AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005120.t1 MTR_3g053920 50.294 340 103 3 49 388 1 274 3.29e-105 315
MS.gene005120.t1 MTR_2g061500 74.419 129 33 0 49 177 1 129 8.58e-68 214
MS.gene005120.t1 MTR_7g011710 84.706 85 13 0 103 187 1 85 3.90e-46 158
MS.gene005120.t1 MTR_4g103530 68.000 100 30 1 103 202 1 98 2.18e-42 149
MS.gene005120.t1 MTR_6g033215 34.503 171 110 1 79 247 124 294 5.15e-33 127
MS.gene005120.t1 MTR_8g463110 57.627 118 50 0 337 454 1 118 1.50e-29 122
MS.gene005120.t1 MTR_0010s0370 32.386 176 117 1 52 225 2 177 1.20e-25 103
MS.gene005120.t1 MTR_0010s0350 32.386 176 117 1 52 225 2 177 1.20e-25 103
MS.gene005120.t1 MTR_1g036720 32.692 104 68 1 59 160 7 110 3.16e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005120.t1 AT2G17920 25.822 213 152 3 56 264 9 219 1.03e-17 84.3
MS.gene005120.t1 AT5G36228 27.461 193 136 2 84 274 39 229 1.06e-16 82.0
MS.gene005120.t1 AT3G57587 28.667 150 99 4 119 264 74 219 6.84e-16 79.7
MS.gene005120.t1 AT2G41590 28.049 164 114 3 103 264 58 219 7.90e-16 79.3
MS.gene005120.t1 AT3G31430 27.174 184 124 4 84 263 134 311 4.77e-14 73.6
MS.gene005120.t1 AT2G02103 26.220 164 117 2 103 264 58 219 1.40e-13 72.8
MS.gene005120.t1 AT2G13450 26.776 183 128 4 84 263 39 218 2.19e-13 72.0
MS.gene005120.t1 AT3G47920 26.000 150 103 4 119 264 3 148 1.95e-12 68.6

Find 150 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACTCAGTGGCGAGGTTT+AGG 0.233947 1.1:-60018372 None:intergenic
ATCCTTAAGCCATTTGTTAT+TGG 0.253429 1.1:-60019049 None:intergenic
CTGATGACGGAGTTCGTAAT+TGG 0.256041 1.1:+60018983 MS.gene005120:CDS
AGCAGCAGGCATGGGAGCTT+GGG 0.266517 1.1:-60019103 None:intergenic
TTTGGCTGATCGTGAGATTC+AGG 0.308864 1.1:+60018435 MS.gene005120:CDS
TTTGGCTGATTACAACAAAA+AGG 0.311916 1.1:-60018703 None:intergenic
CAGCAGCAGGCATGGGAGCT+TGG 0.315778 1.1:-60019104 None:intergenic
AGACTCAGTGGCGAGGTTTA+GGG 0.329947 1.1:-60018371 None:intergenic
AAACCGGTTGCTTCTCGTAT+TGG 0.332821 1.1:+60019018 MS.gene005120:CDS
CCCTCAAGTCTCAATATTGC+TGG 0.350835 1.1:+60018322 MS.gene005120:CDS
AGTGAGTCAAATCTTGTTCC+TGG 0.364702 1.1:+60018235 MS.gene005120:CDS
CCAAATGTTGGTCAGGGTAT+AGG 0.371467 1.1:+60018721 MS.gene005120:CDS
ACCTGAACCATATGGACATC+TGG 0.375036 1.1:+60018662 MS.gene005120:CDS
CAAGCTCCCATGCCTGCTGC+TGG 0.379709 1.1:+60019105 MS.gene005120:CDS
TCATTTGCTGCTGATGGGGA+TGG 0.384310 1.1:+60019471 MS.gene005120:CDS
GACATCTGGGTTCAGGTTCA+TGG 0.384445 1.1:+60018676 MS.gene005120:CDS
AATAGGTTCAAATGTTAGTC+AGG 0.388463 1.1:+60019506 MS.gene005120:CDS
AGCCATACGCTCGCTGAAAT+AGG 0.391985 1.1:-60018461 None:intergenic
CCCAGATGTCCATATGGTTC+AGG 0.402215 1.1:-60018663 None:intergenic
CCTATACCCTGACCAACATT+TGG 0.404583 1.1:-60018721 None:intergenic
CCATATGGACATCTGGGTTC+AGG 0.407479 1.1:+60018669 MS.gene005120:CDS
TTGCCCGGACTTGTTCGAAT+TGG 0.408985 1.1:+60018957 MS.gene005120:CDS
TAATCAGCCAAATGTTGGTC+AGG 0.412014 1.1:+60018714 MS.gene005120:CDS
CTGTTTGGTAGGACGTGTTT+TGG 0.412271 1.1:+60018417 MS.gene005120:CDS
CACCATCCTCGATCACTGTT+TGG 0.415170 1.1:+60018402 MS.gene005120:CDS
ACAATAGAAACTCGCTTGCC+TGG 0.418531 1.1:-60018496 None:intergenic
CATTTGCTGCTGATGGGGAT+GGG 0.418666 1.1:+60019472 MS.gene005120:CDS
ATTTGCTGCTGATGGGGATG+GGG 0.423209 1.1:+60019473 MS.gene005120:CDS
GAGGATGACCAGGATGTTAC+GGG 0.426442 1.1:+60019393 MS.gene005120:CDS
ATGGCTCGTGCTTGGAAGCC+AGG 0.426942 1.1:+60018478 MS.gene005120:CDS
AAGTGCTATGGATGGTATTA+CGG 0.427130 1.1:-60018777 None:intergenic
GCAGGTAAACCGAGCACCAC+TGG 0.435384 1.1:-60019345 None:intergenic
TGAAAGTTGCGGCCAGCAGC+AGG 0.439396 1.1:-60019117 None:intergenic
TGCCAATAACAAATGGCTTA+AGG 0.440251 1.1:+60019047 MS.gene005120:CDS
TTGCGGCCAGCAGCAGGCAT+GGG 0.441899 1.1:-60019111 None:intergenic
TGATGACGGAGTTCGTAATT+GGG 0.442501 1.1:+60018984 MS.gene005120:CDS
TGAGGATGACCAGGATGTTA+CGG 0.444088 1.1:+60019392 MS.gene005120:CDS
CCTTGTTCCAACCGTTCCTA+TGG 0.448786 1.1:+60018297 MS.gene005120:CDS
ATCTGTCGACCTGAACCATA+TGG 0.449199 1.1:+60018654 MS.gene005120:CDS
ACTCACTGACTGTGTGCTTA+CGG 0.451326 1.1:-60018219 None:intergenic
GCTTCCAATTCGAACAAGTC+CGG 0.452234 1.1:-60018961 None:intergenic
GAAGCAACCGGTTTCAGATC+AGG 0.453087 1.1:-60019009 None:intergenic
TACTCTTGGTCCGAGGTTAA+CGG 0.456842 1.1:+60020429 MS.gene005120:CDS
CTGACTGTGTGCTTACGGCT+AGG 0.464509 1.1:-60018214 None:intergenic
GCCAAAGTGAAGCATGTTGC+TGG 0.465578 1.1:+60019243 MS.gene005120:CDS
CAGGGTATAGGTAGCTATCT+AGG 0.468939 1.1:+60018733 MS.gene005120:CDS
TGACTGTGTGCTTACGGCTA+GGG 0.472706 1.1:-60018213 None:intergenic
TCAGATTCCTCACTTGTAAA+CGG 0.473482 1.1:-60019372 None:intergenic
