AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055683

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055683.t1 MTR_6g046587 72.785 158 43 0 180 337 96 253 8.39e-83 253
MS.gene055683.t1 MTR_1g051330 71.154 156 45 0 192 347 213 368 3.77e-77 251
MS.gene055683.t1 MTR_0042s0130 55.488 164 73 0 178 341 83 246 3.57e-61 199
MS.gene055683.t1 MTR_2g055450 49.206 189 90 1 159 347 87 269 7.10e-60 198
MS.gene055683.t1 MTR_2g018005 53.012 166 78 0 177 342 65 230 1.60e-58 189
MS.gene055683.t1 MTR_2g078880 50.307 163 66 1 177 339 42 189 1.73e-52 172
MS.gene055683.t1 MTR_6g009010 46.746 169 74 1 177 345 66 218 9.82e-52 172
MS.gene055683.t1 MTR_1g100687 53.378 148 67 1 201 346 3 150 9.77e-48 161
MS.gene055683.t1 MTR_6g034715 46.377 138 74 0 207 344 1 138 5.90e-46 154
MS.gene055683.t1 MTR_4g020630 48.718 156 72 1 192 347 2 149 2.99e-44 159
MS.gene055683.t1 MTR_8g470880 48.611 144 74 0 198 341 359 502 3.98e-43 156
MS.gene055683.t1 MTR_6g034215 42.012 169 80 1 177 345 65 215 3.89e-41 147
MS.gene055683.t1 MTR_4g044433 40.136 147 79 1 141 287 9 146 1.30e-34 124
MS.gene055683.t1 MTR_0114s0080 50.476 105 52 0 231 335 20 124 4.28e-33 120
MS.gene055683.t1 MTR_3g044860 53.922 102 47 0 245 346 3 104 8.52e-32 121
MS.gene055683.t1 MTR_0093s0080 44.361 133 52 2 209 341 14 124 2.76e-30 113
MS.gene055683.t1 MTR_2g064335 43.609 133 65 1 213 345 14 136 6.44e-29 114
MS.gene055683.t1 MTR_8g463110 50.909 110 51 1 241 347 104 213 4.39e-25 106
MS.gene055683.t1 MTR_4g033730 45.455 99 54 0 209 307 40 138 4.30e-23 94.0
MS.gene055683.t1 MTR_8g069750 47.674 86 45 0 176 261 36 121 4.70e-23 97.4
MS.gene055683.t1 MTR_1g036710 68.254 63 20 0 177 239 234 296 2.62e-22 95.5
MS.gene055683.t1 MTR_1g054775 31.492 181 116 5 169 344 608 785 2.78e-19 89.7
MS.gene055683.t1 MTR_2g084625 41.111 90 51 1 212 299 12 101 5.92e-17 80.9
MS.gene055683.t1 MTR_7g080340 55.357 56 25 0 219 274 4 59 5.14e-16 72.0
MS.gene055683.t1 MTR_8g019640 49.206 63 32 0 232 294 3 65 1.01e-14 75.1
MS.gene055683.t1 MTR_1g036720 50.000 64 32 0 1 64 1 64 1.19e-13 67.0
MS.gene055683.t1 MTR_7g057470 29.545 176 101 7 176 344 275 434 1.38e-13 72.4
MS.gene055683.t1 MTR_7g057490 29.545 176 101 7 176 344 275 434 1.38e-13 72.4
MS.gene055683.t1 MTR_0112s0060 59.259 54 22 0 288 341 55 108 1.51e-13 67.0
MS.gene055683.t1 MTR_1g059490 29.139 151 106 1 183 333 269 418 8.56e-13 69.7
MS.gene055683.t1 MTR_8g442690 26.950 141 103 0 204 344 39 179 1.67e-12 68.6
MS.gene055683.t1 MTR_0032s0100 33.621 116 72 3 230 343 17 129 2.27e-12 65.5
MS.gene055683.t1 MTR_0001s0070 29.630 162 113 1 183 344 35 195 8.24e-12 64.3
MS.gene055683.t1 MTR_0111s0070 31.138 167 104 4 183 344 194 354 8.87e-12 66.6
MS.gene055683.t1 MTR_0123s0050 48.000 50 26 0 287 336 1 50 1.19e-11 60.5
MS.gene055683.t1 MTR_8g446890 40.698 86 47 1 228 313 3 84 1.27e-11 62.4
MS.gene055683.t1 MTR_4g122570 44.444 72 40 0 271 342 328 399 2.35e-11 65.1
MS.gene055683.t1 MTR_5g058210 29.375 160 112 1 183 342 35 193 4.18e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 100 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAATAATGGCTGAATTT+TGG 0.170936 1.4:+47528893 MS.gene055683:CDS
CGGCTCATCTGAAACGTTTC+CGG 0.294035 1.4:-47529544 None:intergenic
TGGCGCCTCACAGCTTTCTA+TGG 0.309857 1.4:+47530265 MS.gene055683:CDS
GCATTTATCCCCTCATGATT+TGG 0.320551 1.4:+47529689 MS.gene055683:CDS
CCTCCTCGTCGCTCAATGAT+AGG 0.330178 1.4:-47528762 None:intergenic
TCCCTTCTTCTCCCATGTTC+AGG 0.336971 1.4:-47530292 None:intergenic
CTGATATTACTAGAGGTTCT+TGG 0.351225 1.4:+47530245 MS.gene055683:CDS
CTCTGCGATCTCCCTCTTAC+TGG 0.352367 1.4:+47530475 MS.gene055683:CDS
