Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025987.t1 | PNX72859.1 | 31.8 | 377 | 144 | 9 | 5 | 281 | 124 | 487 | 1.00E-39 | 174.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025987.t1 | A0A392MN10 | 37.3 | 236 | 70 | 2 | 5 | 162 | 25 | 260 | 5.1e-41 | 177.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene025987.t1 | MTR_3g053920 | 38.144 | 194 | 85 | 3 | 1 | 170 | 1 | 183 | 7.92e-42 | 146 |
MS.gene025987.t1 | MTR_2g061500 | 49.606 | 127 | 41 | 1 | 1 | 104 | 1 | 127 | 4.62e-37 | 129 |
MS.gene025987.t1 | MTR_4g103530 | 41.667 | 72 | 33 | 2 | 34 | 104 | 10 | 73 | 8.92e-13 | 66.2 |
MS.gene025987.t1 | MTR_7g011710 | 62.500 | 40 | 15 | 0 | 65 | 104 | 34 | 73 | 1.17e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 100 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTATAAAGTCTCATATTT+TGG | 0.146849 | 7.1:-1737242 | MS.gene025987:CDS |
AGGAACGTATGGGGCATATT+TGG | 0.238652 | 7.1:-1737984 | MS.gene025987:CDS |
TCCTCCATTTCAAACCTATT+CGG | 0.284862 | 7.1:+1737493 | None:intergenic |
TGATTCAAATTGACGCTTGC+TGG | 0.292360 | 7.1:+1737805 | None:intergenic |
GTCAAGTGTTGCTGGGGATA+TGG | 0.297582 | 7.1:-1736924 | MS.gene025987:CDS |
TAAGAAGCGCAAGCGTATAA+AGG | 0.310256 | 7.1:-1736993 | MS.gene025987:CDS |
ATTCTTGATCACTGCTTAAT+AGG | 0.316199 | 7.1:-1738048 | MS.gene025987:CDS |
CTGTTATCTGTGTGGTCTGT+TGG | 0.320720 | 7.1:-1737536 | MS.gene025987:CDS |
CCTCCATTTCAAACCTATTC+GGG | 0.344988 | 7.1:+1737494 | None:intergenic |
AAACCAGTGGTAAGGCGTTT+AGG | 0.369074 | 7.1:-1737436 | MS.gene025987:intron |
ATTTGAATCATCTGGACATA+TGG | 0.369587 | 7.1:-1737792 | MS.gene025987:CDS |
CTGTTAAGGTGAGGCCTTGA+AGG | 0.386785 | 7.1:+1738118 | None:intergenic |
GATGTAGTGTCAAGTGTTGC+TGG | 0.386829 | 7.1:-1736932 | MS.gene025987:CDS |
TGTTATCTGTGTGGTCTGTT+GGG | 0.391407 | 7.1:-1737535 | MS.gene025987:CDS |
GCTATGTCAGGTGTCTCTAC+AGG | 0.401628 | 7.1:-1737079 | MS.gene025987:CDS |
TAGGTACTGATGTTAGTAAT+GGG | 0.404095 | 7.1:-1736889 | MS.gene025987:CDS |
AGGTCCTGGAGGAGGGGCCG+TGG | 0.406456 | 7.1:-1737879 | MS.gene025987:CDS |
GATTCGTTTCAATTACTTCA+AGG | 0.410002 | 7.1:-1738004 | MS.gene025987:CDS |
GTCTCTGCCGCGACTCACTA+TGG | 0.418221 | 7.1:-1737140 | MS.gene025987:CDS |
TTATACGCTTGCGCTTCTTA+AGG | 0.420511 | 7.1:+1736996 | None:intergenic |
AGTTTAAGTATGAAAAGCTT+GGG | 0.420862 | 7.1:-1737564 | MS.gene025987:CDS |
AGTCAATCCTTCATCTGTTA+AGG | 0.421004 | 7.1:+1738104 | None:intergenic |
CTGACAAGACCTGCCCGAAT+AGG | 0.423285 | 7.1:-1737507 | MS.gene025987:CDS |
GTCGCGGCAGAGACCGAGTT+TGG | 0.429274 | 7.1:+1737149 | None:intergenic |
AGCGCAAGAACGAGTGGATT+AGG | 0.435665 | 7.1:+1737106 | None:intergenic |
