AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86275

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86275.t1 MTR_4g103530 72.308 65 18 0 1 65 29 93 1.47e-28 109
MS.gene86275.t1 MTR_3g053920 35.849 212 92 6 1 194 83 268 1.11e-27 109
MS.gene86275.t1 MTR_2g061500 70.213 47 14 0 1 47 83 129 9.39e-19 81.6
MS.gene86275.t1 MTR_6g033215 32.203 118 78 1 2 117 177 294 2.90e-18 84.0
MS.gene86275.t1 MTR_7g011710 63.158 57 21 0 1 57 29 85 9.16e-18 79.7
MS.gene86275.t1 MTR_0010s0370 33.673 98 61 2 1 95 81 177 5.66e-16 75.5
MS.gene86275.t1 MTR_0010s0350 33.673 98 61 2 1 95 81 177 5.66e-16 75.5
MS.gene86275.t1 MTR_6g034215 68.889 45 14 0 273 317 205 249 1.02e-13 71.2
MS.gene86275.t1 MTR_4g020630 65.116 43 15 0 273 315 137 179 3.41e-12 67.4
MS.gene86275.t1 MTR_8g463110 39.773 88 47 1 234 321 168 249 3.26e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86275.t1 AT3G31430 34.351 131 78 4 6 133 186 311 1.50e-15 76.6
MS.gene86275.t1 AT2G17920 25.143 175 117 3 1 173 86 248 3.71e-15 75.5
MS.gene86275.t1 AT5G36228 30.000 150 98 3 1 145 86 233 9.43e-15 74.7
MS.gene86275.t1 AT3G57587 26.471 136 96 2 1 134 86 219 2.71e-14 73.2
MS.gene86275.t1 AT2G41590 27.941 136 94 2 1 134 86 219 1.11e-13 71.6
MS.gene86275.t1 AT5G18636 27.941 136 94 2 1 134 86 219 1.28e-12 68.6
MS.gene86275.t1 AT5G25200 27.941 136 94 2 1 134 86 219 1.37e-12 68.2
MS.gene86275.t1 AT2G02103 27.941 136 94 2 1 134 86 219 4.30e-12 67.0

Find 70 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTCTTTATGCGGTTAA+AGG 0.194322 1.3:-10607019 MS.gene86275:CDS
TTTGTTGTTGATGGGGTTAA+TGG 0.250082 1.3:-10606292 MS.gene86275:CDS
TTGTTGTTGATGGGGTTAAT+GGG 0.288052 1.3:-10606291 MS.gene86275:CDS
TGCTATAGGTGTGGCCTTCT+CGG 0.310021 1.3:-10606892 MS.gene86275:CDS
GAGATTAATTCTATCAATAA+TGG 0.366563 1.3:-10606610 MS.gene86275:CDS
CTTAAAGTGAATAGTAATAT+AGG 0.375227 1.3:+10606936 None:intergenic
TGCCTTGACCAACCCTTTGT+TGG 0.407125 1.3:+10607094 None:intergenic
TCACTTTAAGTATGAGAAGC+TGG 0.425275 1.3:-10606923 MS.gene86275:CDS
AGTCTGAAGCTGAGGATATC+AGG 0.425922 1.3:-10606393 MS.gene86275:CDS
CAAACATCTGTTCAAAAGGA+TGG 0.427230 1.3:+10605470 None:intergenic
TAAACTCAGCACAACAGGTT+TGG 0.434699 1.3:+10606468 None:intergenic
GCATCAAACATCTGTTCAAA+AGG 0.441437 1.3:+10605466 None:intergenic
GCAGGTAAACTCAGCACAAC+AGG 0.442789 1.3:+10606463 None:intergenic
CAAGGCATTGGTCAATTCCT+TGG 0.446754 1.3:-10607078 MS.gene86275:CDS
GTCCCATCCGTGAGAGCTGC+AGG 0.459405 1.3:+10606445 None:intergenic
TCCTCAGCTTCAGACTCATT+AGG 0.461220 1.3:+10606400 None:intergenic
CTTTGATTTCATCCAACAAA+GGG 0.464397 1.3:-10607106 MS.gene86275:CDS
GGCGTCAGATTCAAAACATC+AGG 0.464815 1.3:-10605242 MS.gene86275:CDS