ATGGGAGAAGAAGGGATTCT+TGG 0.361790 1.4:+47530299 MS.gene055683:CDS
GCTGTTAAACAACGCAATTC+CGG 0.367480 1.4:+47529450 MS.gene055683:CDS
GTACATGATGTCAGAAATAA+TGG 0.370311 1.4:+47528882 MS.gene055683:CDS
CAGATGATGGAATTCGTCAT+TGG 0.378782 1.4:+47529412 MS.gene055683:intron
GGCCCTCCTCTCTTATCAGC+AGG 0.405538 1.4:-47530397 None:intergenic
TCATGATTTGGCTTTAATTG+AGG 0.416657 1.4:+47529701 MS.gene055683:CDS
AGATGATGGAATTCGTCATT+GGG 0.434367 1.4:+47529413 MS.gene055683:intron
TGTTTAACAGCTCTGATCTC+AGG 0.444714 1.4:-47529438 None:intergenic
GACGAACCTTGGTGTGTCAT+AGG 0.445257 1.4:+47530352 MS.gene055683:CDS
TGACGAGTGCTCTATCTAAA+CGG 0.445673 1.4:-47530549 None:intergenic
TGTTGACACAAGTGCAAGTC+TGG 0.447628 1.4:+47528825 MS.gene055683:CDS
ATGAGCCAGGGAGGTCGGTC+AGG 0.449546 1.4:-47530418 None:intergenic
GTATATTGATAGCCAGTAAG+AGG 0.452732 1.4:-47530487 None:intergenic
TTGGAAACCACGAATGAGCC+AGG 0.462142 1.4:-47530431 None:intergenic
ATGGTTGCGCGAGGAAGGGC+AGG 0.467489 1.4:+47529485 MS.gene055683:CDS
TGAGGCTTTCGTCAAGGGAC+AGG 0.468879 1.4:-47530664 None:intergenic
ATCCTGAACATGGGAGAAGA+AGG 0.469689 1.4:+47530290 MS.gene055683:CDS
CTTAACTGATAAACCTGTCC+GGG 0.472304 1.4:+47528858 MS.gene055683:CDS
TGGGAGAAGAAGGGATTCTT+GGG 0.475867 1.4:+47530300 MS.gene055683:CDS
GACGAGTGCTCTATCTAAAC+GGG 0.478417 1.4:-47530548 None:intergenic
CGACCTCCCTGGCTCATTCG+TGG 0.480882 1.4:+47530424 MS.gene055683:CDS
ATGTCTGCAGCGTCGCTTGA+GGG 0.483268 1.4:-47530594 None:intergenic
CTTGTGTCAACAGACAGGTT+TGG 0.490182 1.4:-47528814 None:intergenic
CAAGTGCAAGTCTGGTGGGC+AGG 0.491076 1.4:+47528833 MS.gene055683:CDS
GAGCACTCGTCACCGTGTCC+TGG 0.497493 1.4:+47530560 MS.gene055683:CDS
TCAAGATGGTTGCGCGAGGA+AGG 0.497878 1.4:+47529480 MS.gene055683:CDS
TACAGTCATTAACCGCATCT+TGG 0.499346 1.4:-47530450 None:intergenic
GAGGGCCTGACCGACCTCCC+TGG 0.501189 1.4:+47530413 MS.gene055683:CDS
TTACTGGCTATCAATATACT+TGG 0.502551 1.4:+47530491 MS.gene055683:CDS
TCTTAACTGATAAACCTGTC+CGG 0.505500 1.4:+47528857 MS.gene055683:CDS
AAGGGACAGGTTCCATCTGC+AGG 0.511302 1.4:-47530651 None:intergenic
CGGTACTAATCAAGCAAAAG+AGG 0.514775 1.4:+47530525 MS.gene055683:CDS
TGAGCAATAATGAGGCAGAT+AGG 0.515880 1.4:+47529667 MS.gene055683:CDS
TTAAACAACGCAATTCCGGC+AGG 0.518190 1.4:+47529454 MS.gene055683:CDS
CACTCCTCTCCTCCTGCAGA+TGG 0.520805 1.4:+47530639 MS.gene055683:CDS
GCCTCATTATTGCTCACTGA+TGG 0.521422 1.4:-47529660 None:intergenic
TGAATCATTACCTGTCAAAA+CGG 0.522703 1.4:+47529596 MS.gene055683:CDS
GCCCTCCTCTCTTATCAGCA+GGG 0.531966 1.4:-47530396 None:intergenic
TGCGCGAGGAAGGGCAGGAG+TGG 0.538007 1.4:+47529490 MS.gene055683:CDS
AAACAACGCAATTCCGGCAG+GGG 0.540267 1.4:+47529456 MS.gene055683:CDS
GCTTGACTGTTACTGTTCGA+CGG 0.541042 1.4:-47529564 None:intergenic
TTCTATGGATATCCTGAACA+TGG 0.543329 1.4:+47530280 MS.gene055683:CDS
TTGCACTTGTGTCAACAGAC+AGG 0.544426 1.4:-47528819 None:intergenic
ACCTCTAGTAATATCAGTGA+TGG 0.545895 1.4:-47530239 None:intergenic
TGCTACTAAGAGAACGAAGA+AGG 0.557213 1.4:-47530324 None:intergenic
CAATGATAGGTTCGACATTG+AGG 0.566524 1.4:-47528749 None:intergenic
CACGAATGAGCCAGGGAGGT+CGG 0.568430 1.4:-47530423 None:intergenic
TATACTTGGTTTAAGAGCAT+CGG 0.568674 1.4:+47530505 MS.gene055683:CDS
AGAGGAGTGTGATCAGACAT+AGG 0.571502 1.4:-47530625 None:intergenic
CAACCATCTTGATCCCCTGC+CGG 0.572858 1.4:-47529469 None:intergenic
GGTTCCATCTGCAGGAGGAG+AGG 0.572946 1.4:-47530643 None:intergenic
ACTGATGGCCTAAGTAAATG+AGG 0.574236 1.4:-47529645 None:intergenic
TTGAGGGAATAAATCATGCC+AGG 0.576130 1.4:-47530578 None:intergenic
CATTCGTGGTTTCCAAGATG+CGG 0.581340 1.4:+47530438 MS.gene055683:CDS
CAAGATGGTTGCGCGAGGAA+GGG 0.581974 1.4:+47529481 MS.gene055683:CDS
