Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069624.t1 | RHN74097.1 | 68.5 | 761 | 126 | 3 | 3 | 652 | 4 | 761 | 9.10E-286 | 993 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069624.t1 | A0A396JG42 | 68.5 | 761 | 126 | 3 | 3 | 652 | 4 | 761 | 6.5e-286 | 993.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069624.t1 | MTR_6g033215 | 34.589 | 292 | 154 | 7 | 121 | 381 | 9 | 294 | 3.01e-52 | 185 |
MS.gene069624.t1 | MTR_0010s0370 | 37.748 | 151 | 91 | 1 | 207 | 357 | 28 | 175 | 3.19e-31 | 121 |
MS.gene069624.t1 | MTR_0010s0350 | 37.748 | 151 | 91 | 1 | 207 | 357 | 28 | 175 | 3.19e-31 | 121 |
MS.gene069624.t1 | MTR_6g052950 | 41.477 | 176 | 84 | 6 | 750 | 921 | 95 | 255 | 3.86e-29 | 118 |
MS.gene069624.t1 | MTR_2g055450 | 65.909 | 88 | 15 | 1 | 652 | 739 | 263 | 335 | 5.96e-27 | 115 |
MS.gene069624.t1 | MTR_3g053920 | 35.172 | 145 | 79 | 1 | 211 | 355 | 31 | 160 | 3.76e-26 | 109 |
MS.gene069624.t1 | MTR_6g065930 | 41.667 | 168 | 73 | 6 | 759 | 922 | 2 | 148 | 4.83e-26 | 108 |
MS.gene069624.t1 | MTR_4g045590 | 40.940 | 149 | 75 | 4 | 780 | 922 | 120 | 261 | 1.93e-24 | 105 |
MS.gene069624.t1 | MTR_2g061500 | 39.394 | 99 | 60 | 0 | 211 | 309 | 31 | 129 | 5.54e-24 | 99.0 |
MS.gene069624.t1 | MTR_0075s0050 | 43.791 | 153 | 68 | 5 | 741 | 891 | 114 | 250 | 9.87e-24 | 104 |
MS.gene069624.t1 | MTR_0414s0030 | 43.590 | 117 | 61 | 2 | 800 | 912 | 1 | 116 | 1.09e-23 | 100 |
MS.gene069624.t1 | MTR_8g463500 | 41.237 | 194 | 77 | 9 | 741 | 926 | 64 | 228 | 1.31e-23 | 105 |
MS.gene069624.t1 | MTR_1g117040 | 44.056 | 143 | 67 | 5 | 752 | 891 | 68 | 200 | 1.54e-23 | 100 |
MS.gene069624.t1 | MTR_3g435910 | 42.857 | 154 | 68 | 5 | 741 | 891 | 57 | 193 | 1.90e-23 | 100 |
MS.gene069624.t1 | MTR_6g471720 | 42.208 | 154 | 65 | 7 | 741 | 891 | 64 | 196 | 3.89e-23 | 100 |
MS.gene069624.t1 | MTR_3g438210 | 45.038 | 131 | 63 | 3 | 762 | 891 | 14 | 136 | 3.90e-23 | 102 |
MS.gene069624.t1 | MTR_6g053230 | 29.208 | 202 | 103 | 3 | 173 | 370 | 6 | 171 | 4.31e-23 | 104 |
MS.gene069624.t1 | MTR_2g071670 | 50.538 | 93 | 43 | 1 | 805 | 897 | 1 | 90 | 5.49e-23 | 94.7 |
MS.gene069624.t1 | MTR_6g464680 | 39.375 | 160 | 78 | 5 | 741 | 899 | 37 | 178 | 5.69e-23 | 102 |
MS.gene069624.t1 | MTR_7g045307 | 40.127 | 157 | 67 | 5 | 740 | 891 | 37 | 171 | 7.97e-23 | 100 |
MS.gene069624.t1 | MTR_0042s0120 | 44.805 | 154 | 65 | 6 | 741 | 891 | 211 | 347 | 1.40e-22 | 102 |
MS.gene069624.t1 | MTR_8g465200 | 38.346 | 133 | 77 | 2 | 790 | 922 | 6 | 133 | 3.79e-22 | 95.5 |
MS.gene069624.t1 | MTR_3g040140 | 43.357 | 143 | 62 | 5 | 756 | 891 | 162 | 292 | 6.85e-22 | 98.6 |
MS.gene069624.t1 | MTR_0485s0050 | 43.902 | 123 | 55 | 2 | 805 | 926 | 1 | 110 | 9.40e-22 | 94.4 |
MS.gene069624.t1 | MTR_7g445650 | 44.211 | 95 | 53 | 0 | 796 | 890 | 1 | 95 | 2.90e-21 | 92.8 |
MS.gene069624.t1 | MTR_3g024240 | 37.398 | 123 | 75 | 1 | 264 | 384 | 55 | 177 | 5.91e-21 | 92.0 |
MS.gene069624.t1 | MTR_7g014910 | 40.881 | 159 | 48 | 7 | 741 | 894 | 78 | 195 | 8.33e-21 | 91.7 |
MS.gene069624.t1 | MTR_6g465890 | 50.617 | 81 | 40 | 0 | 800 | 880 | 1 | 81 | 1.83e-20 | 87.0 |
MS.gene069624.t1 | MTR_4g103530 | 38.710 | 93 | 53 | 1 | 235 | 323 | 1 | 93 | 5.36e-20 | 89.4 |
MS.gene069624.t1 | MTR_7g029380 | 43.119 | 109 | 59 | 1 | 805 | 913 | 1 | 106 | 5.83e-20 | 90.5 |
MS.gene069624.t1 | MTR_0860s0010 | 42.373 | 118 | 63 | 2 | 805 | 922 | 1 | 113 | 4.45e-19 | 85.9 |