AGAGCCACGGCCCCTCCTCC+AGG | 0.445767 | 7.1:+1737875 | None:intergenic |
AGGTGAGGCCTTGAAGGTTA+AGG | 0.446133 | 7.1:+1738124 | None:intergenic |
TGAAGGATTGACTCTCAATC+TGG | 0.446501 | 7.1:-1738094 | MS.gene025987:CDS |
CAATTACTTCAAGGAACGTA+TGG | 0.447480 | 7.1:-1737995 | MS.gene025987:CDS |
AAGCGTCAATTTGAATCATC+TGG | 0.454920 | 7.1:-1737800 | MS.gene025987:CDS |
CGAGTTTGGTTTGTTCCGCT+TGG | 0.456653 | 7.1:+1737163 | None:intergenic |
ACTGCTGACCTTAACCTTCA+AGG | 0.458508 | 7.1:-1738132 | MS.gene025987:CDS |
AAGAAGCGCAAGCGTATAAA+GGG | 0.462842 | 7.1:-1736992 | MS.gene025987:CDS |
TCAAGTGTTGCTGGGGATAT+GGG | 0.469433 | 7.1:-1736923 | MS.gene025987:CDS |
CTGCCCGAATAGGTTTGAAA+TGG | 0.473016 | 7.1:-1737497 | MS.gene025987:CDS |
CTGCTGGAAACTTAGCTGCT+GGG | 0.473596 | 7.1:-1737321 | MS.gene025987:intron |
CGTTGCAAAGGTCCTGGAGG+AGG | 0.474381 | 7.1:-1737887 | MS.gene025987:intron |
ATGGGGCATATTTGGAGGCC+AGG | 0.482147 | 7.1:-1737976 | MS.gene025987:CDS |
TTTGAATCATCTGGACATAT+GGG | 0.486363 | 7.1:-1737791 | MS.gene025987:CDS |
ATGTAGTGTCAAGTGTTGCT+GGG | 0.501530 | 7.1:-1736931 | MS.gene025987:CDS |
ACGCTTGCTGGAACAACTCC+AGG | 0.505536 | 7.1:+1737817 | None:intergenic |
CAGTTTAAGTATGAAAAGCT+TGG | 0.505746 | 7.1:-1737565 | MS.gene025987:CDS |
CTTGCGCTACCAGCTATGTC+AGG | 0.506354 | 7.1:-1737091 | MS.gene025987:CDS |
GGCCTCACCTTAACAGATGA+AGG | 0.509460 | 7.1:-1738111 | MS.gene025987:CDS |
TCAGAAAAGAGGGCGCTGGC+AGG | 0.511263 | 7.1:-1737295 | MS.gene025987:CDS |
GACAACGGTATACGTGGATG+GGG | 0.513083 | 7.1:-1737469 | MS.gene025987:CDS |
CTATGTCAGGTGTCTCTACA+GGG | 0.517024 | 7.1:-1737078 | MS.gene025987:CDS |
CATTTCAAACCTATTCGGGC+AGG | 0.517796 | 7.1:+1737498 | None:intergenic |
AGGACAACGGTATACGTGGA+TGG | 0.520019 | 7.1:-1737471 | MS.gene025987:CDS |
AAGTAAGTCTTTGACAGATG+TGG | 0.526134 | 7.1:-1737191 | MS.gene025987:CDS |
GTTGCAAAGGTCCTGGAGGA+GGG | 0.526427 | 7.1:-1737886 | MS.gene025987:intron |
CTTAAACTGCATTGTCGCAT+AGG | 0.529353 | 7.1:+1737579 | None:intergenic |
GCCATCAGAAAAGAGGGCGC+TGG | 0.538453 | 7.1:-1737299 | MS.gene025987:CDS |
GTGGTGGAACGTATTGCTCC+TGG | 0.539348 | 7.1:-1737835 | MS.gene025987:CDS |
AATTACTTCAAGGAACGTAT+GGG | 0.540598 | 7.1:-1737994 | MS.gene025987:CDS |
GTGATGGTAACACGTTTCCC+TGG | 0.544874 | 7.1:+1737958 | None:intergenic |
GTAGGTACTGATGTTAGTAA+TGG | 0.549070 | 7.1:-1736890 | MS.gene025987:CDS |
GTACCTAAACGCCTTACCAC+TGG | 0.552187 | 7.1:+1737433 | None:intergenic |
CTGCTGGGCCATCAGAAAAG+AGG | 0.553024 | 7.1:-1737306 | MS.gene025987:CDS |
AACGTATGGGGCATATTTGG+AGG | 0.553470 | 7.1:-1737981 | MS.gene025987:CDS |
CCCGAATAGGTTTGAAATGG+AGG | 0.558785 | 7.1:-1737494 | MS.gene025987:CDS |
