AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65474

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65474.t1 MTR_0010s0370 60.556 180 71 0 1 180 1 180 4.45e-73 232
MS.gene65474.t1 MTR_0010s0350 60.556 180 71 0 1 180 1 180 4.45e-73 232
MS.gene65474.t1 MTR_1g051330 45.662 219 105 1 384 602 336 540 6.76e-59 210
MS.gene65474.t1 MTR_2g063055 60.684 117 46 0 435 551 63 179 3.34e-45 158
MS.gene65474.t1 MTR_1g036720 61.818 110 42 0 1 110 1 110 7.24e-43 149
MS.gene65474.t1 MTR_8g463110 35.294 221 130 2 389 602 186 400 3.76e-38 150
MS.gene65474.t1 MTR_4g020630 35.945 217 126 2 393 602 126 336 5.82e-34 135
MS.gene65474.t1 MTR_1g036710 37.799 209 76 7 132 335 1 160 7.37e-33 128
MS.gene65474.t1 MTR_6g033215 32.738 168 113 0 32 199 127 294 3.02e-26 109
MS.gene65474.t1 MTR_3g053920 30.357 168 98 3 4 171 8 156 2.91e-20 91.7
MS.gene65474.t1 MTR_7g089990 43.519 108 59 1 104 209 86 193 3.67e-20 89.7
MS.gene65474.t1 MTR_8g019640 26.866 201 97 2 403 602 67 218 3.97e-17 84.3
MS.gene65474.t1 MTR_4g103530 38.202 89 55 0 57 145 5 93 5.82e-17 80.1
MS.gene65474.t1 MTR_2g061500 32.000 125 83 1 3 127 7 129 6.04e-17 78.2
MS.gene65474.t1 MTR_6g034215 34.884 129 77 4 398 522 199 324 5.86e-16 79.7
MS.gene65474.t1 MTR_1g100687 37.500 104 64 1 389 491 124 227 1.78e-15 76.6
MS.gene65474.t1 MTR_7g106180 27.273 143 103 1 33 175 25 166 1.15e-13 71.2
MS.gene65474.t1 MTR_3g024240 34.711 121 77 1 82 200 55 175 1.92e-13 69.7
MS.gene65474.t1 MTR_3g436680 26.341 205 127 4 383 583 32 216 2.56e-13 73.6
MS.gene65474.t1 MTR_7g063500 37.647 85 53 0 462 546 38 122 2.80e-13 67.4
MS.gene65474.t1 MTR_7g015270 42.857 91 52 0 511 601 93 183 4.15e-13 69.7
MS.gene65474.t1 MTR_7g057470 27.184 206 129 8 389 580 410 608 4.70e-13 72.8
MS.gene65474.t1 MTR_7g057490 27.184 206 129 8 389 580 410 608 4.70e-13 72.8
MS.gene65474.t1 MTR_6g046587 66.038 53 18 0 384 436 231 283 9.42e-13 69.3
MS.gene65474.t1 MTR_7g033160 40.000 70 42 0 498 567 3 72 1.24e-12 64.3
MS.gene65474.t1 MTR_7g011710 34.091 88 58 0 53 140 1 88 4.67e-12 64.7
MS.gene65474.t1 MTR_0042s0130 33.981 103 67 1 389 490 225 327 4.88e-12 68.2
MS.gene65474.t1 MTR_5g069440 29.457 129 87 2 444 571 33 158 5.04e-12 64.7
MS.gene65474.t1 MTR_8g442690 28.070 171 111 4 393 553 159 327 1.01e-11 67.8
MS.gene65474.t1 MTR_7g083690 25.000 196 128 6 402 584 805 994 3.97e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65474.t1 AT3G31430 25.701 214 153 3 3 215 103 311 1.97e-20 93.2
MS.gene65474.t1 AT5G18636 25.000 212 157 1 4 215 9 218 1.06e-18 88.6
MS.gene65474.t1 AT5G25200 25.000 212 157 1 4 215 9 218 1.25e-18 88.6
MS.gene65474.t1 AT2G41590 25.943 212 155 1 4 215 9 218 2.09e-18 87.8
MS.gene65474.t1 AT2G02103 24.528 212 158 1 4 215 9 218 3.27e-18 87.8
MS.gene65474.t1 AT2G17920 23.585 212 160 1 4 215 9 218 4.56e-17 82.8
MS.gene65474.t1 AT3G57587 24.528 212 158 1 4 215 9 218 4.82e-16 80.5
MS.gene65474.t1 AT2G13450 23.729 236 173 3 4 234 9 242 6.79e-16 80.5
MS.gene65474.t1 AT5G36228 23.005 213 162 1 3 215 8 218 1.35e-15 79.3
MS.gene65474.t1 AT3G47920 31.313 99 68 0 117 215 49 147 3.02e-13 71.2
MS.gene65474.t1 AT4G02000 25.949 158 110 3 82 234 7 162 3.87e-13 71.2
MS.gene65474.t1 AT5G36225 31.111 90 62 0 121 210 17 106 1.40e-12 68.2

Find 153 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCATTCAGTACCCTTT+TGG 0.150758 1.1:+26391370 MS.gene65474:CDS
CAGTTTGGTTACAATGTTAT+TGG 0.221764 1.1:-26393040 None:intergenic
GCCTGAAGGTTCGCAACTTT+TGG 0.231254 1.1:+26393176 MS.gene65474:CDS
CTGGACGTTTGATCTTCTTC+TGG 0.263503 1.1:-26391560 None:intergenic
TTCAGCTTGAACAAAATAAT+TGG 0.267099 1.1:+26392923 MS.gene65474:CDS
TTCTTCTTGAAGCAGTAAAT+TGG 0.276835 1.1:-26393217 None:intergenic
TGCACCTGCAGAGCCGTTTC+CGG 0.285309 1.1:-26391817 None:intergenic
CTCATGTTGTCAAAGAAAAT+TGG 0.290297 1.1:+26393004 MS.gene65474:CDS
GAAAATTCATTGCTCTTTGA+TGG 0.304353 1.1:-26391933 None:intergenic
TAATCTCATTGGTGACTTCC+TGG 0.313084 1.1:+26391452 MS.gene65474:CDS
TTCTTACCAACAAACCTATT+CGG 0.315947 1.1:+26391142 MS.gene65474:CDS
CGGAAATTATCGCTGAGTTT+TGG 0.316795 1.1:+26391178 MS.gene65474:CDS
TCTTACCAACAAACCTATTC+GGG 0.317167 1.1:+26391143 MS.gene65474:CDS
TGCTTCAAGAAGAAAGTTAC+TGG 0.326735 1.1:+26393226 MS.gene65474:CDS
GGTTGGCCGTTTCTGAAGTT+GGG 0.333377 1.1:-26391875 None:intergenic
CTGACGGTGGCGACCACTCT+TGG 0.353069 1.1:-26391788 None:intergenic
GAAATTCAAATATGAGAGAT+TGG 0.357914 1.1:+26391602 MS.gene65474:CDS
TGCTATTACTGCGGCACCCT+GGG 0.359611 1.1:+26391633 MS.gene65474:CDS
TGACGATGGTGTTCGCCATT+GGG 0.367660 1.1:+26391698 MS.gene65474:CDS