TCAATTAAAGCCAAATCATG+AGG 0.582481 1.4:-47529699 None:intergenic
TCATCCAAACCAATTCAAAA+CGG 0.586691 1.4:+47529739 MS.gene055683:CDS
CCCTCCTCTCTTATCAGCAG+GGG 0.587796 1.4:-47530395 None:intergenic
AATGTCTGCAGCGTCGCTTG+AGG 0.590022 1.4:-47530595 None:intergenic
GAATAAATCATGCCAGGACA+CGG 0.593999 1.4:-47530572 None:intergenic
GCCATCAGTGAGCAATAATG+AGG 0.596544 1.4:+47529659 MS.gene055683:CDS
TATATTGATAGCCAGTAAGA+GGG 0.598775 1.4:-47530486 None:intergenic
TCCCCTGCTGATAAGAGAGG+AGG 0.599550 1.4:+47530394 MS.gene055683:CDS
TTTCTGACATCATGTACCCC+CGG 0.603068 1.4:-47528876 None:intergenic
TAGGTTCGACATTGAGGCCA+TGG 0.603627 1.4:-47528743 None:intergenic
CCCCTGCTGATAAGAGAGGA+GGG 0.605048 1.4:+47530395 MS.gene055683:CDS
ATTCCGGCAGGGGATCAAGA+TGG 0.607655 1.4:+47529466 MS.gene055683:CDS
TAAACAACGCAATTCCGGCA+GGG 0.608864 1.4:+47529455 MS.gene055683:CDS
GATGATGGAATTCGTCATTG+GGG 0.612179 1.4:+47529414 MS.gene055683:intron
CAATTAAAGCCAAATCATGA+GGG 0.617171 1.4:-47529698 None:intergenic
TCCTGAACATGGGAGAAGAA+GGG 0.621686 1.4:+47530291 MS.gene055683:CDS
GTAGCATGTCTGACGAACCT+TGG 0.625777 1.4:+47530341 MS.gene055683:CDS
TTATCCCCTGCTGATAAGAG+AGG 0.632396 1.4:+47530391 MS.gene055683:CDS
AAACCAATTCAAAACGGTCA+AGG 0.632615 1.4:+47529745 MS.gene055683:CDS
GACACAAGTGCAAGTCTGGT+GGG 0.637367 1.4:+47528829 MS.gene055683:CDS
CCTATCATTGAGCGACGAGG+AGG 0.639034 1.4:+47528762 MS.gene055683:CDS
TCCATCACTGATATTACTAG+AGG 0.646508 1.4:+47530238 MS.gene055683:CDS
TGGAAACCACGAATGAGCCA+GGG 0.652587 1.4:-47530430 None:intergenic
TGACACAAGTGCAAGTCTGG+TGG 0.658374 1.4:+47528828 MS.gene055683:CDS
GTGGTGGTATTGCTATTCTG+TGG 0.665982 1.4:+47530161 MS.gene055683:intron
TCTATGGATATCCTGAACAT+GGG 0.668399 1.4:+47530281 MS.gene055683:CDS
AATTAAAGCCAAATCATGAG+GGG 0.672765 1.4:-47529697 None:intergenic
TTAACTGATAAACCTGTCCG+GGG 0.674952 1.4:+47528859 MS.gene055683:CDS
GGACAGGTTCCATCTGCAGG+AGG 0.677597 1.4:-47530648 None:intergenic
CAGTAAGAGGGAGATCGCAG+AGG 0.679050 1.4:-47530474 None:intergenic
GGGATCAAGATGGTTGCGCG+AGG 0.683106 1.4:+47529476 MS.gene055683:CDS
AAATCGCCTATGACACACCA+AGG 0.684736 1.4:-47530358 None:intergenic
ATGATGGAATTCGTCATTGG+GGG 0.695600 1.4:+47529415 MS.gene055683:CDS
AAACCACGAATGAGCCAGGG+AGG 0.714843 1.4:-47530427 None:intergenic
GAACCTATCATTGAGCGACG+AGG 0.742728 1.4:+47528759 MS.gene055683:CDS
TAACTGATAAACCTGTCCGG+GGG 0.765140 1.4:+47528860 MS.gene055683:CDS
GATATCCATAGAAAGCTGTG+AGG 0.780746 1.4:-47530270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAATGTGAATAGGTT+TGG - chr1.4:47528955-47528974 None:intergenic 20.0%
!! GGAAAAATTTAAATGTGAAT+AGG - chr1.4:47528960-47528979 None:intergenic 20.0%
! TCAAAAATCCTCATTTACTT+AGG + chr1.4:47529637-47529656 MS.gene055683:CDS 25.0%
!! GATAACAACCTTTTAATACT+TGG + chr1.4:47529027-47529046 MS.gene055683:intron 25.0%
!!! ATTTTTGAGTAAATCAGCAA+GGG - chr1.4:47529625-47529644 None:intergenic 25.0%
AATTAAAGCCAAATCATGAG+GGG - chr1.4:47529700-47529719 None:intergenic 30.0%
CAATGCAATCTACAGAAAAA+TGG - chr1.4:47530135-47530154 None:intergenic 30.0%
CAATTAAAGCCAAATCATGA+GGG - chr1.4:47529701-47529720 None:intergenic 30.0%
CTAATCTTTCGTATTTGAAG+CGG - chr1.4:47529320-47529339 None:intergenic 30.0%
GTACATGATGTCAGAAATAA+TGG + chr1.4:47528882-47528901 MS.gene055683:CDS 30.0%
TATTGCACAAAGTTTCAGAA+AGG - chr1.4:47530069-47530088 None:intergenic 30.0%
TCAATTAAAGCCAAATCATG+AGG - chr1.4:47529702-47529721 None:intergenic 30.0%
TCATCCAAACCAATTCAAAA+CGG + chr1.4:47529739-47529758 MS.gene055683:CDS 30.0%
TGAATCATTACCTGTCAAAA+CGG + chr1.4:47529596-47529615 MS.gene055683:CDS 30.0%
! CAGAAATAATGGCTGAATTT+TGG + chr1.4:47528893-47528912 MS.gene055683:CDS 30.0%
