Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015093.t1 | XP_024630779.1 | 63.5 | 386 | 99 | 3 | 1 | 345 | 1 | 385 | 6.70E-125 | 457.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015093.t1 | A0A396JIW9 | 53.4 | 397 | 119 | 10 | 1 | 345 | 1 | 383 | 2.6e-94 | 355.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015093.t1 | MTR_0010s0370 | 58.470 | 183 | 41 | 1 | 1 | 148 | 1 | 183 | 2.61e-65 | 205 |
| MS.gene015093.t1 | MTR_0010s0350 | 58.470 | 183 | 41 | 1 | 1 | 148 | 1 | 183 | 2.61e-65 | 205 |
| MS.gene015093.t1 | MTR_1g036710 | 44.615 | 195 | 69 | 3 | 97 | 287 | 1 | 160 | 3.83e-43 | 151 |
| MS.gene015093.t1 | MTR_1g036720 | 71.429 | 70 | 20 | 0 | 1 | 70 | 1 | 70 | 1.68e-30 | 112 |
| MS.gene015093.t1 | MTR_7g089990 | 48.544 | 103 | 51 | 1 | 74 | 174 | 91 | 193 | 7.69e-21 | 89.7 |
| MS.gene015093.t1 | MTR_1g051330 | 45.217 | 115 | 51 | 4 | 203 | 310 | 14 | 123 | 3.95e-16 | 80.1 |
| MS.gene015093.t1 | MTR_6g053230 | 34.167 | 120 | 78 | 1 | 32 | 151 | 51 | 169 | 5.95e-16 | 79.0 |
| MS.gene015093.t1 | MTR_6g033215 | 23.333 | 180 | 101 | 2 | 20 | 164 | 117 | 294 | 7.75e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015093.t1 | AT3G31430 | 32.323 | 99 | 67 | 0 | 82 | 180 | 213 | 311 | 3.96e-14 | 72.8 |
| MS.gene015093.t1 | AT2G41590 | 31.852 | 135 | 85 | 2 | 48 | 180 | 89 | 218 | 6.24e-14 | 72.4 |
| MS.gene015093.t1 | AT2G17920 | 33.673 | 98 | 65 | 0 | 83 | 180 | 121 | 218 | 3.13e-13 | 70.1 |
| MS.gene015093.t1 | AT5G36225 | 33.333 | 90 | 60 | 0 | 86 | 175 | 17 | 106 | 3.35e-13 | 68.9 |
| MS.gene015093.t1 | AT3G47920 | 33.673 | 98 | 65 | 0 | 83 | 180 | 50 | 147 | 6.92e-13 | 68.9 |
| MS.gene015093.t1 | AT5G18636 | 29.630 | 135 | 88 | 2 | 48 | 180 | 89 | 218 | 1.32e-12 | 68.6 |
| MS.gene015093.t1 | AT5G25200 | 29.630 | 135 | 88 | 2 | 48 | 180 | 89 | 218 | 1.38e-12 | 68.6 |
| MS.gene015093.t1 | AT2G02103 | 29.825 | 114 | 75 | 1 | 67 | 180 | 110 | 218 | 4.94e-12 | 67.0 |
| MS.gene015093.t1 | AT5G36228 | 27.586 | 116 | 84 | 0 | 75 | 190 | 113 | 228 | 3.78e-11 | 63.9 |
| MS.gene015093.t1 | AT4G02000 | 30.275 | 109 | 71 | 1 | 77 | 180 | 30 | 138 | 4.77e-11 | 63.5 |
| MS.gene015093.t1 | AT2G13450 | 30.275 | 109 | 71 | 1 | 77 | 180 | 110 | 218 | 4.83e-11 | 63.9 |
Find 75 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAAGATTGAAACCTTT+TGG | 0.241030 | 3.2:+85359025 | MS.gene015093:CDS |
| ACCTCCGATTTGTGCCGTTT+TGG | 0.245531 | 3.2:+85359216 | MS.gene015093:CDS |
| TCAACTGCGGATTCCGTAAC+AGG | 0.251427 | 3.2:-85359706 | None:intergenic |
| CTGGTTCTACCTCTTGAATT+TGG | 0.260958 | 3.2:-85359065 | None:intergenic |
| GTTTGCTAAGTTGGCAGATT+TGG | 0.282991 | 3.2:-85359684 | None:intergenic |
| GAGATAATTCGAGTTGTTCT+TGG | 0.302396 | 3.2:-85359330 | None:intergenic |
| GACCCTCACCTCCGTCTTGT+TGG | 0.361586 | 3.2:+85358961 | MS.gene015093:CDS |
| AATTCATTCTGAGTTGTTAC+AGG | 0.367813 | 3.2:+85359778 | MS.gene015093:CDS |
| CCGTAACAGGTTTGCTAAGT+TGG | 0.374230 | 3.2:-85359693 | None:intergenic |
| AAGGAAATTGCAAACTTCAT+TGG | 0.378123 | 3.2:+85359287 | MS.gene015093:CDS |
| AACTGTTAAACCTTTGCTGC+TGG | 0.402633 | 3.2:-85359642 | None:intergenic |
| TTATTTCAAATAAACCAAAA+AGG | 0.408379 | 3.2:+85359819 | MS.gene015093:CDS |