GTTTCTATTGTCAAAACTGA+TGG 0.474751 1.1:+60018508 MS.gene005120:CDS
CCTGAACCCAGATGTCCATA+TGG 0.477535 1.1:-60018669 None:intergenic
GTTGCGGCCAGCAGCAGGCA+TGG 0.478318 1.1:-60019112 None:intergenic
TTACATCATTTGCTGCTGAT+GGG 0.483354 1.1:+60019466 MS.gene005120:CDS
CCGGGCAAACCTTGTCTGAA+TGG 0.485324 1.1:-60018942 None:intergenic
CCAGCAATATTGAGACTTGA+GGG 0.485345 1.1:-60018322 None:intergenic
TGTTACAGGTGCGGACTGCT+TGG 0.488132 1.1:+60018919 MS.gene005120:CDS
TGCCTATTTCAGCGAGCGTA+TGG 0.489265 1.1:+60018459 MS.gene005120:CDS
GCTGCCCGTGTTCTTGATGA+TGG 0.490201 1.1:+60018568 MS.gene005120:CDS
CCATAGGAACGGTTGGAACA+AGG 0.498971 1.1:-60018297 None:intergenic
CCATTCAGACAAGGTTTGCC+CGG 0.499540 1.1:+60018942 MS.gene005120:CDS
GTCATGGACCGTATACAACC+TGG 0.499758 1.1:+60018619 MS.gene005120:CDS
GTTCAGCTGCCAATAACAAA+TGG 0.501013 1.1:+60019040 MS.gene005120:CDS
TGGTTCAGGTCGACAGATGT+AGG 0.502239 1.1:-60018649 None:intergenic
GTGTATTCTTCGCATACTCT+TGG 0.503224 1.1:+60020415 MS.gene005120:CDS
GCGAGCGTATGGCTCGTGCT+TGG 0.503834 1.1:+60018470 MS.gene005120:CDS
ATTACATCATTTGCTGCTGA+TGG 0.505133 1.1:+60019465 MS.gene005120:CDS
TGGAAAGTCCGTGTTAGTAC+TGG 0.506120 1.1:+60018850 MS.gene005120:CDS
AGTGCATTCAGGAGATGGTC+AGG 0.506180 1.1:+60020549 MS.gene005120:intron
ACCAGCAACATGCTTCACTT+TGG 0.507514 1.1:-60019244 None:intergenic
AGGTAAAAGATGCACTTGAC+AGG 0.509394 1.1:-60019277 None:intergenic
GTTTGTCTCGGCACAACAGA+TGG 0.513246 1.1:-60019078 None:intergenic
GCTGGCCGCAACTTTCATCC+AGG 0.513777 1.1:+60019123 MS.gene005120:CDS
GAAAATTATCATACAGCCAT+GGG 0.515399 1.1:-60018591 None:intergenic
TTGGGGACCTGATCTGAAAC+CGG 0.517910 1.1:+60019002 MS.gene005120:CDS
GGACAACCCCAGGTTGTATA+CGG 0.519072 1.1:-60018627 None:intergenic
ACAGGTTGCCCAGTGGTGCT+CGG 0.520634 1.1:+60019336 MS.gene005120:CDS
GTGAGTCAAATCTTGTTCCT+GGG 0.521605 1.1:+60018236 MS.gene005120:CDS
TTTCTATTGTCAAAACTGAT+GGG 0.525861 1.1:+60018509 MS.gene005120:CDS
TCACTTGTAAACGGAGCAGC+AGG 0.527702 1.1:-60019363 None:intergenic
AAATTTAAGTATGAGAAACT+TGG 0.529182 1.1:+60018889 MS.gene005120:CDS
TGGTTTAACCATTGCTGAAG+AGG 0.530085 1.1:+60018342 MS.gene005120:CDS
CTTCCAATTCGAACAAGTCC+GGG 0.531082 1.1:-60018960 None:intergenic
TCAGCTTCCACACTCATCAC+AGG 0.531993 1.1:+60019318 MS.gene005120:CDS
ATGTAATTGCACCATTCTGA+AGG 0.538475 1.1:-60019449 None:intergenic
GGAGCTTGGGGAGTTTGTCT+CGG 0.539891 1.1:-60019090 None:intergenic
GTTGGAACAAGGGGACAGAT+AGG 0.540379 1.1:-60018286 None:intergenic
TGAAAATTATCATACAGCCA+TGG 0.541083 1.1:-60018592 None:intergenic
TTTGCTGCTGATGGGGATGG+GGG 0.546802 1.1:+60019474 MS.gene005120:CDS
TGAGGAATCTGAGGATGACC+AGG 0.548864 1.1:+60019383 MS.gene005120:CDS
GGTTTAACCATTGCTGAAGA+GGG 0.548896 1.1:+60018343 MS.gene005120:CDS
GAACCAATACGAGAAGCAAC+CGG 0.551481 1.1:-60019021 None:intergenic
GCAGCAGGCATGGGAGCTTG+GGG 0.551902 1.1:-60019102 None:intergenic
TGTTGTAATCAGCCAAATGT+TGG 0.554828 1.1:+60018709 MS.gene005120:CDS
GTTCTGAACCCGTAACATCC+TGG 0.558247 1.1:-60019401 None:intergenic
GGTTAAACCCTCTTCAGCAA+TGG 0.558439 1.1:-60018350 None:intergenic
ACCAGCAATATTGAGACTTG+AGG 0.558584 1.1:-60018323 None:intergenic
CAGAACTTAAGAAGCGAAAG+AGG 0.563185 1.1:+60019418 MS.gene005120:CDS
TTGAGACTTGAGGGATCCAT+AGG 0.568944 1.1:-60018313 None:intergenic
TCAATCGCATATAAGTGCTA+TGG 0.572634 1.1:-60018789 None:intergenic
GGTTCAGGTCGACAGATGTA+GGG 0.573327 1.1:-60018648 None:intergenic
GAGGGATCCATAGGAACGGT+TGG 0.575377 1.1:-60018304 None:intergenic
TTCGAATTGGAAGCTGATGA+CGG 0.577920 1.1:+60018970 MS.gene005120:CDS
ATCCTCGATCACTGTTTGGT+AGG 0.585067 1.1:+60018406 MS.gene005120:CDS
CAGGTAAACCGAGCACCACT+GGG 0.586382 1.1:-60019344 None:intergenic
ATAGGTTCAAATGTTAGTCA+GGG 0.586644 1.1:+60019507 MS.gene005120:CDS
TCATGGACCGTATACAACCT+GGG 0.587245 1.1:+60018620 MS.gene005120:CDS
ACCGCACTAGCAGCACCACC+TGG 0.589399 1.1:-60019141 None:intergenic
CATAGGAACGGTTGGAACAA+GGG 0.594621 1.1:-60018296 None:intergenic
TGCTGCTCCGTTTACAAGTG+AGG 0.594642 1.1:+60019365 MS.gene005120:CDS
TACATCATTTGCTGCTGATG+GGG 0.595588 1.1:+60019467 MS.gene005120:CDS
TTTGTCTCGGCACAACAGAT+GGG 0.598784 1.1:-60019077 None:intergenic
CCTGAACCATATGGACATCT+GGG 0.599548 1.1:+60018663 MS.gene005120:CDS
GAAAGTCCTGCAGAAGCAGA+AGG 0.599759 1.1:-60019297 None:intergenic
TCAGCGCACGCCGTTAACCT+CGG 0.599825 1.1:-60020439 None:intergenic
TTCTATTGTCAAAACTGATG+GGG 0.600760 1.1:+60018510 MS.gene005120:CDS
ATAGGAACGGTTGGAACAAG+GGG 0.602591 1.1:-60018295 None:intergenic
CTTCGCATACTCTTGGTCCG+AGG 0.604258 1.1:+60020422 MS.gene005120:CDS
GTGTTCTTGATGATGGCCCA+TGG 0.605740 1.1:+60018575 MS.gene005120:CDS