! CATTTTTCTGTAGATTGCAT+TGG + chr1.4:47530133-47530152 MS.gene055683:intron 30.0%
! TATACTTGGTTTAAGAGCAT+CGG + chr1.4:47530505-47530524 MS.gene055683:CDS 30.0%
! TATATTGATAGCCAGTAAGA+GGG - chr1.4:47530489-47530508 None:intergenic 30.0%
! TTACTGGCTATCAATATACT+TGG + chr1.4:47530491-47530510 MS.gene055683:CDS 30.0%
!! AGGACAGAGTATTTTCTAAA+AGG - chr1.4:47529896-47529915 None:intergenic 30.0%
!! TATTCTGTTGATTCAGATGA+TGG + chr1.4:47529399-47529418 MS.gene055683:intron 30.0%
!! TCATGATTTGGCTTTAATTG+AGG + chr1.4:47529701-47529720 MS.gene055683:CDS 30.0%
!!! CTCTACCAAGCATTTTTTAT+CGG + chr1.4:47529914-47529933 MS.gene055683:intron 30.0%
!!! GATTTTTGAGTAAATCAGCA+AGG - chr1.4:47529626-47529645 None:intergenic 30.0%
!!! GGTAATTTTTGCTATTACTG+TGG + chr1.4:47529339-47529358 MS.gene055683:intron 30.0%
AAAACAGTTCAAACCATCTC+AGG + chr1.4:47529202-47529221 MS.gene055683:intron 35.0%
AAAATGGTTATCGAAGCCAA+TGG - chr1.4:47530119-47530138 None:intergenic 35.0%
AAACAGTTCAAACCATCTCA+GGG + chr1.4:47529203-47529222 MS.gene055683:intron 35.0%
AAACCAATTCAAAACGGTCA+AGG + chr1.4:47529745-47529764 MS.gene055683:CDS 35.0%
ACCTCTAGTAATATCAGTGA+TGG - chr1.4:47530242-47530261 None:intergenic 35.0%
AGCCAATGGAATACTTCAAA+TGG - chr1.4:47530105-47530124 None:intergenic 35.0%
ATGTCACTAAATCACTCAAG+AGG + chr1.4:47529253-47529272 MS.gene055683:intron 35.0%
CGATAAAAAATGCTTGGTAG+AGG - chr1.4:47529916-47529935 None:intergenic 35.0%
CGCTTCAAATACGAAAGATT+AGG + chr1.4:47529318-47529337 MS.gene055683:intron 35.0%
CTGATATTACTAGAGGTTCT+TGG + chr1.4:47530245-47530264 MS.gene055683:CDS 35.0%
GAAGGACACCAAGTATTAAA+AGG - chr1.4:47529038-47529057 None:intergenic 35.0%
GCCAATGGAATACTTCAAAT+GGG - chr1.4:47530104-47530123 None:intergenic 35.0%
GGTTTCATGACAGAAAAAGT+GGG + chr1.4:47529132-47529151 MS.gene055683:intron 35.0%
GTTCCAAGCTAAAACATTCA+TGG - chr1.4:47529969-47529988 None:intergenic 35.0%
TCAGAAAGGATAACAATGTC+CGG - chr1.4:47530055-47530074 None:intergenic 35.0%
TCATGTACTTGAATCCAGAA+CGG - chr1.4:47529102-47529121 None:intergenic 35.0%
TCATTCTCCTGCAAAAAACT+CGG + chr1.4:47529836-47529855 MS.gene055683:intron 35.0%
TCCATCACTGATATTACTAG+AGG + chr1.4:47530238-47530257 MS.gene055683:CDS 35.0%
TCTATGGATATCCTGAACAT+GGG + chr1.4:47530281-47530300 MS.gene055683:CDS 35.0%
TCTTAACTGATAAACCTGTC+CGG + chr1.4:47528857-47528876 MS.gene055683:CDS 35.0%
TTCTATGGATATCCTGAACA+TGG + chr1.4:47530280-47530299 MS.gene055683:CDS 35.0%
TTTGCTGAGATATCTCCATT+GGG - chr1.4:47529872-47529891 None:intergenic 35.0%
! AATTTTTGCGACATGACAGA+TGG - chr1.4:47529522-47529541 None:intergenic 35.0%
! AGGTTGTTATCAAAGTACCA+AGG - chr1.4:47529018-47529037 None:intergenic 35.0%
! GTATATTGATAGCCAGTAAG+AGG - chr1.4:47530490-47530509 None:intergenic 35.0%
! TCCCATTTGAAGTATTCCAT+TGG + chr1.4:47530100-47530119 MS.gene055683:intron 35.0%
! TTTTGCTGAGATATCTCCAT+TGG - chr1.4:47529873-47529892 None:intergenic 35.0%
!! AGATGATGGAATTCGTCATT+GGG + chr1.4:47529413-47529432 MS.gene055683:intron 35.0%
!! TTGACCGTTTTGAATTGGTT+TGG - chr1.4:47529746-47529765 None:intergenic 35.0%
!!! AAGCCATGAATGTTTTAGCT+TGG + chr1.4:47529963-47529982 MS.gene055683:intron 35.0%
AAGAAGATTAAACGTCCAGG+AGG + chr1.4:47529279-47529298 MS.gene055683:intron 40.0%
ACTGATGGCCTAAGTAAATG+AGG - chr1.4:47529648-47529667 None:intergenic 40.0%
ATGCAAACCATCCTGAAGAA+AGG + chr1.4:47528991-47529010 MS.gene055683:intron 40.0%
ATGGACTTGGGTAACTTCAT+AGG + chr1.4:47529156-47529175 MS.gene055683:intron 40.0%
CAAGTACATGATCTTCCAGT+GGG + chr1.4:47529111-47529130 MS.gene055683:intron 40.0%
CAATGATAGGTTCGACATTG+AGG - chr1.4:47528752-47528771 None:intergenic 40.0%
CAGAAGAAGATTAAACGTCC+AGG + chr1.4:47529276-47529295 MS.gene055683:intron 40.0%
