AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025987


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025987.t1 MTR_3g053920 38.144 194 85 3 1 170 1 183 7.92e-42 146
MS.gene025987.t1 MTR_2g061500 49.606 127 41 1 1 104 1 127 4.62e-37 129
MS.gene025987.t1 MTR_4g103530 41.667 72 33 2 34 104 10 73 8.92e-13 66.2
MS.gene025987.t1 MTR_7g011710 62.500 40 15 0 65 104 34 73 1.17e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 100 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATAAAGTCTCATATTT+TGG 0.146849 7.1:-1737242 MS.gene025987:CDS
AGGAACGTATGGGGCATATT+TGG 0.238652 7.1:-1737984 MS.gene025987:CDS
TCCTCCATTTCAAACCTATT+CGG 0.284862 7.1:+1737493 None:intergenic
TGATTCAAATTGACGCTTGC+TGG 0.292360 7.1:+1737805 None:intergenic
GTCAAGTGTTGCTGGGGATA+TGG 0.297582 7.1:-1736924 MS.gene025987:CDS
TAAGAAGCGCAAGCGTATAA+AGG 0.310256 7.1:-1736993 MS.gene025987:CDS
ATTCTTGATCACTGCTTAAT+AGG 0.316199 7.1:-1738048 MS.gene025987:CDS
CTGTTATCTGTGTGGTCTGT+TGG 0.320720 7.1:-1737536 MS.gene025987:CDS
CCTCCATTTCAAACCTATTC+GGG 0.344988 7.1:+1737494 None:intergenic
AAACCAGTGGTAAGGCGTTT+AGG 0.369074 7.1:-1737436 MS.gene025987:intron
ATTTGAATCATCTGGACATA+TGG 0.369587 7.1:-1737792 MS.gene025987:CDS
CTGTTAAGGTGAGGCCTTGA+AGG 0.386785 7.1:+1738118 None:intergenic
GATGTAGTGTCAAGTGTTGC+TGG 0.386829 7.1:-1736932 MS.gene025987:CDS
TGTTATCTGTGTGGTCTGTT+GGG 0.391407 7.1:-1737535 MS.gene025987:CDS
GCTATGTCAGGTGTCTCTAC+AGG 0.401628 7.1:-1737079 MS.gene025987:CDS
TAGGTACTGATGTTAGTAAT+GGG 0.404095 7.1:-1736889 MS.gene025987:CDS
AGGTCCTGGAGGAGGGGCCG+TGG 0.406456 7.1:-1737879 MS.gene025987:CDS
GATTCGTTTCAATTACTTCA+AGG 0.410002 7.1:-1738004 MS.gene025987:CDS
GTCTCTGCCGCGACTCACTA+TGG 0.418221 7.1:-1737140 MS.gene025987:CDS
TTATACGCTTGCGCTTCTTA+AGG 0.420511 7.1:+1736996 None:intergenic
AGTTTAAGTATGAAAAGCTT+GGG 0.420862 7.1:-1737564 MS.gene025987:CDS
AGTCAATCCTTCATCTGTTA+AGG 0.421004 7.1:+1738104 None:intergenic
CTGACAAGACCTGCCCGAAT+AGG 0.423285 7.1:-1737507 MS.gene025987:CDS
GTCGCGGCAGAGACCGAGTT+TGG 0.429274 7.1:+1737149 None:intergenic
AGCGCAAGAACGAGTGGATT+AGG 0.435665 7.1:+1737106 None:intergenic
AGAGCCACGGCCCCTCCTCC+AGG 0.445767 7.1:+1737875 None:intergenic
AGGTGAGGCCTTGAAGGTTA+AGG 0.446133 7.1:+1738124 None:intergenic
TGAAGGATTGACTCTCAATC+TGG 0.446501 7.1:-1738094 MS.gene025987:CDS
CAATTACTTCAAGGAACGTA+TGG 0.447480 7.1:-1737995 MS.gene025987:CDS
AAGCGTCAATTTGAATCATC+TGG 0.454920 7.1:-1737800 MS.gene025987:CDS
CGAGTTTGGTTTGTTCCGCT+TGG 0.456653 7.1:+1737163 None:intergenic