GAATGCTACTCACACCTTCC+AGG 0.376781 1.1:+26392094 MS.gene65474:CDS
GCTGCCGGAAACGGCTCTGC+AGG 0.378195 1.1:+26391813 MS.gene65474:CDS
ACTCAGGGAAAGGTTTGATA+TGG 0.386056 1.1:-26391037 None:intergenic
TTGGCTATTGGAACCTGATC+TGG 0.386299 1.1:+26392981 MS.gene65474:CDS
CTGCTATTACTGCGGCACCC+TGG 0.388494 1.1:+26391632 MS.gene65474:CDS
TGTTCAAGCTGAAGCATGAT+AGG 0.395666 1.1:-26392913 None:intergenic
GAATGGAGAGGGACATGCTT+AGG 0.399439 1.1:-26391357 None:intergenic
AACTTGAATGTGAAAAGGTT+TGG 0.400013 1.1:-26391237 None:intergenic
CTCATTCAATGCCTCATCAT+GGG 0.403388 1.1:-26391973 None:intergenic
CTCAATACAGTAGCTCAGTT+TGG 0.404294 1.1:-26393055 None:intergenic
GACAGCAGCTGTTCCCTTGT+AGG 0.407252 1.1:+26391114 MS.gene65474:CDS
CCCATTTGGATGCCGCAGTT+TGG 0.411578 1.1:-26393346 None:intergenic
ACCAAACTGCGGCATCCAAA+TGG 0.412207 1.1:+26393345 MS.gene65474:CDS
CTGCTGTCAATGGATTGGTT+AGG 0.414102 1.1:-26391099 None:intergenic
CCAAACTGCGGCATCCAAAT+GGG 0.420779 1.1:+26393346 MS.gene65474:CDS
CCTCATTCAATGCCTCATCA+TGG 0.421879 1.1:-26391974 None:intergenic
TCCAAAAGTTGCGAACCTTC+AGG 0.423253 1.1:-26393177 None:intergenic
GGAAGGTGTGAGTAGCATTC+TGG 0.424870 1.1:-26392091 None:intergenic
GAAGTGAGCCAGACCCCATT+TGG 0.427540 1.1:-26393360 None:intergenic
CATATAAGACCTGAGATGAT+TGG 0.432698 1.1:-26391496 None:intergenic
GTCATCATGTATCCCCGAAT+AGG 0.437282 1.1:-26391156 None:intergenic
GTCATGAATTTGCACCCAAA+AGG 0.439582 1.1:-26391385 None:intergenic
CAAATTCATGACATTCCAAC+AGG 0.439684 1.1:+26391396 MS.gene65474:CDS
ACAATTCTTGTTTCCCCACC+TGG 0.442073 1.1:-26391579 None:intergenic
TGCGGCATCCAAATGGGGTC+TGG 0.449649 1.1:+26393352 MS.gene65474:CDS
AGGTTGGCCGTTTCTGAAGT+TGG 0.451896 1.1:-26391876 None:intergenic
ACTGTAGATTGTTGTTCTCC+TGG 0.453023 1.1:-26392112 None:intergenic
ATGACGATGGTGTTCGCCAT+TGG 0.455096 1.1:+26391697 MS.gene65474:CDS
AATGGAGAGGGACATGCTTA+GGG 0.458755 1.1:-26391356 None:intergenic
CCGTCAGAGGCTGCCGGAAA+CGG 0.459252 1.1:+26391804 MS.gene65474:CDS
AAAATTCATTGCTCTTTGAT+GGG 0.460762 1.1:-26391932 None:intergenic
TTGACAACATGAGCCAGATC+AGG 0.463169 1.1:-26392994 None:intergenic
GGAAGAACTTGAATGTGAAA+AGG 0.463887 1.1:-26391242 None:intergenic
CTTAGTGAGAATCTAGTTAT+CGG 0.465316 1.1:-26393493 None:intergenic
AGTTGCGAACCTTCAGGCTC+AGG 0.465514 1.1:-26393171 None:intergenic
ATTATCATTAAATTCAGCTC+TGG 0.468026 1.1:-26392036 None:intergenic
GGCCAGAGTTGCGTGTGGAT+AGG 0.468826 1.1:+26391721 MS.gene65474:CDS
TGCTGTCAATGGATTGGTTA+GGG 0.471458 1.1:-26391098 None:intergenic
ATCTTCTTCTGGTGCTTGAG+AGG 0.472497 1.1:-26391549 None:intergenic
CGGAGCTTGAAACACAAGTC+TGG 0.472838 1.1:-26393473 None:intergenic
CAGGAGCTTGGTAATCTCAT+TGG 0.473036 1.1:+26391441 MS.gene65474:CDS
AAGGGAACAGCTGCTGTCAA+TGG 0.478974 1.1:-26391109 None:intergenic
TGCCTATCCACACGCAACTC+TGG 0.480310 1.1:-26391723 None:intergenic
ACAGCAGCTGTTCCCTTGTA+GGG 0.484001 1.1:+26391115 MS.gene65474:CDS
GAGTTTGCAACGTTGCTTGT+GGG 0.488523 1.1:-26392864 None:intergenic
AAAATAAGTCCAATCATCTC+AGG 0.492136 1.1:+26391487 MS.gene65474:CDS
GTATCCCCGAATAGGTTTGT+TGG 0.493631 1.1:-26391148 None:intergenic
TTTAAGCAAATTAATCAGGT+TGG 0.493948 1.1:-26391892 None:intergenic
ACTCATCATCTTCGTCACTC+AGG 0.502573 1.1:-26391053 None:intergenic
AGTCCACACCTATGCAGGTC+GGG 0.512029 1.1:+26392132 MS.gene65474:CDS
CTTTCAGTCATGAAGCCTGT+TGG 0.513915 1.1:-26391411 None:intergenic
AAATTCAAATATGAGAGATT+GGG 0.516287 1.1:+26391603 MS.gene65474:CDS
TGGTAAGAAATCGCCCTACA+AGG 0.516910 1.1:-26391128 None:intergenic
CATGACTGAAAGAGTAGGCC+AGG 0.518135 1.1:+26391422 MS.gene65474:CDS
GTGGATAGGCAGAGAAATGC+AGG 0.519407 1.1:+26391735 MS.gene65474:CDS
TCATGAATTTGCACCCAAAA+GGG 0.521144 1.1:-26391384 None:intergenic
TGCGCTGCATATCACGGTAG+TGG 0.523471 1.1:-26391263 None:intergenic
AGTAATCTTCAATGTGTCCC+AGG 0.524255 1.1:-26391650 None:intergenic
TCTGATTCTTGATGTCCTCC+CGG 0.526778 1.1:+26391323 MS.gene65474:CDS
TATGCAGCGCATTCTGAAGA+AGG 0.526891 1.1:+26391275 MS.gene65474:CDS
TTTCCGGCAGCCTCTGACGG+TGG 0.527554 1.1:-26391801 None:intergenic
GACGATGGTGTTCGCCATTG+GGG 0.529766 1.1:+26391699 MS.gene65474:CDS
TAGATTGTTGTTCTCCTGGA+AGG 0.529996 1.1:-26392108 None:intergenic
AGCATCCCCAACTTCAGAAA+CGG 0.531636 1.1:+26391869 MS.gene65474:CDS
AACAGCTGCTGTCAATGGAT+TGG 0.532568 1.1:-26391104 None:intergenic
TCTACAGTCCACACCTATGC+AGG 0.533465 1.1:+26392127 MS.gene65474:CDS
GGGGATGCTGCATTCAATGC+TGG 0.534999 1.1:-26391855 None:intergenic
GTTGGCCGTTTCTGAAGTTG+GGG 0.538908 1.1:-26391874 None:intergenic
AGAGTGGTCGCCACCGTCAG+AGG 0.539017 1.1:+26391791 MS.gene65474:CDS
CTGGTGTGCCCGACCTGCAT+AGG 0.541833 1.1:-26392140 None:intergenic