CATGACAGAAAAAGTGGGAA+TGG + chr1.4:47529137-47529156 MS.gene055683:intron 40.0%
CGGTACTAATCAAGCAAAAG+AGG + chr1.4:47530525-47530544 MS.gene055683:CDS 40.0%
CTCTGCCGATAAAAAATGCT+TGG - chr1.4:47529922-47529941 None:intergenic 40.0%
CTTAACTGATAAACCTGTCC+GGG + chr1.4:47528858-47528877 MS.gene055683:CDS 40.0%
GAACTGCCTTAACATTTCCA+AGG - chr1.4:47530000-47530019 None:intergenic 40.0%
GAATAAATCATGCCAGGACA+CGG - chr1.4:47530575-47530594 None:intergenic 40.0%
GATATCCATAGAAAGCTGTG+AGG - chr1.4:47530273-47530292 None:intergenic 40.0%
GCATTTATCCCCTCATGATT+TGG + chr1.4:47529689-47529708 MS.gene055683:CDS 40.0%
GCTAAAACATTCATGGCTTC+CGG - chr1.4:47529962-47529981 None:intergenic 40.0%
GCTGTTAAACAACGCAATTC+CGG + chr1.4:47529450-47529469 MS.gene055683:CDS 40.0%
GGGTTTCATGACAGAAAAAG+TGG + chr1.4:47529131-47529150 MS.gene055683:intron 40.0%
GTCATGTCGCAAAAATTCAC+CGG + chr1.4:47529525-47529544 MS.gene055683:CDS 40.0%
TACAGTCATTAACCGCATCT+TGG - chr1.4:47530453-47530472 None:intergenic 40.0%
TCAAGTACATGATCTTCCAG+TGG + chr1.4:47529110-47529129 MS.gene055683:intron 40.0%
TCTCCTGCAGAATCTTTGAA+GGG + chr1.4:47529789-47529808 MS.gene055683:intron 40.0%
TGACGAGTGCTCTATCTAAA+CGG - chr1.4:47530552-47530571 None:intergenic 40.0%
TGAGATATCTCCATTGGGAT+GGG - chr1.4:47529867-47529886 None:intergenic 40.0%
TGAGCAATAATGAGGCAGAT+AGG + chr1.4:47529667-47529686 MS.gene055683:CDS 40.0%
TGCAAACCATCCTGAAGAAA+GGG + chr1.4:47528992-47529011 MS.gene055683:intron 40.0%
TGCTACTAAGAGAACGAAGA+AGG - chr1.4:47530327-47530346 None:intergenic 40.0%
TTAACTGATAAACCTGTCCG+GGG + chr1.4:47528859-47528878 MS.gene055683:CDS 40.0%
TTATATGCGCATTCGTGTGT+TGG + chr1.4:47529227-47529246 MS.gene055683:intron 40.0%
TTCTCCTGCAGAATCTTTGA+AGG + chr1.4:47529788-47529807 MS.gene055683:intron 40.0%
TTGAGGGAATAAATCATGCC+AGG - chr1.4:47530581-47530600 None:intergenic 40.0%
! AGAAAAAGTGGGAATGGACT+TGG + chr1.4:47529143-47529162 MS.gene055683:intron 40.0%
! ATGATGGAATTCGTCATTGG+GGG + chr1.4:47529415-47529434 MS.gene055683:CDS 40.0%
! GAAAAAGTGGGAATGGACTT+GGG + chr1.4:47529144-47529163 MS.gene055683:intron 40.0%
! TCAGGATGGTTTGCATATCA+CGG - chr1.4:47528987-47529006 None:intergenic 40.0%
! TGTTTAACAGCTCTGATCTC+AGG - chr1.4:47529441-47529460 None:intergenic 40.0%
! TTTTCTGTCATGAAACCCAC+TGG - chr1.4:47529129-47529148 None:intergenic 40.0%
!! AATGGCTGAATTTTGGCATC+CGG + chr1.4:47528900-47528919 MS.gene055683:CDS 40.0%
!! CAGATGATGGAATTCGTCAT+TGG + chr1.4:47529412-47529431 MS.gene055683:intron 40.0%
!! GATGATGGAATTCGTCATTG+GGG + chr1.4:47529414-47529433 MS.gene055683:intron 40.0%
!! TGACCTTGACCGTTTTGAAT+TGG - chr1.4:47529751-47529770 None:intergenic 40.0%
!!! GAGTTTTTTGCAGGAGAATG+AGG - chr1.4:47529837-47529856 None:intergenic 40.0%
AAATCGCCTATGACACACCA+AGG - chr1.4:47530361-47530380 None:intergenic 45.0%
ACGAACGAGGTCTTTGATAC+AGG - chr1.4:47530023-47530042 None:intergenic 45.0%
AGATATCTCCATTGGGATGG+GGG - chr1.4:47529865-47529884 None:intergenic 45.0%
ATCCTGAACATGGGAGAAGA+AGG + chr1.4:47530290-47530309 MS.gene055683:CDS 45.0%
ATGGGAGAAGAAGGGATTCT+TGG + chr1.4:47530299-47530318 MS.gene055683:CDS 45.0%
CATTCGTGGTTTCCAAGATG+CGG + chr1.4:47530438-47530457 MS.gene055683:CDS 45.0%
CCTCGTTCGTGTCTATAAAC+CGG + chr1.4:47530033-47530052 MS.gene055683:intron 45.0%
CCTTAACATTTCCAAGGCCT+CGG - chr1.4:47529994-47530013 None:intergenic 45.0%
CGAACGAGGTCTTTGATACA+GGG - chr1.4:47530022-47530041 None:intergenic 45.0%
CTGAGATATCTCCATTGGGA+TGG - chr1.4:47529868-47529887 None:intergenic 45.0%
CTTGTGTCAACAGACAGGTT+TGG - chr1.4:47528817-47528836 None:intergenic 45.0%
GACGAGTGCTCTATCTAAAC+GGG - chr1.4:47530551-47530570 None:intergenic 45.0%