GTAGAGACACCTGACATAGC+TGG | 0.559119 | 7.1:+1737082 | None:intergenic |
GGACAACGGTATACGTGGAT+GGG | 0.560320 | 7.1:-1737470 | MS.gene025987:CDS |
AATGGCTGAAACCAGTGGTA+AGG | 0.570704 | 7.1:-1737444 | MS.gene025987:CDS |
CAAGCGGAACAAACCAAACT+CGG | 0.573520 | 7.1:-1737162 | MS.gene025987:CDS |
TGCTGGGCCATCAGAAAAGA+GGG | 0.583468 | 7.1:-1737305 | MS.gene025987:CDS |
TCATCTGGACATATGGGTGC+AGG | 0.592215 | 7.1:-1737785 | MS.gene025987:intron |
GGTACTGATGTTAGTAATGG+GGG | 0.594236 | 7.1:-1736887 | MS.gene025987:CDS |
TGATAACTACAACATGGTGG+TGG | 0.594242 | 7.1:-1737851 | MS.gene025987:CDS |
ACAACGGTATACGTGGATGG+GGG | 0.595348 | 7.1:-1737468 | MS.gene025987:CDS |
CAACGGTATACGTGGATGGG+GGG | 0.601853 | 7.1:-1737467 | MS.gene025987:CDS |
TAACTCTTCTGCTACTGCTG+TGG | 0.602863 | 7.1:-1737050 | MS.gene025987:CDS |
TGGGGCATATTTGGAGGCCA+GGG | 0.608005 | 7.1:-1737975 | MS.gene025987:CDS |
TTGCAAAGGTCCTGGAGGAG+GGG | 0.610498 | 7.1:-1737885 | MS.gene025987:intron |
GTTAAGGTCAGCAGTAGACA+TGG | 0.613037 | 7.1:+1738140 | None:intergenic |
GAATAGGTTTGAAATGGAGG+AGG | 0.616184 | 7.1:-1737491 | MS.gene025987:CDS |
ATTACTAACATCAGTACCTA+CGG | 0.617804 | 7.1:+1736892 | None:intergenic |
GCTGGTAGCGCAAGAACGAG+TGG | 0.620176 | 7.1:+1737100 | None:intergenic |
ATCCTTCATCTGTTAAGGTG+AGG | 0.620666 | 7.1:+1738109 | None:intergenic |
AAGAATTTGAGTAGCATCAG+TGG | 0.622026 | 7.1:+1738065 | None:intergenic |
AGGTACTGATGTTAGTAATG+GGG | 0.634143 | 7.1:-1736888 | MS.gene025987:CDS |
GGGGTGTTCTGTTATCTGTG+TGG | 0.635538 | 7.1:-1737544 | MS.gene025987:CDS |
TGGCAGATTCGAGTGAATGA+CGG | 0.637045 | 7.1:-1737604 | MS.gene025987:intron |
ATTACTTCAAGGAACGTATG+GGG | 0.639604 | 7.1:-1737993 | MS.gene025987:CDS |
GAGGAGGACAACGGTATACG+TGG | 0.643853 | 7.1:-1737475 | MS.gene025987:CDS |
ACAGATGTGGCTTCACCAAG+CGG | 0.646811 | 7.1:-1737178 | MS.gene025987:CDS |
GTACTGATGTTAGTAATGGG+GGG | 0.648224 | 7.1:-1736886 | MS.gene025987:CDS |
GATATGGGAAAATTTGCCGT+AGG | 0.653383 | 7.1:-1736908 | MS.gene025987:CDS |
ATGTCAGGTGTCTCTACAGG+GGG | 0.654305 | 7.1:-1737076 | MS.gene025987:CDS |
TACTGCTGTGGACGACAATG+AGG | 0.655338 | 7.1:-1737038 | MS.gene025987:CDS |
TGAGTCTCCATAGTGAGTCG+CGG | 0.674256 | 7.1:+1737133 | None:intergenic |
TTGTAGTTATCATAGAGCCA+CGG | 0.675083 | 7.1:+1737862 | None:intergenic |
GTTTAAGTATGAAAAGCTTG+GGG | 0.676485 | 7.1:-1737563 | MS.gene025987:CDS |
TTTGAAATGGAGGAGGACAA+CGG | 0.692804 | 7.1:-1737484 | MS.gene025987:CDS |
TATGTCAGGTGTCTCTACAG+GGG | 0.700838 | 7.1:-1737077 | MS.gene025987:CDS |
TGTAGTGTCAAGTGTTGCTG+GGG | 0.700918 | 7.1:-1736930 | MS.gene025987:CDS |
TGACGTTGCAAAGGTCCTGG+AGG | 0.711182 | 7.1:-1737890 | MS.gene025987:intron |