MS.gene069624.t1 | MTR_8g468010 | 54.688 | 64 | 29 | 0 | 297 | 360 | 1 | 64 | 1.30e-18 | 83.6 |
MS.gene069624.t1 | MTR_7g035225 | 42.636 | 129 | 55 | 4 | 741 | 866 | 84 | 196 | 1.85e-18 | 87.4 |
MS.gene069624.t1 | MTR_4g020545 | 28.111 | 217 | 97 | 6 | 243 | 452 | 79 | 243 | 6.19e-18 | 85.9 |
MS.gene069624.t1 | MTR_7g011710 | 34.513 | 113 | 71 | 2 | 235 | 345 | 1 | 112 | 1.52e-17 | 81.3 |
MS.gene069624.t1 | MTR_1g032270 | 45.070 | 71 | 39 | 0 | 281 | 351 | 2 | 72 | 2.75e-17 | 80.1 |
MS.gene069624.t1 | MTR_2g054450 | 37.342 | 158 | 65 | 5 | 741 | 898 | 64 | 187 | 3.11e-17 | 84.3 |
MS.gene069624.t1 | MTR_6g465620 | 39.200 | 125 | 63 | 2 | 741 | 865 | 121 | 232 | 4.39e-17 | 82.0 |
MS.gene069624.t1 | MTR_7g445300 | 38.136 | 118 | 68 | 2 | 805 | 922 | 1 | 113 | 5.12e-17 | 81.6 |
MS.gene069624.t1 | MTR_8g107770 | 39.837 | 123 | 64 | 4 | 800 | 922 | 39 | 151 | 5.22e-17 | 81.3 |
MS.gene069624.t1 | MTR_0042s0130 | 42.857 | 91 | 52 | 0 | 652 | 742 | 246 | 336 | 1.32e-16 | 82.8 |
MS.gene069624.t1 | MTR_4g045643 | 42.857 | 84 | 48 | 0 | 790 | 873 | 85 | 168 | 9.73e-15 | 73.6 |
MS.gene069624.t1 | MTR_1g036720 | 42.647 | 68 | 39 | 0 | 216 | 283 | 34 | 101 | 1.03e-14 | 71.6 |
MS.gene069624.t1 | MTR_4g012680 | 43.590 | 117 | 60 | 1 | 775 | 891 | 65 | 175 | 1.42e-14 | 75.9 |
MS.gene069624.t1 | MTR_2g059000 | 64.000 | 50 | 18 | 0 | 841 | 890 | 1 | 50 | 3.94e-14 | 68.6 |
MS.gene069624.t1 | MTR_0117s0100 | 45.977 | 87 | 42 | 3 | 805 | 891 | 1 | 82 | 4.11e-14 | 73.9 |
MS.gene069624.t1 | MTR_2g055140 | 35.338 | 133 | 71 | 3 | 790 | 922 | 96 | 213 | 4.69e-14 | 73.9 |
MS.gene069624.t1 | MTR_2g059010 | 64.000 | 50 | 18 | 0 | 841 | 890 | 1 | 50 | 1.50e-13 | 67.0 |
MS.gene069624.t1 | MTR_1g051330 | 42.353 | 85 | 46 | 1 | 652 | 736 | 364 | 445 | 1.62e-13 | 75.1 |
MS.gene069624.t1 | MTR_0560s0010 | 45.349 | 86 | 43 | 1 | 805 | 890 | 62 | 143 | 2.69e-13 | 72.0 |
MS.gene069624.t1 | MTR_4g057550 | 41.379 | 87 | 48 | 2 | 828 | 914 | 93 | 176 | 3.98e-13 | 69.7 |
MS.gene069624.t1 | MTR_1g015673 | 36.709 | 158 | 84 | 4 | 730 | 887 | 30 | 171 | 5.71e-13 | 70.9 |
MS.gene069624.t1 | MTR_5g464630 | 36.601 | 153 | 74 | 4 | 740 | 887 | 37 | 171 | 2.10e-12 | 68.9 |
MS.gene069624.t1 | MTR_6g034215 | 41.558 | 77 | 45 | 0 | 656 | 732 | 215 | 291 | 2.14e-12 | 69.7 |
MS.gene069624.t1 | MTR_1g100687 | 35.227 | 88 | 56 | 1 | 652 | 738 | 145 | 232 | 3.26e-12 | 67.8 |
MS.gene069624.t1 | MTR_5g048600 | 43.023 | 86 | 41 | 3 | 841 | 926 | 1 | 78 | 5.38e-12 | 62.8 |
MS.gene069624.t1 | MTR_8g463110 | 38.272 | 81 | 50 | 0 | 652 | 732 | 207 | 287 | 8.28e-12 | 69.7 |
MS.gene069624.t1 | MTR_6g033875 | 35.714 | 154 | 48 | 6 | 741 | 891 | 114 | 219 | 1.46e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069624.t1 | AT2G17920 | 24.324 | 185 | 138 | 1 | 216 | 400 | 39 | 221 | 1.28e-15 | 79.3 |
MS.gene069624.t1 | AT5G25200 | 25.000 | 188 | 139 | 1 | 213 | 400 | 36 | 221 | 8.73e-15 | 77.8 |
MS.gene069624.t1 | AT5G18636 | 25.000 | 188 | 139 | 1 | 213 | 400 | 36 | 221 | 9.38e-15 | 77.4 |
MS.gene069624.t1 | AT3G57587 | 23.243 | 185 | 140 | 1 | 216 | 400 | 39 | 221 | 1.35e-14 | 77.0 |
MS.gene069624.t1 | AT3G31430 | 25.824 | 182 | 131 | 1 | 216 | 397 | 134 | 311 | 2.93e-14 | 75.5 |
MS.gene069624.t1 | AT2G02103 | 25.405 | 185 | 136 | 1 | 216 | 400 | 39 | 221 | 4.79e-14 | 75.9 |
MS.gene069624.t1 | AT2G41590 | 23.784 | 185 | 139 | 1 | 216 | 400 | 39 | 221 | 1.24e-13 | 73.9 |
MS.gene069624.t1 | AT5G36228 | 28.188 | 149 | 105 | 1 | 250 | 398 | 73 | 219 | 1.26e-13 | 73.9 |