CAAACTGAGCTACTGTATTG+AGG 0.541954 1.1:+26393056 MS.gene65474:CDS
GAAAGAGTAGGCCAGGAGCT+TGG 0.542274 1.1:+26391429 MS.gene65474:CDS
CATGTGTGCTCATCTCTTCG+TGG 0.543880 1.1:-26393383 None:intergenic
GTATTGAGGATATAAAATCC+TGG 0.547440 1.1:+26393070 MS.gene65474:CDS
ATAGCCAAGAGTTGTTAAAA+CGG 0.547724 1.1:-26392966 None:intergenic
CTCATCATCTTCGTCACTCA+GGG 0.547926 1.1:-26391052 None:intergenic
CATCTTCGTCACTCAGGGAA+AGG 0.550139 1.1:-26391047 None:intergenic
TGATTACAACAAATGCAAAA+CGG 0.554151 1.1:+26392012 MS.gene65474:CDS
CCGTTTCCGGCAGCCTCTGA+CGG 0.555131 1.1:-26391804 None:intergenic
TCATTCAATGCCTCATCATG+GGG 0.559245 1.1:-26391972 None:intergenic
CAATGAGATTACCAAGCTCC+TGG 0.559666 1.1:-26391440 None:intergenic
TTTGATGGGCGCAATAAATG+TGG 0.561461 1.1:-26391918 None:intergenic
GGAAATTTCTGCTATTACTG+CGG 0.562131 1.1:+26391624 MS.gene65474:CDS
GTTGCGAACCTTCAGGCTCA+GGG 0.562916 1.1:-26393170 None:intergenic
ATGCAGCGCATTCTGAAGAA+GGG 0.566764 1.1:+26391276 MS.gene65474:CDS
GGCATTGAATGAGGAAAATG+TGG 0.567208 1.1:+26391983 MS.gene65474:CDS
CCATGATGAGGCATTGAATG+AGG 0.568600 1.1:+26391974 MS.gene65474:CDS
GCGCACGCAGCTGCTGAATA+CGG 0.568704 1.1:-26393122 None:intergenic
ATGTGTGCTCATCTCTTCGT+GGG 0.570862 1.1:-26393382 None:intergenic
TCGCCACCGTCAGAGGCTGC+CGG 0.571004 1.1:+26391798 MS.gene65474:CDS
TTGGTTACAATGTTATTGGA+CGG 0.571303 1.1:-26393036 None:intergenic
TCGAAGTGGCTGAGAGAGGA+GGG 0.578510 1.1:+26391765 MS.gene65474:CDS
ATCGAAGTGGCTGAGAGAGG+AGG 0.580406 1.1:+26391764 MS.gene65474:CDS
TCAGAATGCGCTGCATATCA+CGG 0.580652 1.1:-26391269 None:intergenic
TTGATATCAACTCCTCTACC+AGG 0.583013 1.1:-26391204 None:intergenic
AGTTCGTTCCCTGAGCCTGA+AGG 0.583497 1.1:+26393162 MS.gene65474:CDS
AGGATGGTTAGACTTAGTCC+AGG 0.585919 1.1:-26393088 None:intergenic
TGAGAGAGGAGGGCCAAGAG+TGG 0.587371 1.1:+26391775 MS.gene65474:CDS
AGAGTTTGCAACGTTGCTTG+TGG 0.588475 1.1:-26392865 None:intergenic
TGAATACGGCTATGAAAATG+AGG 0.591762 1.1:-26393108 None:intergenic
CAGAAGAAGATCAAACGTCC+AGG 0.592007 1.1:+26391561 MS.gene65474:CDS
GAAGATCAAACGTCCAGGTG+GGG 0.594874 1.1:+26391566 MS.gene65474:CDS
AGAAGATCAAACGTCCAGGT+GGG 0.599123 1.1:+26391565 MS.gene65474:CDS
GCACCCAAAAGGGTACTGAA+TGG 0.599468 1.1:-26391374 None:intergenic
GCATTCTGAAGAAGGGGCCG+TGG 0.602516 1.1:+26391283 MS.gene65474:CDS
TACGGCTATGAAAATGAGGA+TGG 0.604890 1.1:-26393104 None:intergenic
CAAAAGGGTACTGAATGGAG+AGG 0.605754 1.1:-26391369 None:intergenic
TGGTTAGGGATATCATCGGT+TGG 0.608468 1.1:-26391084 None:intergenic
ACGATCGAAGTGGCTGAGAG+AGG 0.610454 1.1:+26391761 MS.gene65474:CDS
ACGATGGTGTTCGCCATTGG+GGG 0.611391 1.1:+26391700 MS.gene65474:CDS
GGTAAGAAATCGCCCTACAA+GGG 0.613790 1.1:-26391127 None:intergenic
ATAGGCGTGTGGTCAGACAT+AGG 0.620596 1.1:-26392895 None:intergenic
GTGCCCGACCTGCATAGGTG+TGG 0.625937 1.1:-26392135 None:intergenic
CAGTCCACACCTATGCAGGT+CGG 0.626597 1.1:+26392131 MS.gene65474:CDS
TGCAGCGCATTCTGAAGAAG+GGG 0.630545 1.1:+26391277 MS.gene65474:CDS
GTAATCTTCAATGTGTCCCA+GGG 0.637517 1.1:-26391649 None:intergenic
AAGAAGATCAAACGTCCAGG+TGG 0.643601 1.1:+26391564 MS.gene65474:CDS
GGAGGACATCAAGAATCAGA+AGG 0.645308 1.1:-26391320 None:intergenic
GGATTGGTTAGGGATATCAT+CGG 0.646224 1.1:-26391088 None:intergenic
CAAACTGCGGCATCCAAATG+GGG 0.654057 1.1:+26393347 MS.gene65474:CDS
CTTACCAACAAACCTATTCG+GGG 0.656672 1.1:+26391144 MS.gene65474:CDS
CATTCAATGCCTCATCATGG+GGG 0.661056 1.1:-26391971 None:intergenic
AAAAGGGTACTGAATGGAGA+GGG 0.661247 1.1:-26391368 None:intergenic
GCAGGTGCAGACATCAGTAA+CGG 0.664226 1.1:+26391831 MS.gene65474:CDS
TATTCGGGGATACATGATGA+CGG 0.666347 1.1:+26391158 MS.gene65474:CDS
ATGGAGAGGGACATGCTTAG+GGG 0.668819 1.1:-26391355 None:intergenic
ATTCAATGCCTCATCATGGG+GGG 0.671045 1.1:-26391970 None:intergenic
GGCTTCATGACTGAAAGAGT+AGG 0.692578 1.1:+26391417 MS.gene65474:CDS
GCTGAAGCATGATAGGCGTG+TGG 0.693559 1.1:-26392906 None:intergenic
ATGCAGGAAGACGATCGAAG+TGG 0.695691 1.1:+26391751 MS.gene65474:CDS
AGGTGTGAGTAGCATTCTGG+TGG 0.700720 1.1:-26392088 None:intergenic
TATTCTGTTACAGATGACGA+TGG 0.726938 1.1:+26391684 MS.gene65474:CDS
AGGTGATTATCGAAATACCA+CGG 0.729333 1.1:-26391300 None:intergenic
AAAATACTATCACCAAACTG+CGG 0.739915 1.1:+26393334 MS.gene65474:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCAAATATGAGAGATT+GGG + chr1.1:26391603-26391622 MS.gene65474:CDS 20.0%
!!! GATTTTTAAGCAAATTAATC+AGG - chr1.1:26391899-26391918 None:intergenic 20.0%
!!! TAAAACGGAAACTTTTATAA+GGG - chr1.1:26392954-26392973 None:intergenic 20.0%
!!! TTAAAACGGAAACTTTTATA+AGG - chr1.1:26392955-26392974 None:intergenic 20.0%