TTTGTATGTGGGAAAGCATG+GGG 0.607368 1.1:-60018189 None:intergenic
GTTCAAATGTTAGTCAGGGG+GGG 0.608482 1.1:+60019511 MS.gene005120:CDS
TACCAAACAGTGATCGAGGA+TGG 0.611265 1.1:-60018404 None:intergenic
AGGATGATGACCCTTCAGAA+TGG 0.611730 1.1:+60019438 MS.gene005120:CDS
TCCAGGTGGTGCTGCTAGTG+CGG 0.614412 1.1:+60019140 MS.gene005120:CDS
CGTAATCACCAGTACTAACA+CGG 0.615539 1.1:-60018858 None:intergenic
ACTGCTTGGCCATTCAGACA+AGG 0.615646 1.1:+60018933 MS.gene005120:CDS
CACCACCTGGATGAAAGTTG+CGG 0.616021 1.1:-60019128 None:intergenic
ACAGATGTAGGGACAACCCC+AGG 0.618679 1.1:-60018637 None:intergenic
GGCCGCAACTTTCATCCAGG+TGG 0.619748 1.1:+60019126 MS.gene005120:CDS
ATGGGCCATCATCAAGAACA+CGG 0.622255 1.1:-60018573 None:intergenic
CAACATGCTTCACTTTGGCG+AGG 0.622470 1.1:-60019239 None:intergenic
AAAGATGCACTTGACAGGTA+CGG 0.627868 1.1:-60019272 None:intergenic
TCGCATATAAGTGCTATGGA+TGG 0.634744 1.1:-60018785 None:intergenic
CTCGGCACAACAGATGGGAT+AGG 0.642910 1.1:-60019072 None:intergenic
GAGGTTAACGGCGTGCGCTG+AGG 0.645411 1.1:+60020441 MS.gene005120:CDS
AATCAGCCAAATGTTGGTCA+GGG 0.647271 1.1:+60018715 MS.gene005120:CDS
TAGGTTCAAATGTTAGTCAG+GGG 0.648436 1.1:+60019508 MS.gene005120:CDS
GATGACGGAGTTCGTAATTG+GGG 0.648553 1.1:+60018985 MS.gene005120:CDS
GTTTACAAGTGAGGAATCTG+AGG 0.651895 1.1:+60019374 MS.gene005120:CDS
GGTTCAAATGTTAGTCAGGG+GGG 0.657576 1.1:+60019510 MS.gene005120:CDS
TGGGCCATCATCAAGAACAC+GGG 0.657924 1.1:-60018572 None:intergenic
TGTAATTGCACCATTCTGAA+GGG 0.659743 1.1:-60019448 None:intergenic
AGGTTCAAATGTTAGTCAGG+GGG 0.661132 1.1:+60019509 MS.gene005120:CDS
GGTGTTAGTTTCAGACTCAG+TGG 0.662728 1.1:-60018383 None:intergenic
GTCCTACCAAACAGTGATCG+AGG 0.664033 1.1:-60018408 None:intergenic
CATGGACCGTATACAACCTG+GGG 0.669644 1.1:+60018621 MS.gene005120:CDS
TAGTTTCAGACTCAGTGGCG+AGG 0.677757 1.1:-60018378 None:intergenic
GAAACAAAATTGAAACACCC+AGG 0.686745 1.1:-60018253 None:intergenic
ACTTGAGGGATCCATAGGAA+CGG 0.687296 1.1:-60018308 None:intergenic
TGGGCAACCTGTGATGAGTG+TGG 0.688147 1.1:-60019325 None:intergenic
GGGACAGATAGGAAAACGAG+TGG 0.690351 1.1:-60018275 None:intergenic
ACTCATCACAGGTTGCCCAG+TGG 0.753003 1.1:+60019329 MS.gene005120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAGTATGAGAAACT+TGG + chr1.1:60018889-60018908 MS.gene005120:CDS 20.0%
!! TAATAAAATAGGATAGTGAT+CGG - chr1.1:60020287-60020306 None:intergenic 20.0%
!!! TGATAATTTTCATATTGTCA+TGG + chr1.1:60018603-60018622 MS.gene005120:CDS 20.0%
! TCACTTAGGAATAAAATATC+CGG - chr1.1:60019707-60019726 None:intergenic 25.0%
! TTTCTATTGTCAAAACTGAT+GGG + chr1.1:60018509-60018528 MS.gene005120:CDS 25.0%
!! GGAGTTCTTCAATTTTATTA+CGG - chr1.1:60019742-60019761 None:intergenic 25.0%
!!! AACTTGGTATTTTTTGTTAC+AGG + chr1.1:60018905-60018924 MS.gene005120:CDS 25.0%
AATAGGTTCAAATGTTAGTC+AGG + chr1.1:60019506-60019525 MS.gene005120:CDS 30.0%
AATAGTTTCAACAATGGCAT+TGG - chr1.1:60020251-60020270 None:intergenic 30.0%
AATCGTAACCAAGCAAAAAA+CGG - chr1.1:60019763-60019782 None:intergenic 30.0%
AGCAACAATAGTTTCAACAA+TGG - chr1.1:60020257-60020276 None:intergenic 30.0%
ATAGGTTCAAATGTTAGTCA+GGG + chr1.1:60019507-60019526 MS.gene005120:CDS 30.0%
ATAGTTTCAACAATGGCATT+GGG - chr1.1:60020250-60020269 None:intergenic 30.0%
CCACAATCTCAATAGAAATA+TGG - chr1.1:60019880-60019899 None:intergenic 30.0%
GAAAATTATCATACAGCCAT+GGG - chr1.1:60018594-60018613 None:intergenic 30.0%
GTTTCTATTGTCAAAACTGA+TGG + chr1.1:60018508-60018527 MS.gene005120:CDS 30.0%
TAAATTGATGTGAGAGTTGA+CGG - chr1.1:60019985-60020004 None:intergenic 30.0%
TGAAAATTATCATACAGCCA+TGG - chr1.1:60018595-60018614 None:intergenic 30.0%
TTCTATTGTCAAAACTGATG+GGG + chr1.1:60018510-60018529 MS.gene005120:CDS 30.0%
TTTGGCTGATTACAACAAAA+AGG - chr1.1:60018706-60018725 None:intergenic 30.0%
! CCATATTTCTATTGAGATTG+TGG + chr1.1:60019877-60019896 MS.gene005120:intron 30.0%
! TACGGTCATCATAGATTTTA+AGG - chr1.1:60018762-60018781 None:intergenic 30.0%
! TTTTCAGTTCCACCATAAAA+TGG + chr1.1:60018543-60018562 MS.gene005120:CDS 30.0%
!! ATCCTTAAGCCATTTGTTAT+TGG - chr1.1:60019052-60019071 None:intergenic 30.0%
!! TATTAATGGCTTTAGACAAG+CGG + chr1.1:60020090-60020109 MS.gene005120:intron 30.0%
!! TTTTATGGTGGAACTGAAAA+AGG - chr1.1:60018543-60018562 None:intergenic 30.0%
AAATCACCAAATATGCACCA+TGG - chr1.1:60020013-60020032 None:intergenic 35.0%
AAGAGTTATTACCAAGAGCA+CGG - chr1.1:60020213-60020232 None:intergenic 35.0%
AAGTGCTATGGATGGTATTA+CGG - chr1.1:60018780-60018799 None:intergenic 35.0%
AATCACCAAATATGCACCAT+GGG - chr1.1:60020012-60020031 None:intergenic 35.0%