MS.gene069624.t1 | AT2G01050 | 22.826 | 184 | 136 | 2 | 215 | 398 | 80 | 257 | 5.56e-12 | 69.7 |
Find 260 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAATCTTTCTTCAGGTTTC+AGG | 0.118165 | 3.4:+27273670 | MS.gene069624:CDS |
GCAAAGGTAGGATTGTTATT+AGG | 0.183324 | 3.4:-27279763 | None:intergenic |
TCAGCTGCACAAATACTTTC+TGG | 0.213335 | 3.4:-27275364 | None:intergenic |
CAGAGAATAATTTCGGTTCT+TGG | 0.227069 | 3.4:+27274798 | MS.gene069624:CDS |
AATATATATCTAGATGTTTC+TGG | 0.233510 | 3.4:+27273879 | MS.gene069624:CDS |
GAATCTCTTGTCTGGTGTTC+TGG | 0.263844 | 3.4:-27276634 | None:intergenic |
CAGCAGTAGCTGCCTGCTGT+TGG | 0.275306 | 3.4:-27280035 | None:intergenic |
CTGCCTGCTGTTGGGCCACT+TGG | 0.285996 | 3.4:-27280026 | None:intergenic |
GCAAGGAGGGATGGCAGTTT+GGG | 0.288926 | 3.4:+27273593 | MS.gene069624:CDS |
AGCAAGGAGGGATGGCAGTT+TGG | 0.292251 | 3.4:+27273592 | MS.gene069624:CDS |
TGGCAGATTACTGCAAGTTT+TGG | 0.293942 | 3.4:+27273841 | MS.gene069624:CDS |
TTTGAGTTGTTTAGGTCCTT+TGG | 0.294934 | 3.4:-27275599 | None:intergenic |
GGGTTCGGTTGTGGTTGGCC+TGG | 0.296577 | 3.4:-27280075 | None:intergenic |
GGGATTTGCAGGTGCAGGAC+TGG | 0.310895 | 3.4:-27279788 | None:intergenic |
GATATGGCTAATCTTTCTTC+AGG | 0.313274 | 3.4:+27273663 | MS.gene069624:CDS |
AGCAGTAGCTGCCTGCTGTT+GGG | 0.316031 | 3.4:-27280034 | None:intergenic |
TCCTTGCCTAGCACGCTTCC+TGG | 0.316701 | 3.4:+27273821 | MS.gene069624:CDS |
CAAAGGTAGGATTGTTATTA+GGG | 0.318172 | 3.4:-27279762 | None:intergenic |
GAGCAACAGGGGCTCCTCTT+TGG | 0.330821 | 3.4:-27279825 | None:intergenic |
TGGACTGCTGTTTGGTGGGC+AGG | 0.330967 | 3.4:+27274432 | MS.gene069624:CDS |
CATTATGAGGTAATCGTAAA+AGG | 0.332606 | 3.4:-27274339 | None:intergenic |
CCGCAGCCTGCGCCTAGTTC+CGG | 0.337603 | 3.4:+27276458 | MS.gene069624:CDS |
GGTTCGGTTGTGGTTGGCCT+GGG | 0.346224 | 3.4:-27280074 | None:intergenic |
TCTCAACGTTGGCAAGGTTA+TGG | 0.348172 | 3.4:+27276542 | MS.gene069624:CDS |
CAGTTTGGCCAGGTGAAGAT+AGG | 0.351965 | 3.4:+27275181 | MS.gene069624:CDS |
TCTCCAAACAAACACCTTGC+TGG | 0.351968 | 3.4:-27275271 | None:intergenic |
TGATTTGCTGGACTGCTGTT+TGG | 0.352328 | 3.4:+27274424 | MS.gene069624:CDS |
GTGCTGTGGATCTATCTAAA+TGG | 0.357556 | 3.4:+27276597 | MS.gene069624:CDS |
GGCCTGGGAATGTTCCGGTT+GGG | 0.359065 | 3.4:-27280059 | None:intergenic |
TCTCATCAGAAGGATCATTC+TGG | 0.360305 | 3.4:+27273753 | MS.gene069624:CDS |
TATGATGCAGAGAATAATTT+CGG | 0.362195 | 3.4:+27274791 | MS.gene069624:CDS |
TCTTTCAATCATGCTCAGTT+TGG | 0.363343 | 3.4:+27275166 | MS.gene069624:CDS |
GATCCAGCAAGGTGTTTGTT+TGG | 0.365658 | 3.4:+27275268 | MS.gene069624:CDS |
CAAGCTCACAATCTTCCATT+TGG | 0.366426 | 3.4:+27274710 | MS.gene069624:CDS |
AAATCAGAGTTGGAATTTGC+AGG | 0.368149 | 3.4:-27274407 | None:intergenic |
CCTCTTTGGCCTTGAAAACC+AGG | 0.370491 | 3.4:-27279811 | None:intergenic |
TGTTATGTTTGCGGCCGGTT+GGG | 0.371108 | 3.4:+27274947 | MS.gene069624:CDS |
GAATCAATGGGTTGTCTTCT+CGG | 0.371654 | 3.4:+27274743 | MS.gene069624:CDS |
CCATTGATTGTCAACCCTTC+CGG | 0.376271 | 3.4:-27275071 | None:intergenic |
GGATGGCAGTTTGGGGAAAC+AGG | 0.376789 | 3.4:+27273601 | MS.gene069624:CDS |
ATGATCGTATGGCTCAAGTT+TGG | 0.380226 | 3.4:+27274492 | MS.gene069624:CDS |
TTAGGAACAACAGGAGCAAC+AGG | 0.380459 | 3.4:-27279838 | None:intergenic |
AAATTCCAACTCTGATTTGC+TGG | 0.387140 | 3.4:+27274412 | MS.gene069624:CDS |
GCCTGGGAATGTTCCGGTTG+GGG | 0.391055 | 3.4:-27280058 | None:intergenic |