GAGATATCTCCATTGGGATG+GGG - chr1.4:47529866-47529885 None:intergenic 45.0%
GCCATCAGTGAGCAATAATG+AGG + chr1.4:47529659-47529678 MS.gene055683:CDS 45.0%
GCCTCATTATTGCTCACTGA+TGG - chr1.4:47529663-47529682 None:intergenic 45.0%
GCTTGACTGTTACTGTTCGA+CGG - chr1.4:47529567-47529586 None:intergenic 45.0%
TAAACAACGCAATTCCGGCA+GGG + chr1.4:47529455-47529474 MS.gene055683:CDS 45.0%
TAACTGATAAACCTGTCCGG+GGG + chr1.4:47528860-47528879 MS.gene055683:CDS 45.0%
TCCTGAACATGGGAGAAGAA+GGG + chr1.4:47530291-47530310 MS.gene055683:CDS 45.0%
TGCTATTACTGTGGCCTACT+GGG + chr1.4:47529348-47529367 MS.gene055683:intron 45.0%
TGGGAGAAGAAGGGATTCTT+GGG + chr1.4:47530300-47530319 MS.gene055683:CDS 45.0%
TGTTGACACAAGTGCAAGTC+TGG + chr1.4:47528825-47528844 MS.gene055683:CDS 45.0%
TTAAACAACGCAATTCCGGC+AGG + chr1.4:47529454-47529473 MS.gene055683:CDS 45.0%
TTATCCCCTGCTGATAAGAG+AGG + chr1.4:47530391-47530410 MS.gene055683:CDS 45.0%
TTGATGTTAACCCCTCTACC+CGG - chr1.4:47528922-47528941 None:intergenic 45.0%
TTGCACTTGTGTCAACAGAC+AGG - chr1.4:47528822-47528841 None:intergenic 45.0%
TTTCTGACATCATGTACCCC+CGG - chr1.4:47528879-47528898 None:intergenic 45.0%
! AGAGGAGTGTGATCAGACAT+AGG - chr1.4:47530628-47530647 None:intergenic 45.0%
! CTCCTGCAGAATCTTTGAAG+GGG + chr1.4:47529790-47529809 MS.gene055683:intron 45.0%
! GTAGATTGCATTGGTCGTAG+TGG + chr1.4:47530142-47530161 MS.gene055683:intron 45.0%
! GTGGTGGTATTGCTATTCTG+TGG + chr1.4:47530161-47530180 MS.gene055683:intron 45.0%
! TGGTTTGCATATCACGGTAG+TGG - chr1.4:47528981-47529000 None:intergenic 45.0%
! TTGCTATTACTGTGGCCTAC+TGG + chr1.4:47529347-47529366 MS.gene055683:intron 45.0%
! TTTTGCGACATGACAGATGG+TGG - chr1.4:47529519-47529538 None:intergenic 45.0%
!! AATTTTGGCATCCGGGTAGA+GGG + chr1.4:47528908-47528927 MS.gene055683:intron 45.0%
!! ATGGCTGAATTTTGGCATCC+GGG + chr1.4:47528901-47528920 MS.gene055683:CDS 45.0%
!!! CATTTTTTATCGGCAGAGCC+TGG + chr1.4:47529924-47529943 MS.gene055683:intron 45.0%
AAACAACGCAATTCCGGCAG+GGG + chr1.4:47529456-47529475 MS.gene055683:CDS 50.0%
AAACATTCATGGCTTCCGGC+AGG - chr1.4:47529958-47529977 None:intergenic 50.0%
AATCCTCGACATGTCCCAGT+AGG - chr1.4:47529365-47529384 None:intergenic 50.0%
AGTACCAAGGCCCTTTCTTC+AGG - chr1.4:47529005-47529024 None:intergenic 50.0%
CCGAGGCCTTGGAAATGTTA+AGG + chr1.4:47529991-47530010 MS.gene055683:intron 50.0%
CCGGTTTATAGACACGAACG+AGG - chr1.4:47530036-47530055 None:intergenic 50.0%
CTTTGTGGAGGGGAATTGTC+AGG - chr1.4:47529060-47529079 None:intergenic 50.0%
GAACCTATCATTGAGCGACG+AGG + chr1.4:47528759-47528778 MS.gene055683:CDS 50.0%
GACACAAGTGCAAGTCTGGT+GGG + chr1.4:47528829-47528848 MS.gene055683:CDS 50.0%
GACCCCTTCAAAGATTCTGC+AGG - chr1.4:47529795-47529814 None:intergenic 50.0%
GATATCTCCATTGGGATGGG+GGG - chr1.4:47529864-47529883 None:intergenic 50.0%
GATTAAACGTCCAGGAGGAG+AGG + chr1.4:47529284-47529303 MS.gene055683:intron 50.0%
GATTGGAGTGGGATGCTTTG+TGG - chr1.4:47529075-47529094 None:intergenic 50.0%
GTAGCATGTCTGACGAACCT+TGG + chr1.4:47530341-47530360 MS.gene055683:CDS 50.0%
TATGCGCATTCGTGTGTTGG+TGG + chr1.4:47529230-47529249 MS.gene055683:intron 50.0%
TCCCTTCTTCTCCCATGTTC+AGG - chr1.4:47530295-47530314 None:intergenic 50.0%
TGACACAAGTGCAAGTCTGG+TGG + chr1.4:47528828-47528847 MS.gene055683:CDS 50.0%
TGCGCATATAAGCCCTGAGA+TGG - chr1.4:47529218-47529237 None:intergenic 50.0%
TGGAAACCACGAATGAGCCA+GGG - chr1.4:47530433-47530452 None:intergenic 50.0%
TTGGAAACCACGAATGAGCC+AGG - chr1.4:47530434-47530453 None:intergenic 50.0%
! CGGCTCATCTGAAACGTTTC+CGG - chr1.4:47529547-47529566 None:intergenic 50.0%
! GACGAACCTTGGTGTGTCAT+AGG + chr1.4:47530352-47530371 MS.gene055683:CDS 50.0%