| CTGATGATGGAACAAGACTA+TGG | 0.442111 | 3.2:+85359543 | MS.gene015093:CDS |
| TTGTGAAAAGCTTTATTCCA+TGG | 0.453343 | 3.2:+85359517 | MS.gene015093:CDS |
| TGAATTTGGACACCTTTGAC+AGG | 0.462471 | 3.2:-85359051 | None:intergenic |
| CCAACTTAGCAAACCTGTTA+CGG | 0.462585 | 3.2:+85359693 | MS.gene015093:CDS |
| TTTGCATTGTTTGTGATAGT+AGG | 0.464570 | 3.2:-85359902 | None:intergenic |
| TTGGCCGCTTCCTCACTAAC+CGG | 0.476388 | 3.2:+85358980 | MS.gene015093:CDS |
| AATCGGAGGTTTACCTGGCT+TGG | 0.482215 | 3.2:-85359203 | None:intergenic |
| CCGCCCAGTCAATAATGATC+AGG | 0.484767 | 3.2:+85359733 | MS.gene015093:CDS |
| TATTCCATGGAATCTGATGA+TGG | 0.485852 | 3.2:+85359530 | MS.gene015093:CDS |
| GAACCCAAAACGGCACAAAT+CGG | 0.492588 | 3.2:-85359220 | None:intergenic |
| GTTTGTGCAGGTATGTCATC+TGG | 0.494479 | 3.2:-85358934 | None:intergenic |
| TGGTTTACTCGGTCATATTG+AGG | 0.496082 | 3.2:+85359490 | MS.gene015093:CDS |
| GCACAAATCGGAGGTTTACC+TGG | 0.502212 | 3.2:-85359208 | None:intergenic |
| AGAAAATGGTGTGCCAAGCC+AGG | 0.504282 | 3.2:+85359190 | MS.gene015093:intron |
| TGTTCCATCATCAGATTCCA+TGG | 0.504402 | 3.2:-85359534 | None:intergenic |
| CAAGTGCACGACATTCCAAC+AGG | 0.508949 | 3.2:+85359242 | MS.gene015093:CDS |
| TCGTGCACTTGAACCCAAAA+CGG | 0.510201 | 3.2:-85359230 | None:intergenic |
| TGAGGGTCTGTGGTTTGTGC+AGG | 0.512257 | 3.2:-85358946 | None:intergenic |
| ACCTTTGACAGGATTCCAAA+AGG | 0.514050 | 3.2:-85359040 | None:intergenic |
| CTGCCTGATCATTATTGACT+GGG | 0.521774 | 3.2:-85359736 | None:intergenic |
| TGTTCTTGGCGTCATATTCG+AGG | 0.521779 | 3.2:-85359316 | None:intergenic |
| TATGAAGATCAGAGTCCTGA+TGG | 0.526288 | 3.2:+85359361 | MS.gene015093:CDS |
| GTGGCTTAGTAACATCCATC+AGG | 0.529918 | 3.2:-85359376 | None:intergenic |
| ATCATCATGTAGGATCGTAT+TGG | 0.531587 | 3.2:-85359003 | None:intergenic |
| GGAGCCAAGCATTATTGAAA+CGG | 0.534511 | 3.2:-85360797 | None:intergenic |
| CAAATTCAAGAGGTAGAACC+AGG | 0.536479 | 3.2:+85359066 | MS.gene015093:CDS |
| CACTCAACGAGAGATGATGA+AGG | 0.539546 | 3.2:-85358885 | None:intergenic |
| AATACGATCCTACATGATGA+TGG | 0.539617 | 3.2:+85359005 | MS.gene015093:CDS |
| ACTGCCTGATCATTATTGAC+TGG | 0.541366 | 3.2:-85359737 | None:intergenic |
| TAGTAGGAATTGATGAGTGC+TGG | 0.545116 | 3.2:-85359886 | None:intergenic |
| GTTACAGTTTCCAGCAGCAA+AGG | 0.545564 | 3.2:+85359632 | MS.gene015093:CDS |
| CGATTCAAGTACGAGCGGCT+AGG | 0.549014 | 3.2:+85359449 | MS.gene015093:CDS |
| ATGTAGCTGCATTCACCTCC+CGG | 0.549990 | 3.2:-85359425 | None:intergenic |
| CTGGAAACTGTAACTGTCAC+CGG | 0.551548 | 3.2:-85359623 | None:intergenic |
| TGACACCTTTGAGACATCCA+TGG | 0.555787 | 3.2:-85359999 | None:intergenic |
| GGCCAACAAGACGGAGGTGA+GGG | 0.558506 | 3.2:-85358963 | None:intergenic |
| TCACCGGTGGTTCTTGCTGC+CGG | 0.563528 | 3.2:-85359607 | None:intergenic |
| GACACCTTTGAGACATCCAT+GGG | 0.570426 | 3.2:-85359998 | None:intergenic |
| CGGCCAACAAGACGGAGGTG+AGG | 0.572004 | 3.2:-85358964 | None:intergenic |
| AAGACGGAGGTGAGGGTCTG+TGG | 0.573089 | 3.2:-85358956 | None:intergenic |
| CAATGACTCAACGACTCCCA+TGG | 0.578813 | 3.2:+85359982 | MS.gene015093:CDS |
| TTGGCCGGTTAGTGAGGAAG+CGG | 0.583738 | 3.2:-85358984 | None:intergenic |