TGTTTCTGGAAGCAACCTTC+AGG | 0.391835 | 3.4:+27273893 | MS.gene069624:CDS |
GGTGAAGATAGGGAGGGATT+TGG | 0.393225 | 3.4:+27275192 | MS.gene069624:CDS |
GCAGCTACTGCTGCCCCAAC+CGG | 0.394576 | 3.4:+27280045 | MS.gene069624:CDS |
CGAGTTAAAGTGAACCGGTT+TGG | 0.395897 | 3.4:-27274465 | None:intergenic |
GCCTCATATATCACACTTAA+CGG | 0.398097 | 3.4:+27275492 | MS.gene069624:CDS |
TGGTTTCATGACAGAATCAA+TGG | 0.401097 | 3.4:+27274730 | MS.gene069624:CDS |
ATAGCGTTAGCGTGTCCCTT+GGG | 0.401589 | 3.4:-27280096 | None:intergenic |
TTAGGGCGGTTTCTCAATCC+AGG | 0.418867 | 3.4:-27279745 | None:intergenic |
ATCACACTTAACGGCATCAT+TGG | 0.419129 | 3.4:+27275501 | MS.gene069624:CDS |
TTAAGCTTGTGAATGGTACT+TGG | 0.421722 | 3.4:+27275236 | MS.gene069624:CDS |
TATTCTTCGTGCTGAATTCA+AGG | 0.423524 | 3.4:+27275039 | MS.gene069624:CDS |
GGATTTGCAGGTGCAGGACT+GGG | 0.425599 | 3.4:-27279787 | None:intergenic |
TTAGCGTGTCCCTTGGGGTT+CGG | 0.425831 | 3.4:-27280090 | None:intergenic |
GTTAAAATAACTCACATTAG+AGG | 0.426132 | 3.4:-27276702 | None:intergenic |
TTGGTGTTACGTTCTCTGTT+TGG | 0.427317 | 3.4:+27273490 | MS.gene069624:CDS |
ATGTTATGTTTGCGGCCGGT+TGG | 0.427971 | 3.4:+27274946 | MS.gene069624:CDS |
TGTTGAAGAAGGCAAGTGTT+GGG | 0.435153 | 3.4:+27275012 | MS.gene069624:CDS |
TGGTTGGCCTGGGAATGTTC+CGG | 0.441255 | 3.4:-27280064 | None:intergenic |
AGAACCTCTTGTGGCAAGTT+GGG | 0.444489 | 3.4:+27274859 | MS.gene069624:CDS |
GAAGACAATTATGTTGAAGA+AGG | 0.444839 | 3.4:+27275001 | MS.gene069624:CDS |
GGCTTGTTGAACCGGAGTTT+AGG | 0.445721 | 3.4:+27276510 | MS.gene069624:CDS |
AAAGCGAAATCGACGTTGAC+CGG | 0.451856 | 3.4:-27276477 | None:intergenic |
TCTCTAACTCTCACAGCAAC+GGG | 0.452072 | 3.4:-27280150 | None:intergenic |
AGTGTTGTCAGCATGGAAAT+TGG | 0.452467 | 3.4:-27274366 | None:intergenic |
TGTCCCTTGGGGTTCGGTTG+TGG | 0.454917 | 3.4:-27280084 | None:intergenic |
CAGGCTGCTGATTTCCAAAC+CGG | 0.455449 | 3.4:+27274451 | MS.gene069624:CDS |
CCTTGGGGTTCGGTTGTGGT+TGG | 0.456310 | 3.4:-27280080 | None:intergenic |
CTCCACTACCTCCTTAGGCT+TGG | 0.457571 | 3.4:-27280244 | None:intergenic |
GAATGCGTGGCTTGTTGAAC+CGG | 0.457616 | 3.4:+27276502 | MS.gene069624:CDS |
GCCCCAACCGGAACATTCCC+AGG | 0.459143 | 3.4:+27280057 | MS.gene069624:CDS |
ATGCTGAAGGTTGGCCTAAG+TGG | 0.459601 | 3.4:+27275529 | MS.gene069624:CDS |
CAAACTATGCGCAAGGTAAC+CGG | 0.459844 | 3.4:+27279704 | MS.gene069624:CDS |
TGGTGCGGTGCATGATGGCA+TGG | 0.460643 | 3.4:+27275129 | MS.gene069624:CDS |
AAATGAATTGATTAAGCAGT+TGG | 0.460653 | 3.4:+27279948 | MS.gene069624:CDS |
AGGATGTTGTTATGAGGGAT+AGG | 0.463016 | 3.4:+27275725 | MS.gene069624:CDS |
AGTCTTACGAATCTCTTGTC+TGG | 0.465492 | 3.4:-27276642 | None:intergenic |
TCACTCTCCACTACCTCCTT+AGG | 0.466446 | 3.4:-27280249 | None:intergenic |
GAGATTTCGACCTTACGTTC+AGG | 0.467399 | 3.4:-27274518 | None:intergenic |
TGAGGAACGCATTGCACGAT+TGG | 0.468509 | 3.4:+27275393 | MS.gene069624:CDS |
GAATTCAAGGGCAGCAGTAC+CGG | 0.468900 | 3.4:+27275052 | MS.gene069624:CDS |
ATAAATATCATTCAGTATCA+AGG | 0.473958 | 3.4:+27274257 | MS.gene069624:CDS |
CAATCATGCTCAGTTTGGCC+AGG | 0.474608 | 3.4:+27275171 | MS.gene069624:CDS |
CTAGCAAGGATGTTGTTATG+AGG | 0.475625 | 3.4:+27275719 | MS.gene069624:CDS |
GGTAATTTATGTTATGTTTG+CGG | 0.477172 | 3.4:+27274938 | MS.gene069624:CDS |
TTGAATTCAGCACGAAGAAT+AGG | 0.480103 | 3.4:-27275037 | None:intergenic |
GTGTGATCCGTACTGGTCCT+TGG | 0.480218 | 3.4:+27274597 | MS.gene069624:CDS |
TGTCCAACGGAGTAGTTGTT+GGG | 0.482706 | 3.4:-27274670 | None:intergenic |