ACAACACGTTGCACAGCACC+AGG 0.465139 1.3:+10607174 None:intergenic
GAATCCAACTCAAATAGATT+AGG 0.474663 1.3:+10606850 None:intergenic
TGTTGTTGATGGGGTTAATG+GGG 0.477365 1.3:-10606290 MS.gene86275:CDS
AGTAATAGCGTTACCACTCT+TGG 0.478318 1.3:+10606558 None:intergenic
CAGCTCTCACGGATGGGACA+AGG 0.480472 1.3:-10606441 MS.gene86275:CDS
CTTTGTTGGATGAAATCAAA+GGG 0.503748 1.3:+10607108 None:intergenic
ATGTCCTAATCTATTTGAGT+TGG 0.509382 1.3:-10606854 MS.gene86275:CDS
CACTTTAAGTATGAGAAGCT+GGG 0.517943 1.3:-10606922 MS.gene86275:CDS
GAAGAAGCGGAAGCGAATGT+TGG 0.524086 1.3:-10606362 MS.gene86275:CDS
TGGACCTTCATCGAGCACTT+TGG 0.525123 1.3:+10607239 None:intergenic
CAAAGGGTTGGTCAAGGCAT+TGG 0.526940 1.3:-10607090 MS.gene86275:CDS
ATGTTGGCGGAATGTCTTCA+AGG 0.530134 1.3:-10606346 MS.gene86275:CDS
AATAGTAATATAGGCACCAT+TGG 0.531830 1.3:+10606945 None:intergenic
AAGTGCTCGATGAAGGTCCA+TGG 0.532614 1.3:-10607236 MS.gene86275:CDS
GCTGCCAAAGTGCTCGATGA+AGG 0.534016 1.3:-10607243 MS.gene86275:CDS
GATTTCATCCAACAAAGGGT+TGG 0.535891 1.3:-10607102 MS.gene86275:CDS
GAGTTTACCTGCAGCTCTCA+CGG 0.539483 1.3:-10606452 MS.gene86275:CDS
GATTGTTCAAAACAACTCGT+TGG 0.541576 1.3:-10606581 MS.gene86275:CDS
AAACATCTGTTCAAAAGGAT+GGG 0.546543 1.3:+10605471 None:intergenic
AGAAGCTGTGAATTGTGTTA+CGG 0.551893 1.3:+10607034 None:intergenic
CCTTTGATTTCATCCAACAA+AGG 0.558202 1.3:-10607107 MS.gene86275:CDS
GAAGCGGAAGCGAATGTTGG+CGG 0.562818 1.3:-10606359 MS.gene86275:CDS
TTTGAGTTGGATTCTGATGA+CGG 0.563105 1.3:-10606841 MS.gene86275:CDS
AGCTCTCACGGATGGGACAA+GGG 0.563949 1.3:-10606440 MS.gene86275:CDS
AACAACTCGTTGGCCAAGAG+TGG 0.567935 1.3:-10606571 MS.gene86275:CDS
AGCAGAAGTACTCGCAGATG+AGG 0.568507 1.3:+10606507 None:intergenic
ATCCAACAAAGGGTTGGTCA+AGG 0.576913 1.3:-10607096 MS.gene86275:CDS
AATTAATCTCATTATGCAGA+GGG 0.577262 1.3:+10606623 None:intergenic
TTACCTGCAGCTCTCACGGA+TGG 0.579490 1.3:-10606448 MS.gene86275:CDS
CCTTTGTTGGATGAAATCAA+AGG 0.584076 1.3:+10607107 None:intergenic
AGGAGCTTGTTACTGATGCA+TGG 0.585252 1.3:-10605377 MS.gene86275:CDS
CGTACAATTTCATTTCGCCA+AGG 0.585667 1.3:+10607061 None:intergenic
GTAACAAGCTCCTTGAAACC+TGG 0.587189 1.3:+10605387 None:intergenic
CGTCCTCATCTTCAAAAGCG+TGG 0.598069 1.3:-10605441 MS.gene86275:CDS
TCCTAATGAGTCTGAAGCTG+AGG 0.598120 1.3:-10606401 MS.gene86275:CDS
CAATTCACAGCTTCTTTATG+CGG 0.598935 1.3:-10607026 MS.gene86275:CDS
GAAGTACTCGCAGATGAGGA+AGG 0.599387 1.3:+10606511 None:intergenic
TACCTGCAGCTCTCACGGAT+GGG 0.599974 1.3:-10606447 MS.gene86275:CDS
AGTGCTCGATGAAGGTCCAT+GGG 0.606553 1.3:-10607235 MS.gene86275:CDS
CCTTCTCGGTCATACTGACA+AGG 0.620615 1.3:-10606878 MS.gene86275:CDS
GAATTAATCTCATTATGCAG+AGG 0.631690 1.3:+10606622 None:intergenic