| GGAATGGTGCGATTTGCAGT+TGG | 0.583851 | 3.2:-85359947 | None:intergenic |
| TCAGGCAGTTACAAAAGCTA+AGG | 0.585838 | 3.2:+85359751 | MS.gene015093:CDS |
| GACTCCCATGGATGTCTCAA+AGG | 0.589523 | 3.2:+85359994 | MS.gene015093:CDS |
| ATCGTATTGGCCGGTTAGTG+AGG | 0.590416 | 3.2:-85358990 | None:intergenic |
| TCATCTCTCGTTGAGTGAAG+AGG | 0.605479 | 3.2:+85358891 | MS.gene015093:CDS |
| ACTGGGCGGCGCATCAACTG+CGG | 0.607849 | 3.2:-85359719 | None:intergenic |
| TCATGTAGGATCGTATTGGC+CGG | 0.608829 | 3.2:-85358999 | None:intergenic |
| CTCTGATCTTCATATATGAG+CGG | 0.614510 | 3.2:-85359352 | None:intergenic |
| GTGCAGGTATGTCATCTGGT+AGG | 0.621427 | 3.2:-85358930 | None:intergenic |
| ATGGTGCGATTTGCAGTTGG+AGG | 0.622844 | 3.2:-85359944 | None:intergenic |
| CAAAGGTGTCCAAATTCAAG+AGG | 0.624142 | 3.2:+85359056 | MS.gene015093:CDS |
| TGAGGAAGCGGCCAACAAGA+CGG | 0.626222 | 3.2:-85358972 | None:intergenic |
| TCGCCGGCAGCAAGAACCAC+CGG | 0.628520 | 3.2:+85359604 | MS.gene015093:CDS |
| AAAGTCAGAGAACAACTCGC+CGG | 0.642877 | 3.2:+85359588 | MS.gene015093:CDS |
| ACTCAACGAGAGATGATGAA+GGG | 0.644189 | 3.2:-85358884 | None:intergenic |
| CCCAAAACGGCACAAATCGG+AGG | 0.645206 | 3.2:-85359217 | None:intergenic |
| TCTCTCGTTGAGTGAAGAGG+AGG | 0.649737 | 3.2:+85358894 | MS.gene015093:CDS |
| CCTGATCATTATTGACTGGG+CGG | 0.704783 | 3.2:-85359733 | None:intergenic |
| ACATTCGATTCAAGTACGAG+CGG | 0.719589 | 3.2:+85359444 | MS.gene015093:CDS |
| GAAACTGTAACTGTCACCGG+TGG | 0.726031 | 3.2:-85359620 | None:intergenic |
| GGAAGCGGCCAACAAGACGG+AGG | 0.736655 | 3.2:-85358969 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTCAAATAAACCAAAA+AGG | + | chr3.2:85359819-85359838 | MS.gene015093:CDS | 15.0% |
| !!! | TTACATTAACTTGTTAATAC+AGG | + | chr3.2:85360326-85360345 | MS.gene015093:intron | 20.0% |
| ! | AAAATGATTGTCAAAACCAA+TGG | - | chr3.2:85360220-85360239 | None:intergenic | 25.0% |
| ! | AAATAAACCAAAAAGGTCAA+GGG | + | chr3.2:85359826-85359845 | MS.gene015093:CDS | 25.0% |
| ! | CAGAAATGAATGTTATATCT+TGG | + | chr3.2:85360064-85360083 | MS.gene015093:intron | 25.0% |
| ! | TCAAAAAAAGATAAAGAAGC+CGG | + | chr3.2:85359406-85359425 | MS.gene015093:CDS | 25.0% |
| ! | TCAATAAGAATTACAATGTC+CGG | - | chr3.2:85360156-85360175 | None:intergenic | 25.0% |
| ! | TTATTGGATATCAATTCACT+TGG | + | chr3.2:85360592-85360611 | MS.gene015093:intron | 25.0% |
| !!! | TGGTTTTGACAATCATTTTT+CGG | + | chr3.2:85360221-85360240 | MS.gene015093:intron | 25.0% |
| AAGAAGATGTAATTAGAGCA+CGG | - | chr3.2:85360662-85360681 | None:intergenic | 30.0% | |
| AAGGAAATTGCAAACTTCAT+TGG | + | chr3.2:85359287-85359306 | MS.gene015093:CDS | 30.0% | |
| AATAAACCAAAAAGGTCAAG+GGG | + | chr3.2:85359827-85359846 | MS.gene015093:CDS | 30.0% | |
| AATTCATTCTGAGTTGTTAC+AGG | + | chr3.2:85359778-85359797 | MS.gene015093:CDS | 30.0% | |
| AATTGAAACGTATATAGACC+TGG | - | chr3.2:85359087-85359106 | None:intergenic | 30.0% | |
| CAAAAAAAGATAAAGAAGCC+GGG | + | chr3.2:85359407-85359426 | MS.gene015093:CDS | 30.0% | |
| CAAATAAACCAAAAAGGTCA+AGG | + | chr3.2:85359825-85359844 | MS.gene015093:CDS | 30.0% | |
| CTTATTGAAACACTAGTTCA+TGG | + | chr3.2:85360168-85360187 | MS.gene015093:intron | 30.0% | |