TGAAACGAGTTAAAGTGAAC+CGG | 0.484016 | 3.4:-27274470 | None:intergenic |
TTCCCAAGTGGCCCAACAGC+AGG | 0.486839 | 3.4:+27280023 | MS.gene069624:CDS |
CCGGAAGGGTTGACAATCAA+TGG | 0.488317 | 3.4:+27275071 | MS.gene069624:CDS |
GTCAAACCTAGAACTTATGA+TGG | 0.489148 | 3.4:+27279864 | MS.gene069624:CDS |
CTGGATCAGTGATGCATGGT+AGG | 0.490003 | 3.4:+27273772 | MS.gene069624:CDS |
GATTCTGTCATGAAACCAAA+TGG | 0.491687 | 3.4:-27274725 | None:intergenic |
AGCTATCATTATGACCCAAC+CGG | 0.491819 | 3.4:-27274961 | None:intergenic |
TGGCCTGGGAATGTTCCGGT+TGG | 0.491895 | 3.4:-27280060 | None:intergenic |
GAGTTGTTTAGGTCCTTTGG+AGG | 0.492404 | 3.4:-27275596 | None:intergenic |
GTTATGAGGGATAGGGGACT+AGG | 0.493668 | 3.4:+27275733 | MS.gene069624:CDS |
TTGCTGGACTGCTGTTTGGT+GGG | 0.495950 | 3.4:+27274428 | MS.gene069624:CDS |
TTTGCTGGACTGCTGTTTGG+TGG | 0.496840 | 3.4:+27274427 | MS.gene069624:CDS |
GTTTCAGTTCTTCCATCGTA+AGG | 0.498528 | 3.4:+27274565 | MS.gene069624:CDS |
GCGTCTCTGTGTTGCTCTGA+AGG | 0.501073 | 3.4:+27274832 | MS.gene069624:CDS |
GTGTCCAACGGAGTAGTTGT+TGG | 0.501180 | 3.4:-27274671 | None:intergenic |
TATAGCGTTAGCGTGTCCCT+TGG | 0.502974 | 3.4:-27280097 | None:intergenic |
CTGCAGCTTGCTCAATCTCA+TGG | 0.505317 | 3.4:+27275340 | MS.gene069624:CDS |
TGCCTGCTGTTGGGCCACTT+GGG | 0.507786 | 3.4:-27280025 | None:intergenic |
GAGAACCTCTTGTGGCAAGT+TGG | 0.510679 | 3.4:+27274858 | MS.gene069624:CDS |
GGTCTTTGTTTCTCATCAGA+AGG | 0.511141 | 3.4:+27273743 | MS.gene069624:CDS |
TAACTCGTTTCATGATCGTA+TGG | 0.513598 | 3.4:+27274481 | MS.gene069624:CDS |
ATGGAGCGTGTGATCCGTAC+TGG | 0.515202 | 3.4:+27274590 | MS.gene069624:CDS |
TATGATGGAAAACTTCGTCT+TGG | 0.515344 | 3.4:+27279879 | MS.gene069624:CDS |
AGAGACAGAGACGTAGGAAA+AGG | 0.517650 | 3.4:+27280168 | MS.gene069624:CDS |
GGCCGTTTGTTTCTCAACGT+TGG | 0.519646 | 3.4:+27276531 | MS.gene069624:CDS |
TCATCACTAACTGTCAGATT+AGG | 0.519740 | 3.4:-27275556 | None:intergenic |
GGAAATTGGAAGCCATTATG+AGG | 0.519847 | 3.4:-27274352 | None:intergenic |
CCGGAACTAGGCGCAGGCTG+CGG | 0.520056 | 3.4:-27276458 | None:intergenic |
GGATGTTGTTATGAGGGATA+GGG | 0.521359 | 3.4:+27275726 | MS.gene069624:CDS |
GGTTTCATGACAGAATCAAT+GGG | 0.523821 | 3.4:+27274731 | MS.gene069624:CDS |
AAGGACCTAAACAACTCAAA+AGG | 0.526078 | 3.4:+27275602 | MS.gene069624:CDS |
TCATAATGATAGCTATTGTC+CGG | 0.526404 | 3.4:+27274970 | MS.gene069624:CDS |
GGCAAACAAAGTTGATGCTA+TGG | 0.526878 | 3.4:+27279969 | MS.gene069624:CDS |
TACTCTAACACGTACAACCC+TGG | 0.527109 | 3.4:+27279727 | MS.gene069624:CDS |
AATCTGACAGTTAGTGATGA+TGG | 0.527325 | 3.4:+27275559 | MS.gene069624:CDS |
GCGTACGGTCTCATGTGGTA+TGG | 0.528408 | 3.4:+27273722 | MS.gene069624:CDS |
TGATTGAAAGAAAGCGCCAC+TGG | 0.529078 | 3.4:-27275154 | None:intergenic |
CTGACAACACTGCTGCCAAT+CGG | 0.530645 | 3.4:+27274378 | MS.gene069624:CDS |
ATTTATGTTATGTTTGCGGC+CGG | 0.532451 | 3.4:+27274942 | MS.gene069624:CDS |
TACTAGTCATAAGGTGCGTA+CGG | 0.533773 | 3.4:+27273707 | MS.gene069624:CDS |
TAAGCTTGTGAATGGTACTT+GGG | 0.533951 | 3.4:+27275237 | MS.gene069624:CDS |
TTCTGATGGTGGTCAAGATA+CGG | 0.534188 | 3.4:+27275696 | MS.gene069624:CDS |
AATCGACGTTGACCGGAACT+AGG | 0.537524 | 3.4:-27276470 | None:intergenic |
ATCAATGGCTTCATGATAGT+AGG | 0.538858 | 3.4:+27275086 | MS.gene069624:CDS |
CAACCACAACCGAACCCCAA+GGG | 0.539340 | 3.4:+27280081 | MS.gene069624:CDS |
GTCTCTAACTCTCACAGCAA+CGG | 0.541238 | 3.4:-27280151 | None:intergenic |