! GATTGCATTGGTCGTAGTGG+TGG + chr1.4:47530145-47530164 MS.gene055683:intron 50.0%
!! AGAACGGCACTGATTGGAGT+GGG - chr1.4:47529086-47529105 None:intergenic 50.0%
!! ATTTTGGCATCCGGGTAGAG+GGG + chr1.4:47528909-47528928 MS.gene055683:intron 50.0%
!! GAATCCAGAACGGCACTGAT+TGG - chr1.4:47529092-47529111 None:intergenic 50.0%
!! GAATTTTGGCATCCGGGTAG+AGG + chr1.4:47528907-47528926 MS.gene055683:intron 50.0%
!! GCAAGGGAAACCGTTTTGAC+AGG - chr1.4:47529609-47529628 None:intergenic 50.0%
!!! GTTTTAGCTTGGAACTGCCG+AGG + chr1.4:47529974-47529993 MS.gene055683:intron 50.0%
AAACCACGAATGAGCCAGGG+AGG - chr1.4:47530430-47530449 None:intergenic 55.0%
AAGGGACAGGTTCCATCTGC+AGG - chr1.4:47530654-47530673 None:intergenic 55.0%
AATGTCTGCAGCGTCGCTTG+AGG - chr1.4:47530598-47530617 None:intergenic 55.0%
ACACTTCTTGCCTCTCCTCC+TGG - chr1.4:47529297-47529316 None:intergenic 55.0%
ATGTCTGCAGCGTCGCTTGA+GGG - chr1.4:47530597-47530616 None:intergenic 55.0%
ATTCCGGCAGGGGATCAAGA+TGG + chr1.4:47529466-47529485 MS.gene055683:CDS 55.0%
CAACCATCTTGATCCCCTGC+CGG - chr1.4:47529472-47529491 None:intergenic 55.0%
CAAGATGGTTGCGCGAGGAA+GGG + chr1.4:47529481-47529500 MS.gene055683:CDS 55.0%
CAGTAAGAGGGAGATCGCAG+AGG - chr1.4:47530477-47530496 None:intergenic 55.0%
CCAAGGCCCTTTCTTCAGGA+TGG - chr1.4:47529001-47529020 None:intergenic 55.0%
CCATCCTGAAGAAAGGGCCT+TGG + chr1.4:47528998-47529017 MS.gene055683:intron 55.0%
CCCCTGCTGATAAGAGAGGA+GGG + chr1.4:47530395-47530414 MS.gene055683:CDS 55.0%
CCCTCCTCTCTTATCAGCAG+GGG - chr1.4:47530398-47530417 None:intergenic 55.0%
CCTATCATTGAGCGACGAGG+AGG + chr1.4:47528762-47528781 MS.gene055683:CDS 55.0%
CCTCCTCGTCGCTCAATGAT+AGG - chr1.4:47528765-47528784 None:intergenic 55.0%
CTCTGCGATCTCCCTCTTAC+TGG + chr1.4:47530475-47530494 MS.gene055683:CDS 55.0%
GAGTGGGATGCTTTGTGGAG+GGG - chr1.4:47529070-47529089 None:intergenic 55.0%
GCCCTCCTCTCTTATCAGCA+GGG - chr1.4:47530399-47530418 None:intergenic 55.0%
GGAGTGGGATGCTTTGTGGA+GGG - chr1.4:47529071-47529090 None:intergenic 55.0%
GTGGAGGGGAATTGTCAGGA+AGG - chr1.4:47529056-47529075 None:intergenic 55.0%
TCAAGATGGTTGCGCGAGGA+AGG + chr1.4:47529480-47529499 MS.gene055683:CDS 55.0%
TCCCCTGCTGATAAGAGAGG+AGG + chr1.4:47530394-47530413 MS.gene055683:CDS 55.0%
TGGAGTGGGATGCTTTGTGG+AGG - chr1.4:47529072-47529091 None:intergenic 55.0%
TGGCGCCTCACAGCTTTCTA+TGG + chr1.4:47530265-47530284 MS.gene055683:CDS 55.0%
! CACTCCAATCAGTGCCGTTC+TGG + chr1.4:47529085-47529104 MS.gene055683:intron 55.0%
!! CAGAACGGCACTGATTGGAG+TGG - chr1.4:47529087-47529106 None:intergenic 55.0%
CACGAATGAGCCAGGGAGGT+CGG - chr1.4:47530426-47530445 None:intergenic 60.0%
CACTCCTCTCCTCCTGCAGA+TGG + chr1.4:47530639-47530658 MS.gene055683:CDS 60.0%
GACATCATGTACCCCCGGAC+AGG - chr1.4:47528874-47528893 None:intergenic 60.0%
GGACAGGTTCCATCTGCAGG+AGG - chr1.4:47530651-47530670 None:intergenic 60.0%
GGCCCTCCTCTCTTATCAGC+AGG - chr1.4:47530400-47530419 None:intergenic 60.0%
GGGATCAAGATGGTTGCGCG+AGG + chr1.4:47529476-47529495 MS.gene055683:CDS 60.0%
GGTTCCATCTGCAGGAGGAG+AGG - chr1.4:47530646-47530665 None:intergenic 60.0%
TGGCCTACTGGGACATGTCG+AGG + chr1.4:47529359-47529378 MS.gene055683:intron 60.0%
! CAAGTGCAAGTCTGGTGGGC+AGG + chr1.4:47528833-47528852 MS.gene055683:CDS 60.0%
!!! GGGGGAGCCGAGTTTTTTGC+AGG - chr1.4:47529846-47529865 None:intergenic 60.0%
ATCGGCAGAGCCTGGCACAC+AGG + chr1.4:47529932-47529951 MS.gene055683:intron 65.0%
ATGAGCCAGGGAGGTCGGTC+AGG - chr1.4:47530421-47530440 None:intergenic 65.0%
ATGGTTGCGCGAGGAAGGGC+AGG + chr1.4:47529485-47529504 MS.gene055683:CDS 65.0%
CGACCTCCCTGGCTCATTCG+TGG + chr1.4:47530424-47530443 MS.gene055683:CDS 65.0%