TCAGGTCAGAAATGAAGAAG+CGG 0.634926 1.3:-10606375 MS.gene86275:CDS
ATATTTCCAATCTAGGTGGT+CGG 0.636280 1.3:-10606651 MS.gene86275:intron
AACACGTTGCACAGCACCAG+GGG 0.639836 1.3:+10607176 None:intergenic
TGAAATCAAAGGGTAAACCA+TGG 0.647951 1.3:+10607118 None:intergenic
TGAAAACTATCATACACCCA+TGG 0.648942 1.3:+10607219 None:intergenic
GTTGTTGATAGAATTGCCCC+TGG 0.650863 1.3:-10607192 MS.gene86275:CDS
CCTTGTCAGTATGACCGAGA+AGG 0.653416 1.3:+10606878 None:intergenic
GTTAATGGGGATACTGAACT+AGG 0.658998 1.3:-10606277 MS.gene86275:intron
TGGCAGGTACGAGCAACCAA+TGG 0.664005 1.3:-10606961 MS.gene86275:CDS
CAACACGTTGCACAGCACCA+GGG 0.685232 1.3:+10607175 None:intergenic
TTGGCGGAATGTCTTCAAGG+TGG 0.782723 1.3:-10606343 MS.gene86275:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTAAAGTGAATAGTAATAT+AGG + chr1.3:10605550-10605569 None:intergenic 20.0%
!! GAGATTAATTCTATCAATAA+TGG - chr1.3:10605873-10605892 MS.gene86275:intron 20.0%
!!! GTAAATCTTCAATTTTATTG+CGG + chr1.3:10606459-10606478 None:intergenic 20.0%
!!! TAAATCTTCAATTTTATTGC+GGG + chr1.3:10606458-10606477 None:intergenic 20.0%
! AATGTGAATATTTCCAATCT+AGG - chr1.3:10605825-10605844 MS.gene86275:intron 25.0%
! AATTAATCTCATTATGCAGA+GGG + chr1.3:10605863-10605882 None:intergenic 25.0%
! GAGATTAAACCAATGATTAT+TGG + chr1.3:10606941-10606960 None:intergenic 25.0%
!! TTTAAATCTGGAATTGCATT+CGG + chr1.3:10606379-10606398 None:intergenic 25.0%
!!! AGTTTTCTTTTGTTGTTGAT+GGG - chr1.3:10606183-10606202 MS.gene86275:intron 25.0%
!!! TCTGAACCATATTGATTTTT+GGG - chr1.3:10605335-10605354 MS.gene86275:intron 25.0%
AAACATCTGTTCAAAAGGAT+GGG + chr1.3:10607015-10607034 None:intergenic 30.0%
AAACCATTTATCAACCAGTT+AGG + chr1.3:10606799-10606818 None:intergenic 30.0%
AATAGTAATATAGGCACCAT+TGG + chr1.3:10605541-10605560 None:intergenic 30.0%
ACTGATTAGATAATTGACGA+AGG + chr1.3:10606699-10606718 None:intergenic 30.0%
AGGCGACTTTAATGATATTA+TGG - chr1.3:10606741-10606760 MS.gene86275:intron 30.0%
AGGTTATAATGTTAGTGAGA+GGG - chr1.3:10606226-10606245 MS.gene86275:intron 30.0%
ATGTCCTAATCTATTTGAGT+TGG - chr1.3:10605629-10605648 MS.gene86275:intron 30.0%
CAAAAATCAATATGGTTCAG+AGG + chr1.3:10605336-10605355 None:intergenic 30.0%
CAATTATCTAATCAGTTTGC+AGG - chr1.3:10606703-10606722 MS.gene86275:intron 30.0%
CTTTGTTGGATGAAATCAAA+GGG + chr1.3:10605378-10605397 None:intergenic 30.0%
GAAAAAATCTTCAACCTAAC+TGG - chr1.3:10606782-10606801 MS.gene86275:intron 30.0%
GAAGATTTACGTTATTTGCT+TGG - chr1.3:10606469-10606488 MS.gene86275:CDS 30.0%
GAATCCAACTCAAATAGATT+AGG + chr1.3:10605636-10605655 None:intergenic 30.0%
GAATTAATCTCATTATGCAG+AGG + chr1.3:10605864-10605883 None:intergenic 30.0%