ACATCAGTGTCATCATACAA+TGG - chr1.1:60019564-60019583 None:intergenic 35.0%
ATCTAGTAGCATGGAATTGT+CGG + chr1.1:60019624-60019643 MS.gene005120:intron 35.0%
ATGTAATTGCACCATTCTGA+AGG - chr1.1:60019452-60019471 None:intergenic 35.0%
CAACTCTCACATCAATTTAC+AGG + chr1.1:60019986-60020005 MS.gene005120:intron 35.0%
GAAACAAAATTGAAACACCC+AGG - chr1.1:60018256-60018275 None:intergenic 35.0%
GCATGTGATGAAGTTGTTTA+CGG - chr1.1:60020525-60020544 None:intergenic 35.0%
GCTACTAGATTCATTTACCT+AGG - chr1.1:60019614-60019633 None:intergenic 35.0%
GGTAAATGAATCTAGTAGCA+TGG + chr1.1:60019615-60019634 MS.gene005120:intron 35.0%
GTAAACAACTTCATCACATG+CGG + chr1.1:60020524-60020543 MS.gene005120:intron 35.0%
GTATGATGACACTGATGTAA+TGG + chr1.1:60019566-60019585 MS.gene005120:intron 35.0%
TAGGTTCAAATGTTAGTCAG+GGG + chr1.1:60019508-60019527 MS.gene005120:CDS 35.0%
TAGTTTCAACAATGGCATTG+GGG - chr1.1:60020249-60020268 None:intergenic 35.0%
TCAATCGCATATAAGTGCTA+TGG - chr1.1:60018792-60018811 None:intergenic 35.0%
TCAGATTCCTCACTTGTAAA+CGG - chr1.1:60019375-60019394 None:intergenic 35.0%
TGCCAATAACAAATGGCTTA+AGG + chr1.1:60019047-60019066 MS.gene005120:CDS 35.0%
TGTAATTGCACCATTCTGAA+GGG - chr1.1:60019451-60019470 None:intergenic 35.0%
TGTTGTAATCAGCCAAATGT+TGG + chr1.1:60018709-60018728 MS.gene005120:CDS 35.0%
TTAAGATCAGGAATTGCACT+CGG - chr1.1:60019662-60019681 None:intergenic 35.0%
TTACGAAAATGCATGGCATT+TGG + chr1.1:60020354-60020373 MS.gene005120:intron 35.0%
! AATGCCATGCATTTTCGTAA+CGG - chr1.1:60020354-60020373 None:intergenic 35.0%
! ATTACATCATTTGCTGCTGA+TGG + chr1.1:60019465-60019484 MS.gene005120:CDS 35.0%
! TTACATCATTTGCTGCTGAT+GGG + chr1.1:60019466-60019485 MS.gene005120:CDS 35.0%
!! GGGGAGCATTGTAATAAAAT+AGG - chr1.1:60020298-60020317 None:intergenic 35.0%
!! TTTTGTATGTGGGAAAGCAT+GGG - chr1.1:60018193-60018212 None:intergenic 35.0%
!!! ACTTTCCACTCTTTTTTCAG+TGG - chr1.1:60018838-60018857 None:intergenic 35.0%
!!! CTTTCCACTCTTTTTTCAGT+GGG - chr1.1:60018837-60018856 None:intergenic 35.0%
!!! GGTATTTTTTGTTACAGGTG+CGG + chr1.1:60018910-60018929 MS.gene005120:CDS 35.0%
AAAGATGCACTTGACAGGTA+CGG - chr1.1:60019275-60019294 None:intergenic 40.0%
AAATATCCGGATTGAAGTGC+CGG - chr1.1:60019694-60019713 None:intergenic 40.0%
AAGCCATTAATAAGCCACTG+AGG - chr1.1:60020082-60020101 None:intergenic 40.0%
AAGTTACGTTTGTGGGATTG+AGG - chr1.1:60020331-60020350 None:intergenic 40.0%
AATCAGCCAAATGTTGGTCA+GGG + chr1.1:60018715-60018734 MS.gene005120:CDS 40.0%
ACCAGCAATATTGAGACTTG+AGG - chr1.1:60018326-60018345 None:intergenic 40.0%
ACTTCCGTTACGAAAATGCA+TGG + chr1.1:60020347-60020366 MS.gene005120:intron 40.0%
AGACCTCAGTGGCTTATTAA+TGG + chr1.1:60020076-60020095 MS.gene005120:intron 40.0%
AGACTCTTGAACCACGAAAA+AGG - chr1.1:60020157-60020176 None:intergenic 40.0%
AGGACCTTGTTACTAACTCT+TGG + chr1.1:60020389-60020408 MS.gene005120:intron 40.0%
AGGTAAAAGATGCACTTGAC+AGG - chr1.1:60019280-60019299 None:intergenic 40.0%
AGGTTCAAATGTTAGTCAGG+GGG + chr1.1:60019509-60019528 MS.gene005120:CDS 40.0%
AGTGAGTCAAATCTTGTTCC+TGG + chr1.1:60018235-60018254 MS.gene005120:CDS 40.0%
CAGAACTTAAGAAGCGAAAG+AGG + chr1.1:60019418-60019437 MS.gene005120:CDS 40.0%
CCAGCAATATTGAGACTTGA+GGG - chr1.1:60018325-60018344 None:intergenic 40.0%
CGTAATCACCAGTACTAACA+CGG - chr1.1:60018861-60018880 None:intergenic 40.0%
CTAGATTCATTTACCTAGGC+AGG - chr1.1:60019610-60019629 None:intergenic 40.0%
CTGATCTTAAGTACCTAGTC+CGG + chr1.1:60019672-60019691 MS.gene005120:intron 40.0%
GAGATTGTGGATTCTGTTCA+TGG + chr1.1:60019890-60019909 MS.gene005120:intron 40.0%
GGTGGAACTGAAAAAGGAAA+CGG - chr1.1:60018537-60018556 None:intergenic 40.0%
GGTTTAACCATTGCTGAAGA+GGG + chr1.1:60018343-60018362 MS.gene005120:CDS 40.0%
GTGAGTCAAATCTTGTTCCT+GGG + chr1.1:60018236-60018255 MS.gene005120:CDS 40.0%
GTGTATTCTTCGCATACTCT+TGG + chr1.1:60020415-60020434 MS.gene005120:CDS 40.0%
GTTCAGCTGCCAATAACAAA+TGG + chr1.1:60019040-60019059 MS.gene005120:CDS 40.0%
GTTTACAAGTGAGGAATCTG+AGG + chr1.1:60019374-60019393 MS.gene005120:CDS 40.0%
TAAGATCAGGAATTGCACTC+GGG - chr1.1:60019661-60019680 None:intergenic 40.0%
TAATCAGCCAAATGTTGGTC+AGG + chr1.1:60018714-60018733 MS.gene005120:CDS 40.0%
TCGCATATAAGTGCTATGGA+TGG - chr1.1:60018788-60018807 None:intergenic 40.0%
TCTAGTAGCATGGAATTGTC+GGG + chr1.1:60019625-60019644 MS.gene005120:intron 40.0%
TGGTTTAACCATTGCTGAAG+AGG + chr1.1:60018342-60018361 MS.gene005120:CDS 40.0%
TTAATAAGCCACTGAGGTCT+AGG - chr1.1:60020076-60020095 None:intergenic 40.0%
TTCGAATTGGAAGCTGATGA+CGG + chr1.1:60018970-60018989 MS.gene005120:CDS 40.0%