ACTGCTGACCTTAACCTTCA+AGG 0.458508 7.1:-1738132 MS.gene025987:CDS
AAGAAGCGCAAGCGTATAAA+GGG 0.462842 7.1:-1736992 MS.gene025987:CDS
TCAAGTGTTGCTGGGGATAT+GGG 0.469433 7.1:-1736923 MS.gene025987:CDS
CTGCCCGAATAGGTTTGAAA+TGG 0.473016 7.1:-1737497 MS.gene025987:CDS
CTGCTGGAAACTTAGCTGCT+GGG 0.473596 7.1:-1737321 MS.gene025987:intron
CGTTGCAAAGGTCCTGGAGG+AGG 0.474381 7.1:-1737887 MS.gene025987:intron
ATGGGGCATATTTGGAGGCC+AGG 0.482147 7.1:-1737976 MS.gene025987:CDS
TTTGAATCATCTGGACATAT+GGG 0.486363 7.1:-1737791 MS.gene025987:CDS
ATGTAGTGTCAAGTGTTGCT+GGG 0.501530 7.1:-1736931 MS.gene025987:CDS
ACGCTTGCTGGAACAACTCC+AGG 0.505536 7.1:+1737817 None:intergenic
CAGTTTAAGTATGAAAAGCT+TGG 0.505746 7.1:-1737565 MS.gene025987:CDS
CTTGCGCTACCAGCTATGTC+AGG 0.506354 7.1:-1737091 MS.gene025987:CDS
GGCCTCACCTTAACAGATGA+AGG 0.509460 7.1:-1738111 MS.gene025987:CDS
TCAGAAAAGAGGGCGCTGGC+AGG 0.511263 7.1:-1737295 MS.gene025987:CDS
GACAACGGTATACGTGGATG+GGG 0.513083 7.1:-1737469 MS.gene025987:CDS
CTATGTCAGGTGTCTCTACA+GGG 0.517024 7.1:-1737078 MS.gene025987:CDS
CATTTCAAACCTATTCGGGC+AGG 0.517796 7.1:+1737498 None:intergenic
AGGACAACGGTATACGTGGA+TGG 0.520019 7.1:-1737471 MS.gene025987:CDS
AAGTAAGTCTTTGACAGATG+TGG 0.526134 7.1:-1737191 MS.gene025987:CDS
GTTGCAAAGGTCCTGGAGGA+GGG 0.526427 7.1:-1737886 MS.gene025987:intron
CTTAAACTGCATTGTCGCAT+AGG 0.529353 7.1:+1737579 None:intergenic
GCCATCAGAAAAGAGGGCGC+TGG 0.538453 7.1:-1737299 MS.gene025987:CDS
GTGGTGGAACGTATTGCTCC+TGG 0.539348 7.1:-1737835 MS.gene025987:CDS
AATTACTTCAAGGAACGTAT+GGG 0.540598 7.1:-1737994 MS.gene025987:CDS
GTGATGGTAACACGTTTCCC+TGG 0.544874 7.1:+1737958 None:intergenic
GTAGGTACTGATGTTAGTAA+TGG 0.549070 7.1:-1736890 MS.gene025987:CDS
GTACCTAAACGCCTTACCAC+TGG 0.552187 7.1:+1737433 None:intergenic
CTGCTGGGCCATCAGAAAAG+AGG 0.553024 7.1:-1737306 MS.gene025987:CDS
AACGTATGGGGCATATTTGG+AGG 0.553470 7.1:-1737981 MS.gene025987:CDS
CCCGAATAGGTTTGAAATGG+AGG 0.558785 7.1:-1737494 MS.gene025987:CDS
GTAGAGACACCTGACATAGC+TGG 0.559119 7.1:+1737082 None:intergenic
GGACAACGGTATACGTGGAT+GGG 0.560320 7.1:-1737470 MS.gene025987:CDS
AATGGCTGAAACCAGTGGTA+AGG 0.570704 7.1:-1737444 MS.gene025987:CDS
CAAGCGGAACAAACCAAACT+CGG 0.573520 7.1:-1737162 MS.gene025987:CDS
TGCTGGGCCATCAGAAAAGA+GGG 0.583468 7.1:-1737305 MS.gene025987:CDS
TCATCTGGACATATGGGTGC+AGG 0.592215 7.1:-1737785 MS.gene025987:intron
GGTACTGATGTTAGTAATGG+GGG 0.594236 7.1:-1736887 MS.gene025987:CDS