GAGCACTCGTCACCGTGTCC+TGG + chr1.4:47530560-47530579 MS.gene055683:CDS 65.0%
GCTTGGAACTGCCGAGGCCT+TGG + chr1.4:47529980-47529999 MS.gene055683:intron 65.0%
AGCCTGGCACACAGGCCTGC+CGG + chr1.4:47529940-47529959 MS.gene055683:intron 70.0%
CTCGGCTCCCCCCATCCCAA+TGG + chr1.4:47529854-47529873 MS.gene055683:intron 70.0%
TGCGCGAGGAAGGGCAGGAG+TGG + chr1.4:47529490-47529509 MS.gene055683:CDS 70.0%
TTCCGGCAGGCCTGTGTGCC+AGG - chr1.4:47529945-47529964 None:intergenic 70.0%
GAGGGCCTGACCGACCTCCC+TGG + chr1.4:47530413-47530432 MS.gene055683:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 47528745 47530675 47528745 ID=MS.gene055683
chr1.4 mRNA 47528745 47530675 47528745 ID=MS.gene055683.t1;Parent=MS.gene055683
chr1.4 exon 47528745 47528922 47528745 ID=MS.gene055683.t1.exon1;Parent=MS.gene055683.t1
chr1.4 CDS 47528745 47528922 47528745 ID=cds.MS.gene055683.t1;Parent=MS.gene055683.t1
chr1.4 exon 47529415 47529766 47529415 ID=MS.gene055683.t1.exon2;Parent=MS.gene055683.t1
chr1.4 CDS 47529415 47529766 47529415 ID=cds.MS.gene055683.t1;Parent=MS.gene055683.t1
chr1.4 exon 47530162 47530675 47530162 ID=MS.gene055683.t1.exon3;Parent=MS.gene055683.t1
chr1.4 CDS 47530162 47530675 47530162 ID=cds.MS.gene055683.t1;Parent=MS.gene055683.t1
Gene Sequence

>MS.gene055683

ATGGCCTCAATGTCGAACCTATCATTGAGCGACGAGGAGGACGAACTTGAAATACAAATTGACGATGCTCCAAACCTGTCTGTTGACACAAGTGCAAGTCTGGTGGGCAGGTTCTTAACTGATAAACCTGTCCGGGGGTACATGATGTCAGAAATAATGGCTGAATTTTGGCATCCGGGTAGAGGGGTTAACATCAAAGAAATTGAGCCAAACCTATTCACATTTAAATTTTTCCACTACCGTGATATGCAAACCATCCTGAAGAAAGGGCCTTGGTACTTTGATAACAACCTTTTAATACTTGGTGTCCTTCCTGACAATTCCCCTCCACAAAGCATCCCACTCCAATCAGTGCCGTTCTGGATTCAAGTACATGATCTTCCAGTGGGTTTCATGACAGAAAAAGTGGGAATGGACTTGGGTAACTTCATAGGTGAATTTCTTGAGTATGATGCAAAAAACAGTTCAAACCATCTCAGGGCTTATATGCGCATTCGTGTGTTGGTGGATGTCACTAAATCACTCAAGAGGCAGAAGAAGATTAAACGTCCAGGAGGAGAGGCAAGAAGTGTCCGCTTCAAATACGAAAGATTAGGTAATTTTTGCTATTACTGTGGCCTACTGGGACATGTCGAGGATTATTGCGACAAACTCTATTCTGTTGATTCAGATGATGGAATTCGTCATTGGGGGCCTGAGATCAGAGCTGTTAAACAACGCAATTCCGGCAGGGGATCAAGATGGTTGCGCGAGGAAGGGCAGGAGTGGTTGCCACCATCTGTCATGTCGCAAAAATTCACCGGAAACGTTTCAGATGAGCCGTCGAACAGTAACAGTCAAGCATTAACTACTGAATCATTACCTGTCAAAACGGTTTCCCTTGCTGATTTACTCAAAAATCCTCATTTACTTAGGCCATCAGTGAGCAATAATGAGGCAGATAGGCATTTATCCCCTCATGATTTGGCTTTAATTGAGGAACAAAATGCAACTGTCATCCAAACCAATTCAAAACGGTCAAGGTCAGAATTGAATGCAATTATTTCTCCTGCAGAATCTTTGAAGGGGTCAACACATCAGTCTGCATTACCTCATTCTCCTGCAAAAAACTCGGCTCCCCCCATCCCAATGGAGATATCTCAGCAAAACCTTTTAGAAAATACTCTGTCCTCTACCAAGCATTTTTTATCGGCAGAGCCTGGCACACAGGCCTGCCGGAAGCCATGAATGTTTTAGCTTGGAACTGCCGAGGCCTTGGAAATGTTAAGGCAGTTCCCTGTATCAAAGACCTCGTTCGTGTCTATAAACCGGACATTGTTATCCTTTCTGAAACTTTGTGCAATAATAATAAAATTTCCCATTTGAAGTATTCCATTGGCTTCGATAACCATTTTTCTGTAGATTGCATTGGTCGTAGTGGTGGTATTGCTATTCTGTGGAGAAACTCAGCTCACTGTTCTATTCTTAACTACTCTCAGAACTTTATTAATATGTCCATCACTGATATTACTAGAGGTTCTTGGCGCCTCACAGCTTTCTATGGATATCCTGAACATGGGAGAAGAAGGGATTCTTGGGACCTTCTTCGTTCTCTTAGTAGCATGTCTGACGAACCTTGGTGTGTCATAGGCGATTTTAATGATCACTTATCCCCTGCTGATAAGAGAGGAGGGCCTGACCGACCTCCCTGGCTCATTCGTGGTTTCCAAGATGCGGTTAATGACTGTAGCCTCTGCGATCTCCCTCTTACTGGCTATCAATATACTTGGTTTAAGAGCATCGGTACTAATCAAGCAAAAGAGGCCCGTTTAGATAGAGCACTCGTCACCGTGTCCTGGCATGATTTATTCCCTCAAGCGACGCTGCAGACATTAGTTGCTCCTATGTCTGATCACACTCCTCTCCTCCTGCAGATGGAACCTGTCCCTTGA
Protein sequence

>MS.gene055683.t1

MASMSNLSLSDEEDELEIQIDDAPNLSVDTSASLVGRFLTDKPVRGYMMSEIMAEFWHPDDGIRHWGPEIRAVKQRNSGRGSRWLREEGQEWLPPSVMSQKFTGNVSDEPSNSNSQALTTESLPVKTVSLADLLKNPHLLRPSVSNNEADRHLSPHDLALIEEQNATVIQTNSKRSSGGIAILWRNSAHCSILNYSQNFINMSITDITRGSWRLTAFYGYPEHGRRRDSWDLLRSLSSMSDEPWCVIGDFNDHLSPADKRGGPDRPPWLIRGFQDAVNDCSLCDLPLTGYQYTWFKSIGTNQAKEARLDRALVTVSWHDLFPQATLQTLVAPMSDHTPLLLQMEPVP