TAGGTTATAATGTTAGTGAG+AGG - chr1.3:10606225-10606244 MS.gene86275:intron 30.0%
TATGGATGCTAGTGAAAAAA+GGG - chr1.3:10606759-10606778 MS.gene86275:intron 30.0%
TTATGGATGCTAGTGAAAAA+AGG - chr1.3:10606758-10606777 MS.gene86275:intron 30.0%
TTCACTTGGTTCAAAAGTTT+GGG - chr1.3:10606874-10606893 MS.gene86275:CDS 30.0%
TTGGTTTAATCTCTTTCCTA+CGG - chr1.3:10606948-10606967 MS.gene86275:CDS 30.0%
TTTCACTTGGTTCAAAAGTT+TGG - chr1.3:10606873-10606892 MS.gene86275:CDS 30.0%
! AAACTTTTGAACCAAGTGAA+AGG + chr1.3:10606874-10606893 None:intergenic 30.0%
! ATTTTCGGTAGTAGCTAAAT+TGG - chr1.3:10607143-10607162 MS.gene86275:CDS 30.0%
! CAAAGTAATGATGTATTGAC+AGG - chr1.3:10606287-10606306 MS.gene86275:CDS 30.0%
! CAGATTTAAAGTACCTAGTT+CGG - chr1.3:10606389-10606408 MS.gene86275:CDS 30.0%
! CTTTGATTTCATCCAACAAA+GGG - chr1.3:10605377-10605396 MS.gene86275:CDS 30.0%
! TTAAATCTGGAATTGCATTC+GGG + chr1.3:10606378-10606397 None:intergenic 30.0%
!! AGAACTGATAATGCTTTTTG+AGG - chr1.3:10605765-10605784 MS.gene86275:intron 30.0%
!! CAAAAAGCATTATCAGTTCT+CGG + chr1.3:10605765-10605784 None:intergenic 30.0%
!!! CTCTGAACCATATTGATTTT+TGG - chr1.3:10605334-10605353 MS.gene86275:intron 30.0%
!!! GAGTTTTCTTTTGTTGTTGA+TGG - chr1.3:10606182-10606201 MS.gene86275:intron 30.0%
!!! GTTTTCTTTTGTTGTTGATG+GGG - chr1.3:10606184-10606203 MS.gene86275:intron 30.0%
AAACCAATGATTATTGGCGA+GGG + chr1.3:10606935-10606954 None:intergenic 35.0%
AGAAGCTGTGAATTGTGTTA+CGG + chr1.3:10605452-10605471 None:intergenic 35.0%
AGCGATTATTGATACAGGTT+TGG - chr1.3:10606825-10606844 MS.gene86275:intron 35.0%
ATATTTCCAATCTAGGTGGT+CGG - chr1.3:10605832-10605851 MS.gene86275:intron 35.0%
ATGGATGCTAGTGAAAAAAG+GGG - chr1.3:10606760-10606779 MS.gene86275:intron 35.0%
CAAACATCTGTTCAAAAGGA+TGG + chr1.3:10607016-10607035 None:intergenic 35.0%
CAATTCACAGCTTCTTTATG+CGG - chr1.3:10605457-10605476 MS.gene86275:CDS 35.0%
CACTTTAAGTATGAGAAGCT+GGG - chr1.3:10605561-10605580 MS.gene86275:intron 35.0%
CCTTTGTTGGATGAAATCAA+AGG + chr1.3:10605379-10605398 None:intergenic 35.0%
CGAACTAGGTACTTTAAATC+TGG + chr1.3:10606391-10606410 None:intergenic 35.0%
CTGTATCAATAATCGCTTGT+CGG + chr1.3:10606822-10606841 None:intergenic 35.0%
CTTGCACCCAAAAATCAATA+TGG + chr1.3:10605344-10605363 None:intergenic 35.0%
GATAAATGAGTCTGATAGGA+TGG - chr1.3:10606332-10606351 MS.gene86275:CDS 35.0%
GATGTTAATGATGTTGTCCA+TGG - chr1.3:10606607-10606626 MS.gene86275:CDS 35.0%
GATTATTGATACAGGTTTGG+TGG - chr1.3:10606828-10606847 MS.gene86275:intron 35.0%
GATTGTTCAAAACAACTCGT+TGG - chr1.3:10605902-10605921 MS.gene86275:intron 35.0%
GCATCAAACATCTGTTCAAA+AGG + chr1.3:10607020-10607039 None:intergenic 35.0%
GGTTATAATGTTAGTGAGAG+GGG - chr1.3:10606227-10606246 MS.gene86275:intron 35.0%