! AAAATTCATTGCTCTTTGAT+GGG - chr1.1:26391935-26391954 None:intergenic 25.0%
! ATTATCATTAAATTCAGCTC+TGG - chr1.1:26392039-26392058 None:intergenic 25.0%
! CATTGCATAAAGTTTCAATA+AGG - chr1.1:26392339-26392358 None:intergenic 25.0%
! GAAATTCAAATATGAGAGAT+TGG + chr1.1:26391602-26391621 MS.gene65474:CDS 25.0%
! TCAATAAGGATAAGAATATC+CGG - chr1.1:26392325-26392344 None:intergenic 25.0%
! TGATTACAACAAATGCAAAA+CGG + chr1.1:26392012-26392031 MS.gene65474:CDS 25.0%
! TTCAGCTTGAACAAAATAAT+TGG + chr1.1:26392923-26392942 MS.gene65474:CDS 25.0%
! TTTAAGCAAATTAATCAGGT+TGG - chr1.1:26391895-26391914 None:intergenic 25.0%
! TTTCAATGATCATTTATCAC+TGG + chr1.1:26392648-26392667 MS.gene65474:intron 25.0%
!! AAAACGGAAACTTTTATAAG+GGG - chr1.1:26392953-26392972 None:intergenic 25.0%
!!! TATTTTTGACATCATATTCC+AGG - chr1.1:26391473-26391492 None:intergenic 25.0%
!!! TTATTTCTCGACTATTTTTC+AGG + chr1.1:26393413-26393432 MS.gene65474:CDS 25.0%
AAAATAAGTCCAATCATCTC+AGG + chr1.1:26391487-26391506 MS.gene65474:CDS 30.0%
AAAATACTATCACCAAACTG+CGG + chr1.1:26393334-26393353 MS.gene65474:CDS 30.0%
AAAATAGTGATCAAAGCCAA+TGG - chr1.1:26392389-26392408 None:intergenic 30.0%
AACTTGAATGTGAAAAGGTT+TGG - chr1.1:26391240-26391259 None:intergenic 30.0%
AAGACTCTATTAAAGGTGAA+TGG + chr1.1:26392515-26392534 MS.gene65474:intron 30.0%
ACCTTTAATAGAGTCTTGAA+TGG - chr1.1:26392512-26392531 None:intergenic 30.0%
ATAGCCAAGAGTTGTTAAAA+CGG - chr1.1:26392969-26392988 None:intergenic 30.0%
CAGTTTGGTTACAATGTTAT+TGG - chr1.1:26393043-26393062 None:intergenic 30.0%
CTCATGTTGTCAAAGAAAAT+TGG + chr1.1:26393004-26393023 MS.gene65474:CDS 30.0%
GAAAATTCATTGCTCTTTGA+TGG - chr1.1:26391936-26391955 None:intergenic 30.0%
GTATTGAGGATATAAAATCC+TGG + chr1.1:26393070-26393089 MS.gene65474:CDS 30.0%
GTTCCAAGATATGATATTCA+TGG - chr1.1:26392239-26392258 None:intergenic 30.0%
TCCATTCAAGACTCTATTAA+AGG + chr1.1:26392508-26392527 MS.gene65474:intron 30.0%
TTCTTACCAACAAACCTATT+CGG + chr1.1:26391142-26391161 MS.gene65474:CDS 30.0%
TTCTTCTTGAAGCAGTAAAT+TGG - chr1.1:26393220-26393239 None:intergenic 30.0%
TTGGTTACAATGTTATTGGA+CGG - chr1.1:26393039-26393058 None:intergenic 30.0%
! TCAAAGAGCAATGAATTTTC+AGG + chr1.1:26391936-26391955 MS.gene65474:CDS 30.0%
! TTCACATGGTTCAAAAGTAT+CGG + chr1.1:26392775-26392794 MS.gene65474:intron 30.0%
! TTTTAACAACTCTTGGCTAT+TGG + chr1.1:26392969-26392988 MS.gene65474:CDS 30.0%
!! CTTTGATCACTATTTTTCTG+TGG + chr1.1:26392393-26392412 MS.gene65474:intron 30.0%
!!! AAAGTTTTTTGGTTGAGAGA+TGG + chr1.1:26393261-26393280 MS.gene65474:CDS 30.0%
AGGTGATTATCGAAATACCA+CGG - chr1.1:26391303-26391322 None:intergenic 35.0%
CAAATTCATGACATTCCAAC+AGG + chr1.1:26391396-26391415 MS.gene65474:CDS 35.0%
CATATAAGACCTGAGATGAT+TGG - chr1.1:26391499-26391518 None:intergenic 35.0%
CTCTATGATCTTCCACTATT+GGG + chr1.1:26392745-26392764 MS.gene65474:intron 35.0%
GAATATCCGGTTTATAGACA+CGG - chr1.1:26392312-26392331 None:intergenic 35.0%
GAGCCATGAATATCATATCT+TGG + chr1.1:26392233-26392252 MS.gene65474:intron 35.0%
GGAAATTTCTGCTATTACTG+CGG + chr1.1:26391624-26391643 MS.gene65474:CDS 35.0%
GGAAGAACTTGAATGTGAAA+AGG - chr1.1:26391245-26391264 None:intergenic 35.0%
TATTCTGTTACAGATGACGA+TGG + chr1.1:26391684-26391703 MS.gene65474:CDS 35.0%
TCATGAATTTGCACCCAAAA+GGG - chr1.1:26391387-26391406 None:intergenic 35.0%
TCTATGATCTTCCACTATTG+GGG + chr1.1:26392746-26392765 MS.gene65474:intron 35.0%
TCTCTATGATCTTCCACTAT+TGG + chr1.1:26392744-26392763 MS.gene65474:intron 35.0%
TCTTACCAACAAACCTATTC+GGG + chr1.1:26391143-26391162 MS.gene65474:CDS 35.0%
TGAATACGGCTATGAAAATG+AGG - chr1.1:26393111-26393130 None:intergenic 35.0%
TGCTTCAAGAAGAAAGTTAC+TGG + chr1.1:26393226-26393245 MS.gene65474:CDS 35.0%
! TATTGGGGTATCAATTCACA+TGG + chr1.1:26392761-26392780 MS.gene65474:intron 35.0%
! TCTAGTTTGCGTTATTCCAT+TGG + chr1.1:26392370-26392389 MS.gene65474:intron 35.0%
!! AATTTGCAGAAGTATTCCAG+AGG - chr1.1:26392450-26392469 None:intergenic 35.0%
!! GTTTCCGTTTTAACAACTCT+TGG + chr1.1:26392962-26392981 MS.gene65474:CDS 35.0%
!! TATTTTTCTGTGGACTGTAC+CGG + chr1.1:26392403-26392422 MS.gene65474:intron 35.0%
!!! ACTATTTTTCAGGCTGTTCA+AGG + chr1.1:26393423-26393442 MS.gene65474:CDS 35.0%
!!! CTATTTTTCAGGCTGTTCAA+GGG + chr1.1:26393424-26393443 MS.gene65474:CDS 35.0%
!!! GACAACGTTCGAAAGTTTTT+TGG + chr1.1:26393250-26393269 MS.gene65474:CDS 35.0%
!!! TACCACCGGTCATTTTTTAT+CGG + chr1.1:26392184-26392203 MS.gene65474:intron 35.0%
!!! TATTTTTCAGGCTGTTCAAG+GGG + chr1.1:26393425-26393444 MS.gene65474:CDS 35.0%
AACAAAAACTCGTCTACCAC+CGG + chr1.1:26392170-26392189 MS.gene65474:CDS 40.0%
