACCCGAGTTTGGGCCTTTTGTTTCTCAAAGATGGCAAGGTTATGGTGATCGTCCTATTGTGAATAAACTAAATCAATGTGATGTGGCTCTTTCTAAATGGAGCATGAATACTAACCAAAACACTAGACAAGAGATTCACAAGACTCAACGTAAGCTTGAAGCTATCCGTTCCCATGTGGATGCCTCCAATGTGA
Protein sequence

>MS.gene52349.t1

MIGGVMFSVWSVPFRSLRLCDAIPTCRSVDSIKEHDELGGMAARGRRRFFVISRSTLAIKDMAIISSSGFRSMLCTLNHQLLTASCGMAVTGFHQKAQPGTVMHGRCQGRLLISKPVHFNSFRDRMAQVWKPERKVEISRIDNNHFMFQFFHHKDMERVIRTGPWLFDNFPLVLQKVSFGDDPTTTPLDTIEMWVQAHNLPFGFMTESMGILLGNHVGGLVKYDAENNFGSWRRYMRLRVALKVGEPLVASWAFEREGAAAVTVFFRYEKLGNFCYVCGRLGHNDSYCPDRYEDDFVEEGKRWGPILRAEFKGSSSGGVDNQWLHDSRKSGGENDGAMHDGMGPAVHSFNHAKFGRVKIGRDLVTKVLLFFKLVNGTWVTFDPARCFIEESVPHVVPTTCNTAPVLQLANNHDPQSIGAAESDEERISRLVQEARLKNPLSIESAPSNFVSTAAGQPPISDLTTSLAHMLKVGLSGMPTPKVSDDGTVKFASKEPKQLKRLRVEELKDTVEKTKEGVEVKGSNDSDGGQDTARKDVVMRDMGLDCVPQPAPSSGQRRFRFENAWLVEPEFGPFVSQRWQDKRFTRLNVSLKLSVPMWMPPM