GCTCTATGATAACTACAACA+TGG | 0.711588 | 7.1:-1737857 | MS.gene025987:CDS |
CTATGATAACTACAACATGG+TGG | 0.722488 | 7.1:-1737854 | MS.gene025987:CDS |
CGACAATGAGGATGTCACTG+TGG | 0.777920 | 7.1:-1737026 | MS.gene025987:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGTACAGAAAAAAATC+AGG | + | chr7.1:1737090-1737109 | None:intergenic | 20.0% |
!!! | ATTTTGATAGAGAATTAAGT+TGG | + | chr7.1:1737800-1737819 | None:intergenic | 20.0% |
!!! | TTCTATAAAGTCTCATATTT+TGG | - | chr7.1:1737770-1737789 | MS.gene025987:intron | 20.0% |
!!! | TTTTGATAGAGAATTAAGTT+GGG | + | chr7.1:1737799-1737818 | None:intergenic | 20.0% |
! | AGTTTAAGTATGAAAAGCTT+GGG | - | chr7.1:1737448-1737467 | MS.gene025987:CDS | 25.0% |
AAAAAAATCAGGTTCAGCTT+GGG | + | chr7.1:1737079-1737098 | None:intergenic | 30.0% | |
AATTACTTCAAGGAACGTAT+GGG | - | chr7.1:1737018-1737037 | MS.gene025987:CDS | 30.0% | |
ATTACTAACATCAGTACCTA+CGG | + | chr7.1:1738123-1738142 | None:intergenic | 30.0% | |
ATTCTTGATCACTGCTTAAT+AGG | - | chr7.1:1736964-1736983 | MS.gene025987:CDS | 30.0% | |
ATTTGAATCATCTGGACATA+TGG | - | chr7.1:1737220-1737239 | MS.gene025987:CDS | 30.0% | |
CAGTTTAAGTATGAAAAGCT+TGG | - | chr7.1:1737447-1737466 | MS.gene025987:CDS | 30.0% | |
CTCATCATAGTTCTTATATG+CGG | - | chr7.1:1737343-1737362 | MS.gene025987:intron | 30.0% | |
GATTCGTTTCAATTACTTCA+AGG | - | chr7.1:1737008-1737027 | MS.gene025987:CDS | 30.0% | |
GTTTAAGTATGAAAAGCTTG+GGG | - | chr7.1:1737449-1737468 | MS.gene025987:CDS | 30.0% | |
TTTGAATCATCTGGACATAT+GGG | - | chr7.1:1737221-1737240 | MS.gene025987:CDS | 30.0% | |
!! | TAGGTACTGATGTTAGTAAT+GGG | - | chr7.1:1738123-1738142 | MS.gene025987:CDS | 30.0% |
AAGAATTTGAGTAGCATCAG+TGG | + | chr7.1:1736950-1736969 | None:intergenic | 35.0% | |
AAGACTACAACGTGACAATT+CGG | - | chr7.1:1737641-1737660 | MS.gene025987:intron | 35.0% | |
AAGCGTCAATTTGAATCATC+TGG | - | chr7.1:1737212-1737231 | MS.gene025987:CDS | 35.0% | |
AAGTAAGTCTTTGACAGATG+TGG | - | chr7.1:1737821-1737840 | MS.gene025987:CDS | 35.0% | |
AATGGAATCGGTAAGTATCT+CGG | - | chr7.1:1737291-1737310 | MS.gene025987:CDS | 35.0% | |
AGAACTATGATGAGTATTCC+TGG | + | chr7.1:1737337-1737356 | None:intergenic | 35.0% | |
AGCTGATTGAATTTGATTCC+AGG | - | chr7.1:1737316-1737335 | MS.gene025987:intron | 35.0% | |
AGTCAATCCTTCATCTGTTA+AGG | + | chr7.1:1736911-1736930 | None:intergenic | 35.0% | |
ATTACTTCAAGGAACGTATG+GGG | - | chr7.1:1737019-1737038 | MS.gene025987:CDS | 35.0% | |
CAATTACTTCAAGGAACGTA+TGG | - | chr7.1:1737017-1737036 | MS.gene025987:CDS | 35.0% | |
CTATGATAACTACAACATGG+TGG | - | chr7.1:1737158-1737177 | MS.gene025987:CDS | 35.0% | |