| GATATAACATTCATTTCTGC+TGG | - | chr3.2:85360063-85360082 | None:intergenic | 30.0% | |
| GTCTTATGTCAGAAAAAGTA+GGG | + | chr3.2:85359264-85359283 | MS.gene015093:CDS | 30.0% | |
| GTGAATTGATATCCAATAAG+AGG | - | chr3.2:85360591-85360610 | None:intergenic | 30.0% | |
| TTTGCATTGTTTGTGATAGT+AGG | - | chr3.2:85359905-85359924 | None:intergenic | 30.0% | |
| ! | AATCTTTTCCATCATCATGT+AGG | - | chr3.2:85359016-85359035 | None:intergenic | 30.0% |
| ! | TGGAAAAGATTGAAACCTTT+TGG | + | chr3.2:85359025-85359044 | MS.gene015093:CDS | 30.0% |
| ! | TTCACTTGGTTCAAAAGTAT+TGG | + | chr3.2:85360606-85360625 | MS.gene015093:intron | 30.0% |
| !! | TTGTGAAAAGCTTTATTCCA+TGG | + | chr3.2:85359517-85359536 | MS.gene015093:CDS | 30.0% |
| AAATCACCAATTATGCACCA+AGG | - | chr3.2:85360462-85360481 | None:intergenic | 35.0% | |
| AATACGATCCTACATGATGA+TGG | + | chr3.2:85359005-85359024 | MS.gene015093:CDS | 35.0% | |
| AGATGGTTATCGAAATACCA+TGG | - | chr3.2:85359149-85359168 | None:intergenic | 35.0% | |
| ATCATCATGTAGGATCGTAT+TGG | - | chr3.2:85359006-85359025 | None:intergenic | 35.0% | |
| CTCTGATCTTCATATATGAG+CGG | - | chr3.2:85359355-85359374 | None:intergenic | 35.0% | |
| GTGCTCTAATTACATCTTCT+TGG | + | chr3.2:85360661-85360680 | MS.gene015093:intron | 35.0% | |
| TATGTCAGAAAAAGTAGGGA+AGG | + | chr3.2:85359268-85359287 | MS.gene015093:CDS | 35.0% | |
| TATTCCATGGAATCTGATGA+TGG | + | chr3.2:85359530-85359549 | MS.gene015093:CDS | 35.0% | |
| TCTGATTTATGCTACACCAT+TGG | + | chr3.2:85360201-85360220 | MS.gene015093:intron | 35.0% | |
| TTAATACAGGACCCTACAAT+CGG | + | chr3.2:85360339-85360358 | MS.gene015093:intron | 35.0% | |
| TTGTTCGATATGCCTCTTAT+TGG | + | chr3.2:85360576-85360595 | MS.gene015093:intron | 35.0% | |
| ! | GGTCTTATGTCAGAAAAAGT+AGG | + | chr3.2:85359263-85359282 | MS.gene015093:CDS | 35.0% |
| ! | TTTTCTGACATAAGACCTGT+TGG | - | chr3.2:85359260-85359279 | None:intergenic | 35.0% |
| !! | ATTGTCGTTGTTTTCTGGAA+TGG | - | chr3.2:85359966-85359985 | None:intergenic | 35.0% |
| !! | CATTTTTCGGTTGATCGAAT+TGG | + | chr3.2:85360234-85360253 | MS.gene015093:intron | 35.0% |
| !! | GAGATAATTCGAGTTGTTCT+TGG | - | chr3.2:85359333-85359352 | None:intergenic | 35.0% |
| !!! | AATTGATGAGTGCTGGTTTT+CGG | - | chr3.2:85359882-85359901 | None:intergenic | 35.0% |
| !!! | ATCTTTTTTTGACGCTTCAG+TGG | - | chr3.2:85359398-85359417 | None:intergenic | 35.0% |
| !!! | GGTAATTTCTGCTACTTTTG+TGG | + | chr3.2:85359470-85359489 | MS.gene015093:CDS | 35.0% |
| !!! | GGTGTCAAGTCCTTTTTTAT+TGG | + | chr3.2:85360015-85360034 | MS.gene015093:intron | 35.0% |
| !!! | TGCTACTTTTGTGGTTTACT+CGG | + | chr3.2:85359479-85359498 | MS.gene015093:CDS | 35.0% |
| AAAAAGATAAAGAAGCCGGG+AGG | + | chr3.2:85359410-85359429 | MS.gene015093:CDS | 40.0% | |
| AAATACCATGGACCTTCTTG+AGG | - | chr3.2:85359137-85359156 | None:intergenic | 40.0% | |
| AACTGTTAAACCTTTGCTGC+TGG | - | chr3.2:85359645-85359664 | None:intergenic | 40.0% | |
| AAGCCTCTAATAAGCCATGA+AGG | - | chr3.2:85360531-85360550 | None:intergenic | 40.0% | |
| ACATTCGATTCAAGTACGAG+CGG | + | chr3.2:85359444-85359463 | MS.gene015093:CDS | 40.0% | |
| ACCTTTGACAGGATTCCAAA+AGG | - | chr3.2:85359043-85359062 | None:intergenic | 40.0% | |