! AAATGCATGGCATTTGGAAC+CGG + chr1.1:60020360-60020379 MS.gene005120:intron 40.0%
! GATGGGGGAACTTTTGTAAT+AGG + chr1.1:60019489-60019508 MS.gene005120:CDS 40.0%
! GTAACGGAAGTTACGTTTGT+GGG - chr1.1:60020338-60020357 None:intergenic 40.0%
! GTGCTCTTGGTAATAACTCT+TGG + chr1.1:60020212-60020231 MS.gene005120:intron 40.0%
! GTTTTGTATGTGGGAAAGCA+TGG - chr1.1:60018194-60018213 None:intergenic 40.0%
! TACATCATTTGCTGCTGATG+GGG + chr1.1:60019467-60019486 MS.gene005120:CDS 40.0%
! TTTGTATGTGGGAAAGCATG+GGG - chr1.1:60018192-60018211 None:intergenic 40.0%
! TTTTCGTGGTTCAAGAGTCT+TGG + chr1.1:60020157-60020176 MS.gene005120:intron 40.0%
!! TGATGACGGAGTTCGTAATT+GGG + chr1.1:60018984-60019003 MS.gene005120:CDS 40.0%
!!! GAAGAACTCCGTTTTTTGCT+TGG + chr1.1:60019752-60019771 MS.gene005120:intron 40.0%
AAACCGGTTGCTTCTCGTAT+TGG + chr1.1:60019018-60019037 MS.gene005120:CDS 45.0%
ACAATAGAAACTCGCTTGCC+TGG - chr1.1:60018499-60018518 None:intergenic 45.0%
ACCAGCAACATGCTTCACTT+TGG - chr1.1:60019247-60019266 None:intergenic 45.0%
ACCTGAACCATATGGACATC+TGG + chr1.1:60018662-60018681 MS.gene005120:CDS 45.0%
ACTTGAGGGATCCATAGGAA+CGG - chr1.1:60018311-60018330 None:intergenic 45.0%
AGGATGATGACCCTTCAGAA+TGG + chr1.1:60019438-60019457 MS.gene005120:CDS 45.0%
ATAGGAACGGTTGGAACAAG+GGG - chr1.1:60018298-60018317 None:intergenic 45.0%
ATAGGATAGTGATCGGATGC+AGG - chr1.1:60020280-60020299 None:intergenic 45.0%
ATCCTCGATCACTGTTTGGT+AGG + chr1.1:60018406-60018425 MS.gene005120:CDS 45.0%
ATCTGTCGACCTGAACCATA+TGG + chr1.1:60018654-60018673 MS.gene005120:CDS 45.0%
ATGGGCCATCATCAAGAACA+CGG - chr1.1:60018576-60018595 None:intergenic 45.0%
CACATCAATTTACAGGCCCA+TGG + chr1.1:60019993-60020012 MS.gene005120:intron 45.0%
CAGGGTATAGGTAGCTATCT+AGG + chr1.1:60018733-60018752 MS.gene005120:CDS 45.0%
CATAGGAACGGTTGGAACAA+GGG - chr1.1:60018299-60018318 None:intergenic 45.0%
CCAAATGTTGGTCAGGGTAT+AGG + chr1.1:60018721-60018740 MS.gene005120:CDS 45.0%
CCCTCAAGTCTCAATATTGC+TGG + chr1.1:60018322-60018341 MS.gene005120:CDS 45.0%
CCTATACCCTGACCAACATT+TGG - chr1.1:60018724-60018743 None:intergenic 45.0%
CCTGAACCATATGGACATCT+GGG + chr1.1:60018663-60018682 MS.gene005120:CDS 45.0%
CCTGCCAAGAGTTAGTAACA+AGG - chr1.1:60020396-60020415 None:intergenic 45.0%
CCTTGTTACTAACTCTTGGC+AGG + chr1.1:60020393-60020412 MS.gene005120:intron 45.0%
CTAGTAGCATGGAATTGTCG+GGG + chr1.1:60019626-60019645 MS.gene005120:intron 45.0%
CTCTCTTCTCACTAGCATCA+AGG - chr1.1:60020045-60020064 None:intergenic 45.0%
CTGAGGATATGTCAGTATGG+CGG + chr1.1:60020458-60020477 MS.gene005120:intron 45.0%
CTGTCCCACTGAAAAAAGAG+TGG + chr1.1:60018830-60018849 MS.gene005120:CDS 45.0%
CTTCCAATTCGAACAAGTCC+GGG - chr1.1:60018963-60018982 None:intergenic 45.0%
CTTGATGCTAGTGAGAAGAG+AGG + chr1.1:60020043-60020062 MS.gene005120:intron 45.0%
GAACCAATACGAGAAGCAAC+CGG - chr1.1:60019024-60019043 None:intergenic 45.0%
GATGACACTGATGTAATGGC+AGG + chr1.1:60019570-60019589 MS.gene005120:intron 45.0%
GCTTCCAATTCGAACAAGTC+CGG - chr1.1:60018964-60018983 None:intergenic 45.0%
GGTTAAACCCTCTTCAGCAA+TGG - chr1.1:60018353-60018372 None:intergenic 45.0%
GGTTCAAATGTTAGTCAGGG+GGG + chr1.1:60019510-60019529 MS.gene005120:CDS 45.0%
GTTCAAATGTTAGTCAGGGG+GGG + chr1.1:60019511-60019530 MS.gene005120:CDS 45.0%
TACCAAACAGTGATCGAGGA+TGG - chr1.1:60018407-60018426 None:intergenic 45.0%
TACTCTTGGTCCGAGGTTAA+CGG + chr1.1:60020429-60020448 MS.gene005120:CDS 45.0%
TCATGGACCGTATACAACCT+GGG + chr1.1:60018620-60018639 MS.gene005120:CDS 45.0%
TGAGGATGACCAGGATGTTA+CGG + chr1.1:60019392-60019411 MS.gene005120:CDS 45.0%
TGGAAAGTCCGTGTTAGTAC+TGG + chr1.1:60018850-60018869 MS.gene005120:CDS 45.0%
TGGATTCTGTTCATGGTGCT+TGG + chr1.1:60019897-60019916 MS.gene005120:intron 45.0%
TGGCGATTGACAGGTTACTA+TGG + chr1.1:60019917-60019936 MS.gene005120:intron 45.0%
TTCAAATGTTAGTCAGGGGG+GGG + chr1.1:60019512-60019531 MS.gene005120:CDS 45.0%
TTGACGGAGAAAGTTCCAAG+CGG - chr1.1:60019969-60019988 None:intergenic 45.0%
TTGAGACTTGAGGGATCCAT+AGG - chr1.1:60018316-60018335 None:intergenic 45.0%
TTTGGCTGATCGTGAGATTC+AGG + chr1.1:60018435-60018454 MS.gene005120:CDS 45.0%
TTTGTCTCGGCACAACAGAT+GGG - chr1.1:60019080-60019099 None:intergenic 45.0%
! AATGCATGGCATTTGGAACC+GGG + chr1.1:60020361-60020380 MS.gene005120:intron 45.0%
! ACTCACTGACTGTGTGCTTA+CGG - chr1.1:60018222-60018241 None:intergenic 45.0%
! CGGACTAGGTACTTAAGATC+AGG - chr1.1:60019674-60019693 None:intergenic 45.0%
! CGTAACGGAAGTTACGTTTG+TGG - chr1.1:60020339-60020358 None:intergenic 45.0%
! CTGTTTGGTAGGACGTGTTT+TGG + chr1.1:60018417-60018436 MS.gene005120:CDS 45.0%