GAAAAAAATCAGGTTCAGCT+TGG | + | chr7.1:1737080-1737099 | None:intergenic | 35.0% | |
GCTCTATGATAACTACAACA+TGG | - | chr7.1:1737155-1737174 | MS.gene025987:CDS | 35.0% | |
TCCTCCATTTCAAACCTATT+CGG | + | chr7.1:1737522-1737541 | None:intergenic | 35.0% | |
TTGTAGTTATCATAGAGCCA+CGG | + | chr7.1:1737153-1737172 | None:intergenic | 35.0% | |
!! | AGGTACTGATGTTAGTAATG+GGG | - | chr7.1:1738124-1738143 | MS.gene025987:CDS | 35.0% |
!! | GTAGGTACTGATGTTAGTAA+TGG | - | chr7.1:1738122-1738141 | MS.gene025987:CDS | 35.0% |
ATCCTTCATCTGTTAAGGTG+AGG | + | chr7.1:1736906-1736925 | None:intergenic | 40.0% | |
CCTCCATTTCAAACCTATTC+GGG | + | chr7.1:1737521-1737540 | None:intergenic | 40.0% | |
CTTAAACTGCATTGTCGCAT+AGG | + | chr7.1:1737436-1737455 | None:intergenic | 40.0% | |
GATATGGGAAAATTTGCCGT+AGG | - | chr7.1:1738104-1738123 | MS.gene025987:CDS | 40.0% | |
TGATAACTACAACATGGTGG+TGG | - | chr7.1:1737161-1737180 | MS.gene025987:CDS | 40.0% | |
TGATTCAAATTGACGCTTGC+TGG | + | chr7.1:1737210-1737229 | None:intergenic | 40.0% | |
TGTCACGTTGTAGTCTTTGT+GGG | + | chr7.1:1737638-1737657 | None:intergenic | 40.0% | |
TGTTATCTGTGTGGTCTGTT+GGG | - | chr7.1:1737477-1737496 | MS.gene025987:CDS | 40.0% | |
TTATACGCTTGCGCTTCTTA+AGG | + | chr7.1:1738019-1738038 | None:intergenic | 40.0% | |
TTGTCACGTTGTAGTCTTTG+TGG | + | chr7.1:1737639-1737658 | None:intergenic | 40.0% | |
! | AAGAAGCGCAAGCGTATAAA+GGG | - | chr7.1:1738020-1738039 | MS.gene025987:CDS | 40.0% |
! | ATCTGCCATTCTTGTTTCAG+AGG | + | chr7.1:1737396-1737415 | None:intergenic | 40.0% |
! | ATGTAGTGTCAAGTGTTGCT+GGG | - | chr7.1:1738081-1738100 | MS.gene025987:CDS | 40.0% |
! | GAATAGGTTTGAAATGGAGG+AGG | - | chr7.1:1737521-1737540 | MS.gene025987:CDS | 40.0% |
! | GTACTGATGTTAGTAATGGG+GGG | - | chr7.1:1738126-1738145 | MS.gene025987:CDS | 40.0% |
! | TAAGAAGCGCAAGCGTATAA+AGG | - | chr7.1:1738019-1738038 | MS.gene025987:CDS | 40.0% |
! | TGAAGGATTGACTCTCAATC+TGG | - | chr7.1:1736918-1736937 | MS.gene025987:CDS | 40.0% |
! | TTTGAAATGGAGGAGGACAA+CGG | - | chr7.1:1737528-1737547 | MS.gene025987:CDS | 40.0% |
!! | CTGTACCTCTGAAACAAGAA+TGG | - | chr7.1:1737388-1737407 | MS.gene025987:intron | 40.0% |
!! | GACAATTCGGTGCAGTAAAT+GGG | - | chr7.1:1737654-1737673 | MS.gene025987:intron | 40.0% |
!! | GGTACTGATGTTAGTAATGG+GGG | - | chr7.1:1738125-1738144 | MS.gene025987:CDS | 40.0% |
!! | TGACAATTCGGTGCAGTAAA+TGG | - | chr7.1:1737653-1737672 | MS.gene025987:intron | 40.0% |
AACGTATGGGGCATATTTGG+AGG | - | chr7.1:1737031-1737050 | MS.gene025987:CDS | 45.0% | |
AATGGCTGAAACCAGTGGTA+AGG | - | chr7.1:1737568-1737587 | MS.gene025987:CDS | 45.0% | |