TGATAACTACAACATGGTGG+TGG 0.594242 7.1:-1737851 MS.gene025987:CDS
ACAACGGTATACGTGGATGG+GGG 0.595348 7.1:-1737468 MS.gene025987:CDS
CAACGGTATACGTGGATGGG+GGG 0.601853 7.1:-1737467 MS.gene025987:CDS
TAACTCTTCTGCTACTGCTG+TGG 0.602863 7.1:-1737050 MS.gene025987:CDS
TGGGGCATATTTGGAGGCCA+GGG 0.608005 7.1:-1737975 MS.gene025987:CDS
TTGCAAAGGTCCTGGAGGAG+GGG 0.610498 7.1:-1737885 MS.gene025987:intron
GTTAAGGTCAGCAGTAGACA+TGG 0.613037 7.1:+1738140 None:intergenic
GAATAGGTTTGAAATGGAGG+AGG 0.616184 7.1:-1737491 MS.gene025987:CDS
ATTACTAACATCAGTACCTA+CGG 0.617804 7.1:+1736892 None:intergenic
GCTGGTAGCGCAAGAACGAG+TGG 0.620176 7.1:+1737100 None:intergenic
ATCCTTCATCTGTTAAGGTG+AGG 0.620666 7.1:+1738109 None:intergenic
AAGAATTTGAGTAGCATCAG+TGG 0.622026 7.1:+1738065 None:intergenic
AGGTACTGATGTTAGTAATG+GGG 0.634143 7.1:-1736888 MS.gene025987:CDS
GGGGTGTTCTGTTATCTGTG+TGG 0.635538 7.1:-1737544 MS.gene025987:CDS
TGGCAGATTCGAGTGAATGA+CGG 0.637045 7.1:-1737604 MS.gene025987:intron
ATTACTTCAAGGAACGTATG+GGG 0.639604 7.1:-1737993 MS.gene025987:CDS
GAGGAGGACAACGGTATACG+TGG 0.643853 7.1:-1737475 MS.gene025987:CDS
ACAGATGTGGCTTCACCAAG+CGG 0.646811 7.1:-1737178 MS.gene025987:CDS
GTACTGATGTTAGTAATGGG+GGG 0.648224 7.1:-1736886 MS.gene025987:CDS
GATATGGGAAAATTTGCCGT+AGG 0.653383 7.1:-1736908 MS.gene025987:CDS
ATGTCAGGTGTCTCTACAGG+GGG 0.654305 7.1:-1737076 MS.gene025987:CDS
TACTGCTGTGGACGACAATG+AGG 0.655338 7.1:-1737038 MS.gene025987:CDS
TGAGTCTCCATAGTGAGTCG+CGG 0.674256 7.1:+1737133 None:intergenic
TTGTAGTTATCATAGAGCCA+CGG 0.675083 7.1:+1737862 None:intergenic
GTTTAAGTATGAAAAGCTTG+GGG 0.676485 7.1:-1737563 MS.gene025987:CDS
TTTGAAATGGAGGAGGACAA+CGG 0.692804 7.1:-1737484 MS.gene025987:CDS
TATGTCAGGTGTCTCTACAG+GGG 0.700838 7.1:-1737077 MS.gene025987:CDS
TGTAGTGTCAAGTGTTGCTG+GGG 0.700918 7.1:-1736930 MS.gene025987:CDS
TGACGTTGCAAAGGTCCTGG+AGG 0.711182 7.1:-1737890 MS.gene025987:intron
GCTCTATGATAACTACAACA+TGG 0.711588 7.1:-1737857 MS.gene025987:CDS
CTATGATAACTACAACATGG+TGG 0.722488 7.1:-1737854 MS.gene025987:CDS
CGACAATGAGGATGTCACTG+TGG 0.777920 7.1:-1737026 MS.gene025987:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGTACAGAAAAAAATC+AGG + chr7.1:1737090-1737109 None:intergenic 20.0%
!!! ATTTTGATAGAGAATTAAGT+TGG + chr7.1:1737800-1737819 None:intergenic 20.0%
!!! TTCTATAAAGTCTCATATTT+TGG - chr7.1:1737770-1737789 MS.gene025987:intron 20.0%
!!! TTTTGATAGAGAATTAAGTT+GGG + chr7.1:1737799-1737818 None:intergenic 20.0%
! AGTTTAAGTATGAAAAGCTT+GGG - chr7.1:1737448-1737467 MS.gene025987:CDS 25.0%