ACTCAGGGAAAGGTTTGATA+TGG - chr1.1:26391040-26391059 None:intergenic 40.0%
AGTAATCTTCAATGTGTCCC+AGG - chr1.1:26391653-26391672 None:intergenic 40.0%
CAAACTGAGCTACTGTATTG+AGG + chr1.1:26393056-26393075 MS.gene65474:CDS 40.0%
CAAGATGCTGTGAATGATTG+TGG + chr1.1:26392721-26392740 MS.gene65474:intron 40.0%
CTAATGACTCGAAGAAAGCT+CGG + chr1.1:26392800-26392819 MS.gene65474:intron 40.0%
CTCAATACAGTAGCTCAGTT+TGG - chr1.1:26393058-26393077 None:intergenic 40.0%
CTCATTCAATGCCTCATCAT+GGG - chr1.1:26391976-26391995 None:intergenic 40.0%
CTCTGCCGATAAAAAATGAC+CGG - chr1.1:26392192-26392211 None:intergenic 40.0%
CTTACCAACAAACCTATTCG+GGG + chr1.1:26391144-26391163 MS.gene65474:CDS 40.0%
GAACTGCCTTAACATTTCCA+AGG - chr1.1:26392270-26392289 None:intergenic 40.0%
GATATGATATTCATGGCTCC+CGG - chr1.1:26392232-26392251 None:intergenic 40.0%
GTAATCTTCAATGTGTCCCA+GGG - chr1.1:26391652-26391671 None:intergenic 40.0%
GTCATGAATTTGCACCCAAA+AGG - chr1.1:26391388-26391407 None:intergenic 40.0%
GTGAATTGATACCCCAATAG+TGG - chr1.1:26392760-26392779 None:intergenic 40.0%
GTTCTCTGTCAAACATTCCT+TGG + chr1.1:26392611-26392630 MS.gene65474:intron 40.0%
TACGGCTATGAAAATGAGGA+TGG - chr1.1:26393107-26393126 None:intergenic 40.0%
TATTCGGGGATACATGATGA+CGG + chr1.1:26391158-26391177 MS.gene65474:CDS 40.0%
TCATTCAATGCCTCATCATG+GGG - chr1.1:26391975-26391994 None:intergenic 40.0%
TGTGGGAATATATCTTGCCA+AGG - chr1.1:26392850-26392869 None:intergenic 40.0%
TGTTCAAGCTGAAGCATGAT+AGG - chr1.1:26392916-26392935 None:intergenic 40.0%
TTATCACTGGCAGATAAGAG+AGG + chr1.1:26392661-26392680 MS.gene65474:intron 40.0%
TTGACAGAGAACTGAGATAG+CGG - chr1.1:26392603-26392622 None:intergenic 40.0%
TTGATATCAACTCCTCTACC+AGG - chr1.1:26391207-26391226 None:intergenic 40.0%
! AACATTCCTTGGTGCGTAAT+AGG + chr1.1:26392622-26392641 MS.gene65474:intron 40.0%
! ACATTCCTTGGTGCGTAATA+GGG + chr1.1:26392623-26392642 MS.gene65474:intron 40.0%
! ACTGTAGATTGTTGTTCTCC+TGG - chr1.1:26392115-26392134 None:intergenic 40.0%
! CGGAAATTATCGCTGAGTTT+TGG + chr1.1:26391178-26391197 MS.gene65474:CDS 40.0%
! GGCATTGAATGAGGAAAATG+TGG + chr1.1:26391983-26392002 MS.gene65474:CDS 40.0%
! TAATCTCATTGGTGACTTCC+TGG + chr1.1:26391452-26391471 MS.gene65474:CDS 40.0%
! TAGATTGTTGTTCTCCTGGA+AGG - chr1.1:26392111-26392130 None:intergenic 40.0%
! TCTCCATTCAGTACCCTTTT+GGG + chr1.1:26391371-26391390 MS.gene65474:CDS 40.0%
! TTTGATGGGCGCAATAAATG+TGG - chr1.1:26391921-26391940 None:intergenic 40.0%
!! AAAAGGGTACTGAATGGAGA+GGG - chr1.1:26391371-26391390 None:intergenic 40.0%
!! ATTTTTCTGTGGACTGTACC+GGG + chr1.1:26392404-26392423 MS.gene65474:intron 40.0%
!! GGATTGGTTAGGGATATCAT+CGG - chr1.1:26391091-26391110 None:intergenic 40.0%
!! GTAGACGAGTTTTTGTTGTC+TGG - chr1.1:26392167-26392186 None:intergenic 40.0%
!! TGCTGTCAATGGATTGGTTA+GGG - chr1.1:26391101-26391120 None:intergenic 40.0%
AAATCCCCTATTACGCACCA+AGG - chr1.1:26392631-26392650 None:intergenic 45.0%
AACAAAATCCCCCCATGATG+AGG + chr1.1:26391962-26391981 MS.gene65474:CDS 45.0%
AACAGCTGCTGTCAATGGAT+TGG - chr1.1:26391107-26391126 None:intergenic 45.0%
AAGAAGATCAAACGTCCAGG+TGG + chr1.1:26391564-26391583 MS.gene65474:CDS 45.0%
AATGGAGAGGGACATGCTTA+GGG - chr1.1:26391359-26391378 None:intergenic 45.0%
ACTCATCATCTTCGTCACTC+AGG - chr1.1:26391056-26391075 None:intergenic 45.0%
AGAAGATCAAACGTCCAGGT+GGG + chr1.1:26391565-26391584 MS.gene65474:CDS 45.0%
AGAGTTTGCAACGTTGCTTG+TGG - chr1.1:26392868-26392887 None:intergenic 45.0%
AGCATCCCCAACTTCAGAAA+CGG + chr1.1:26391869-26391888 MS.gene65474:CDS 45.0%
AGGATGGTTAGACTTAGTCC+AGG - chr1.1:26393091-26393110 None:intergenic 45.0%
ATCATATCTTGGAACTGCCG+AGG + chr1.1:26392244-26392263 MS.gene65474:intron 45.0%
ATCTTCTTCTGGTGCTTGAG+AGG - chr1.1:26391552-26391571 None:intergenic 45.0%
ATGTGTGCTCATCTCTTCGT+GGG - chr1.1:26393385-26393404 None:intergenic 45.0%
ATTCAATGCCTCATCATGGG+GGG - chr1.1:26391973-26391992 None:intergenic 45.0%
CAATGAGATTACCAAGCTCC+TGG - chr1.1:26391443-26391462 None:intergenic 45.0%
CAGAAGAAGATCAAACGTCC+AGG + chr1.1:26391561-26391580 MS.gene65474:CDS 45.0%
CATTCAATGCCTCATCATGG+GGG - chr1.1:26391974-26391993 None:intergenic 45.0%
CCTCATTCAATGCCTCATCA+TGG - chr1.1:26391977-26391996 None:intergenic 45.0%
CCTTAACATTTCCAAGGCCT+CGG - chr1.1:26392264-26392283 None:intergenic 45.0%
CCTTGTCCGTGTCTATAAAC+CGG + chr1.1:26392303-26392322 MS.gene65474:intron 45.0%
CTCATCATCTTCGTCACTCA+GGG - chr1.1:26391055-26391074 None:intergenic 45.0%
CTGGACGTTTGATCTTCTTC+TGG - chr1.1:26391563-26391582 None:intergenic 45.0%
