AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96541

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96541.t1 MTR_3g053920 56.918 318 51 4 1 288 1 262 2.94e-103 311
MS.gene96541.t1 MTR_8g463110 67.089 158 49 1 338 492 197 354 3.26e-68 231
MS.gene96541.t1 MTR_8g463110 66.981 106 19 1 249 338 1 106 1.41e-30 126
MS.gene96541.t1 MTR_4g020630 57.500 160 65 1 338 494 133 292 9.64e-59 202
MS.gene96541.t1 MTR_2g061500 65.116 129 16 1 1 100 1 129 3.82e-48 163
MS.gene96541.t1 MTR_6g034215 57.258 124 50 1 338 458 201 324 3.76e-41 150
MS.gene96541.t1 MTR_4g103530 67.778 90 28 1 33 122 9 97 5.60e-38 138
MS.gene96541.t1 MTR_4g103530 49.333 75 36 2 213 285 119 193 1.20e-11 64.3
MS.gene96541.t1 MTR_7g063500 60.000 85 34 0 398 482 38 122 6.72e-30 114
MS.gene96541.t1 MTR_5g069440 44.248 113 59 2 380 491 33 142 9.07e-25 100
MS.gene96541.t1 MTR_7g011710 61.333 75 28 1 36 110 12 85 3.56e-24 99.0
MS.gene96541.t1 MTR_7g056813 57.647 85 34 1 398 482 8 90 1.07e-23 103
MS.gene96541.t1 MTR_3g044860 41.176 119 41 2 338 453 89 181 6.12e-22 96.7
MS.gene96541.t1 MTR_1g100687 46.392 97 49 1 338 431 135 231 1.25e-21 94.0
MS.gene96541.t1 MTR_6g033215 30.994 171 78 2 31 161 124 294 1.54e-21 95.1
MS.gene96541.t1 MTR_2g063055 36.036 111 71 0 376 486 68 178 1.30e-18 84.0
MS.gene96541.t1 MTR_0010s0370 30.508 177 75 4 8 139 4 177 6.59e-18 82.0
MS.gene96541.t1 MTR_0010s0350 30.508 177 75 4 8 139 4 177 6.59e-18 82.0
MS.gene96541.t1 MTR_1g051330 31.447 159 93 3 338 494 352 496 2.54e-16 82.4
MS.gene96541.t1 MTR_7g015270 60.606 66 22 1 433 494 75 140 1.88e-15 76.3
MS.gene96541.t1 MTR_7g033160 45.000 60 33 0 433 492 2 61 1.76e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96541.t1 AT2G17920 26.638 229 151 4 38 254 70 293 5.34e-20 91.3
MS.gene96541.t1 AT3G31430 30.464 151 90 3 38 177 165 311 1.78e-17 84.0
MS.gene96541.t1 AT3G57587 28.191 188 119 4 4 178 35 219 2.12e-17 84.3
MS.gene96541.t1 AT5G36228 29.381 194 116 3 13 187 37 228 2.64e-17 84.0
MS.gene96541.t1 AT2G13450 30.464 151 92 2 38 177 70 218 6.07e-17 83.2
MS.gene96541.t1 AT2G41590 28.289 152 96 2 38 178 70 219 4.91e-16 80.1
MS.gene96541.t1 AT5G18636 28.947 152 95 2 38 178 70 219 6.70e-16 79.7
MS.gene96541.t1 AT5G25200 28.947 152 95 2 38 178 70 219 9.74e-16 79.3
MS.gene96541.t1 AT2G02103 28.947 152 95 2 38 178 70 219 1.53e-15 79.0
MS.gene96541.t1 AT3G42140 27.972 143 80 3 36 178 52 171 7.81e-15 75.1
MS.gene96541.t1 AT3G47920 27.778 144 91 2 46 178 7 148 4.76e-13 70.5

Find 140 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCCCAAGATGATGCTTAT+TGG 0.220662 5.1:-42612891 MS.gene96541:CDS
CTTTGAACCACATAGACTTT+TGG 0.271111 5.1:-42614824 MS.gene96541:CDS
ACGTCCATCATACGACTTAA+AGG 0.275279 5.1:+42614728 None:intergenic
CCTATGCCTTGACCTACTTT+TGG 0.279092 5.1:+42614765 None:intergenic
TCCTCTTCAACAGGTAATTC+AGG 0.294512 5.1:-42614192 MS.gene96541:intron
CACCTTCAGCAGTTTCATTT+CGG 0.308163 5.1:+42614361 None:intergenic
TGATTGCAATGATTTGATTC+TGG 0.312324 5.1:+42614301 None:intergenic
CAAGTTCATGGCTTACCCTT+TGG 0.333361 5.1:-42614798 MS.gene96541:CDS
AGACATACGCTCGCTGAAAT+AGG 0.339311 5.1:+42615025 None:intergenic
CAGGTTCAGAAGCAAGGTTT+AGG 0.340461 5.1:+42615114 None:intergenic
CTGACGACGGTGTCCGCAAT+TGG 0.341514 5.1:-42614503 MS.gene96541:CDS
CTGTTCCAAGTTTCAATGAT+AGG 0.352715 5.1:-42614335 MS.gene96541:CDS
GGAGCAAGGTTAACATAAAT+AGG 0.359720 5.1:+42613198 None:intergenic
TGATGTTCTTGCTGCTCAAC+TGG 0.363734 5.1:-42614274 MS.gene96541:CDS
GAGTCTGCAGCAGTAGTAAA+AGG 0.381125 5.1:+42614114 None:intergenic
GTATCGATGTTAAGGCTATT+AGG 0.381619 5.1:+42615164 None:intergenic
TGACGACGGTGTCCGCAATT+GGG 0.383854 5.1:-42614502 MS.gene96541:CDS
GGCAAAGACACACTGGTATA+AGG 0.386088 5.1:-42612860 MS.gene96541:CDS
GGTAAATCGTATTATTTCTC+TGG 0.391122 5.1:-42612785 MS.gene96541:CDS
AGATTGTCGTAAACAGTTGC+AGG 0.395288 5.1:-42612986 MS.gene96541:CDS
GTATGGCGCGGCACAGCAGC+TGG 0.398040 5.1:+42614408 None:intergenic
GTCCTTGAACATTGTCTGAT+TGG 0.405168 5.1:-42615080 MS.gene96541:CDS
TAACTTTAAATATGAAAAGC+TGG 0.406564 5.1:-42614598 MS.gene96541:CDS
AGGTTCAGAAGCAAGGTTTA+GGG 0.410535 5.1:+42615115 None:intergenic
CTGGTGCTTGGACTGCCTGC+TGG 0.413675 5.1:-42614144 MS.gene96541:CDS
AAATGCGTGGCATCTTGAAC+CGG 0.415553 5.1:-42613142 MS.gene96541:CDS
ACAAAAGTGGGAACGACACC+AGG 0.428323 5.1:+42614849 None:intergenic
AACCCTCCTCAGACAGGGTA+AGG 0.429706 5.1:+42615141 None:intergenic
TCTACTCCGCCTCTGGTGCT+TGG 0.429714 5.1:-42614156 MS.gene96541:CDS
GTCGCCAATAAGCATCATCT+TGG 0.432725 5.1:+42612887 None:intergenic