AAAAAAATCAGGTTCAGCTT+GGG + chr7.1:1737079-1737098 None:intergenic 30.0%
AATTACTTCAAGGAACGTAT+GGG - chr7.1:1737018-1737037 MS.gene025987:CDS 30.0%
ATTACTAACATCAGTACCTA+CGG + chr7.1:1738123-1738142 None:intergenic 30.0%
ATTCTTGATCACTGCTTAAT+AGG - chr7.1:1736964-1736983 MS.gene025987:CDS 30.0%
ATTTGAATCATCTGGACATA+TGG - chr7.1:1737220-1737239 MS.gene025987:CDS 30.0%
CAGTTTAAGTATGAAAAGCT+TGG - chr7.1:1737447-1737466 MS.gene025987:CDS 30.0%
CTCATCATAGTTCTTATATG+CGG - chr7.1:1737343-1737362 MS.gene025987:intron 30.0%
GATTCGTTTCAATTACTTCA+AGG - chr7.1:1737008-1737027 MS.gene025987:CDS 30.0%
GTTTAAGTATGAAAAGCTTG+GGG - chr7.1:1737449-1737468 MS.gene025987:CDS 30.0%
TTTGAATCATCTGGACATAT+GGG - chr7.1:1737221-1737240 MS.gene025987:CDS 30.0%
!! TAGGTACTGATGTTAGTAAT+GGG - chr7.1:1738123-1738142 MS.gene025987:CDS 30.0%
AAGAATTTGAGTAGCATCAG+TGG + chr7.1:1736950-1736969 None:intergenic 35.0%
AAGACTACAACGTGACAATT+CGG - chr7.1:1737641-1737660 MS.gene025987:intron 35.0%
AAGCGTCAATTTGAATCATC+TGG - chr7.1:1737212-1737231 MS.gene025987:CDS 35.0%
AAGTAAGTCTTTGACAGATG+TGG - chr7.1:1737821-1737840 MS.gene025987:CDS 35.0%
AATGGAATCGGTAAGTATCT+CGG - chr7.1:1737291-1737310 MS.gene025987:CDS 35.0%
AGAACTATGATGAGTATTCC+TGG + chr7.1:1737337-1737356 None:intergenic 35.0%
AGCTGATTGAATTTGATTCC+AGG - chr7.1:1737316-1737335 MS.gene025987:intron 35.0%
AGTCAATCCTTCATCTGTTA+AGG + chr7.1:1736911-1736930 None:intergenic 35.0%
ATTACTTCAAGGAACGTATG+GGG - chr7.1:1737019-1737038 MS.gene025987:CDS 35.0%
CAATTACTTCAAGGAACGTA+TGG - chr7.1:1737017-1737036 MS.gene025987:CDS 35.0%
CTATGATAACTACAACATGG+TGG - chr7.1:1737158-1737177 MS.gene025987:CDS 35.0%
GAAAAAAATCAGGTTCAGCT+TGG + chr7.1:1737080-1737099 None:intergenic 35.0%
GCTCTATGATAACTACAACA+TGG - chr7.1:1737155-1737174 MS.gene025987:CDS 35.0%
TCCTCCATTTCAAACCTATT+CGG + chr7.1:1737522-1737541 None:intergenic 35.0%
TTGTAGTTATCATAGAGCCA+CGG + chr7.1:1737153-1737172 None:intergenic 35.0%
!! AGGTACTGATGTTAGTAATG+GGG - chr7.1:1738124-1738143 MS.gene025987:CDS 35.0%
!! GTAGGTACTGATGTTAGTAA+TGG - chr7.1:1738122-1738141 MS.gene025987:CDS 35.0%
ATCCTTCATCTGTTAAGGTG+AGG + chr7.1:1736906-1736925 None:intergenic 40.0%
CCTCCATTTCAAACCTATTC+GGG + chr7.1:1737521-1737540 None:intergenic 40.0%
CTTAAACTGCATTGTCGCAT+AGG + chr7.1:1737436-1737455 None:intergenic 40.0%
GATATGGGAAAATTTGCCGT+AGG - chr7.1:1738104-1738123 MS.gene025987:CDS 40.0%
TGATAACTACAACATGGTGG+TGG - chr7.1:1737161-1737180 MS.gene025987:CDS 40.0%