| ACTCAACGAGAGATGATGAA+GGG | - | chr3.2:85358887-85358906 | None:intergenic | 40.0% | |
| ACTGCCTGATCATTATTGAC+TGG | - | chr3.2:85359740-85359759 | None:intergenic | 40.0% | |
| AGTTCCATCCATCAAAGACA+TGG | + | chr3.2:85360116-85360135 | MS.gene015093:intron | 40.0% | |
| CAAATTCAAGAGGTAGAACC+AGG | + | chr3.2:85359066-85359085 | MS.gene015093:CDS | 40.0% | |
| CAATGTCCGGTTTATAGACA+CGG | - | chr3.2:85360143-85360162 | None:intergenic | 40.0% | |
| CCAACTTAGCAAACCTGTTA+CGG | + | chr3.2:85359693-85359712 | MS.gene015093:CDS | 40.0% | |
| CTTGATGTCCTTCCAGAAAA+TGG | + | chr3.2:85359176-85359195 | MS.gene015093:intron | 40.0% | |
| GGACATCAAGGATCAAAAGA+TGG | - | chr3.2:85359166-85359185 | None:intergenic | 40.0% | |
| GTTCTATGGATACTCAGACT+CGG | + | chr3.2:85360380-85360399 | MS.gene015093:intron | 40.0% | |
| TAACATTCATTTCTGCTGGC+AGG | - | chr3.2:85360059-85360078 | None:intergenic | 40.0% | |
| TAATTAGAGCACGGTCAAGA+CGG | - | chr3.2:85360653-85360672 | None:intergenic | 40.0% | |
| TAGTAGGAATTGATGAGTGC+TGG | - | chr3.2:85359889-85359908 | None:intergenic | 40.0% | |
| TATGAAGATCAGAGTCCTGA+TGG | + | chr3.2:85359361-85359380 | MS.gene015093:CDS | 40.0% | |
| TCAGGCAGTTACAAAAGCTA+AGG | + | chr3.2:85359751-85359770 | MS.gene015093:CDS | 40.0% | |
| TGAATTTGGACACCTTTGAC+AGG | - | chr3.2:85359054-85359073 | None:intergenic | 40.0% | |
| TGGTTTACTCGGTCATATTG+AGG | + | chr3.2:85359490-85359509 | MS.gene015093:CDS | 40.0% | |
| TGTTCCATCATCAGATTCCA+TGG | - | chr3.2:85359537-85359556 | None:intergenic | 40.0% | |
| TTCAACTTGACCCTATTCCT+TGG | + | chr3.2:85360754-85360773 | MS.gene015093:intron | 40.0% | |
| TTCTATGGATACTCAGACTC+GGG | + | chr3.2:85360381-85360400 | MS.gene015093:intron | 40.0% | |
| ! | AACGATCCTTGGTGCATAAT+TGG | + | chr3.2:85360453-85360472 | MS.gene015093:intron | 40.0% |
| ! | CTGCCTGATCATTATTGACT+GGG | - | chr3.2:85359739-85359758 | None:intergenic | 40.0% |
| ! | GTTTGCTAAGTTGGCAGATT+TGG | - | chr3.2:85359687-85359706 | None:intergenic | 40.0% |
| !! | CAAAGGTGTCCAAATTCAAG+AGG | + | chr3.2:85359056-85359075 | MS.gene015093:CDS | 40.0% |
| !! | CATTTTCTGGAAGGACATCA+AGG | - | chr3.2:85359178-85359197 | None:intergenic | 40.0% |
| !! | CTGATGATGGAACAAGACTA+TGG | + | chr3.2:85359543-85359562 | MS.gene015093:CDS | 40.0% |
| !! | CTGGTTCTACCTCTTGAATT+TGG | - | chr3.2:85359068-85359087 | None:intergenic | 40.0% |
| !! | GAGTCATTGTCGTTGTTTTC+TGG | - | chr3.2:85359971-85359990 | None:intergenic | 40.0% |
| !!! | ACCTTTTGGAATCCTGTCAA+AGG | + | chr3.2:85359039-85359058 | MS.gene015093:CDS | 40.0% |
| AAAGTCAGAGAACAACTCGC+CGG | + | chr3.2:85359588-85359607 | MS.gene015093:CDS | 45.0% | |
| AATTAGAGCACGGTCAAGAC+GGG | - | chr3.2:85360652-85360671 | None:intergenic | 45.0% | |
| AATTGCGCCATAAGACAGCT+AGG | - | chr3.2:85360272-85360291 | None:intergenic | 45.0% | |
| AGAATCCTCAAGAAGGTCCA+TGG | + | chr3.2:85359129-85359148 | MS.gene015093:intron | 45.0% | |
| ATAAGCCATGAAGGACGTTC+AGG | - | chr3.2:85360522-85360541 | None:intergenic | 45.0% | |
| CACTCAACGAGAGATGATGA+AGG | - | chr3.2:85358888-85358907 | None:intergenic | 45.0% | |
| CATGGTCCGTGTCTATAAAC+CGG | + | chr3.2:85360134-85360153 | MS.gene015093:intron | 45.0% | |