GTCAAAGCAAAACAAGCTGC+TGG 0.437669 5.1:-42614249 MS.gene96541:intron
CCTGCTTTCTACTCCGCCTC+TGG 0.438931 5.1:-42614163 MS.gene96541:CDS
GCATCTTGAACCGGGCTTCA+AGG 0.441535 5.1:-42613133 MS.gene96541:CDS
GGGTTAAACCCTCCTCAGAC+AGG 0.460583 5.1:+42615135 None:intergenic
GGGTAAGGGTATCGATGTTA+AGG 0.465754 5.1:+42615156 None:intergenic
AGGAGCTTGTTACTAACTCT+TGG 0.468658 5.1:-42613113 MS.gene96541:CDS
TACCTTCTTCCGCGCTGAAG+CGG 0.469131 5.1:+42612804 None:intergenic
TGATGCTTATTGGCGACAAC+GGG 0.470807 5.1:-42612881 MS.gene96541:CDS
AAGCAGCAGCAACATTTGTA+TGG 0.481774 5.1:+42614391 None:intergenic
CTATCATTGAAACTTGGAAC+AGG 0.486203 5.1:+42614336 None:intergenic
TTCATGGCGCTTAGCAATGT+AGG 0.486513 5.1:+42613164 None:intergenic
CGCGGCACAGCAGCTGGGAT+AGG 0.489826 5.1:+42614414 None:intergenic
TCAAGGACAGCAGTGGTGTC+AGG 0.491658 5.1:+42615095 None:intergenic
TTTGCTGCTGATGGGGATGA+AGG 0.493858 5.1:-42614018 MS.gene96541:intron
GTGCGGAAGACATGTCTGTT+TGG 0.497346 5.1:-42613047 MS.gene96541:CDS
TGTCACAGGTGTGGATTGCT+CGG 0.497819 5.1:-42614567 MS.gene96541:CDS
GCAGACTCGCAAGAGGAAAC+CGG 0.498573 5.1:-42614099 MS.gene96541:CDS
TGCAACAAATAGGTGGATAC+AGG 0.498808 5.1:-42614439 MS.gene96541:CDS
GTGTGGATTGCTCGGACATA+CGG 0.498881 5.1:-42614559 MS.gene96541:CDS
TGCTACGCGTATGCGCATAT+AGG 0.499266 5.1:+42614689 None:intergenic
CAAAAGTCTATGTGGTTCAA+AGG 0.499773 5.1:+42614825 None:intergenic
GTAAAAGGAAACGGACCAGC+AGG 0.501080 5.1:+42614129 None:intergenic
TTGGTACTGCTGCAACAAAT+AGG 0.502007 5.1:-42614449 MS.gene96541:CDS
CAAGGCATAGGAAGTTCCTT+AGG 0.508331 5.1:-42614753 MS.gene96541:CDS
AACTTTAAATATGAAAAGCT+GGG 0.509761 5.1:-42614597 MS.gene96541:CDS
CCTCTTCAACAGGTAATTCA+GGG 0.515036 5.1:-42614191 MS.gene96541:intron
ACATACGGACAAGGTGTGTC+CGG 0.515722 5.1:-42614544 MS.gene96541:CDS
ATTTCTCTGGACGACGATGC+AGG 0.515952 5.1:-42612772 MS.gene96541:intron
GCAATGTAGGGCCGAGGTGT+GGG 0.516526 5.1:+42613177 None:intergenic
GTACCAACACGTTGCAAAGC+AGG 0.516840 5.1:+42614465 None:intergenic
CGCTTAGCAATGTAGGGCCG+AGG 0.519863 5.1:+42613171 None:intergenic
GACCAATCAGACAATGTTCA+AGG 0.520347 5.1:+42615078 None:intergenic
GCCATCCTATCATTGAAACT+TGG 0.520748 5.1:+42614330 None:intergenic
ATGAATTGTCACCATTCTGA+AGG 0.523788 5.1:+42614043 None:intergenic
GGATTTATCCAACCAAAAGT+AGG 0.525022 5.1:-42614777 MS.gene96541:CDS
ACACGCCACTCTTGTTTCAA+AGG 0.525117 5.1:+42614651 None:intergenic
TCATGGCGCTTAGCAATGTA+GGG 0.528238 5.1:+42613165 None:intergenic
AGCAATGTAGGGCCGAGGTG+TGG 0.528295 5.1:+42613176 None:intergenic
AAAAGTCTATGTGGTTCAAA+GGG 0.528923 5.1:+42614826 None:intergenic
GCTTGTTACTAACTCTTGGC+AGG 0.532960 5.1:-42613109 MS.gene96541:CDS
GTAACAAGCTCCTTGAAGCC+CGG 0.534119 5.1:+42613123 None:intergenic
GACGACGGTGTCCGCAATTG+GGG 0.534782 5.1:-42614501 MS.gene96541:CDS
CTGACTTGAAGAAAAGAAAG+AGG 0.535982 5.1:-42614074 MS.gene96541:CDS
AGACATGTCTTCCGCACAAG+AGG 0.537243 5.1:+42613053 None:intergenic
TCGCCAATAAGCATCATCTT+GGG 0.537347 5.1:+42612888 None:intergenic
TCCGCACAAGAGGAAAGCTT+CGG 0.537456 5.1:+42613063 None:intergenic
TACCCTTACCCTGTCTGAGG+AGG 0.539344 5.1:-42615144 MS.gene96541:CDS
GCAGGCAGTCCAAGCACCAG+AGG 0.539792 5.1:+42614147 None:intergenic
AATGTTGCTGCTGCTTCAGT+TGG 0.541041 5.1:-42614384 MS.gene96541:CDS
GCAGCAACATTTGTATGGCG+CGG 0.542401 5.1:+42614396 None:intergenic
GGCAGTCCAAGCACCAGAGG+CGG 0.547639 5.1:+42614150 None:intergenic
ATAGGATAGTGATCAGAAGC+AGG 0.548728 5.1:+42613216 None:intergenic
GTTAAGGCTATTAGGATCCA+TGG 0.554062 5.1:+42615172 None:intergenic
GTCATGGATCGGATTTCCCC+TGG 0.554596 5.1:-42614867 MS.gene96541:CDS
ACCCTTACCCTGTCTGAGGA+GGG 0.556687 5.1:-42615143 MS.gene96541:CDS
TTTGGTTGGATAAATCCAAA+GGG 0.556836 5.1:+42614783 None:intergenic
GCTTCCAACTCAAACAGCTC+CGG 0.558624 5.1:+42614525 None:intergenic
ATGATGCTTATTGGCGACAA+CGG 0.560749 5.1:-42612882 MS.gene96541:CDS
TCCAAGTTTCAATGATAGGA+TGG 0.561259 5.1:-42614331 MS.gene96541:CDS
CCAGAGGCGGAGTAGAAAGC+AGG 0.563408 5.1:+42614163 None:intergenic
CTTGAACCCAAAAGTCTATG+TGG 0.564385 5.1:+42614817 None:intergenic
CTTCGGAATAATAGTATGAG+TGG 0.566050 5.1:+42613080 None:intergenic
TATGGCGCGGCACAGCAGCT+GGG 0.566514 5.1:+42614409 None:intergenic
ATCCGCTTCAGCGCGGAAGA+AGG 0.566650 5.1:-42612806 MS.gene96541:CDS
ATACGACTTAAAGGTACCTA+AGG 0.568017 5.1:+42614737 None:intergenic
TCCGAAGCTTTCCTCTTGTG+CGG 0.568018 5.1:-42613064 MS.gene96541:CDS
AGGGCCGAGGTGTGGGAGCA+AGG 0.568444 5.1:+42613184 None:intergenic
GTGTCCGGAGCTGTTTGAGT+TGG 0.576270 5.1:-42614529 MS.gene96541:CDS