CTTTCAGTCATGAAGCCTGT+TGG - chr1.1:26391414-26391433 None:intergenic 45.0%
GAGTTTGCAACGTTGCTTGT+GGG - chr1.1:26392867-26392886 None:intergenic 45.0%
GGAAGCCGTAAAAAGCAGTT+AGG - chr1.1:26392543-26392562 None:intergenic 45.0%
GGAGGACATCAAGAATCAGA+AGG - chr1.1:26391323-26391342 None:intergenic 45.0%
GGCTTCATGACTGAAAGAGT+AGG + chr1.1:26391417-26391436 MS.gene65474:CDS 45.0%
GGTAAGAAATCGCCCTACAA+GGG - chr1.1:26391130-26391149 None:intergenic 45.0%
GTATCCCCGAATAGGTTTGT+TGG - chr1.1:26391151-26391170 None:intergenic 45.0%
GTCATCATGTATCCCCGAAT+AGG - chr1.1:26391159-26391178 None:intergenic 45.0%
TCAGAATGCGCTGCATATCA+CGG - chr1.1:26391272-26391291 None:intergenic 45.0%
TCCAAAAGTTGCGAACCTTC+AGG - chr1.1:26393180-26393199 None:intergenic 45.0%
TCTGATTCTTGATGTCCTCC+CGG + chr1.1:26391323-26391342 MS.gene65474:CDS 45.0%
TGCCGATAAAAAATGACCGG+TGG - chr1.1:26392189-26392208 None:intergenic 45.0%
TGGTAAGAAATCGCCCTACA+AGG - chr1.1:26391131-26391150 None:intergenic 45.0%
TGGTTAGGGATATCATCGGT+TGG - chr1.1:26391087-26391106 None:intergenic 45.0%
TTGACAACATGAGCCAGATC+AGG - chr1.1:26392997-26393016 None:intergenic 45.0%
TTGGCTATTGGAACCTGATC+TGG + chr1.1:26392981-26393000 MS.gene65474:CDS 45.0%
! ACAATTCTTGTTTCCCCACC+TGG - chr1.1:26391582-26391601 None:intergenic 45.0%
! ATGCAGCGCATTCTGAAGAA+GGG + chr1.1:26391276-26391295 MS.gene65474:CDS 45.0%
! ATTTTTCTTGCGACGTGCAG+TGG - chr1.1:26393319-26393338 None:intergenic 45.0%
! CAGGAGCTTGGTAATCTCAT+TGG + chr1.1:26391441-26391460 MS.gene65474:CDS 45.0%
! CATTCCTTGGTGCGTAATAG+GGG + chr1.1:26392624-26392643 MS.gene65474:intron 45.0%
! CTCTCCATTCAGTACCCTTT+TGG + chr1.1:26391370-26391389 MS.gene65474:CDS 45.0%
! GCTCGATAGAGCTTTGTGTA+CGG + chr1.1:26392822-26392841 MS.gene65474:intron 45.0%
! TATGCAGCGCATTCTGAAGA+AGG + chr1.1:26391275-26391294 MS.gene65474:CDS 45.0%
! TTTTACGGCTTCCCTGATTC+TGG + chr1.1:26392550-26392569 MS.gene65474:intron 45.0%
!! CAAAAGGGTACTGAATGGAG+AGG - chr1.1:26391372-26391391 None:intergenic 45.0%
!! CCATGATGAGGCATTGAATG+AGG + chr1.1:26391974-26391993 MS.gene65474:CDS 45.0%
!! CGAGTTTTTGTTGTCTGGAC+TGG - chr1.1:26392162-26392181 None:intergenic 45.0%
!! CTGCTGTCAATGGATTGGTT+AGG - chr1.1:26391102-26391121 None:intergenic 45.0%
!!! CATTTTTTATCGGCAGAGCC+TGG + chr1.1:26392194-26392213 MS.gene65474:intron 45.0%
!!! TGGCGCCTAACTGCTTTTTA+CGG + chr1.1:26392535-26392554 MS.gene65474:intron 45.0%
AAGGGAACAGCTGCTGTCAA+TGG - chr1.1:26391112-26391131 None:intergenic 50.0%
ACAGCAGCTGTTCCCTTGTA+GGG + chr1.1:26391115-26391134 MS.gene65474:CDS 50.0%
ACCAAACTGCGGCATCCAAA+TGG + chr1.1:26393345-26393364 MS.gene65474:CDS 50.0%
AGGTGTGAGTAGCATTCTGG+TGG - chr1.1:26392091-26392110 None:intergenic 50.0%
ATAGGCGTGTGGTCAGACAT+AGG - chr1.1:26392898-26392917 None:intergenic 50.0%
ATGACGATGGTGTTCGCCAT+TGG + chr1.1:26391697-26391716 MS.gene65474:CDS 50.0%
ATGCAGGAAGACGATCGAAG+TGG + chr1.1:26391751-26391770 MS.gene65474:CDS 50.0%
ATGGAGAGGGACATGCTTAG+GGG - chr1.1:26391358-26391377 None:intergenic 50.0%
CAAACTGCGGCATCCAAATG+GGG + chr1.1:26393347-26393366 MS.gene65474:CDS 50.0%
CATCTTCGTCACTCAGGGAA+AGG - chr1.1:26391050-26391069 None:intergenic 50.0%
CATGACTGAAAGAGTAGGCC+AGG + chr1.1:26391422-26391441 MS.gene65474:CDS 50.0%
CATGTGTGCTCATCTCTTCG+TGG - chr1.1:26393386-26393405 None:intergenic 50.0%
CCAAACTGCGGCATCCAAAT+GGG + chr1.1:26393346-26393365 MS.gene65474:CDS 50.0%
CCGAGGCCTTGGAAATGTTA+AGG + chr1.1:26392261-26392280 MS.gene65474:intron 50.0%
CCGGTTTATAGACACGGACA+AGG - chr1.1:26392306-26392325 None:intergenic 50.0%
CGGAGCTTGAAACACAAGTC+TGG - chr1.1:26393476-26393495 None:intergenic 50.0%
GAAGATCAAACGTCCAGGTG+GGG + chr1.1:26391566-26391585 MS.gene65474:CDS 50.0%
GAATGCTACTCACACCTTCC+AGG + chr1.1:26392094-26392113 MS.gene65474:CDS 50.0%
GAATGGAGAGGGACATGCTT+AGG - chr1.1:26391360-26391379 None:intergenic 50.0%
GCAGGTGCAGACATCAGTAA+CGG + chr1.1:26391831-26391850 MS.gene65474:CDS 50.0%
GTGGATAGGCAGAGAAATGC+AGG + chr1.1:26391735-26391754 MS.gene65474:CDS 50.0%
TCACTGGCAGATAAGAGAGG+AGG + chr1.1:26392664-26392683 MS.gene65474:intron 50.0%
TCTACAGTCCACACCTATGC+AGG + chr1.1:26392127-26392146 MS.gene65474:CDS 50.0%
TGAAAGCCTCTGATGAGCCA+GGG - chr1.1:26392703-26392722 None:intergenic 50.0%
TGACGATGGTGTTCGCCATT+GGG + chr1.1:26391698-26391717 MS.gene65474:CDS 50.0%
TGGTAGACGTCGCGAATCTT+GGG + chr1.1:26392570-26392589 MS.gene65474:intron 50.0%
TTGAAAGCCTCTGATGAGCC+AGG - chr1.1:26392704-26392723 None:intergenic 50.0%
! GAGCTTTGTGTACGGTTCCT+TGG + chr1.1:26392830-26392849 MS.gene65474:intron 50.0%