CGACCCAACAACTACTCCGT+TGG | 0.543637 | 3.4:+27274667 | MS.gene069624:CDS |
ATGTTGAAGAAGGCAAGTGT+TGG | 0.544754 | 3.4:+27275011 | MS.gene069624:CDS |
TAGGCTTGGATGTTTGCCCA+TGG | 0.545141 | 3.4:-27280230 | None:intergenic |
TTAAGTGTGATATATGAGGC+TGG | 0.546193 | 3.4:-27275489 | None:intergenic |
CTTCTCGGCAGTCACGTTGG+TGG | 0.548374 | 3.4:+27274758 | MS.gene069624:CDS |
AATCTGCCAGGAAGCGTGCT+AGG | 0.550585 | 3.4:-27273827 | None:intergenic |
GCCAGGAAGCGTGCTAGGCA+AGG | 0.551631 | 3.4:-27273822 | None:intergenic |
GAAAGTGCTCCGTCCGATGT+TGG | 0.555466 | 3.4:+27275451 | MS.gene069624:CDS |
GGTTGTACGTGTTAGAGTAC+CGG | 0.555921 | 3.4:-27279723 | None:intergenic |
AAAACTTGCAGTAATCTGCC+AGG | 0.556099 | 3.4:-27273839 | None:intergenic |
TAATTGTCTTCATAACGATC+CGG | 0.556135 | 3.4:-27274989 | None:intergenic |
GCAGTCCAGCAAATCAGAGT+TGG | 0.556170 | 3.4:-27274417 | None:intergenic |
CCAACCACAACCGAACCCCA+AGG | 0.556746 | 3.4:+27280080 | MS.gene069624:CDS |
CGTTGGACACAATTGAGATG+TGG | 0.557419 | 3.4:+27274684 | MS.gene069624:CDS |
GAGACTTTCTGCAGCACTAG+AGG | 0.560388 | 3.4:-27274635 | None:intergenic |
TTTGTTTCTCAACGTTGGCA+AGG | 0.562039 | 3.4:+27276536 | MS.gene069624:CDS |
TAGTGATTGTGTCGAATGAT+TGG | 0.564001 | 3.4:+27273471 | None:intergenic |
TGGCAGCAGTGTTGTCAGCA+TGG | 0.564199 | 3.4:-27274373 | None:intergenic |
TGATTGAGTTTATTCACAAG+AGG | 0.564259 | 3.4:-27276572 | None:intergenic |
AGGAACATGATGAGCAAGGA+GGG | 0.565067 | 3.4:+27273580 | MS.gene069624:CDS |
CTCTTTGGCCTTGAAAACCA+GGG | 0.565908 | 3.4:-27279810 | None:intergenic |
ATTTGCAGGAGCAGACCGAT+TGG | 0.566589 | 3.4:-27274393 | None:intergenic |
AGTTTGGCCAGGTGAAGATA+GGG | 0.568138 | 3.4:+27275182 | MS.gene069624:CDS |
GGTGCGGTGCATGATGGCAT+GGG | 0.568896 | 3.4:+27275130 | MS.gene069624:CDS |
AGTTGTTGGGTCGTCACTGA+AGG | 0.570402 | 3.4:-27274657 | None:intergenic |
GACTTCGACAGAGGAACTAA+AGG | 0.572059 | 3.4:+27281055 | MS.gene069624:intron |
AGACTTTCTGCAGCACTAGA+GGG | 0.572489 | 3.4:-27274634 | None:intergenic |
GCAGGACTGGGCGCAAAGGT+AGG | 0.572792 | 3.4:-27279775 | None:intergenic |
GTTCTTCCATCGTAAGGACA+TGG | 0.572999 | 3.4:+27274571 | MS.gene069624:CDS |
TGGAGAAAGTGTACCGCAAG+TGG | 0.574007 | 3.4:+27275288 | MS.gene069624:CDS |
CTCTGTGTTGCTCTGAAGGT+AGG | 0.575298 | 3.4:+27274836 | MS.gene069624:CDS |
TGATATATGAGGCTGGGCAG+CGG | 0.575443 | 3.4:-27275482 | None:intergenic |
ACATGATGAGCAAGGAGGGA+TGG | 0.576695 | 3.4:+27273584 | MS.gene069624:CDS |
CACGATTGGTTCAAGAAGCT+AGG | 0.577031 | 3.4:+27275407 | MS.gene069624:CDS |
ATGAGGTAATCGTAAAAGGT+AGG | 0.577359 | 3.4:-27274335 | None:intergenic |
GATGTTGTTATGAGGGATAG+GGG | 0.577539 | 3.4:+27275727 | MS.gene069624:CDS |
GAGAATGAACTCGTTGACCA+TGG | 0.577649 | 3.4:+27280213 | MS.gene069624:CDS |
TCAGATTAGGCATCCCACTT+AGG | 0.581025 | 3.4:-27275543 | None:intergenic |
TGGTCAAGATACGGCTAGCA+AGG | 0.581487 | 3.4:+27275705 | MS.gene069624:CDS |
AATGCCCAACTTGCCACAAG+AGG | 0.583077 | 3.4:-27274863 | None:intergenic |
GTTGAAGAAGGCAAGTGTTG+GGG | 0.583605 | 3.4:+27275013 | MS.gene069624:CDS |
CAAAGAGCCAAGGACCAGTA+CGG | 0.584112 | 3.4:-27274604 | None:intergenic |
TGCCAACGTTGAGAAACAAA+CGG | 0.584442 | 3.4:-27276533 | None:intergenic |
ATCATTGGCGCATATGCTGA+AGG | 0.584783 | 3.4:+27275516 | MS.gene069624:CDS |
GGCTCTAATGATTCTGATGG+TGG | 0.586250 | 3.4:+27275685 | MS.gene069624:CDS |
TAGCAAGGATGTTGTTATGA+GGG | 0.587562 | 3.4:+27275720 | MS.gene069624:CDS |
TAAGTGTGATATATGAGGCT+GGG | 0.588125 | 3.4:-27275488 | None:intergenic |