CAAAAGTACCATTGCTAGAG+CGG 0.577625 5.1:+42614628 None:intergenic
GCAGCAGTAGTAAAAGGAAA+CGG 0.578310 5.1:+42614120 None:intergenic
AATGCGTGGCATCTTGAACC+GGG 0.578326 5.1:-42613141 MS.gene96541:CDS
GTGGTTCAAAGGGACAAAAG+TGG 0.578672 5.1:+42614836 None:intergenic
TCGACTTGTTTCACATGGCG+AGG 0.578914 5.1:-42612959 MS.gene96541:CDS
AAGCCTGCTTTGCAACGTGT+TGG 0.578917 5.1:-42614468 MS.gene96541:CDS
TTAGGGTATAACATCAATGA+CGG 0.581730 5.1:+42612660 None:intergenic
ATCCAACCAAAAGTAGGTCA+AGG 0.581878 5.1:-42614771 MS.gene96541:CDS
TGGTGTCAGGTTCAGAAGCA+AGG 0.583392 5.1:+42615108 None:intergenic
TAGGGTATAACATCAATGAC+GGG 0.592926 5.1:+42612661 None:intergenic
TGGCGTGTCCGCTCTAGCAA+TGG 0.593204 5.1:-42614636 MS.gene96541:CDS
GCAGCCCGTGTTCTTGATGA+AGG 0.596679 5.1:-42614918 MS.gene96541:CDS
TGGTTCAAAGGGACAAAAGT+GGG 0.597285 5.1:+42614837 None:intergenic
TGAGATAAGCACCCCAATTG+CGG 0.598005 5.1:+42614490 None:intergenic
TACTGCTGCAGACTCGCAAG+AGG 0.598689 5.1:-42614106 MS.gene96541:CDS
AGGCGGAGTAGAAAGCAGGT+TGG 0.609570 5.1:+42614167 None:intergenic
AGGATGTTGACCCTTCAGAA+TGG 0.611730 5.1:-42614054 MS.gene96541:CDS
CCAAAAGTAGGTCAAGGCAT+AGG 0.620618 5.1:-42614765 MS.gene96541:CDS
ATTGAATCTCGCGATCAGCA+AGG 0.621915 5.1:+42615051 None:intergenic
ACCCTCCTCAGACAGGGTAA+GGG 0.622883 5.1:+42615142 None:intergenic
CTGTTCCTTTGAAACAAGAG+TGG 0.624809 5.1:-42614656 MS.gene96541:CDS
CAAAAGTGGGAACGACACCA+GGG 0.632351 5.1:+42614850 None:intergenic
TGAATTGTCACCATTCTGAA+GGG 0.634296 5.1:+42614044 None:intergenic
GTACTGCTGCAACAAATAGG+TGG 0.637449 5.1:-42614446 MS.gene96541:CDS
TGAAAATTATCATAAAGCCA+CGG 0.638162 5.1:+42614894 None:intergenic
GTGTTCTTGATGAAGGTCCG+TGG 0.639559 5.1:-42614911 MS.gene96541:CDS
CGATACCCTTACCCTGTCTG+AGG 0.641739 5.1:-42615147 MS.gene96541:CDS
CTAAGCGCCATGAAAATGCG+TGG 0.649508 5.1:-42613155 MS.gene96541:CDS
GAAACTCGACTTGTTTCACA+TGG 0.655519 5.1:-42612964 MS.gene96541:CDS
GACAACGGGCAAAGACACAC+TGG 0.656309 5.1:-42612867 MS.gene96541:CDS
GGTTAAACCCTCCTCAGACA+GGG 0.659380 5.1:+42615136 None:intergenic
CGGACCTTCATCAAGAACAC+GGG 0.663855 5.1:+42614914 None:intergenic
AAAAGTGGGAACGACACCAG+GGG 0.664971 5.1:+42614851 None:intergenic
ACGGACCTTCATCAAGAACA+CGG 0.665987 5.1:+42614913 None:intergenic
AATTGAGAAAACGTATGCAG+CGG 0.670184 5.1:-42612918 MS.gene96541:CDS
ATTGCTCGGACATACGGACA+AGG 0.677946 5.1:-42614553 MS.gene96541:CDS
AAGACACACTGGTATAAGGA+CGG 0.680609 5.1:-42612856 MS.gene96541:CDS
TTTGAGTTGGAAGCTGACGA+CGG 0.689742 5.1:-42614516 MS.gene96541:CDS
GGCCGAAATGAAACTGCTGA+AGG 0.693948 5.1:-42614363 MS.gene96541:CDS
TTAACCTTGCTCCCACACCT+CGG 0.706161 5.1:-42613188 MS.gene96541:CDS
ACAATGTTCAAGGACAGCAG+TGG 0.713296 5.1:+42615088 None:intergenic
TTCATGCATCCGCTTCAGCG+CGG 0.746501 5.1:-42612813 MS.gene96541:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATATCTTTTTTTAAATTG+TGG + chr5.1:42614836-42614855 None:intergenic 15.0%
!! AACTTTAAATATGAAAAGCT+GGG - chr5.1:42613246-42613265 MS.gene96541:intron 20.0%
!! TAACTTTAAATATGAAAAGC+TGG - chr5.1:42613245-42613264 MS.gene96541:intron 20.0%
!!! GAAGTTCTTCAATTTTATTT+TGG + chr5.1:42614092-42614111 None:intergenic 20.0%
!!! TTTTTTTAAATTGTGGCAAT+GGG + chr5.1:42614829-42614848 None:intergenic 20.0%
! AATAAAATCACTAATGCACA+AGG - chr5.1:42615095-42615114 MS.gene96541:CDS 25.0%
! CAACTTTCAAATCAATTTAC+AGG - chr5.1:42614336-42614355 MS.gene96541:CDS 25.0%
! TGAAAATTATCATAAAGCCA+CGG + chr5.1:42612952-42612971 None:intergenic 25.0%
!! TGATAATTTTCATATCGTCA+TGG - chr5.1:42612960-42612979 MS.gene96541:CDS 25.0%
!!! CTTTTTTTAAATTGTGGCAA+TGG + chr5.1:42614830-42614849 None:intergenic 25.0%
!!! GAAATTTTTGATAGTGTTCT+TGG - chr5.1:42614240-42614259 MS.gene96541:intron 25.0%
AAAAGTCTATGTGGTTCAAA+GGG + chr5.1:42613020-42613039 None:intergenic 30.0%
AAAGTTTCAACATAAGCAGT+TGG + chr5.1:42614600-42614619 None:intergenic 30.0%
AACTGCTTATGTTGAAACTT+TGG - chr5.1:42614599-42614618 MS.gene96541:CDS 30.0%
ATAGGAACAAATGTTAGTCA+TGG - chr5.1:42613858-42613877 MS.gene96541:intron 30.0%
GATGAAGGTAACAATGTAAT+AGG - chr5.1:42613840-42613859 MS.gene96541:intron 30.0%
GTTTGATGAAACTGATGTAA+TGG - chr5.1:42613916-42613935 MS.gene96541:intron 30.0%
TAGGAACAAATGTTAGTCAT+GGG - chr5.1:42613859-42613878 MS.gene96541:intron 30.0%
TCACTTAGGAATAAGATATC+CGG + chr5.1:42614057-42614076 None:intergenic 30.0%
TGATTGCAATGATTTGATTC+TGG + chr5.1:42613545-42613564 None:intergenic 30.0%
TTTGGTTGGATAAATCCAAA+GGG + chr5.1:42613063-42613082 None:intergenic 30.0%
! ATTTTCATATCGTCATGGAT+CGG - chr5.1:42612965-42612984 MS.gene96541:CDS 30.0%