! GCCTGAAGGTTCGCAACTTT+TGG + chr1.1:26393176-26393195 MS.gene65474:CDS 50.0%
! GGAAGGTGTGAGTAGCATTC+TGG - chr1.1:26392094-26392113 None:intergenic 50.0%
! TGCAGCGCATTCTGAAGAAG+GGG + chr1.1:26391277-26391296 MS.gene65474:CDS 50.0%
! TGCTTAGGGGACGTGTTTTC+CGG - chr1.1:26391345-26391364 None:intergenic 50.0%
!! AGGTTGGCCGTTTCTGAAGT+TGG - chr1.1:26391879-26391898 None:intergenic 50.0%
!! ATCGCTGAGTTTTGGCATCC+TGG + chr1.1:26391186-26391205 MS.gene65474:CDS 50.0%
!! CGGACAAGGTCTTTGAGACA+CGG - chr1.1:26392292-26392311 None:intergenic 50.0%
!! GAGTTTTGGCATCCTGGTAG+AGG + chr1.1:26391192-26391211 MS.gene65474:CDS 50.0%
!! GCACCCAAAAGGGTACTGAA+TGG - chr1.1:26391377-26391396 None:intergenic 50.0%
!! GGTTGGCCGTTTCTGAAGTT+GGG - chr1.1:26391878-26391897 None:intergenic 50.0%
!! GTTGGCCGTTTCTGAAGTTG+GGG - chr1.1:26391877-26391896 None:intergenic 50.0%
AAAGCCTCTGATGAGCCAGG+GGG - chr1.1:26392701-26392720 None:intergenic 55.0%
ACGATCGAAGTGGCTGAGAG+AGG + chr1.1:26391761-26391780 MS.gene65474:CDS 55.0%
ACGATGGTGTTCGCCATTGG+GGG + chr1.1:26391700-26391719 MS.gene65474:CDS 55.0%
AGCAATACCTCCGCTTCTCC+CGG - chr1.1:26392425-26392444 None:intergenic 55.0%
AGTCCACACCTATGCAGGTC+GGG + chr1.1:26392132-26392151 MS.gene65474:CDS 55.0%
AGTTCGTTCCCTGAGCCTGA+AGG + chr1.1:26393162-26393181 MS.gene65474:CDS 55.0%
AGTTGCGAACCTTCAGGCTC+AGG - chr1.1:26393174-26393193 None:intergenic 55.0%
ATCGAAGTGGCTGAGAGAGG+AGG + chr1.1:26391764-26391783 MS.gene65474:CDS 55.0%
CAGTCCACACCTATGCAGGT+CGG + chr1.1:26392131-26392150 MS.gene65474:CDS 55.0%
CCCATTTGGATGCCGCAGTT+TGG - chr1.1:26393349-26393368 None:intergenic 55.0%
CGCGACGTCTACCAGAATCA+GGG - chr1.1:26392564-26392583 None:intergenic 55.0%
CTGGTAGACGTCGCGAATCT+TGG + chr1.1:26392569-26392588 MS.gene65474:intron 55.0%
GAAAGAGTAGGCCAGGAGCT+TGG + chr1.1:26391429-26391448 MS.gene65474:CDS 55.0%
GAAAGCCTCTGATGAGCCAG+GGG - chr1.1:26392702-26392721 None:intergenic 55.0%
GAAGTGAGCCAGACCCCATT+TGG - chr1.1:26393363-26393382 None:intergenic 55.0%
GACAGCAGCTGTTCCCTTGT+AGG + chr1.1:26391114-26391133 MS.gene65474:CDS 55.0%
GACGATGGTGTTCGCCATTG+GGG + chr1.1:26391699-26391718 MS.gene65474:CDS 55.0%
GCTGAAGCATGATAGGCGTG+TGG - chr1.1:26392909-26392928 None:intergenic 55.0%
GGGGATGCTGCATTCAATGC+TGG - chr1.1:26391858-26391877 None:intergenic 55.0%
GTTGCGAACCTTCAGGCTCA+GGG - chr1.1:26393173-26393192 None:intergenic 55.0%
TCGAAGTGGCTGAGAGAGGA+GGG + chr1.1:26391765-26391784 MS.gene65474:CDS 55.0%
TCGCGACGTCTACCAGAATC+AGG - chr1.1:26392565-26392584 None:intergenic 55.0%
TGATATTCATGGCTCCCGGC+AGG - chr1.1:26392228-26392247 None:intergenic 55.0%
TGCCTATCCACACGCAACTC+TGG - chr1.1:26391726-26391745 None:intergenic 55.0%
TGCGCTGCATATCACGGTAG+TGG - chr1.1:26391266-26391285 None:intergenic 55.0%
TGCTATTACTGCGGCACCCT+GGG + chr1.1:26391633-26391652 MS.gene65474:CDS 55.0%
! GCTTAGGGGACGTGTTTTCC+GGG - chr1.1:26391344-26391363 None:intergenic 55.0%
!! GAGAACTGAGATAGCGGAGC+AGG - chr1.1:26392597-26392616 None:intergenic 55.0%
CTGCTATTACTGCGGCACCC+TGG + chr1.1:26391632-26391651 MS.gene65474:CDS 60.0%
GCGCACGCAGCTGCTGAATA+CGG - chr1.1:26393125-26393144 None:intergenic 60.0%
GGCCAGAGTTGCGTGTGGAT+AGG + chr1.1:26391721-26391740 MS.gene65474:CDS 60.0%
TCTTGGAACTGCCGAGGCCT+TGG + chr1.1:26392250-26392269 MS.gene65474:intron 60.0%
TGAGAGAGGAGGGCCAAGAG+TGG + chr1.1:26391775-26391794 MS.gene65474:CDS 60.0%
TGCACCTGCAGAGCCGTTTC+CGG - chr1.1:26391820-26391839 None:intergenic 60.0%
TGCGGCATCCAAATGGGGTC+TGG + chr1.1:26393352-26393371 MS.gene65474:CDS 60.0%
! GCATTCTGAAGAAGGGGCCG+TGG + chr1.1:26391283-26391302 MS.gene65474:CDS 60.0%
! GTGGACTGTACCGGGAGAAG+CGG + chr1.1:26392412-26392431 MS.gene65474:intron 60.0%
! TAGGGGACGTGTTTTCCGGG+AGG - chr1.1:26391341-26391360 None:intergenic 60.0%
!! GCGGAGGTATTGCTGTCCTC+TGG + chr1.1:26392431-26392450 MS.gene65474:intron 60.0%
AGAGTGGTCGCCACCGTCAG+AGG + chr1.1:26391791-26391810 MS.gene65474:CDS 65.0%
ATCGGCAGAGCCTGGCTTCC+AGG + chr1.1:26392202-26392221 MS.gene65474:intron 65.0%
CACGCAACTCTGGCCCCCAA+TGG - chr1.1:26391716-26391735 None:intergenic 65.0%
CCGTCAGAGGCTGCCGGAAA+CGG + chr1.1:26391804-26391823 MS.gene65474:CDS 65.0%
CCGTTTCCGGCAGCCTCTGA+CGG - chr1.1:26391807-26391826 None:intergenic 65.0%
CTCTGATGAGCCAGGGGGCA+CGG - chr1.1:26392696-26392715 None:intergenic 65.0%
CTGACGGTGGCGACCACTCT+TGG - chr1.1:26391791-26391810 None:intergenic 65.0%
CTGGTGTGCCCGACCTGCAT+AGG - chr1.1:26392143-26392162 None:intergenic 65.0%
GACTGTACCGGGAGAAGCGG+AGG + chr1.1:26392415-26392434 MS.gene65474:intron 65.0%
GTGCCCGACCTGCATAGGTG+TGG - chr1.1:26392138-26392157 None:intergenic 65.0%