TGGGCAAACATCCAAGCCTA+AGG | 0.590011 | 3.4:+27280233 | MS.gene069624:CDS |
CGTTGACCGGAACTAGGCGC+AGG | 0.590793 | 3.4:-27276464 | None:intergenic |
TAGGGCGGTTTCTCAATCCA+GGG | 0.592090 | 3.4:-27279744 | None:intergenic |
TGCAATTTGATTGAGTGTGA+AGG | 0.592296 | 3.4:-27274283 | None:intergenic |
ACAACTCAAAAGGCTCCGCA+TGG | 0.592337 | 3.4:+27275612 | MS.gene069624:CDS |
AGTTTGGAAACCTGAACGTA+AGG | 0.592438 | 3.4:+27274508 | MS.gene069624:CDS |
ATGATGCTTTACCAACATGT+AGG | 0.592522 | 3.4:+27273541 | MS.gene069624:CDS |
AGGTGCAGGACTGGGCGCAA+AGG | 0.594029 | 3.4:-27279779 | None:intergenic |
GTTGGACACAATTGAGATGT+GGG | 0.594572 | 3.4:+27274685 | MS.gene069624:CDS |
TTGGCGCATATGCTGAAGGT+TGG | 0.594650 | 3.4:+27275520 | MS.gene069624:CDS |
AGAATGAACTCGTTGACCAT+GGG | 0.595250 | 3.4:+27280214 | MS.gene069624:CDS |
TAGCGTTAGCGTGTCCCTTG+GGG | 0.596624 | 3.4:-27280095 | None:intergenic |
AAGTTGGGCATTTGAAAGAG+AGG | 0.599171 | 3.4:+27274874 | MS.gene069624:CDS |
ATTCTTCGTGCTGAATTCAA+GGG | 0.599382 | 3.4:+27275040 | MS.gene069624:CDS |
TGGATCAGTGATGCATGGTA+GGG | 0.601776 | 3.4:+27273773 | MS.gene069624:CDS |
TCAAGGGCAGCAGTACCGGA+AGG | 0.602928 | 3.4:+27275056 | MS.gene069624:CDS |
TGTCTTCTCGGCAGTCACGT+TGG | 0.603088 | 3.4:+27274755 | MS.gene069624:CDS |
CACATCTCAATTGTGTCCAA+CGG | 0.604596 | 3.4:-27274683 | None:intergenic |
GGAGCACTTTCAATTGAGAG+AGG | 0.605273 | 3.4:-27275439 | None:intergenic |
AATCCCTCCCTATCTTCACC+TGG | 0.607008 | 3.4:-27275189 | None:intergenic |
GGACACTGTTGAGAAGACTA+AGG | 0.607998 | 3.4:+27275645 | MS.gene069624:CDS |
AGCAATGGTGCGGTGCATGA+TGG | 0.610986 | 3.4:+27275124 | MS.gene069624:CDS |
AAAGGCTCTAATGATTCTGA+TGG | 0.611789 | 3.4:+27275682 | MS.gene069624:CDS |
CAAGGAGGGATGGCAGTTTG+GGG | 0.612120 | 3.4:+27273594 | MS.gene069624:CDS |
AAGGAAGGTGTTGAGATGAA+AGG | 0.613427 | 3.4:+27275664 | MS.gene069624:CDS |
GGTAATCGTAAAAGGTAGGA+AGG | 0.614541 | 3.4:-27274331 | None:intergenic |
TGCTGAAGGTTGGCCTAAGT+GGG | 0.618386 | 3.4:+27275530 | MS.gene069624:CDS |
TAGAGGCATCCACATGGGAA+CGG | 0.619278 | 3.4:-27276685 | None:intergenic |
AGAATAATTTCGGTTCTTGG+AGG | 0.619410 | 3.4:+27274801 | MS.gene069624:CDS |
CACATTAGAGGCATCCACAT+GGG | 0.621494 | 3.4:-27276690 | None:intergenic |
ACAGTTAAGATTACCTCCAA+AGG | 0.624589 | 3.4:+27275583 | MS.gene069624:CDS |
AGAGTTAGAGACAGAGACGT+AGG | 0.625447 | 3.4:+27280162 | MS.gene069624:CDS |
GGGAAGTTATCAAAGAGCCA+AGG | 0.626900 | 3.4:-27274614 | None:intergenic |
AACGCTATAACGCTTCGAAG+CGG | 0.630093 | 3.4:+27280111 | MS.gene069624:CDS |
CTTCATGATAGTAGGAAGAG+TGG | 0.630322 | 3.4:+27275094 | MS.gene069624:CDS |
TGGCAGTTTGGGGAAACAGG+AGG | 0.631897 | 3.4:+27273604 | MS.gene069624:CDS |
TCTTTGGCCTTGAAAACCAG+GGG | 0.632773 | 3.4:-27279809 | None:intergenic |
GCATGATGGCATGGGTCCAG+TGG | 0.632845 | 3.4:+27275138 | MS.gene069624:CDS |
CTTTGGCCTTGAAAACCAGG+GGG | 0.635762 | 3.4:-27279808 | None:intergenic |
CATTCTGGATCAGTGATGCA+TGG | 0.636659 | 3.4:+27273768 | MS.gene069624:CDS |
TTGGCCAGGTGAAGATAGGG+AGG | 0.637253 | 3.4:+27275185 | MS.gene069624:CDS |
GAAGGTAGGAGAACCTCTTG+TGG | 0.637884 | 3.4:+27274850 | MS.gene069624:CDS |
TTAAGTGCAAGAAAACTGCA+AGG | 0.637918 | 3.4:-27273639 | None:intergenic |
GATCAGGCAAACTATGCGCA+AGG | 0.638087 | 3.4:+27279697 | MS.gene069624:intron |
TAGGAGTATAGATGTTACAA+AGG | 0.638418 | 3.4:+27273560 | MS.gene069624:CDS |
AGTTGGGCATTTGAAAGAGA+GGG | 0.638703 | 3.4:+27274875 | MS.gene069624:CDS |