! GGTAAATCGTATTATTTCTC+TGG - chr5.1:42615058-42615077 MS.gene96541:CDS 30.0%
! TTTGAACCACATAGACTTTT+GGG - chr5.1:42613020-42613039 MS.gene96541:CDS 30.0%
!! TTTTGGTTGGATAAATCCAA+AGG + chr5.1:42613064-42613083 None:intergenic 30.0%
!!! GAAGAACTTCGTTTTTTTCT+TGG - chr5.1:42614102-42614121 MS.gene96541:CDS 30.0%
AATTGAGAAAACGTATGCAG+CGG - chr5.1:42614925-42614944 MS.gene96541:CDS 35.0%
ACATCAGTTTCATCAAACAG+TGG + chr5.1:42613914-42613933 None:intergenic 35.0%
AGGAACAAATGTTAGTCATG+GGG - chr5.1:42613860-42613879 MS.gene96541:intron 35.0%
ATGAATTGTCACCATTCTGA+AGG + chr5.1:42613803-42613822 None:intergenic 35.0%
CAAAAGTCTATGTGGTTCAA+AGG + chr5.1:42613021-42613040 None:intergenic 35.0%
CATCAGTTTCATCAAACAGT+GGG + chr5.1:42613913-42613932 None:intergenic 35.0%
CTATCATTGAAACTTGGAAC+AGG + chr5.1:42613510-42613529 None:intergenic 35.0%
CTGTTCCAAGTTTCAATGAT+AGG - chr5.1:42613508-42613527 MS.gene96541:intron 35.0%
CTTCGGAATAATAGTATGAG+TGG + chr5.1:42614766-42614785 None:intergenic 35.0%
GGAGCAAGGTTAACATAAAT+AGG + chr5.1:42614648-42614667 None:intergenic 35.0%
GGATTTATCCAACCAAAAGT+AGG - chr5.1:42613066-42613085 MS.gene96541:CDS 35.0%
GGTTACTATGGTTATCCTAA+TGG - chr5.1:42614279-42614298 MS.gene96541:CDS 35.0%
TACTATGGTTATCCTAATGG+TGG - chr5.1:42614282-42614301 MS.gene96541:CDS 35.0%
TATCCCAAGATGATGCTTAT+TGG - chr5.1:42614952-42614971 MS.gene96541:intron 35.0%
TCCAAGTTTCAATGATAGGA+TGG - chr5.1:42613512-42613531 MS.gene96541:intron 35.0%
TGAATTGTCACCATTCTGAA+GGG + chr5.1:42613802-42613821 None:intergenic 35.0%
TTAAGGTCAGGAATTGTACT+CGG + chr5.1:42614012-42614031 None:intergenic 35.0%
TTCACATGGTTCAAAAGTCT+TGG - chr5.1:42614507-42614526 MS.gene96541:CDS 35.0%
TTGACGTAAAAAGTTCCAAG+CGG + chr5.1:42614319-42614338 None:intergenic 35.0%
! AATTCATCTTTTGCTGCTGA+TGG - chr5.1:42613816-42613835 MS.gene96541:intron 35.0%
! AGACTTTTGAACCATGTGAA+AGG + chr5.1:42614507-42614526 None:intergenic 35.0%
! ATTCATCTTTTGCTGCTGAT+GGG - chr5.1:42613817-42613836 MS.gene96541:intron 35.0%
! CTGACTTGAAGAAAAGAAAG+AGG - chr5.1:42613769-42613788 MS.gene96541:intron 35.0%
! CTTTGAACCACATAGACTTT+TGG - chr5.1:42613019-42613038 MS.gene96541:CDS 35.0%
! GACTTTTGAACCATGTGAAA+GGG + chr5.1:42614506-42614525 None:intergenic 35.0%
! GTATCGATGTTAAGGCTATT+AGG + chr5.1:42612682-42612701 None:intergenic 35.0%
! TCTTTTCTTCAAGTCAGATC+CGG + chr5.1:42613766-42613785 None:intergenic 35.0%
!! ATACGACTTAAAGGTACCTA+AGG + chr5.1:42613109-42613128 None:intergenic 35.0%
!! CAAATTTTTCAGCAGCAAAC+AGG - chr5.1:42615149-42615168 MS.gene96541:CDS 35.0%
!! TTGATAGTGTTCTTGGTTCT+TGG - chr5.1:42614247-42614266 MS.gene96541:intron 35.0%
AAGACACACTGGTATAAGGA+CGG - chr5.1:42614987-42615006 MS.gene96541:intron 40.0%
AAGCAGCAGCAACATTTGTA+TGG + chr5.1:42613455-42613474 None:intergenic 40.0%
ACGTCCATCATACGACTTAA+AGG + chr5.1:42613118-42613137 None:intergenic 40.0%
AGATATCCGGATTGAAGTGT+CGG + chr5.1:42614044-42614063 None:intergenic 40.0%
AGATTGTCGTAAACAGTTGC+AGG - chr5.1:42614857-42614876 MS.gene96541:CDS 40.0%
AGGTTCAGAAGCAAGGTTTA+GGG + chr5.1:42612731-42612750 None:intergenic 40.0%
ATAGGATAGTGATCAGAAGC+AGG + chr5.1:42614630-42614649 None:intergenic 40.0%
ATCCAACCAAAAGTAGGTCA+AGG - chr5.1:42613072-42613091 MS.gene96541:CDS 40.0%
ATGATGCTTATTGGCGACAA+CGG - chr5.1:42614961-42614980 MS.gene96541:intron 40.0%
CAAATCAATTTACAGGCCCT+TGG - chr5.1:42614343-42614362 MS.gene96541:CDS 40.0%
CACCTTCAGCAGTTTCATTT+CGG + chr5.1:42613485-42613504 None:intergenic 40.0%
CCTCTTCAACAGGTAATTCA+GGG - chr5.1:42613652-42613671 MS.gene96541:intron 40.0%
CTAAACTCATTTACCTAGGC+AGG + chr5.1:42613960-42613979 None:intergenic 40.0%
CTTGAACCCAAAAGTCTATG+TGG + chr5.1:42613029-42613048 None:intergenic 40.0%
GAACAAATGTTAGTCATGGG+GGG - chr5.1:42613862-42613881 MS.gene96541:intron 40.0%
GAATTACCTGTTGAAGAGGA+CGG + chr5.1:42613651-42613670 None:intergenic 40.0%
GACCAATCAGACAATGTTCA+AGG + chr5.1:42612768-42612787 None:intergenic 40.0%
GATGAAACTGATGTAATGGC+AGG - chr5.1:42613920-42613939 MS.gene96541:intron 40.0%
GCAGCAGTAGTAAAAGGAAA+CGG + chr5.1:42613726-42613745 None:intergenic 40.0%
GCCACTAAACTCATTTACCT+AGG + chr5.1:42613964-42613983 None:intergenic 40.0%
GCCATCCTATCATTGAAACT+TGG + chr5.1:42613516-42613535 None:intergenic 40.0%
GCCTAGGTAAATGAGTTTAG+TGG - chr5.1:42613960-42613979 MS.gene96541:intron 40.0%
GGAACAAATGTTAGTCATGG+GGG - chr5.1:42613861-42613880 MS.gene96541:intron 40.0%
GGTAAATGAGTTTAGTGGCT+TGG - chr5.1:42613965-42613984 MS.gene96541:intron 40.0%