TTGGGGGCCAGAGTTGCGTG+TGG + chr1.1:26391716-26391735 MS.gene65474:CDS 65.0%
TTTCCGGCAGCCTCTGACGG+TGG - chr1.1:26391804-26391823 None:intergenic 65.0%
AGCCTGGCTTCCAGGCCTGC+CGG + chr1.1:26392210-26392229 MS.gene65474:intron 70.0%
CGTGCCCCCTGGCTCATCAG+AGG + chr1.1:26392694-26392713 MS.gene65474:intron 70.0%
GCTGCCGGAAACGGCTCTGC+AGG + chr1.1:26391813-26391832 MS.gene65474:CDS 70.0%
TCGCCACCGTCAGAGGCTGC+CGG + chr1.1:26391798-26391817 MS.gene65474:CDS 70.0%
TTCATGGCTCCCGGCAGGCC+TGG - chr1.1:26392223-26392242 None:intergenic 70.0%
! ATGAGCCAGGGGGCACGGTC+AGG - chr1.1:26392691-26392710 None:intergenic 70.0%
GAGGACCTGACCGTGCCCCC+TGG + chr1.1:26392683-26392702 MS.gene65474:intron 75.0%
GCCTGGCTTCCAGGCCTGCC+GGG + chr1.1:26392211-26392230 MS.gene65474:intron 75.0%
TCCCGGCAGGCCTGGAAGCC+AGG - chr1.1:26392215-26392234 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 26391030 26393503 26391030 ID=MS.gene65474
chr1.1 mRNA 26391030 26393503 26391030 ID=MS.gene65474.t1;Parent=MS.gene65474
chr1.1 exon 26391030 26392191 26391030 ID=MS.gene65474.t1.exon1;Parent=MS.gene65474.t1
chr1.1 CDS 26391030 26392191 26391030 ID=cds.MS.gene65474.t1;Parent=MS.gene65474.t1
chr1.1 exon 26392857 26393503 26392857 ID=MS.gene65474.t1.exon2;Parent=MS.gene65474.t1
chr1.1 CDS 26392857 26393503 26392857 ID=cds.MS.gene65474.t1;Parent=MS.gene65474.t1
Gene Sequence

>MS.gene65474

ATGGCTTCCATATCAAACCTTTCCCTGAGTGACGAAGATGATGAGTTAGAAATACCAACCGATGATATCCCTAACCAATCCATTGACAGCAGCTGTTCCCTTGTAGGGCGATTTCTTACCAACAAACCTATTCGGGGATACATGATGACGGAAATTATCGCTGAGTTTTGGCATCCTGGTAGAGGAGTTGATATCAAAGAGACAGAGCCAAACCTTTTCACATTCAAGTTCTTCCACTACCGTGATATGCAGCGCATTCTGAAGAAGGGGCCGTGGTATTTCGATAATCACCTTCTGATTCTTGATGTCCTCCCGGAAAACACGTCCCCTAAGCATGTCCCTCTCCATTCAGTACCCTTTTGGGTGCAAATTCATGACATTCCAACAGGCTTCATGACTGAAAGAGTAGGCCAGGAGCTTGGTAATCTCATTGGTGACTTCCTGGAATATGATGTCAAAAATAAGTCCAATCATCTCAGGTCTTATATGCGAATTCGTGTGCTCATCGATGTCACTAAACCTCTCAAGCACCAGAAGAAGATCAAACGTCCAGGTGGGGAAACAAGAATTGTGAAATTCAAATATGAGAGATTGGGAAATTTCTGCTATTACTGCGGCACCCTGGGACACATTGAAGATTACTGTGACAAGCTCTATTCTGTTACAGATGACGATGGTGTTCGCCATTGGGGGCCAGAGTTGCGTGTGGATAGGCAGAGAAATGCAGGAAGACGATCGAAGTGGCTGAGAGAGGAGGGCCAAGAGTGGTCGCCACCGTCAGAGGCTGCCGGAAACGGCTCTGCAGGTGCAGACATCAGTAACGGTCCAGCATTGAATGCAGCATCCCCAACTTCAGAAACGGCCAACCTGATTAATTTGCTTAAAAATCCACATTTATTGCGCCCATCAAAGAGCAATGAATTTTCAGGTACAACAAAATCCCCCCATGATGAGGCATTGAATGAGGAAAATGTGGAAGCTGTGATTACAACAAATGCAAAACGGTCCAGAGCTGAATTTAATGATAATGATATGAGTGCTGACTCATCAGTGAAATGCCACCAGAATGCTACTCACACCTTCCAGGAGAACAACAATCTACAGTCCACACCTATGCAGGTCGGGCACACCAGTCCAGACAACAAAAACTCGTCTACCACCGGTCATTTTTTATCGGCAGAGCCTGGCTTCCAGGCCTGCCGGGAGCCATGAATATCATATCTTGGAACTGCCGAGGCCTTGGAAATGTTAAGGCAGTTCCGTGTCTCAAAGACCTTGTCCGTGTCTATAAACCGGATATTCTTATCCTTATTGAAACTTTATGCAATGATAATAAAATCTCTAGTTTGCGTTATTCCATTGGCTTTGATCACTATTTTTCTGTGGACTGTACCGGGAGAAGCGGAGGTATTGCTGTCCTCTGGAATACTTCTGCAAATTGCTCTATACTTAATTATTCTCAAAATTTCGTCAATTTGTCCATTCAAGACTCTATTAAAGGTGAATGGCGCCTAACTGCTTTTTACGGCTTCCCTGATTCTGGTAGACGTCGCGAATCTTGGGACCTGCTCCGCTATCTCAGTTCTCTGTCAAACATTCCTTGGTGCGTAATAGGGGATTTCAATGATCATTTATCACTGGCAGATAAGAGAGGAGGACCTGACCGTGCCCCCTGGCTCATCAGAGGCTTTCAAGATGCTGTGAATGATTGTGGTCTCTATGATCTTCCACTATTGGGGTATCAATTCACATGGTTCAAAAGTATCGGTACTAATGACTCGAAGAAAGCTCGGCTCGATAGAGCTTTGTGTACGGTTCCTTGGCAAGATATATTCCCACAAGCAACGTTGCAAACTCTTGTTGCTCCTATGTCTGACCACACGCCTATCATGCTTCAGCTTGAACAAAATAATTGGCGCTCCCCTTATAAAAGTTTCCGTTTTAACAACTCTTGGCTATTGGAACCTGATCTGGCTCATGTTGTCAAAGAAAATTGGAGCTATTATCCGTCCAATAACATTGTAACCAAACTGAGCTACTGTATTGAGGATATAAAATCCTGGACTAAGTCTAACCATCCTCATTTTCATAGCCGTATTCAGCAGCTGCGTGCGCGCATTGAAGAATCACGCAGTTCGTTCCCTGAGCCTGAAGGTTCGCAACTTTTGGAGCTTCAAAAAGAATTTGCCAATTTACTGCTTCAAGAAGAAAGTTACTGGAGACAACGTTCGAAAGTTTTTTGGTTGAGAGATGGAGACACGAACAGCAAATTTTTTCATGCTCAAGCCACTGCACGTCGCAAGAAAAATACTATCACCAAACTGCGGCATCCAAATGGGGTCTGGCTCACTTCCCACGAAGAGATGAGCACACATGTTTACGATTATTTCTCGACTATTTTTCAGGCTGTTCAAGGGGATCACAGTGTTGTTACATCTCACATCCAGACTTGTGTTTCAAGCTCCGATAACTAG
Protein sequence

>MS.gene65474.t1

MASISNLSLSDEDDELEIPTDDIPNQSIDSSCSLVGRFLTNKPIRGYMMTEIIAEFWHPGRGVDIKETEPNLFTFKFFHYRDMQRILKKGPWYFDNHLLILDVLPENTSPKHVPLHSVPFWVQIHDIPTGFMTERVGQELGNLIGDFLEYDVKNKSNHLRSYMRIRVLIDVTKPLKHQKKIKRPGGETRIVKFKYERLGNFCYYCGTLGHIEDYCDKLYSVTDDDGVRHWGPELRVDRQRNAGRRSKWLREEGQEWSPPSEAAGNGSAGADISNGPALNAASPTSETANLINLLKNPHLLRPSKSNEFSGTTKSPHDEALNEENVEAVITTNAKRSRAEFNDNDMSADSSVKCHQNATHTFQENNNLQSTPMQVGHTSPDNKNSSTTDIFPQATLQTLVAPMSDHTPIMLQLEQNNWRSPYKSFRFNNSWLLEPDLAHVVKENWSYYPSNNIVTKLSYCIEDIKSWTKSNHPHFHSRIQQLRARIEESRSSFPEPEGSQLLELQKEFANLLLQEESYWRQRSKVFWLRDGDTNSKFFHAQATARRKKNTITKLRHPNGVWLTSHEEMSTHVYDYFSTIFQAVQGDHSVVTSHIQTCVSSSDN