TGATTCAAATTGACGCTTGC+TGG + chr7.1:1737210-1737229 None:intergenic 40.0%
TGTCACGTTGTAGTCTTTGT+GGG + chr7.1:1737638-1737657 None:intergenic 40.0%
TGTTATCTGTGTGGTCTGTT+GGG - chr7.1:1737477-1737496 MS.gene025987:CDS 40.0%
TTATACGCTTGCGCTTCTTA+AGG + chr7.1:1738019-1738038 None:intergenic 40.0%
TTGTCACGTTGTAGTCTTTG+TGG + chr7.1:1737639-1737658 None:intergenic 40.0%
! AAGAAGCGCAAGCGTATAAA+GGG - chr7.1:1738020-1738039 MS.gene025987:CDS 40.0%
! ATCTGCCATTCTTGTTTCAG+AGG + chr7.1:1737396-1737415 None:intergenic 40.0%
! ATGTAGTGTCAAGTGTTGCT+GGG - chr7.1:1738081-1738100 MS.gene025987:CDS 40.0%
! GAATAGGTTTGAAATGGAGG+AGG - chr7.1:1737521-1737540 MS.gene025987:CDS 40.0%
! GTACTGATGTTAGTAATGGG+GGG - chr7.1:1738126-1738145 MS.gene025987:CDS 40.0%
! TAAGAAGCGCAAGCGTATAA+AGG - chr7.1:1738019-1738038 MS.gene025987:CDS 40.0%
! TGAAGGATTGACTCTCAATC+TGG - chr7.1:1736918-1736937 MS.gene025987:CDS 40.0%
! TTTGAAATGGAGGAGGACAA+CGG - chr7.1:1737528-1737547 MS.gene025987:CDS 40.0%
!! CTGTACCTCTGAAACAAGAA+TGG - chr7.1:1737388-1737407 MS.gene025987:intron 40.0%
!! GACAATTCGGTGCAGTAAAT+GGG - chr7.1:1737654-1737673 MS.gene025987:intron 40.0%
!! GGTACTGATGTTAGTAATGG+GGG - chr7.1:1738125-1738144 MS.gene025987:CDS 40.0%
!! TGACAATTCGGTGCAGTAAA+TGG - chr7.1:1737653-1737672 MS.gene025987:intron 40.0%
AACGTATGGGGCATATTTGG+AGG - chr7.1:1737031-1737050 MS.gene025987:CDS 45.0%
AATGGCTGAAACCAGTGGTA+AGG - chr7.1:1737568-1737587 MS.gene025987:CDS 45.0%
ACTGCTGACCTTAACCTTCA+AGG - chr7.1:1736880-1736899 MS.gene025987:CDS 45.0%
AGGAACGTATGGGGCATATT+TGG - chr7.1:1737028-1737047 MS.gene025987:CDS 45.0%
CAAGCGGAACAAACCAAACT+CGG - chr7.1:1737850-1737869 MS.gene025987:CDS 45.0%
CAGGTGCATTAGCTACCATT+TGG - chr7.1:1737246-1737265 MS.gene025987:CDS 45.0%
CATTTCAAACCTATTCGGGC+AGG + chr7.1:1737517-1737536 None:intergenic 45.0%
CGTTGTAGTCTTTGTGGGAT+AGG + chr7.1:1737633-1737652 None:intergenic 45.0%
CTATGTCAGGTGTCTCTACA+GGG - chr7.1:1737934-1737953 MS.gene025987:intron 45.0%
CTGCCCGAATAGGTTTGAAA+TGG - chr7.1:1737515-1737534 MS.gene025987:CDS 45.0%
CTGTTATCTGTGTGGTCTGT+TGG - chr7.1:1737476-1737495 MS.gene025987:CDS 45.0%
TAACTCTTCTGCTACTGCTG+TGG - chr7.1:1737962-1737981 MS.gene025987:intron 45.0%
TATGTCAGGTGTCTCTACAG+GGG - chr7.1:1737935-1737954 MS.gene025987:intron 45.0%
TGGCAGATTCGAGTGAATGA+CGG - chr7.1:1737408-1737427 MS.gene025987:intron 45.0%
! AAACCAGTGGTAAGGCGTTT+AGG - chr7.1:1737576-1737595 MS.gene025987:CDS 45.0%
! AGTGGTAAGGCGTTTAGGTA+CGG - chr7.1:1737581-1737600 MS.gene025987:CDS 45.0%