! CTTTTACCTTCTGCTTCTGC+AGG + chr1.1:60019291-60019310 MS.gene005120:CDS 45.0%
! GGTGTTAGTTTCAGACTCAG+TGG - chr1.1:60018386-60018405 None:intergenic 45.0%
!! ACGGCTAGGGTTTTGTATGT+GGG - chr1.1:60018203-60018222 None:intergenic 45.0%
!! AGACAAGCGGTTATTGACTC+TGG + chr1.1:60020103-60020122 MS.gene005120:intron 45.0%
!! CTGATGACGGAGTTCGTAAT+TGG + chr1.1:60018983-60019002 MS.gene005120:CDS 45.0%
!! GATGACGGAGTTCGTAATTG+GGG + chr1.1:60018985-60019004 MS.gene005120:CDS 45.0%
!! TACGGCTAGGGTTTTGTATG+TGG - chr1.1:60018204-60018223 None:intergenic 45.0%
ACAGGCCCATGGTGCATATT+TGG + chr1.1:60020004-60020023 MS.gene005120:intron 50.0%
ACTGCTTGGCCATTCAGACA+AGG + chr1.1:60018933-60018952 MS.gene005120:CDS 50.0%
AGACTCAGTGGCGAGGTTTA+GGG - chr1.1:60018374-60018393 None:intergenic 50.0%
AGCCATACGCTCGCTGAAAT+AGG - chr1.1:60018464-60018483 None:intergenic 50.0%
AGTGCATTCAGGAGATGGTC+AGG + chr1.1:60020549-60020568 MS.gene005120:intron 50.0%
ATTGTCAGATGTTCCGACCG+AGG + chr1.1:60020126-60020145 MS.gene005120:intron 50.0%
CAACATGCTTCACTTTGGCG+AGG - chr1.1:60019242-60019261 None:intergenic 50.0%
CACCACCTGGATGAAAGTTG+CGG - chr1.1:60019131-60019150 None:intergenic 50.0%
CACCATCCTCGATCACTGTT+TGG + chr1.1:60018402-60018421 MS.gene005120:CDS 50.0%
CATGGACCGTATACAACCTG+GGG + chr1.1:60018621-60018640 MS.gene005120:CDS 50.0%
CCACGAAAAAGGATAGCCCT+CGG - chr1.1:60020146-60020165 None:intergenic 50.0%
CCATAGGAACGGTTGGAACA+AGG - chr1.1:60018300-60018319 None:intergenic 50.0%
CCATATGGACATCTGGGTTC+AGG + chr1.1:60018669-60018688 MS.gene005120:CDS 50.0%
CCATTCAGACAAGGTTTGCC+CGG + chr1.1:60018942-60018961 MS.gene005120:CDS 50.0%
CCCAGATGTCCATATGGTTC+AGG - chr1.1:60018666-60018685 None:intergenic 50.0%
CCTGAACCCAGATGTCCATA+TGG - chr1.1:60018672-60018691 None:intergenic 50.0%
CCTTGTTCCAACCGTTCCTA+TGG + chr1.1:60018297-60018316 MS.gene005120:CDS 50.0%
GAAAAAGGATAGCCCTCGGT+CGG - chr1.1:60020142-60020161 None:intergenic 50.0%
GAAAGTCCTGCAGAAGCAGA+AGG - chr1.1:60019300-60019319 None:intergenic 50.0%
GACGAAATCCTAGACCTCAG+TGG + chr1.1:60020065-60020084 MS.gene005120:intron 50.0%
GAGGATGACCAGGATGTTAC+GGG + chr1.1:60019393-60019412 MS.gene005120:CDS 50.0%
GCATGGAATTGTCGGGGTAT+AGG + chr1.1:60019632-60019651 MS.gene005120:intron 50.0%
GCCAAAGTGAAGCATGTTGC+TGG + chr1.1:60019243-60019262 MS.gene005120:CDS 50.0%
GCGCTGAGGATATGTCAGTA+TGG + chr1.1:60020455-60020474 MS.gene005120:intron 50.0%
GGACAACCCCAGGTTGTATA+CGG - chr1.1:60018630-60018649 None:intergenic 50.0%
GGGACAGATAGGAAAACGAG+TGG - chr1.1:60018278-60018297 None:intergenic 50.0%
GGTGAGCAAGAGTCTCACTT+AGG - chr1.1:60019721-60019740 None:intergenic 50.0%
GGTTACTATGGCTATCCCGA+TGG + chr1.1:60019929-60019948 MS.gene005120:intron 50.0%
GGTTCAGGTCGACAGATGTA+GGG - chr1.1:60018651-60018670 None:intergenic 50.0%
GTAACAAGGTCCTTGAACCC+CGG - chr1.1:60020382-60020401 None:intergenic 50.0%
GTCATGGACCGTATACAACC+TGG + chr1.1:60018619-60018638 MS.gene005120:CDS 50.0%
GTCCTACCAAACAGTGATCG+AGG - chr1.1:60018411-60018430 None:intergenic 50.0%
GTTGGAACAAGGGGACAGAT+AGG - chr1.1:60018289-60018308 None:intergenic 50.0%
GTTTGTCTCGGCACAACAGA+TGG - chr1.1:60019081-60019100 None:intergenic 50.0%
TACAATGCTCCCCTACACCT+CGG + chr1.1:60020305-60020324 MS.gene005120:intron 50.0%
TACTATGGCTATCCCGATGG+AGG + chr1.1:60019932-60019951 MS.gene005120:intron 50.0%
TAGTTTCAGACTCAGTGGCG+AGG - chr1.1:60018381-60018400 None:intergenic 50.0%
TCACTTGTAAACGGAGCAGC+AGG - chr1.1:60019366-60019385 None:intergenic 50.0%
TCAGCTTCCACACTCATCAC+AGG + chr1.1:60019318-60019337 MS.gene005120:CDS 50.0%
TCATTTACCTAGGCAGGCCT+GGG - chr1.1:60019604-60019623 None:intergenic 50.0%
TGACTGTGTGCTTACGGCTA+GGG - chr1.1:60018216-60018235 None:intergenic 50.0%
TGAGGAATCTGAGGATGACC+AGG + chr1.1:60019383-60019402 MS.gene005120:CDS 50.0%
TGCCTATTTCAGCGAGCGTA+TGG + chr1.1:60018459-60018478 MS.gene005120:CDS 50.0%
TGCTGCTCCGTTTACAAGTG+AGG + chr1.1:60019365-60019384 MS.gene005120:CDS 50.0%
TGGGCCATCATCAAGAACAC+GGG - chr1.1:60018575-60018594 None:intergenic 50.0%
TGGTTCAGGTCGACAGATGT+AGG - chr1.1:60018652-60018671 None:intergenic 50.0%
TGTCTTCCTATAGACCGCAC+CGG + chr1.1:60019785-60019804 MS.gene005120:intron 50.0%
TTCATTTACCTAGGCAGGCC+TGG - chr1.1:60019605-60019624 None:intergenic 50.0%
TTGTCAGATGTTCCGACCGA+GGG + chr1.1:60020127-60020146 MS.gene005120:intron 50.0%
! AATGGCAGGTTCTGATACCC+AGG + chr1.1:60019584-60019603 MS.gene005120:intron 50.0%
! ATGCATGGCATTTGGAACCG+GGG + chr1.1:60020362-60020381 MS.gene005120:intron 50.0%
! ATTTGCTGCTGATGGGGATG+GGG + chr1.1:60019473-60019492 MS.gene005120:CDS 50.0%