ACTGCTGACCTTAACCTTCA+AGG | - | chr7.1:1736880-1736899 | MS.gene025987:CDS | 45.0% | |
AGGAACGTATGGGGCATATT+TGG | - | chr7.1:1737028-1737047 | MS.gene025987:CDS | 45.0% | |
CAAGCGGAACAAACCAAACT+CGG | - | chr7.1:1737850-1737869 | MS.gene025987:CDS | 45.0% | |
CAGGTGCATTAGCTACCATT+TGG | - | chr7.1:1737246-1737265 | MS.gene025987:CDS | 45.0% | |
CATTTCAAACCTATTCGGGC+AGG | + | chr7.1:1737517-1737536 | None:intergenic | 45.0% | |
CGTTGTAGTCTTTGTGGGAT+AGG | + | chr7.1:1737633-1737652 | None:intergenic | 45.0% | |
CTATGTCAGGTGTCTCTACA+GGG | - | chr7.1:1737934-1737953 | MS.gene025987:intron | 45.0% | |
CTGCCCGAATAGGTTTGAAA+TGG | - | chr7.1:1737515-1737534 | MS.gene025987:CDS | 45.0% | |
CTGTTATCTGTGTGGTCTGT+TGG | - | chr7.1:1737476-1737495 | MS.gene025987:CDS | 45.0% | |
TAACTCTTCTGCTACTGCTG+TGG | - | chr7.1:1737962-1737981 | MS.gene025987:intron | 45.0% | |
TATGTCAGGTGTCTCTACAG+GGG | - | chr7.1:1737935-1737954 | MS.gene025987:intron | 45.0% | |
TGGCAGATTCGAGTGAATGA+CGG | - | chr7.1:1737408-1737427 | MS.gene025987:intron | 45.0% | |
! | AAACCAGTGGTAAGGCGTTT+AGG | - | chr7.1:1737576-1737595 | MS.gene025987:CDS | 45.0% |
! | AGTGGTAAGGCGTTTAGGTA+CGG | - | chr7.1:1737581-1737600 | MS.gene025987:CDS | 45.0% |
! | CCCGAATAGGTTTGAAATGG+AGG | - | chr7.1:1737518-1737537 | MS.gene025987:CDS | 45.0% |
! | CGAGGTTGATTCAGACCAAA+TGG | + | chr7.1:1737264-1737283 | None:intergenic | 45.0% |
! | GATGTAGTGTCAAGTGTTGC+TGG | - | chr7.1:1738080-1738099 | MS.gene025987:CDS | 45.0% |
! | TCAAGTGTTGCTGGGGATAT+GGG | - | chr7.1:1738089-1738108 | MS.gene025987:CDS | 45.0% |
! | TGTAGTGTCAAGTGTTGCTG+GGG | - | chr7.1:1738082-1738101 | MS.gene025987:CDS | 45.0% |
AATCAACCTCGTGTGGGCAA+TGG | - | chr7.1:1737273-1737292 | MS.gene025987:CDS | 50.0% | |
ACAACGGTATACGTGGATGG+GGG | - | chr7.1:1737544-1737563 | MS.gene025987:CDS | 50.0% | |
ACAGATGTGGCTTCACCAAG+CGG | - | chr7.1:1737834-1737853 | MS.gene025987:CDS | 50.0% | |
AGGACAACGGTATACGTGGA+TGG | - | chr7.1:1737541-1737560 | MS.gene025987:CDS | 50.0% | |
AGGTGAGGCCTTGAAGGTTA+AGG | + | chr7.1:1736891-1736910 | None:intergenic | 50.0% | |
ATCAGGTTCAGCTTGGGTGA+TGG | + | chr7.1:1737073-1737092 | None:intergenic | 50.0% | |
ATGTCAGGTGTCTCTACAGG+GGG | - | chr7.1:1737936-1737955 | MS.gene025987:intron | 50.0% | |
CGACAATGAGGATGTCACTG+TGG | - | chr7.1:1737986-1738005 | MS.gene025987:CDS | 50.0% | |
CTGCTGGAAACTTAGCTGCT+GGG | - | chr7.1:1737691-1737710 | MS.gene025987:intron | 50.0% | |
CTGTTAAGGTGAGGCCTTGA+AGG | + | chr7.1:1736897-1736916 | None:intergenic | 50.0% | |
GACAACGGTATACGTGGATG+GGG | - | chr7.1:1737543-1737562 | MS.gene025987:CDS | 50.0% | |