GGTACCTTTAAGTCGTATGA+TGG - chr5.1:42613111-42613130 MS.gene96541:CDS 40.0%
GGTGGAACTGAAAGAGATAA+CGG + chr5.1:42612894-42612913 None:intergenic 40.0%
GTAACCTTCAATCGGAACAT+CGG + chr5.1:42614484-42614503 None:intergenic 40.0%
GTCCTTGAACATTGTCTGAT+TGG - chr5.1:42612763-42612782 MS.gene96541:intron 40.0%
GTGAAAGGGTAACCTTCAAT+CGG + chr5.1:42614492-42614511 None:intergenic 40.0%
TAAGGTCAGGAATTGTACTC+GGG + chr5.1:42614011-42614030 None:intergenic 40.0%
TCCTCTTCAACAGGTAATTC+AGG - chr5.1:42613651-42613670 MS.gene96541:intron 40.0%
TCGCCAATAAGCATCATCTT+GGG + chr5.1:42614958-42614977 None:intergenic 40.0%
TGCAACAAATAGGTGGATAC+AGG - chr5.1:42613404-42613423 MS.gene96541:intron 40.0%
TGGTTCAAAGGGACAAAAGT+GGG + chr5.1:42613009-42613028 None:intergenic 40.0%
TTATCCGATGTTCCGATTGA+AGG - chr5.1:42614477-42614496 MS.gene96541:CDS 40.0%
TTGAAGGTTACCCTTTCACA+TGG - chr5.1:42614493-42614512 MS.gene96541:CDS 40.0%
TTGGTACTGCTGCAACAAAT+AGG - chr5.1:42613394-42613413 MS.gene96541:intron 40.0%
! AGTGTCGGATTAGGTACTTA+AGG + chr5.1:42614029-42614048 None:intergenic 40.0%
! GAAACTCGACTTGTTTCACA+TGG - chr5.1:42614879-42614898 MS.gene96541:CDS 40.0%
! GTTTAGTGGCTTGGAATTGT+CGG - chr5.1:42613974-42613993 MS.gene96541:intron 40.0%
! TGGAGACTTACTGGTTACTA+TGG - chr5.1:42614267-42614286 MS.gene96541:CDS 40.0%
! TTCATCTTTTGCTGCTGATG+GGG - chr5.1:42613818-42613837 MS.gene96541:intron 40.0%
! TTTAGTGGCTTGGAATTGTC+GGG - chr5.1:42613975-42613994 MS.gene96541:intron 40.0%
!! AGGAGCTTGTTACTAACTCT+TGG - chr5.1:42614730-42614749 MS.gene96541:intron 40.0%
!! CAAAAGTACCATTGCTAGAG+CGG + chr5.1:42613218-42613237 None:intergenic 40.0%
!! CTGTTCCTTTGAAACAAGAG+TGG - chr5.1:42613187-42613206 MS.gene96541:CDS 40.0%
!!! GACTTTTGGGTTCAAGTTCA+TGG - chr5.1:42613033-42613052 MS.gene96541:CDS 40.0%
AAATCGCCGAAAATGCACCA+AGG + chr5.1:42614363-42614382 None:intergenic 45.0%
AAATGCGTGGCATCTTGAAC+CGG - chr5.1:42614701-42614720 MS.gene96541:intron 45.0%
AATCGCCGAAAATGCACCAA+GGG + chr5.1:42614362-42614381 None:intergenic 45.0%
ACAATGTTCAAGGACAGCAG+TGG + chr5.1:42612758-42612777 None:intergenic 45.0%
ACGGACCTTCATCAAGAACA+CGG + chr5.1:42612933-42612952 None:intergenic 45.0%
AGACATACGCTCGCTGAAAT+AGG + chr5.1:42612821-42612840 None:intergenic 45.0%
AGGACGGTAATAGATGTACC+AGG + chr5.1:42613635-42613654 None:intergenic 45.0%
AGGATGTTGACCCTTCAGAA+TGG - chr5.1:42613789-42613808 MS.gene96541:intron 45.0%
ATTGAATCTCGCGATCAGCA+AGG + chr5.1:42612795-42612814 None:intergenic 45.0%
CAAGGCATAGGAAGTTCCTT+AGG - chr5.1:42613090-42613109 MS.gene96541:CDS 45.0%
CAAGTTCATGGCTTACCCTT+TGG - chr5.1:42613045-42613064 MS.gene96541:CDS 45.0%
CAGAGTCAAGAACAGCTTGT+CGG + chr5.1:42614455-42614474 None:intergenic 45.0%
CAGGTTCAGAAGCAAGGTTT+AGG + chr5.1:42612732-42612751 None:intergenic 45.0%
CCAAAAGTAGGTCAAGGCAT+AGG - chr5.1:42613078-42613097 MS.gene96541:CDS 45.0%
CCCTGAATTACCTGTTGAAG+AGG + chr5.1:42613655-42613674 None:intergenic 45.0%
CCTAATCCGACACTTCAATC+CGG - chr5.1:42614035-42614054 MS.gene96541:CDS 45.0%
CTATTACCGTCCTCTTCAAC+AGG - chr5.1:42613642-42613661 MS.gene96541:intron 45.0%
GACAAGCTGTTCTTGACTCT+GGG - chr5.1:42614454-42614473 MS.gene96541:CDS 45.0%
GAGTCTGCAGCAGTAGTAAA+AGG + chr5.1:42613732-42613751 None:intergenic 45.0%
GCATTTCTACGACCACCATT+AGG + chr5.1:42614297-42614316 None:intergenic 45.0%
GCGATCTAACCTTTCTTCGA+CGG + chr5.1:42614544-42614563 None:intergenic 45.0%
GGCAAAGACACACTGGTATA+AGG - chr5.1:42614983-42615002 MS.gene96541:intron 45.0%
GTACTGCTGCAACAAATAGG+TGG - chr5.1:42613397-42613416 MS.gene96541:intron 45.0%
GTATGCGCATATAGGAGCTA+TGG + chr5.1:42613149-42613168 None:intergenic 45.0%
GTCAAAGCAAAACAAGCTGC+TGG - chr5.1:42613594-42613613 MS.gene96541:intron 45.0%
GTCGCCAATAAGCATCATCT+TGG + chr5.1:42614959-42614978 None:intergenic 45.0%
GTGGTTCAAAGGGACAAAAG+TGG + chr5.1:42613010-42613029 None:intergenic 45.0%
TCATGGCGCTTAGCAATGTA+GGG + chr5.1:42614681-42614700 None:intergenic 45.0%
TCTCGATGCGAGTGAGAAAA+GGG - chr5.1:42614392-42614411 MS.gene96541:CDS 45.0%
TGAGATAAGCACCCCAATTG+CGG + chr5.1:42613356-42613375 None:intergenic 45.0%
TGATGCTTATTGGCGACAAC+GGG - chr5.1:42614962-42614981 MS.gene96541:intron 45.0%
TGATGTTCTTGCTGCTCAAC+TGG - chr5.1:42613569-42613588 MS.gene96541:intron 45.0%
TTCATGGCGCTTAGCAATGT+AGG + chr5.1:42614682-42614701 None:intergenic 45.0%
TTCTCGATGCGAGTGAGAAA+AGG - chr5.1:42614391-42614410 MS.gene96541:CDS 45.0%
! AATGTTGCTGCTGCTTCAGT+TGG - chr5.1:42613459-42613478 MS.gene96541:intron 45.0%