! CACGGGCAGCATCCATTTTA+TGG - chr1.1:60018558-60018577 None:intergenic 50.0%
! CATTTGCTGCTGATGGGGAT+GGG + chr1.1:60019472-60019491 MS.gene005120:CDS 50.0%
! GAAGCAACCGGTTTCAGATC+AGG - chr1.1:60019012-60019031 None:intergenic 50.0%
! GACATCTGGGTTCAGGTTCA+TGG + chr1.1:60018676-60018695 MS.gene005120:CDS 50.0%
! GGGCAGCATCCATTTTATGG+TGG - chr1.1:60018555-60018574 None:intergenic 50.0%
! GTTCTGAACCCGTAACATCC+TGG - chr1.1:60019404-60019423 None:intergenic 50.0%
! TCATTTGCTGCTGATGGGGA+TGG + chr1.1:60019471-60019490 MS.gene005120:CDS 50.0%
! TTGCCCGGACTTGTTCGAAT+TGG + chr1.1:60018957-60018976 MS.gene005120:CDS 50.0%
! TTGGGGACCTGATCTGAAAC+CGG + chr1.1:60019002-60019021 MS.gene005120:CDS 50.0%
!! GTGTTCTTGATGATGGCCCA+TGG + chr1.1:60018575-60018594 MS.gene005120:CDS 50.0%
!!! GCGGGGGTCTAGCTTTATTT+TGG + chr1.1:60019813-60019832 MS.gene005120:intron 50.0%
ACAGATGTAGGGACAACCCC+AGG - chr1.1:60018640-60018659 None:intergenic 55.0%
ACTCATCACAGGTTGCCCAG+TGG + chr1.1:60019329-60019348 MS.gene005120:CDS 55.0%
CACATGCGGCTAGTGCATTC+AGG + chr1.1:60020538-60020557 MS.gene005120:intron 55.0%
CAGACTCAGTGGCGAGGTTT+AGG - chr1.1:60018375-60018394 None:intergenic 55.0%
CAGGTAAACCGAGCACCACT+GGG - chr1.1:60019347-60019366 None:intergenic 55.0%
CATGGTGCTTGGCGATTGAC+AGG + chr1.1:60019908-60019927 MS.gene005120:intron 55.0%
CCGGGCAAACCTTGTCTGAA+TGG - chr1.1:60018945-60018964 None:intergenic 55.0%
CCTAGTCCGGCACTTCAATC+CGG + chr1.1:60019685-60019704 MS.gene005120:intron 55.0%
CGGCTAGTGCATTCAGGAGA+TGG + chr1.1:60020544-60020563 MS.gene005120:intron 55.0%
CTCGGCACAACAGATGGGAT+AGG - chr1.1:60019075-60019094 None:intergenic 55.0%
CTGACTGTGTGCTTACGGCT+AGG - chr1.1:60018217-60018236 None:intergenic 55.0%
CTTCGCATACTCTTGGTCCG+AGG + chr1.1:60020422-60020441 MS.gene005120:CDS 55.0%
GAGAGGTTAGACCGTGCTCT+TGG + chr1.1:60020199-60020218 MS.gene005120:intron 55.0%
GAGGGATCCATAGGAACGGT+TGG - chr1.1:60018307-60018326 None:intergenic 55.0%
GCACTTCTACGACCTCCATC+GGG - chr1.1:60019947-60019966 None:intergenic 55.0%
GCTGCCCGTGTTCTTGATGA+TGG + chr1.1:60018568-60018587 MS.gene005120:CDS 55.0%
GGAGCTTGGGGAGTTTGTCT+CGG - chr1.1:60019093-60019112 None:intergenic 55.0%
GGCACTTCTACGACCTCCAT+CGG - chr1.1:60019948-60019967 None:intergenic 55.0%
TGGGCAACCTGTGATGAGTG+TGG - chr1.1:60019328-60019347 None:intergenic 55.0%
TTTGCTGCTGATGGGGATGG+GGG + chr1.1:60019474-60019493 MS.gene005120:CDS 55.0%
! GCATTTGGAACCGGGGTTCA+AGG + chr1.1:60020369-60020388 MS.gene005120:intron 55.0%
! TGTTACAGGTGCGGACTGCT+TGG + chr1.1:60018919-60018938 MS.gene005120:CDS 55.0%
!! CCGAGGGCTATCCTTTTTCG+TGG + chr1.1:60020143-60020162 MS.gene005120:intron 55.0%
ACAGGTTGCCCAGTGGTGCT+CGG + chr1.1:60019336-60019355 MS.gene005120:CDS 60.0%
AGCAGCAGGCATGGGAGCTT+GGG - chr1.1:60019106-60019125 None:intergenic 60.0%
ATGGCTCGTGCTTGGAAGCC+AGG + chr1.1:60018478-60018497 MS.gene005120:CDS 60.0%
CCTCTACCGGTGCGGTCTAT+AGG - chr1.1:60019794-60019813 None:intergenic 60.0%
CGTTTGTGGGATTGAGGCCG+AGG - chr1.1:60020325-60020344 None:intergenic 60.0%
GAGTCTTGGTACGTCGCGAG+CGG + chr1.1:60020171-60020190 MS.gene005120:intron 60.0%
GCAGGTAAACCGAGCACCAC+TGG - chr1.1:60019348-60019367 None:intergenic 60.0%
GCTGGCCGCAACTTTCATCC+AGG + chr1.1:60019123-60019142 MS.gene005120:CDS 60.0%
GGATTGAGGCCGAGGTGTAG+GGG - chr1.1:60020317-60020336 None:intergenic 60.0%
GGCCGCAACTTTCATCCAGG+TGG + chr1.1:60019126-60019145 MS.gene005120:CDS 60.0%
GGGATTGAGGCCGAGGTGTA+GGG - chr1.1:60020318-60020337 None:intergenic 60.0%
TCAGCGCACGCCGTTAACCT+CGG - chr1.1:60020442-60020461 None:intergenic 60.0%
TCTGATACCCAGGCCTGCCT+AGG + chr1.1:60019594-60019613 MS.gene005120:intron 60.0%
TGAAAGTTGCGGCCAGCAGC+AGG - chr1.1:60019120-60019139 None:intergenic 60.0%
TGGGATTGAGGCCGAGGTGT+AGG - chr1.1:60020319-60020338 None:intergenic 60.0%
! ATAGACCGCACCGGTAGAGG+CGG + chr1.1:60019794-60019813 MS.gene005120:intron 60.0%
! CCTATAGACCGCACCGGTAG+AGG + chr1.1:60019791-60019810 MS.gene005120:intron 60.0%
!! CCGGATTGAAGTGCCGGACT+AGG - chr1.1:60019688-60019707 None:intergenic 60.0%
!! GAGGTCGTAGAAGTGCCGCT+TGG + chr1.1:60019951-60019970 MS.gene005120:intron 60.0%
!! TCCAGGTGGTGCTGCTAGTG+CGG + chr1.1:60019140-60019159 MS.gene005120:CDS 60.0%
ACCGCACTAGCAGCACCACC+TGG - chr1.1:60019144-60019163 None:intergenic 65.0%
AGCTAGACCCCCGCCTCTAC+CGG - chr1.1:60019807-60019826 None:intergenic 65.0%
CAAGCTCCCATGCCTGCTGC+TGG + chr1.1:60019105-60019124 MS.gene005120:CDS 65.0%
CAGCAGCAGGCATGGGAGCT+TGG - chr1.1:60019107-60019126 None:intergenic 65.0%
GAGGTTAACGGCGTGCGCTG+AGG + chr1.1:60020441-60020460 MS.gene005120:CDS 65.0%