| CCAGGCTCTGCCAATAAAAA+AGG | - | chr3.2:85360028-85360047 | None:intergenic | 45.0% | |
| CCTACAGAGAATCCTCAAGA+AGG | + | chr3.2:85359122-85359141 | MS.gene015093:intron | 45.0% | |
| CCTTCTTGAGGATTCTCTGT+AGG | - | chr3.2:85359125-85359144 | None:intergenic | 45.0% | |
| CGTCCTTCATGGCTTATTAG+AGG | + | chr3.2:85360525-85360544 | MS.gene015093:intron | 45.0% | |
| CTGGAAACTGTAACTGTCAC+CGG | - | chr3.2:85359626-85359645 | None:intergenic | 45.0% | |
| GAACCCAAAACGGCACAAAT+CGG | - | chr3.2:85359223-85359242 | None:intergenic | 45.0% | |
| GCAATCTCTCTAACGATCCT+TGG | + | chr3.2:85360442-85360461 | MS.gene015093:intron | 45.0% | |
| GTGGCTTAGTAACATCCATC+AGG | - | chr3.2:85359379-85359398 | None:intergenic | 45.0% | |
| GTTACAGTTTCCAGCAGCAA+AGG | + | chr3.2:85359632-85359651 | MS.gene015093:CDS | 45.0% | |
| GTTATATCTTGGAACTGCCG+CGG | + | chr3.2:85360075-85360094 | MS.gene015093:intron | 45.0% | |
| GTTGATCGAATTGGTCGAAG+CGG | + | chr3.2:85360243-85360262 | MS.gene015093:intron | 45.0% | |
| GTTTGTGCAGGTATGTCATC+TGG | - | chr3.2:85358937-85358956 | None:intergenic | 45.0% | |
| TCATCTCTCGTTGAGTGAAG+AGG | + | chr3.2:85358891-85358910 | MS.gene015093:CDS | 45.0% | |
| TCGTGCACTTGAACCCAAAA+CGG | - | chr3.2:85359233-85359252 | None:intergenic | 45.0% | |
| TCTATGGATACTCAGACTCG+GGG | + | chr3.2:85360382-85360401 | MS.gene015093:intron | 45.0% | |
| TGAGGATTCTCTGTAGGTCT+AGG | - | chr3.2:85359119-85359138 | None:intergenic | 45.0% | |
| TGTTCTTGGCGTCATATTCG+AGG | - | chr3.2:85359319-85359338 | None:intergenic | 45.0% | |
| ! | AGTCTCCAGTTACCGATTGT+AGG | - | chr3.2:85360354-85360373 | None:intergenic | 45.0% |
| ! | CCTGATCATTATTGACTGGG+CGG | - | chr3.2:85359736-85359755 | None:intergenic | 45.0% |
| ! | GTCTCCAGTTACCGATTGTA+GGG | - | chr3.2:85360353-85360372 | None:intergenic | 45.0% |
| ! | TCATGTAGGATCGTATTGGC+CGG | - | chr3.2:85359002-85359021 | None:intergenic | 45.0% |
| ! | TTGATGCCCCTTGACCTTTT+TGG | - | chr3.2:85359836-85359855 | None:intergenic | 45.0% |
| ! | TTGGCACACCATTTTCTGGA+AGG | - | chr3.2:85359187-85359206 | None:intergenic | 45.0% |
| !! | CCGTAACAGGTTTGCTAAGT+TGG | - | chr3.2:85359696-85359715 | None:intergenic | 45.0% |
| !! | GACACCTTTGAGACATCCAT+GGG | - | chr3.2:85360001-85360020 | None:intergenic | 45.0% |
| !! | GGGTCAAGTTGAAGAAGAAG+TGG | - | chr3.2:85360747-85360766 | None:intergenic | 45.0% |
| !! | TGACACCTTTGAGACATCCA+TGG | - | chr3.2:85360002-85360021 | None:intergenic | 45.0% |
| !!! | CCTTTTTTATTGGCAGAGCC+TGG | + | chr3.2:85360025-85360044 | MS.gene015093:intron | 45.0% |
| AAGCGTGGCATTCGGGAATA+AGG | - | chr3.2:85360691-85360710 | None:intergenic | 50.0% | |
| AAGTGGCGTGTGATCAGAAG+TGG | - | chr3.2:85360730-85360749 | None:intergenic | 50.0% | |
| AATCGGAGGTTTACCTGGCT+TGG | - | chr3.2:85359206-85359225 | None:intergenic | 50.0% | |
| AGAAAATGGTGTGCCAAGCC+AGG | + | chr3.2:85359190-85359209 | MS.gene015093:intron | 50.0% | |
| AGGACCCTACAATCGGTAAC+TGG | + | chr3.2:85360346-85360365 | MS.gene015093:intron | 50.0% | |
| ATGGTGCGATTTGCAGTTGG+AGG | - | chr3.2:85359947-85359966 | None:intergenic | 50.0% | |
| ATGTAGCTGCATTCACCTCC+CGG | - | chr3.2:85359428-85359447 | None:intergenic | 50.0% | |