GCTATGTCAGGTGTCTCTAC+AGG | - | chr7.1:1737933-1737952 | MS.gene025987:intron | 50.0% | |
GGACAACGGTATACGTGGAT+GGG | - | chr7.1:1737542-1737561 | MS.gene025987:CDS | 50.0% | |
GGCCTCACCTTAACAGATGA+AGG | - | chr7.1:1736901-1736920 | MS.gene025987:CDS | 50.0% | |
GGTCTGAATCAACCTCGTGT+GGG | - | chr7.1:1737267-1737286 | MS.gene025987:CDS | 50.0% | |
GTACCTAAACGCCTTACCAC+TGG | + | chr7.1:1737582-1737601 | None:intergenic | 50.0% | |
GTACGGCTGCTACAAACATC+TGG | - | chr7.1:1737598-1737617 | MS.gene025987:CDS | 50.0% | |
GTAGAGACACCTGACATAGC+TGG | + | chr7.1:1737933-1737952 | None:intergenic | 50.0% | |
GTGATGGTAACACGTTTCCC+TGG | + | chr7.1:1737057-1737076 | None:intergenic | 50.0% | |
TACTGCTGTGGACGACAATG+AGG | - | chr7.1:1737974-1737993 | MS.gene025987:CDS | 50.0% | |
TCACCTGCTTGACGTTGCAA+AGG | - | chr7.1:1737113-1737132 | MS.gene025987:CDS | 50.0% | |
TCATCTGGACATATGGGTGC+AGG | - | chr7.1:1737227-1737246 | MS.gene025987:CDS | 50.0% | |
TGAGTCTCCATAGTGAGTCG+CGG | + | chr7.1:1737882-1737901 | None:intergenic | 50.0% | |
TGCTACAAACATCTGGCTGC+AGG | - | chr7.1:1737605-1737624 | MS.gene025987:intron | 50.0% | |
TGCTGGGCCATCAGAAAAGA+GGG | - | chr7.1:1737707-1737726 | MS.gene025987:intron | 50.0% | |
TGGTCTGAATCAACCTCGTG+TGG | - | chr7.1:1737266-1737285 | MS.gene025987:CDS | 50.0% | |
TTGCAACGTCAAGCAGGTGA+TGG | + | chr7.1:1737113-1737132 | None:intergenic | 50.0% | |
! | AGCGCAAGAACGAGTGGATT+AGG | + | chr7.1:1737909-1737928 | None:intergenic | 50.0% |
! | GGGGTGTTCTGTTATCTGTG+TGG | - | chr7.1:1737468-1737487 | MS.gene025987:CDS | 50.0% |
! | GGTCAACATGTTTCTGCTGC+TGG | - | chr7.1:1737675-1737694 | MS.gene025987:intron | 50.0% |
! | GTCAAGTGTTGCTGGGGATA+TGG | - | chr7.1:1738088-1738107 | MS.gene025987:CDS | 50.0% |
!! | CGAGTTTGGTTTGTTCCGCT+TGG | + | chr7.1:1737852-1737871 | None:intergenic | 50.0% |
ATGGGGCATATTTGGAGGCC+AGG | - | chr7.1:1737036-1737055 | MS.gene025987:CDS | 55.0% | |
CAACGGTATACGTGGATGGG+GGG | - | chr7.1:1737545-1737564 | MS.gene025987:CDS | 55.0% | |
CCTCGTGTGGGCAATGGAAT+CGG | - | chr7.1:1737279-1737298 | MS.gene025987:CDS | 55.0% | |
CTGACAAGACCTGCCCGAAT+AGG | - | chr7.1:1737505-1737524 | MS.gene025987:CDS | 55.0% | |
CTGCTGGGCCATCAGAAAAG+AGG | - | chr7.1:1737706-1737725 | MS.gene025987:intron | 55.0% | |
CTTGCGCTACCAGCTATGTC+AGG | - | chr7.1:1737921-1737940 | MS.gene025987:intron | 55.0% | |
GAGGAGGACAACGGTATACG+TGG | - | chr7.1:1737537-1737556 | MS.gene025987:CDS | 55.0% | |
GCTGCTGGAAACTTAGCTGC+TGG | - | chr7.1:1737690-1737709 | MS.gene025987:intron | 55.0% | |
GCTTGACGTTGCAAAGGTCC+TGG | - | chr7.1:1737119-1737138 | MS.gene025987:CDS | 55.0% | |