! ACACGCCACTCTTGTTTCAA+AGG + chr5.1:42613195-42613214 None:intergenic 45.0%
! CAAGATGCCACGCATTTTCA+TGG + chr5.1:42614698-42614717 None:intergenic 45.0%
! CCTATGCCTTGACCTACTTT+TGG + chr5.1:42613081-42613100 None:intergenic 45.0%
! CGGATTAGGTACTTAAGGTC+AGG + chr5.1:42614024-42614043 None:intergenic 45.0%
! CTTGGTTCTTGGAGACTTAC+TGG - chr5.1:42614258-42614277 MS.gene96541:CDS 45.0%
! GCTTGTTACTAACTCTTGGC+AGG - chr5.1:42614734-42614753 MS.gene96541:intron 45.0%
! TTAGTGGCTTGGAATTGTCG+GGG - chr5.1:42613976-42613995 MS.gene96541:intron 45.0%
!! GGGTAAGGGTATCGATGTTA+AGG + chr5.1:42612690-42612709 None:intergenic 45.0%
!! TGCCTTGACCTACTTTTGGT+TGG + chr5.1:42613077-42613096 None:intergenic 45.0%
!! TTTGAGTTGGAAGCTGACGA+CGG - chr5.1:42613327-42613346 MS.gene96541:intron 45.0%
!!! AGCTGGGTGTTTTTTGTCAC+AGG - chr5.1:42613262-42613281 MS.gene96541:intron 45.0%
!!! GGTGTTTTTTGTCACAGGTG+TGG - chr5.1:42613267-42613286 MS.gene96541:intron 45.0%
AAAAGTGGGAACGACACCAG+GGG + chr5.1:42612995-42613014 None:intergenic 50.0%
AAGCCTGCTTTGCAACGTGT+TGG - chr5.1:42613375-42613394 MS.gene96541:intron 50.0%
AATGCGTGGCATCTTGAACC+GGG - chr5.1:42614702-42614721 MS.gene96541:intron 50.0%
AATGGCAGGACCTGATGATC+AGG - chr5.1:42613934-42613953 MS.gene96541:intron 50.0%
ACAAAAGTGGGAACGACACC+AGG + chr5.1:42612997-42613016 None:intergenic 50.0%
ACATACGGACAAGGTGTGTC+CGG - chr5.1:42613299-42613318 MS.gene96541:intron 50.0%
AGACATGTCTTCCGCACAAG+AGG + chr5.1:42614793-42614812 None:intergenic 50.0%
AGACCTCCATGGCTCATCAA+CGG - chr5.1:42614426-42614445 MS.gene96541:CDS 50.0%
ATAACGGTCAGCCACAGACT+TGG + chr5.1:42612878-42612897 None:intergenic 50.0%
ATTGCTCGGACATACGGACA+AGG - chr5.1:42613290-42613309 MS.gene96541:intron 50.0%
ATTTCTCTGGACGACGATGC+AGG - chr5.1:42615071-42615090 MS.gene96541:CDS 50.0%
CAAAAGTGGGAACGACACCA+GGG + chr5.1:42612996-42613015 None:intergenic 50.0%
CGACAAGCTGTTCTTGACTC+TGG - chr5.1:42614453-42614472 MS.gene96541:CDS 50.0%
CGGACCTTCATCAAGAACAC+GGG + chr5.1:42612932-42612951 None:intergenic 50.0%
CTAAGCGCCATGAAAATGCG+TGG - chr5.1:42614688-42614707 MS.gene96541:CDS 50.0%
CTCGATGCGAGTGAGAAAAG+GGG - chr5.1:42614393-42614412 MS.gene96541:CDS 50.0%
GCAGCAACATTTGTATGGCG+CGG + chr5.1:42613450-42613469 None:intergenic 50.0%
GCGCACTCGCTAATAGTTTG+TGG - chr5.1:42614562-42614581 MS.gene96541:CDS 50.0%
GCTTCCAACTCAAACAGCTC+CGG + chr5.1:42613321-42613340 None:intergenic 50.0%
GGCCGAAATGAAACTGCTGA+AGG - chr5.1:42613480-42613499 MS.gene96541:intron 50.0%
GGTAATAGATGTACCAGGCC+TGG + chr5.1:42613630-42613649 None:intergenic 50.0%
GGTGAGCTAGAGTCTCACTT+AGG + chr5.1:42614071-42614090 None:intergenic 50.0%
GGTTAAACCCTCCTCAGACA+GGG + chr5.1:42612710-42612729 None:intergenic 50.0%
GTAAAAGGAAACGGACCAGC+AGG + chr5.1:42613717-42613736 None:intergenic 50.0%
GTAACAAGCTCCTTGAAGCC+CGG + chr5.1:42614723-42614742 None:intergenic 50.0%
GTACCAACACGTTGCAAAGC+AGG + chr5.1:42613381-42613400 None:intergenic 50.0%
GTGCGGAAGACATGTCTGTT+TGG - chr5.1:42614796-42614815 MS.gene96541:CDS 50.0%
GTGTTCTTGATGAAGGTCCG+TGG - chr5.1:42612932-42612951 MS.gene96541:CDS 50.0%
TCCGAAGCTTTCCTCTTGTG+CGG - chr5.1:42614779-42614798 MS.gene96541:CDS 50.0%
TCCGCACAAGAGGAAAGCTT+CGG + chr5.1:42614783-42614802 None:intergenic 50.0%
TCGATGCGAGTGAGAAAAGG+GGG - chr5.1:42614394-42614413 MS.gene96541:CDS 50.0%
TGCTACGCGTATGCGCATAT+AGG + chr5.1:42613157-42613176 None:intergenic 50.0%
TTAACCTTGCTCCCACACCT+CGG - chr5.1:42614655-42614674 MS.gene96541:CDS 50.0%
TTTGCTGCTGATGGGGATGA+AGG - chr5.1:42613825-42613844 MS.gene96541:intron 50.0%
! AAACCGTTGATGAGCCATGG+AGG + chr5.1:42614432-42614451 None:intergenic 50.0%
! GCGGGGGTCTTGCATTATTT+TGG - chr5.1:42614163-42614182 MS.gene96541:CDS 50.0%
! GTGTGGATTGCTCGGACATA+CGG - chr5.1:42613284-42613303 MS.gene96541:intron 50.0%
! TCGACTTGTTTCACATGGCG+AGG - chr5.1:42614884-42614903 MS.gene96541:CDS 50.0%
! TGGTGTCAGGTTCAGAAGCA+AGG + chr5.1:42612738-42612757 None:intergenic 50.0%
! TGTCACAGGTGTGGATTGCT+CGG - chr5.1:42613276-42613295 MS.gene96541:intron 50.0%
! TGTTTTCCTGTAGACCGCAC+CGG - chr5.1:42614135-42614154 MS.gene96541:CDS 50.0%
!! ACAGGCCCTTGGTGCATTTT+CGG - chr5.1:42614354-42614373 MS.gene96541:CDS 50.0%
!! CCGGATTGAAGTGTCGGATT+AGG + chr5.1:42614038-42614057 None:intergenic 50.0%
AACCCTCCTCAGACAGGGTA+AGG + chr5.1:42612705-42612724 None:intergenic 55.0%
AACCTTTCTTCGACGGCACG+TGG + chr5.1:42614537-42614556 None:intergenic 55.0%
ACCCTCCTCAGACAGGGTAA+GGG + chr5.1:42612704-42612723 None:intergenic 55.0%