| CAAGTGCACGACATTCCAAC+AGG | + | chr3.2:85359242-85359261 | MS.gene015093:CDS | 50.0% | |
| CAATGACTCAACGACTCCCA+TGG | + | chr3.2:85359982-85360001 | MS.gene015093:CDS | 50.0% | |
| CCGCCCAGTCAATAATGATC+AGG | + | chr3.2:85359733-85359752 | MS.gene015093:CDS | 50.0% | |
| CCTTAACATTTCCCAAGCCG+CGG | - | chr3.2:85360095-85360114 | None:intergenic | 50.0% | |
| CGGACCATGTCTTTGATGGA+TGG | - | chr3.2:85360123-85360142 | None:intergenic | 50.0% | |
| GAAACTGTAACTGTCACCGG+TGG | - | chr3.2:85359623-85359642 | None:intergenic | 50.0% | |
| GACACGGACCATGTCTTTGA+TGG | - | chr3.2:85360127-85360146 | None:intergenic | 50.0% | |
| GACTCCCATGGATGTCTCAA+AGG | + | chr3.2:85359994-85360013 | MS.gene015093:CDS | 50.0% | |
| GAGGTTGACGCCAAGGAATA+GGG | - | chr3.2:85360767-85360786 | None:intergenic | 50.0% | |
| GCACAAATCGGAGGTTTACC+TGG | - | chr3.2:85359211-85359230 | None:intergenic | 50.0% | |
| GGAATGGTGCGATTTGCAGT+TGG | - | chr3.2:85359950-85359969 | None:intergenic | 50.0% | |
| GGATTCTCTGTAGGTCTAGG+TGG | - | chr3.2:85359116-85359135 | None:intergenic | 50.0% | |
| GGGGAGAAGAAGAGAGTCTT+GGG | + | chr3.2:85360401-85360420 | MS.gene015093:intron | 50.0% | |
| GTGCAGGTATGTCATCTGGT+AGG | - | chr3.2:85358933-85358952 | None:intergenic | 50.0% | |
| TCAACTGCGGATTCCGTAAC+AGG | - | chr3.2:85359709-85359728 | None:intergenic | 50.0% | |
| TCTCTCGTTGAGTGAAGAGG+AGG | + | chr3.2:85358894-85358913 | MS.gene015093:CDS | 50.0% | |
| TGAGGTTGACGCCAAGGAAT+AGG | - | chr3.2:85360768-85360787 | None:intergenic | 50.0% | |
| TGGAGACTCACAGCGTTCTA+TGG | + | chr3.2:85360366-85360385 | MS.gene015093:intron | 50.0% | |
| TTGAAACGGAAGCTGCAGTG+AGG | - | chr3.2:85360786-85360805 | None:intergenic | 50.0% | |
| TTTCCACAGCTGACAAGCGA+GGG | + | chr3.2:85360493-85360512 | MS.gene015093:intron | 50.0% | |
| ! | AGAGTCTGAAGCGTGGCATT+CGG | - | chr3.2:85360699-85360718 | None:intergenic | 50.0% |
| ! | ATCGTATTGGCCGGTTAGTG+AGG | - | chr3.2:85358993-85359012 | None:intergenic | 50.0% |
| !! | TGGCTTGGCACACCATTTTC+TGG | - | chr3.2:85359191-85359210 | None:intergenic | 50.0% |
| !!! | ACCTCCGATTTGTGCCGTTT+TGG | + | chr3.2:85359216-85359235 | MS.gene015093:CDS | 50.0% |
| !!! | CCTCCGATTTGTGCCGTTTT+GGG | + | chr3.2:85359217-85359236 | MS.gene015093:CDS | 50.0% |
| CCCAAAACGGCACAAATCGG+AGG | - | chr3.2:85359220-85359239 | None:intergenic | 55.0% | |
| CGATTCAAGTACGAGCGGCT+AGG | + | chr3.2:85359449-85359468 | MS.gene015093:CDS | 55.0% | |
| CGGGGAGAAGAAGAGAGTCT+TGG | + | chr3.2:85360400-85360419 | MS.gene015093:intron | 55.0% | |
| CTCGCTTGTCAGCTGTGGAA+AGG | - | chr3.2:85360494-85360513 | None:intergenic | 55.0% | |
| CTTTCCACAGCTGACAAGCG+AGG | + | chr3.2:85360492-85360511 | MS.gene015093:intron | 55.0% | |
| GATCGAATTGGTCGAAGCGG+CGG | + | chr3.2:85360246-85360265 | MS.gene015093:intron | 55.0% | |
| TGAGGAAGCGGCCAACAAGA+CGG | - | chr3.2:85358975-85358994 | None:intergenic | 55.0% | |
| TGCCACGCTTCAGACTCTTG+TGG | + | chr3.2:85360701-85360720 | MS.gene015093:intron | 55.0% | |
| TTCATTTCTGCTGGCAGGCC+TGG | - | chr3.2:85360054-85360073 | None:intergenic | 55.0% | |
| TTCCACAGCTGACAAGCGAG+GGG | + | chr3.2:85360494-85360513 | MS.gene015093:intron | 55.0% | |