! CCCGAATAGGTTTGAAATGG+AGG - chr7.1:1737518-1737537 MS.gene025987:CDS 45.0%
! CGAGGTTGATTCAGACCAAA+TGG + chr7.1:1737264-1737283 None:intergenic 45.0%
! GATGTAGTGTCAAGTGTTGC+TGG - chr7.1:1738080-1738099 MS.gene025987:CDS 45.0%
! TCAAGTGTTGCTGGGGATAT+GGG - chr7.1:1738089-1738108 MS.gene025987:CDS 45.0%
! TGTAGTGTCAAGTGTTGCTG+GGG - chr7.1:1738082-1738101 MS.gene025987:CDS 45.0%
AATCAACCTCGTGTGGGCAA+TGG - chr7.1:1737273-1737292 MS.gene025987:CDS 50.0%
ACAACGGTATACGTGGATGG+GGG - chr7.1:1737544-1737563 MS.gene025987:CDS 50.0%
ACAGATGTGGCTTCACCAAG+CGG - chr7.1:1737834-1737853 MS.gene025987:CDS 50.0%
AGGACAACGGTATACGTGGA+TGG - chr7.1:1737541-1737560 MS.gene025987:CDS 50.0%
AGGTGAGGCCTTGAAGGTTA+AGG + chr7.1:1736891-1736910 None:intergenic 50.0%
ATCAGGTTCAGCTTGGGTGA+TGG + chr7.1:1737073-1737092 None:intergenic 50.0%
ATGTCAGGTGTCTCTACAGG+GGG - chr7.1:1737936-1737955 MS.gene025987:intron 50.0%
CGACAATGAGGATGTCACTG+TGG - chr7.1:1737986-1738005 MS.gene025987:CDS 50.0%
CTGCTGGAAACTTAGCTGCT+GGG - chr7.1:1737691-1737710 MS.gene025987:intron 50.0%
CTGTTAAGGTGAGGCCTTGA+AGG + chr7.1:1736897-1736916 None:intergenic 50.0%
GACAACGGTATACGTGGATG+GGG - chr7.1:1737543-1737562 MS.gene025987:CDS 50.0%
GCTATGTCAGGTGTCTCTAC+AGG - chr7.1:1737933-1737952 MS.gene025987:intron 50.0%
GGACAACGGTATACGTGGAT+GGG - chr7.1:1737542-1737561 MS.gene025987:CDS 50.0%
GGCCTCACCTTAACAGATGA+AGG - chr7.1:1736901-1736920 MS.gene025987:CDS 50.0%
GGTCTGAATCAACCTCGTGT+GGG - chr7.1:1737267-1737286 MS.gene025987:CDS 50.0%
GTACCTAAACGCCTTACCAC+TGG + chr7.1:1737582-1737601 None:intergenic 50.0%
GTACGGCTGCTACAAACATC+TGG - chr7.1:1737598-1737617 MS.gene025987:CDS 50.0%
GTAGAGACACCTGACATAGC+TGG + chr7.1:1737933-1737952 None:intergenic 50.0%
GTGATGGTAACACGTTTCCC+TGG + chr7.1:1737057-1737076 None:intergenic 50.0%
TACTGCTGTGGACGACAATG+AGG - chr7.1:1737974-1737993 MS.gene025987:CDS 50.0%
TCACCTGCTTGACGTTGCAA+AGG - chr7.1:1737113-1737132 MS.gene025987:CDS 50.0%
TCATCTGGACATATGGGTGC+AGG - chr7.1:1737227-1737246 MS.gene025987:CDS 50.0%
TGAGTCTCCATAGTGAGTCG+CGG + chr7.1:1737882-1737901 None:intergenic 50.0%
TGCTACAAACATCTGGCTGC+AGG - chr7.1:1737605-1737624 MS.gene025987:intron 50.0%
TGCTGGGCCATCAGAAAAGA+GGG - chr7.1:1737707-1737726 MS.gene025987:intron 50.0%
TGGTCTGAATCAACCTCGTG+TGG - chr7.1:1737266-1737285 MS.gene025987:CDS 50.0%
TTGCAACGTCAAGCAGGTGA+TGG + chr7.1:1737113-1737132 None:intergenic 50.0%
! AGCGCAAGAACGAGTGGATT+AGG + chr7.1:1737909-1737928 None:intergenic 50.0%