ACCCTTACCCTGTCTGAGGA+GGG - chr5.1:42612700-42612719 MS.gene96541:intron 55.0%
ACCTTTCTTCGACGGCACGT+GGG + chr5.1:42614536-42614555 None:intergenic 55.0%
AGGCGGAGTAGAAAGCAGGT+TGG + chr5.1:42613679-42613698 None:intergenic 55.0%
ATGTCTCGCGCATGAAAGCC+AGG - chr5.1:42612835-42612854 MS.gene96541:CDS 55.0%
CGATACCCTTACCCTGTCTG+AGG - chr5.1:42612696-42612715 MS.gene96541:intron 55.0%
CGCATGAAAGCCAGGCAAGA+GGG - chr5.1:42612843-42612862 MS.gene96541:CDS 55.0%
GACAACGGGCAAAGACACAC+TGG - chr5.1:42614976-42614995 MS.gene96541:intron 55.0%
GATGAGCCATGGAGGTCTAG+TGG + chr5.1:42614424-42614443 None:intergenic 55.0%
GCAGACTCGCAAGAGGAAAC+CGG - chr5.1:42613744-42613763 MS.gene96541:intron 55.0%
GCAGCCCGTGTTCTTGATGA+AGG - chr5.1:42612925-42612944 MS.gene96541:CDS 55.0%
GCATCTTGAACCGGGCTTCA+AGG - chr5.1:42614710-42614729 MS.gene96541:intron 55.0%
GCTTGGAATTGTCGGGGTGT+AGG - chr5.1:42613982-42614001 MS.gene96541:intron 55.0%
GGGCTGCATCAACTTTGTGG+TGG + chr5.1:42612912-42612931 None:intergenic 55.0%
GGGTTAAACCCTCCTCAGAC+AGG + chr5.1:42612711-42612730 None:intergenic 55.0%
GGTCACGATCACCAAGTCTG+TGG - chr5.1:42612864-42612883 MS.gene96541:CDS 55.0%
GTCATGGATCGGATTTCCCC+TGG - chr5.1:42612976-42612995 MS.gene96541:CDS 55.0%
GTGGTCGTAGAAATGCCGCT+TGG - chr5.1:42614301-42614320 MS.gene96541:CDS 55.0%
GTGTCCGGAGCTGTTTGAGT+TGG - chr5.1:42613314-42613333 MS.gene96541:intron 55.0%
TACCCTTACCCTGTCTGAGG+AGG - chr5.1:42612699-42612718 MS.gene96541:intron 55.0%
TACCTTCTTCCGCGCTGAAG+CGG + chr5.1:42615042-42615061 None:intergenic 55.0%
TACTGCTGCAGACTCGCAAG+AGG - chr5.1:42613737-42613756 MS.gene96541:intron 55.0%
TCAAGGACAGCAGTGGTGTC+AGG + chr5.1:42612751-42612770 None:intergenic 55.0%
TGACGACGGTGTCCGCAATT+GGG - chr5.1:42613341-42613360 MS.gene96541:intron 55.0%
TTCATGCATCCGCTTCAGCG+CGG - chr5.1:42615030-42615049 MS.gene96541:intron 55.0%
! CACGGGCTGCATCAACTTTG+TGG + chr5.1:42612915-42612934 None:intergenic 55.0%
! CGGAAACCGTTGATGAGCCA+TGG + chr5.1:42614435-42614454 None:intergenic 55.0%
AGCAATGTAGGGCCGAGGTG+TGG + chr5.1:42614670-42614689 None:intergenic 60.0%
ATCCGCTTCAGCGCGGAAGA+AGG - chr5.1:42615037-42615056 MS.gene96541:CDS 60.0%
CCAGAGGCGGAGTAGAAAGC+AGG + chr5.1:42613683-42613702 None:intergenic 60.0%
CCTAGGCAGGCCTGATCATC+AGG + chr5.1:42613947-42613966 None:intergenic 60.0%
CCTGATGATCAGGCCTGCCT+AGG - chr5.1:42613944-42613963 MS.gene96541:intron 60.0%
CCTGCTTTCTACTCCGCCTC+TGG - chr5.1:42613680-42613699 MS.gene96541:intron 60.0%
CCTTTCTTCGACGGCACGTG+GGG + chr5.1:42614535-42614554 None:intergenic 60.0%
CGCTTAGCAATGTAGGGCCG+AGG + chr5.1:42614675-42614694 None:intergenic 60.0%
CTGACGACGGTGTCCGCAAT+TGG - chr5.1:42613340-42613359 MS.gene96541:intron 60.0%
GACGACGGTGTCCGCAATTG+GGG - chr5.1:42613342-42613361 MS.gene96541:intron 60.0%
GCAATGTAGGGCCGAGGTGT+GGG + chr5.1:42614669-42614688 None:intergenic 60.0%
GCGCATGAAAGCCAGGCAAG+AGG - chr5.1:42612842-42612861 MS.gene96541:CDS 60.0%
GTGATCGTGACCCTCTTGCC+TGG + chr5.1:42612856-42612875 None:intergenic 60.0%
TCTACTCCGCCTCTGGTGCT+TGG - chr5.1:42613687-42613706 MS.gene96541:intron 60.0%
TGGCGTGTCCGCTCTAGCAA+TGG - chr5.1:42613207-42613226 MS.gene96541:CDS 60.0%
CCCCACGTGCCGTCGAAGAA+AGG - chr5.1:42614532-42614551 MS.gene96541:CDS 65.0%
CCTCTACCGGTGCGGTCTAC+AGG + chr5.1:42614144-42614163 None:intergenic 65.0%
CTGGTGCTTGGACTGCCTGC+TGG - chr5.1:42613699-42613718 MS.gene96541:intron 65.0%
GCAGGCAGTCCAAGCACCAG+AGG + chr5.1:42613699-42613718 None:intergenic 65.0%
GCTGCTGGTGCGACTTCTCC+AGG - chr5.1:42613609-42613628 MS.gene96541:intron 65.0%
GGCAGTCCAAGCACCAGAGG+CGG + chr5.1:42613696-42613715 None:intergenic 65.0%
GGCGCACCACTAGACCTCCA+TGG - chr5.1:42614415-42614434 MS.gene96541:CDS 65.0%
TATGGCGCGGCACAGCAGCT+GGG + chr5.1:42613437-42613456 None:intergenic 65.0%
TGCAAGACCCCCGCCTCTAC+CGG + chr5.1:42614157-42614176 None:intergenic 65.0%
TGGTGCGACTTCTCCAGGCC+TGG - chr5.1:42613614-42613633 MS.gene96541:intron 65.0%
! CCTGTAGACCGCACCGGTAG+AGG - chr5.1:42614141-42614160 MS.gene96541:CDS 65.0%
! GTAGACCGCACCGGTAGAGG+CGG - chr5.1:42614144-42614163 MS.gene96541:CDS 65.0%
! TAGACCGCACCGGTAGAGGC+GGG - chr5.1:42614145-42614164 MS.gene96541:CDS 65.0%
AGGGCCGAGGTGTGGGAGCA+AGG + chr5.1:42614662-42614681 None:intergenic 70.0%
CGCGGCACAGCAGCTGGGAT+AGG + chr5.1:42613432-42613451 None:intergenic 70.0%
GTATGGCGCGGCACAGCAGC+TGG + chr5.1:42613438-42613457 None:intergenic 70.0%
! AGACCGCACCGGTAGAGGCG+GGG - chr5.1:42614146-42614165 MS.gene96541:CDS 70.0%