| TTGGCCGCTTCCTCACTAAC+CGG | + | chr3.2:85358980-85358999 | MS.gene015093:CDS | 55.0% | |
| TTGGCCGGTTAGTGAGGAAG+CGG | - | chr3.2:85358987-85359006 | None:intergenic | 55.0% | |
| ! | AAGACGGGCTTCTTTGGAGG+AGG | - | chr3.2:85360637-85360656 | None:intergenic | 55.0% |
| ! | ACGGTCAAGACGGGCTTCTT+TGG | - | chr3.2:85360643-85360662 | None:intergenic | 55.0% |
| ! | AGCCACAAGAGTCTGAAGCG+TGG | - | chr3.2:85360706-85360725 | None:intergenic | 55.0% |
| ! | CCGCGGCTTGGGAAATGTTA+AGG | + | chr3.2:85360092-85360111 | MS.gene015093:intron | 55.0% |
| ! | GAGTCTGAAGCGTGGCATTC+GGG | - | chr3.2:85360698-85360717 | None:intergenic | 55.0% |
| ! | GTCAAGACGGGCTTCTTTGG+AGG | - | chr3.2:85360640-85360659 | None:intergenic | 55.0% |
| ! | TGAGGGTCTGTGGTTTGTGC+AGG | - | chr3.2:85358949-85358968 | None:intergenic | 55.0% |
| AAGACGGAGGTGAGGGTCTG+TGG | - | chr3.2:85358959-85358978 | None:intergenic | 60.0% | |
| ATCTTGGAACTGCCGCGGCT+TGG | + | chr3.2:85360080-85360099 | MS.gene015093:intron | 60.0% | |
| ATTGGCAGAGCCTGGCTTCC+AGG | + | chr3.2:85360033-85360052 | MS.gene015093:intron | 60.0% | |
| CTGCAGTGAGGTTGACGCCA+AGG | - | chr3.2:85360774-85360793 | None:intergenic | 60.0% | |
| GACCCTCACCTCCGTCTTGT+TGG | + | chr3.2:85358961-85358980 | MS.gene015093:CDS | 60.0% | |
| GGCCAACAAGACGGAGGTGA+GGG | - | chr3.2:85358966-85358985 | None:intergenic | 60.0% | |
| GGGGTCCTGAACGTCCTTCA+TGG | + | chr3.2:85360514-85360533 | MS.gene015093:intron | 60.0% | |
| TCACCGGTGGTTCTTGCTGC+CGG | - | chr3.2:85359610-85359629 | None:intergenic | 60.0% | |
| TCCACAGCTGACAAGCGAGG+GGG | + | chr3.2:85360495-85360514 | MS.gene015093:intron | 60.0% | |
| TCTTGGAACTGCCGCGGCTT+GGG | + | chr3.2:85360081-85360100 | MS.gene015093:intron | 60.0% | |
| ACCCCCTCGCTTGTCAGCTG+TGG | - | chr3.2:85360499-85360518 | None:intergenic | 65.0% | |
| ACTGGGCGGCGCATCAACTG+CGG | - | chr3.2:85359722-85359741 | None:intergenic | 65.0% | |
| CGGCCAACAAGACGGAGGTG+AGG | - | chr3.2:85358967-85358986 | None:intergenic | 65.0% | |
| GCGGCGGCCTAGCTGTCTTA+TGG | + | chr3.2:85360262-85360281 | MS.gene015093:intron | 65.0% | |
| GGAAGCGGCCAACAAGACGG+AGG | - | chr3.2:85358972-85358991 | None:intergenic | 65.0% | |
| TCGCCGGCAGCAAGAACCAC+CGG | + | chr3.2:85359604-85359623 | MS.gene015093:CDS | 65.0% | |
| TGCTGGCAGGCCTGGAAGCC+AGG | - | chr3.2:85360046-85360065 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 85358877 | 85360808 | 85358877 | ID=MS.gene015093 |
| chr3.2 | mRNA | 85358877 | 85360808 | 85358877 | ID=MS.gene015093.t1;Parent=MS.gene015093 |
| chr3.2 | exon | 85358877 | 85359087 | 85358877 | ID=MS.gene015093.t1.exon1;Parent=MS.gene015093.t1 |
| chr3.2 | CDS | 85358877 | 85359087 | 85358877 | ID=cds.MS.gene015093.t1;Parent=MS.gene015093.t1 |
| chr3.2 | exon | 85359192 | 85360015 | 85359192 | ID=MS.gene015093.t1.exon2;Parent=MS.gene015093.t1 |
| chr3.2 | CDS | 85359192 | 85360015 | 85359192 | ID=cds.MS.gene015093.t1;Parent=MS.gene015093.t1 |
| chr3.2 | exon | 85360794 | 85360808 | 85360794 | ID=MS.gene015093.t1.exon3;Parent=MS.gene015093.t1 |
| chr3.2 | CDS | 85360794 | 85360808 | 85360794 | ID=cds.MS.gene015093.t1;Parent=MS.gene015093.t1 |
| Gene Sequence |
| Protein sequence |