! GGGGTGTTCTGTTATCTGTG+TGG - chr7.1:1737468-1737487 MS.gene025987:CDS 50.0%
! GGTCAACATGTTTCTGCTGC+TGG - chr7.1:1737675-1737694 MS.gene025987:intron 50.0%
! GTCAAGTGTTGCTGGGGATA+TGG - chr7.1:1738088-1738107 MS.gene025987:CDS 50.0%
!! CGAGTTTGGTTTGTTCCGCT+TGG + chr7.1:1737852-1737871 None:intergenic 50.0%
ATGGGGCATATTTGGAGGCC+AGG - chr7.1:1737036-1737055 MS.gene025987:CDS 55.0%
CAACGGTATACGTGGATGGG+GGG - chr7.1:1737545-1737564 MS.gene025987:CDS 55.0%
CCTCGTGTGGGCAATGGAAT+CGG - chr7.1:1737279-1737298 MS.gene025987:CDS 55.0%
CTGACAAGACCTGCCCGAAT+AGG - chr7.1:1737505-1737524 MS.gene025987:CDS 55.0%
CTGCTGGGCCATCAGAAAAG+AGG - chr7.1:1737706-1737725 MS.gene025987:intron 55.0%
CTTGCGCTACCAGCTATGTC+AGG - chr7.1:1737921-1737940 MS.gene025987:intron 55.0%
GAGGAGGACAACGGTATACG+TGG - chr7.1:1737537-1737556 MS.gene025987:CDS 55.0%
GCTGCTGGAAACTTAGCTGC+TGG - chr7.1:1737690-1737709 MS.gene025987:intron 55.0%
GCTTGACGTTGCAAAGGTCC+TGG - chr7.1:1737119-1737138 MS.gene025987:CDS 55.0%
GGACCTTTGCAACGTCAAGC+AGG + chr7.1:1737119-1737138 None:intergenic 55.0%
GTATACGTGGATGGGGGGAA+TGG - chr7.1:1737550-1737569 MS.gene025987:CDS 55.0%
GTTGCAAAGGTCCTGGAGGA+GGG - chr7.1:1737126-1737145 MS.gene025987:CDS 55.0%
TGACGTTGCAAAGGTCCTGG+AGG - chr7.1:1737122-1737141 MS.gene025987:CDS 55.0%
TGGGGCATATTTGGAGGCCA+GGG - chr7.1:1737037-1737056 MS.gene025987:CDS 55.0%
TTGCAAAGGTCCTGGAGGAG+GGG - chr7.1:1737127-1737146 MS.gene025987:CDS 55.0%
! ACGCTTGCTGGAACAACTCC+AGG + chr7.1:1737198-1737217 None:intergenic 55.0%
! GTGGTGGAACGTATTGCTCC+TGG - chr7.1:1737177-1737196 MS.gene025987:CDS 55.0%
CCGATTCCATTGCCCACACG+AGG + chr7.1:1737282-1737301 None:intergenic 60.0%
CGTTGCAAAGGTCCTGGAGG+AGG - chr7.1:1737125-1737144 MS.gene025987:CDS 60.0%
GGGGGAATGGCTGAAACCAG+TGG - chr7.1:1737563-1737582 MS.gene025987:CDS 60.0%
GTCTCTGCCGCGACTCACTA+TGG - chr7.1:1737872-1737891 MS.gene025987:CDS 60.0%
! GCCAGCGCCCTCTTTTCTGA+TGG + chr7.1:1737717-1737736 None:intergenic 60.0%
! GCCATCAGAAAAGAGGGCGC+TGG - chr7.1:1737713-1737732 MS.gene025987:intron 60.0%
! GCTGGTAGCGCAAGAACGAG+TGG + chr7.1:1737915-1737934 None:intergenic 60.0%
!! TCAGAAAAGAGGGCGCTGGC+AGG - chr7.1:1737717-1737736 MS.gene025987:intron 60.0%
GTCGCGGCAGAGACCGAGTT+TGG + chr7.1:1737866-1737885 None:intergenic 65.0%
AGAGCCACGGCCCCTCCTCC+AGG + chr7.1:1737140-1737159 None:intergenic 75.0%
AGGTCCTGGAGGAGGGGCCG+TGG - chr7.1:1737133-1737152 MS.gene025987:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 1736874 1738160 1736874 ID=MS.gene025987