GGACCTTTGCAACGTCAAGC+AGG | + | chr7.1:1737119-1737138 | None:intergenic | 55.0% | |
GTATACGTGGATGGGGGGAA+TGG | - | chr7.1:1737550-1737569 | MS.gene025987:CDS | 55.0% | |
GTTGCAAAGGTCCTGGAGGA+GGG | - | chr7.1:1737126-1737145 | MS.gene025987:CDS | 55.0% | |
TGACGTTGCAAAGGTCCTGG+AGG | - | chr7.1:1737122-1737141 | MS.gene025987:CDS | 55.0% | |
TGGGGCATATTTGGAGGCCA+GGG | - | chr7.1:1737037-1737056 | MS.gene025987:CDS | 55.0% | |
TTGCAAAGGTCCTGGAGGAG+GGG | - | chr7.1:1737127-1737146 | MS.gene025987:CDS | 55.0% | |
! | ACGCTTGCTGGAACAACTCC+AGG | + | chr7.1:1737198-1737217 | None:intergenic | 55.0% |
! | GTGGTGGAACGTATTGCTCC+TGG | - | chr7.1:1737177-1737196 | MS.gene025987:CDS | 55.0% |
CCGATTCCATTGCCCACACG+AGG | + | chr7.1:1737282-1737301 | None:intergenic | 60.0% | |
CGTTGCAAAGGTCCTGGAGG+AGG | - | chr7.1:1737125-1737144 | MS.gene025987:CDS | 60.0% | |
GGGGGAATGGCTGAAACCAG+TGG | - | chr7.1:1737563-1737582 | MS.gene025987:CDS | 60.0% | |
GTCTCTGCCGCGACTCACTA+TGG | - | chr7.1:1737872-1737891 | MS.gene025987:CDS | 60.0% | |
! | GCCAGCGCCCTCTTTTCTGA+TGG | + | chr7.1:1737717-1737736 | None:intergenic | 60.0% |
! | GCCATCAGAAAAGAGGGCGC+TGG | - | chr7.1:1737713-1737732 | MS.gene025987:intron | 60.0% |
! | GCTGGTAGCGCAAGAACGAG+TGG | + | chr7.1:1737915-1737934 | None:intergenic | 60.0% |
!! | TCAGAAAAGAGGGCGCTGGC+AGG | - | chr7.1:1737717-1737736 | MS.gene025987:intron | 60.0% |
GTCGCGGCAGAGACCGAGTT+TGG | + | chr7.1:1737866-1737885 | None:intergenic | 65.0% | |
AGAGCCACGGCCCCTCCTCC+AGG | + | chr7.1:1737140-1737159 | None:intergenic | 75.0% | |
AGGTCCTGGAGGAGGGGCCG+TGG | - | chr7.1:1737133-1737152 | MS.gene025987:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 1736874 | 1738160 | 1736874 | ID=MS.gene025987 |
chr7.1 | mRNA | 1736874 | 1738160 | 1736874 | ID=MS.gene025987.t1;Parent=MS.gene025987 |
chr7.1 | exon | 1737969 | 1738160 | 1737969 | ID=MS.gene025987.t1.exon1;Parent=MS.gene025987.t1 |
chr7.1 | CDS | 1737969 | 1738160 | 1737969 | ID=cds.MS.gene025987.t1;Parent=MS.gene025987.t1 |
chr7.1 | exon | 1737786 | 1737899 | 1737786 | ID=MS.gene025987.t1.exon2;Parent=MS.gene025987.t1 |
chr7.1 | CDS | 1737786 | 1737899 | 1737786 | ID=cds.MS.gene025987.t1;Parent=MS.gene025987.t1 |
chr7.1 | exon | 1737437 | 1737620 | 1737437 | ID=MS.gene025987.t1.exon3;Parent=MS.gene025987.t1 |
chr7.1 | CDS | 1737437 | 1737620 | 1737437 | ID=cds.MS.gene025987.t1;Parent=MS.gene025987.t1 |
chr7.1 | exon | 1736874 | 1737328 | 1736874 | ID=MS.gene025987.t1.exon4;Parent=MS.gene025987.t1 |
chr7.1 | CDS | 1736874 | 1737328 | 1736874 | ID=cds.MS.gene025987.t1;Parent=MS.gene025987.t1 |
Gene Sequence |
Protein sequence |