GACCCCCGCCTCTACCGGTG+CGG + chr5.1:42614152-42614171 None:intergenic 75.0%
! GACCGCACCGGTAGAGGCGG+GGG - chr5.1:42614147-42614166 MS.gene96541:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 42612673 42615192 42612673 ID=MS.gene96541
chr5.1 mRNA 42612673 42615192 42612673 ID=MS.gene96541.t1;Parent=MS.gene96541
chr5.1 exon 42615033 42615192 42615033 ID=MS.gene96541.t1.exon1;Parent=MS.gene96541.t1
chr5.1 CDS 42615033 42615192 42615033 ID=cds.MS.gene96541.t1;Parent=MS.gene96541.t1
chr5.1 exon 42614741 42614945 42614741 ID=MS.gene96541.t1.exon2;Parent=MS.gene96541.t1
chr5.1 CDS 42614741 42614945 42614741 ID=cds.MS.gene96541.t1;Parent=MS.gene96541.t1
chr5.1 exon 42614250 42614713 42614250 ID=MS.gene96541.t1.exon3;Parent=MS.gene96541.t1
chr5.1 CDS 42614250 42614713 42614250 ID=cds.MS.gene96541.t1;Parent=MS.gene96541.t1
chr5.1 exon 42614019 42614201 42614019 ID=MS.gene96541.t1.exon4;Parent=MS.gene96541.t1
chr5.1 CDS 42614019 42614201 42614019 ID=cds.MS.gene96541.t1;Parent=MS.gene96541.t1
chr5.1 exon 42612773 42613240 42612773 ID=MS.gene96541.t1.exon5;Parent=MS.gene96541.t1
chr5.1 CDS 42612773 42613240 42612773 ID=cds.MS.gene96541.t1;Parent=MS.gene96541.t1
chr5.1 exon 42612673 42612704 42612673 ID=MS.gene96541.t1.exon6;Parent=MS.gene96541.t1
chr5.1 CDS 42612673 42612704 42612673 ID=cds.MS.gene96541.t1;Parent=MS.gene96541.t1
Gene Sequence

>MS.gene96541

ATGGATCCTAATAGCCTTAACATCGATACCCTTACCCTGTCTGAGGAGGGTTTAACCCTAAACCTTGCTTCTGAACCTGACACCACTGCTGTCCTTGAACATTGTCTGATTGGTCGCGTCCTTGCTGATCGCGAGATTCAATTTGCCTATTTCAGCGAGCGTATGTCTCGCGCATGAAAGCCAGGCAAGAGGGTCACGATCACCAAGTCTGTGGCTGACCGTTATCTCTTTCAGTTCCACCACAAAGTTGATGCAGCCCGTGTTCTTGATGAAGGTCCGTGGCTTTATGATAATTTTCATATCGTCATGGATCGGATTTCCCCTGGTGTCGTTCCCACTTTTGTCCCTTTGAACCACATAGACTTTTGGGTTCAAGTTCATGGCTTACCCTTTGGATTTATCCAACCAAAAGTAGGTCAAGGCATAGGAAGTTCCTTAGGTACCTTTAAGTCGTATGATGGACGTAATTAAATCCATAGCTCCTATATGCGCATACGCGTAGCAATTGATGTGACTGTTCCTTTGAAACAAGAGTGGCGTGTCCGCTCTAGCAATGGTACTTTTGTAACTGTTAACTTTAAATATGAAAAGCTGGGTGTTTTTTGTCACAGGTGTGGATTGCTCGGACATACGGACAAGGTGTGTCCGGAGCTGTTTGAGTTGGAAGCTGACGACGGTGTCCGCAATTGGGGTGCTTATCTCAAGCCTGCTTTGCAACGTGTTGGTACTGCTGCAACAAATAGGTGGATACAGGATCCTATCCCAGCTGCTGTGCCGCGCCATACAAATGTTGCTGCTGCTTCAGTTGGCCGAAATGAAACTGCTGAAGGTGCACCTGTTCCAAGTTTCAATGATAGGATGGCAGCTGTCCAGAATCAAATCATTGCAATCAAACATGATGTTCTTGCTGCTCAACTGGCTGTCAAAGCAAAACAAGCTGCTGGTGCGACTTCTCCAGGCCTGGTACATCTATTACCGTCCTCTTCAACAGGTAATTCAGGGTCCAACCTGCTTTCTACTCCGCCTCTGGTGCTTGGACTGCCTGCTGGTCCGTTTCCTTTTACTACTGCTGCAGACTCGCAAGAGGAAACCGGATCTGACTTGAAGAAAAGAAAGAGGATGTTGACCCTTCAGAATGGTGACAATTCATCTTTTGCTGCTGATGGGGATGAAGGTAACAATGTAATAGGAACAAATGTTAGTCATGGGGGGATGATGATATGAATGTAATGTCTAACCCACTGTTTGATGAAACTGATGTAATGGCAGGACCTGATGATCAGGCCTGCCTAGGTAAATGAGTTTAGTGGCTTGGAATTGTCGGGGTGTAGGTAGCCCGAGTACAATTCCTGACCTTAAGTACCTAATCCGACACTTCAATCCGGATATCTTATTCCTAAGTGAGACTCTAGCTCACCAAAATAAAATTGAAGAACTTCGTTTTTTTCTTGGTTACGATTGTTGTTTTCCTGTAGACCGCACCGGTAGAGGCGGGGGTCTTGCATTATTTTGGCGCAATTCTTTCACTTGTCAGCTTATTGATTTTTCAAGTAATCATATTATTGTTGAAATTTTTGATAGTGTTCTTGGTTCTTGGAGACTTACTGGTTACTATGGTTATCCTAATGGTGGTCGTAGAAATGCCGCTTGGAACTTTTTACGTCAACTTTCAAATCAATTTACAGGCCCTTGGTGCATTTTCGGCGATTTTAATGACATTCTCGATGCGAGTGAGAAAAGGGGGCGCACCACTAGACCTCCATGGCTCATCAACGGTTTCCGACAAGCTGTTCTTGACTCTGGGTTATCCGATGTTCCGATTGAAGGTTACCCTTTCACATGGTTCAAAAGTCTTGGCACCCCACGTGCCGTCGAAGAAAGGTTAGATCGCGCACTCGCTAATAGTTTGTGGTTTAATATTTTTCCAACTGCTTATGTTGAAACTTTGGTAGCTCCTGCTTCTGATCACTATCCTATTTATGTTAACCTTGCTCCCACACCTCGGCCCTACATTGCTAAGCGCCATGAAAATGCGTGGCATCTTGAACCGGGCTTCAAGGAGCTTGTTACTAACTCTTGGCAGGCACACTCCACTCATACTATTATTCCGAAGCTTTCCTCTTGTGCGGAAGACATGTCTGTTTGGAACAAATCCCATTGCCACAATTTAAAAAAAGATATTGAAGATTGTCGTAAACAGTTGCAGGAAACTCGACTTGTTTCACATGGCGAGGATCAAACGCGCATGTTCGAATTGAGAAAACGTATGCAGCGGTTGTTATCCCAAGATGATGCTTATTGGCGACAACGGGCAAAGACACACTGGTATAAGGACGGTTACAGAAACACAAAATTTTTTCATGCATCCGCTTCAGCGCGGAAGAAGGTAAATCGTATTATTTCTCTGGACGACGATGCAGGTAATAAAATCACTAATGCACAAGGTTTGTGTGATGTCGCTCGAAATTATTTTGTGCAAATTTTTCAGCAGCAAACAGGCGATTTTTCTCCCGTCATTGA
Protein sequence

>MS.gene96541.t1

MDPNSLNIDTLTLSEEGLTLNLASEPDTTAVLEHCLIGRVLADREIQFAYFSELDAARVLDEGPWLYDNFHIVMDRISPGVVPTFVPLNHIDFWVQVHGLPFGFIQPKVGQGIGSSLGTFKSSYMRIRVAIDVTVPLKQEWRVRSSNGTFVTVNFKYEKLGVFCHRCGLLGHTDKVCPELFELEADDGVRNWGAYLKPALQRVGTAATNRWIQDPIPAAVPRHTNVAAASVGRNETAEGAPVPSFNDRMAAVQNQIIAIKHDVLAAQLAVKAKQAAGNSGSNLLSTPPLVLGLPAGPFPFTTAADSQEETGSDLKKRKRMLTLQNGDNSSFAADGDEAPASDHYPIYVNLAPTPRPYIAKRHENAWHLEPGFKELVTNSWQAHSTHTIIPKLSSCAEDMSVWNKSHCHNLKKDIEDCRKQLQETRLVSHGEDQTRMFELRKRMQRLLSQDDAYWRQRAKTHWYKDGYRNTKFFHASASARKKVNRIISLDDDAAANRRFFSRH