chr7.1 mRNA 1736874 1738160 1736874 ID=MS.gene025987.t1;Parent=MS.gene025987
chr7.1 exon 1737969 1738160 1737969 ID=MS.gene025987.t1.exon1;Parent=MS.gene025987.t1
chr7.1 CDS 1737969 1738160 1737969 ID=cds.MS.gene025987.t1;Parent=MS.gene025987.t1
chr7.1 exon 1737786 1737899 1737786 ID=MS.gene025987.t1.exon2;Parent=MS.gene025987.t1
chr7.1 CDS 1737786 1737899 1737786 ID=cds.MS.gene025987.t1;Parent=MS.gene025987.t1
chr7.1 exon 1737437 1737620 1737437 ID=MS.gene025987.t1.exon3;Parent=MS.gene025987.t1
chr7.1 CDS 1737437 1737620 1737437 ID=cds.MS.gene025987.t1;Parent=MS.gene025987.t1
chr7.1 exon 1736874 1737328 1736874 ID=MS.gene025987.t1.exon4;Parent=MS.gene025987.t1
chr7.1 CDS 1736874 1737328 1736874 ID=cds.MS.gene025987.t1;Parent=MS.gene025987.t1
Gene Sequence

>MS.gene025987

ATGTCTACTGCTGACCTTAACCTTCAAGGCCTCACCTTAACAGATGAAGGATTGACTCTCAATCTGGATTCTACCACTGATGCTACTCAAATTCTTGATCACTGCTTAATAGGTCGTGTGCTCACTGACAAATTGATTCGTTTCAATTACTTCAAGGAACGTATGGGGCATATTTGGAGGCCAGGGAAACGTGTTACCATCACCCAAGCTGAACCTGATTTTTTTCTGTACTAATTCCATCACCTGCTTGACGTTGCAAAGGTCCTGGAGGAGGGGCCGTGGCTCTATGATAACTACAACATGGTGGTGGAACGTATTGCTCCTGGAGTTGTTCCAGCAAGCGTCAATTTGAATCATCTGGACATATGGGTGCAGGTGCATTAGCTACCATTTGGTCTGAATCAACCTCGTGTGGGCAATGGAATCGGTAAGTATCTCGGAGAGCTGATTGAATTTGATTCCAGGAATACTCATCATAGTTCTTATATGCGGCTTAAAGTTCGAATTGATGTTACTGTACCTCTGAAACAAGAATGGCAGATTCGAGTGAATGACGGTTCCTATGCGACAATGCAGTTTAAGTATGAAAAGCTTGGGGTGTTCTGTTATCTGTGTGGTCTGTTGGGACATACTGACAAGACCTGCCCGAATAGGTTTGAAATGGAGGAGGACAACGGTATACGTGGATGGGGGGAATGGCTGAAACCAGTGGTAAGGCGTTTAGGTACGGCTGCTACAAACATCTGGCTGCAGGATCCTATCCCACAAAGACTACAACGTGACAATTCGGTGCAGTAAATGGGTCAACATGTTTCTGCTGCTGGAAACTTAGCTGCTGGGCCATCAGAAAAGAGGGCGCTGGCAGGTCGAATTACTGCTGTTCATAAAGAAATTGATTCTATAAAGTCTCATATTTTGGCTGCCCAACTTAATTCTCTATCAAAATTAAGTAAGTCTTTGACAGATGTGGCTTCACCAAGCGGAACAAACCAAACTCGGTCTCTGCCGCGACTCACTATGGAGACTCAACAGCCTAATCCACTCGTTCTTGCGCTACCAGCTATGTCAGGTGTCTCTACAGGGGGAGATAACTCTTCTGCTACTGCTGTGGACGACAATGAGGATGTCACTGTGGTTTCTGACCTTAAGAAGCGCAAGCGTATAAAGGGAGCTGAAGAGAAAAACGTCAAAGAAAGTCTTGTGTTTGATGTAGTGTCAAGTGTTGCTGGGGATATGGGAAAATTTGCCGTAGGTACTGATGTTAGTAATGGGGGGATGTTGTCATGA

Protein sequence

>MS.gene025987.t1

MSTADLNLQGLTLTDEGLTLNLDSTTDATQILDHCLIGRVLTDKLIRFNYFKERMGHIWRPGKRVLEEGPWLYDNYNMVVERIAPGVVPASVNLNHLDIWVQIRVNDGSYATMQFKYEKLGVFCYLCGLLGHTDKTCPNRFEMEEDNGIRGWGEWLKPVVRRLAAGPSEKRALAGRITAVHKEIDSIKSHILAAQLNSLSKLSKSLTDVASPSGTNQTRSLPRLTMETQQPNPLVLALPAMSGVSTGGDNSSATAVDDNEDVTVVSDLKKRKRIKGAEEKNVKESLVFDVVSSVAGDMGKFAVGTDVSNGGMLS