AGGAACAACAGGAGCAACAG+GGG | 0.641685 | 3.4:-27279836 | None:intergenic |
TAAACTCAATCAATGTGCTG+TGG | 0.644542 | 3.4:+27276583 | MS.gene069624:CDS |
GAAACAAACGGCCTAAACTC+CGG | 0.645383 | 3.4:-27276521 | None:intergenic |
CACGCTCCATGTCCTTACGA+TGG | 0.647172 | 3.4:-27274577 | None:intergenic |
ACAAAGGAACATGATGAGCA+AGG | 0.647269 | 3.4:+27273576 | MS.gene069624:CDS |
ACTGTTGAGAAGACTAAGGA+AGG | 0.648597 | 3.4:+27275649 | MS.gene069624:CDS |
CAAGGGCAGCAGTACCGGAA+GGG | 0.649436 | 3.4:+27275057 | MS.gene069624:CDS |
TAGAGGCGAGAAGAAAGTAA+CGG | 0.649688 | 3.4:-27273519 | None:intergenic |
TAGGAACAACAGGAGCAACA+GGG | 0.654187 | 3.4:-27279837 | None:intergenic |
GATTTCGCTTTGAGAATGCG+TGG | 0.655028 | 3.4:+27276489 | MS.gene069624:CDS |
ACATCTATACTCCTACATGT+TGG | 0.657176 | 3.4:-27273552 | None:intergenic |
AAGGTGCGTACGGTCTCATG+TGG | 0.658060 | 3.4:+27273717 | MS.gene069624:CDS |
GCTCCGCATGGAAGAACTCG+AGG | 0.659574 | 3.4:+27275624 | MS.gene069624:CDS |
TCACATTAGAGGCATCCACA+TGG | 0.661566 | 3.4:-27276691 | None:intergenic |
AGGTAGGATTGTTATTAGGG+CGG | 0.664256 | 3.4:-27279759 | None:intergenic |
GCAAACATCCAAGCCTAAGG+AGG | 0.667086 | 3.4:+27280236 | MS.gene069624:CDS |
TAAGTGCAAGAAAACTGCAA+GGG | 0.667138 | 3.4:-27273638 | None:intergenic |
TGGCCAGGTGAAGATAGGGA+GGG | 0.667306 | 3.4:+27275186 | MS.gene069624:CDS |
ATGTTGGTAAAGCATCATAG+AGG | 0.667837 | 3.4:-27273536 | None:intergenic |
TGAAGCTATCCGTTCCCATG+TGG | 0.672727 | 3.4:+27276676 | MS.gene069624:CDS |
AGAAACGCAGATTTCCCAAG+TGG | 0.675451 | 3.4:+27280011 | MS.gene069624:CDS |
CATGATAGTAGGAAGAGTGG+TGG | 0.681655 | 3.4:+27275097 | MS.gene069624:CDS |
GCCGTTAAGTGTGATATATG+AGG | 0.683764 | 3.4:-27275493 | None:intergenic |
AAGAGTGGTGGTGAGAGCAA+TGG | 0.684123 | 3.4:+27275109 | MS.gene069624:CDS |
GTATTAGAACCAACATCGGA+CGG | 0.684945 | 3.4:-27275460 | None:intergenic |
AGCGGTATTAGAACCAACAT+CGG | 0.697326 | 3.4:-27275464 | None:intergenic |
TTGTGCAGCTGAAAGTGATG+AGG | 0.702639 | 3.4:+27275375 | MS.gene069624:CDS |
AAGGAACATGATGAGCAAGG+AGG | 0.709557 | 3.4:+27273579 | MS.gene069624:CDS |
TGGTGGTGAGAGCAATGGTG+CGG | 0.715089 | 3.4:+27275114 | MS.gene069624:CDS |
TGTCCTCGAGTTCTTCCATG+CGG | 0.726264 | 3.4:-27275627 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 27273486 | 27281074 | 27273486 | ID=MS.gene069624 |
chr3.4 | mRNA | 27273486 | 27281074 | 27273486 | ID=MS.gene069624.t1;Parent=MS.gene069624 |
chr3.4 | exon | 27273486 | 27273914 | 27273486 | ID=MS.gene069624.t1.exon1;Parent=MS.gene069624.t1 |
chr3.4 | CDS | 27273486 | 27273914 | 27273486 | ID=cds.MS.gene069624.t1;Parent=MS.gene069624.t1 |
chr3.4 | exon | 27274227 | 27275754 | 27274227 | ID=MS.gene069624.t1.exon2;Parent=MS.gene069624.t1 |
chr3.4 | CDS | 27274227 | 27275754 | 27274227 | ID=cds.MS.gene069624.t1;Parent=MS.gene069624.t1 |
chr3.4 | exon | 27276450 | 27276709 | 27276450 | ID=MS.gene069624.t1.exon3;Parent=MS.gene069624.t1 |
chr3.4 | CDS | 27276450 | 27276709 | 27276450 | ID=cds.MS.gene069624.t1;Parent=MS.gene069624.t1 |
chr3.4 | exon | 27279703 | 27280257 | 27279703 | ID=MS.gene069624.t1.exon4;Parent=MS.gene069624.t1 |
chr3.4 | CDS | 27279703 | 27280257 | 27279703 | ID=cds.MS.gene069624.t1;Parent=MS.gene069624.t1 |
chr3.4 | exon | 27281066 | 27281074 | 27281066 | ID=MS.gene069624.t1.exon5;Parent=MS.gene069624.t1 |
chr3.4 | CDS | 27281066 | 27281074 | 27281066 | ID=cds.MS.gene069624.t1;Parent=MS.gene069624.t1 |
Gene Sequence |
Protein sequence |