GCAGCAGGCATGGGAGCTTG+GGG - chr1.1:60019105-60019124 None:intergenic 65.0%
GCGAGCGTATGGCTCGTGCT+TGG + chr1.1:60018470-60018489 MS.gene005120:CDS 65.0%
TCTTGGTACGTCGCGAGCGG+TGG + chr1.1:60020174-60020193 MS.gene005120:intron 65.0%
TTGCGGCCAGCAGCAGGCAT+GGG - chr1.1:60019114-60019133 None:intergenic 65.0%
! TAGACCGCACCGGTAGAGGC+GGG + chr1.1:60019795-60019814 MS.gene005120:intron 65.0%
GTTGCGGCCAGCAGCAGGCA+TGG - chr1.1:60019115-60019134 None:intergenic 70.0%
TGGTACGTCGCGAGCGGTGG+AGG + chr1.1:60020177-60020196 MS.gene005120:intron 70.0%
! AGACCGCACCGGTAGAGGCG+GGG + chr1.1:60019796-60019815 MS.gene005120:intron 70.0%
CGTCGCGAGCGGTGGAGGAG+AGG + chr1.1:60020182-60020201 MS.gene005120:intron 75.0%
GACCCCCGCCTCTACCGGTG+CGG - chr1.1:60019802-60019821 None:intergenic 75.0%
! GACCGCACCGGTAGAGGCGG+GGG + chr1.1:60019797-60019816 MS.gene005120:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 60018172 60020584 60018172 ID=MS.gene005120
chr1.1 mRNA 60018172 60020584 60018172 ID=MS.gene005120.t1;Parent=MS.gene005120
chr1.1 exon 60018172 60019548 60018172 ID=MS.gene005120.t1.exon1;Parent=MS.gene005120.t1
chr1.1 CDS 60018172 60019548 60018172 ID=cds.MS.gene005120.t1;Parent=MS.gene005120.t1
chr1.1 exon 60020415 60020467 60020415 ID=MS.gene005120.t1.exon2;Parent=MS.gene005120.t1
chr1.1 CDS 60020415 60020467 60020415 ID=cds.MS.gene005120.t1;Parent=MS.gene005120.t1
chr1.1 exon 60020560 60020584 60020560 ID=MS.gene005120.t1.exon3;Parent=MS.gene005120.t1
chr1.1 CDS 60020560 60020584 60020560 ID=cds.MS.gene005120.t1;Parent=MS.gene005120.t1
Gene Sequence

>MS.gene005120

ATGTCAACAACAGTCTGCCCCATGCTTTCCCACATACAAAACCCTAGCCGTAAGCACACAGTCAGTGAGTCAAATCTTGTTCCTGGGTGTTTCAATTTTGTTTCCACTCGTTTTCCTATCTGTCCCCTTGTTCCAACCGTTCCTATGGATCCCTCAAGTCTCAATATTGCTGGTTTAACCATTGCTGAAGAGGGTTTAACCCTAAACCTCGCCACTGAGTCTGAAACTAACACCATCCTCGATCACTGTTTGGTAGGACGTGTTTTGGCTGATCGTGAGATTCAGGCTGCCTATTTCAGCGAGCGTATGGCTCGTGCTTGGAAGCCAGGCAAGCGAGTTTCTATTGTCAAAACTGATGGGGACCGTTTCCTTTTTCAGTTCCACCATAAAATGGATGCTGCCCGTGTTCTTGATGATGGCCCATGGCTGTATGATAATTTTCATATTGTCATGGACCGTATACAACCTGGGGTTGTCCCTACATCTGTCGACCTGAACCATATGGACATCTGGGTTCAGGTTCATGGTCTTCCTTTTTGTTGTAATCAGCCAAATGTTGGTCAGGGTATAGGTAGCTATCTAGGTGTCCTTAAAATCTATGATGACCGTAATACCATCCATAGCACTTATATGCGATTGAAAGTTCGTATTGATGTTACTGTCCCACTGAAAAAAGAGTGGAAAGTCCGTGTTAGTACTGGTGATTACGTTACTGTCAAATTTAAGTATGAGAAACTTGGTATTTTTTGTTACAGGTGCGGACTGCTTGGCCATTCAGACAAGGTTTGCCCGGACTTGTTCGAATTGGAAGCTGATGACGGAGTTCGTAATTGGGGACCTGATCTGAAACCGGTTGCTTCTCGTATTGGTTCAGCTGCCAATAACAAATGGCTTAAGGATCCTATCCCATCTGTTGTGCCGAGACAAACTCCCCAAGCTCCCATGCCTGCTGCTGGCCGCAACTTTCATCCAGGTGGTGCTGCTAGTGCGGTGACTTTCAATGATCGTATGCTAGCTGTTGATTCTCAGATTGCTGCTCTTAAAAATGATCTTCTTGCTGCTCAAAACCTCGCCAAAGTGAAGCATGTTGCTGGTGACAACCGTACCTGTCAAGTGCATCTTTTACCTTCTGCTTCTGCAGGACTTTCAGCTTCCACACTCATCACAGGTTGCCCAGTGGTGCTCGGTTTACCTGCTGCTCCGTTTACAAGTGAGGAATCTGAGGATGACCAGGATGTTACGGGTTCAGAACTTAAGAAGCGAAAGAGGATGATGACCCTTCAGAATGGTGCAATTACATCATTTGCTGCTGATGGGGATGGGGGAACTTTTGTAATAGGTTCAAATGTTAGTCAGGGGGGGGATACTGATATGAATGTAATCTCTAATCCATTGTATGATGACACTGATGTAATGGCAGGTTCTGATACCCAGGCCTGCCTAGGTAAATGAATCTAGTAGCATGGAATTGTCGGGGTATAGGTAGCCCGAGTGCAATTCCTGATCTTAAGTACCTAGTCCGGCACTTCAATCCGGATATTTTATTCCTAAGTGAGACTCTTGCTCACCGTAATAAAATTGAAGAACTCCGTTTTTTGCTTGGTTACGATTCTTGTCTTCCTATAGACCGCACCGGTAGAGGCGGGGGTCTAGCTTTATTTTGGCGCAATTCTTTGAACTGTCAGATTATTGATTTTTCTAATAACCATATTTCTATTGAGATTGTGGATTCTGTTCATGGTGCTTGGCGATTGACAGGTTACTATGGCTATCCCGATGGAGGTCGTAGAAGTGCCGCTTGGAACTTTCTCCGTCAACTCTCACATCAATTTACAGGCCCATGGTGCATATTTGGTGATTTCAACGACATCCTTGATGCTAGTGAGAAGAGAGGACGAAATCCTAGACCTCAGTGGCTTATTAATGGCTTTAGACAAGCGGTTATTGACTCTGGATTGTCAGATGTTCCGACCGAGGGCTATCCTTTTTCGTGGTTCAAGAGTCTTGGTACGTCGCGAGCGGTGGAGGAGAGGTTAGACCGTGCTCTTGGTAATAACTCTTGGTTTAATTTATTCCCCAATGCCATTGTTGAAACTATTGTTGCTCCTGCATCCGATCACTATCCTATTTTATTACAATGCTCCCCTACACCTCGGCCTCAATCCCACAAACGTAACTTCCGTTACGAAAATGCATGGCATTTGGAACCGGGGTTCAAGGACCTTGTTACTAACTCTTGGCAGGTGTATTCTTCGCATACTCTTGGTCCGAGGTTAACGGCGTGCGCTGAGGATATGTCAGTATGGCGGAAAACACATTGTCATCAGTTAAAATATGACATTGAAGAGTGCCGTAAACAACTTCATCACATGCGGCTAGTGCATTCAGGAGATGGTCAGGTACGAATGTTTGA

Protein sequence

>MS.gene005120.t1

MSTTVCPMLSHIQNPSRKHTVSESNLVPGCFNFVSTRFPICPLVPTVPMDPSSLNIAGLTIAEEGLTLNLATESETNTILDHCLVGRVLADREIQAAYFSERMARAWKPGKRVSIVKTDGDRFLFQFHHKMDAARVLDDGPWLYDNFHIVMDRIQPGVVPTSVDLNHMDIWVQVHGLPFCCNQPNVGQGIGSYLGVLKIYDDRNTIHSTYMRLKVRIDVTVPLKKEWKVRVSTGDYVTVKFKYEKLGIFCYRCGLLGHSDKVCPDLFELEADDGVRNWGPDLKPVASRIGSAANNKWLKDPIPSVVPRQTPQAPMPAAGRNFHPGGAASAVTFNDRMLAVDSQIAALKNDLLAAQNLAKVKHVAGDNRTCQVHLLPSASAGLSASTLITGCPVVLGLPAAPFTSEESEDDQDVTGSELKKRKRMMTLQNGAITSFAADGDGGTFVIGSNVSQGGDTDMNVYSSHTLGPRLTACAEDMRWSGTNV