GTGAATATTTCCAATCTAGG+TGG - chr1.3:10605828-10605847 MS.gene86275:intron 35.0%
TAAACCAATGATTATTGGCG+AGG + chr1.3:10606936-10606955 None:intergenic 35.0%
TCACTTTAAGTATGAGAAGC+TGG - chr1.3:10605560-10605579 MS.gene86275:intron 35.0%
TGAAAACTATCATACACCCA+TGG + chr1.3:10605267-10605286 None:intergenic 35.0%
TGAAATCAAAGGGTAAACCA+TGG + chr1.3:10605368-10605387 None:intergenic 35.0%
! AAGCATTGCAATAAGCTGAA+GGG - chr1.3:10607201-10607220 MS.gene86275:CDS 35.0%
! CCTTTGATTTCATCCAACAA+AGG - chr1.3:10605376-10605395 MS.gene86275:CDS 35.0%
! GCACACACAATTTGCATTTT+CGG - chr1.3:10607128-10607147 MS.gene86275:CDS 35.0%
! TTGTTGTTGATGGGGTTAAT+GGG - chr1.3:10606192-10606211 MS.gene86275:intron 35.0%
!! CAACCTAACTGGTTGATAAA+TGG - chr1.3:10606793-10606812 MS.gene86275:intron 35.0%
!! GTATTTTGAACCAGGTTTCA+AGG - chr1.3:10607086-10607105 MS.gene86275:CDS 35.0%
!! TTTGAGTTGGATTCTGATGA+CGG - chr1.3:10605642-10605661 MS.gene86275:intron 35.0%
!! TTTGTTGTTGATGGGGTTAA+TGG - chr1.3:10606191-10606210 MS.gene86275:intron 35.0%
ACTTCTAACACTGCTGATGA+TGG - chr1.3:10605801-10605820 MS.gene86275:intron 40.0%
AGTAATAGCGTTACCACTCT+TGG + chr1.3:10605928-10605947 None:intergenic 40.0%
ATGATGTTGTCCATGGTAAG+TGG - chr1.3:10606614-10606633 MS.gene86275:CDS 40.0%
ATGGGATAGTGATCTGAAGA+TGG + chr1.3:10606997-10607016 None:intergenic 40.0%
CAGCTTCTTTATGCGGTTAA+AGG - chr1.3:10605464-10605483 MS.gene86275:CDS 40.0%
CCTATCAGACTCATTTATCC+CGG + chr1.3:10606331-10606350 None:intergenic 40.0%
CGACAAGCGATTATTGATAC+AGG - chr1.3:10606820-10606839 MS.gene86275:intron 40.0%
CGTACAATTTCATTTCGCCA+AGG + chr1.3:10605425-10605444 None:intergenic 40.0%
CTCGTCCAATGAAAAAACAG+TGG - chr1.3:10605502-10605521 MS.gene86275:intron 40.0%
GATTTCATCCAACAAAGGGT+TGG - chr1.3:10605381-10605400 MS.gene86275:CDS 40.0%
GTTAATGGGGATACTGAACT+AGG - chr1.3:10606206-10606225 MS.gene86275:intron 40.0%
TAAACTCAGCACAACAGGTT+TGG + chr1.3:10606018-10606037 None:intergenic 40.0%
TCAGGTCAGAAATGAAGAAG+CGG - chr1.3:10606108-10606127 MS.gene86275:intron 40.0%
TCCAATGAAAAAACAGTGGC+AGG - chr1.3:10605506-10605525 MS.gene86275:intron 40.0%
TCTGATAGGATGGAATTGCA+GGG - chr1.3:10606342-10606361 MS.gene86275:CDS 40.0%
TGGAAGGATATCCTTTCACT+TGG - chr1.3:10606860-10606879 MS.gene86275:CDS 40.0%
TGGGATAGTGATCTGAAGAT+GGG + chr1.3:10606996-10607015 None:intergenic 40.0%
! GTTTTCGATACGAAAATGCG+TGG - chr1.3:10607064-10607083 MS.gene86275:CDS 40.0%
! GTTTTGCAACCATCTGTTAG+TGG + chr1.3:10605724-10605743 None:intergenic 40.0%
! TGCTTTTCTGTTGATCGTAG+TGG - chr1.3:10606502-10606521 MS.gene86275:CDS 40.0%
! TGTTGTTGATGGGGTTAATG+GGG - chr1.3:10606193-10606212 MS.gene86275:intron 40.0%
!! AAACCACGCTTTTGAAGATG+AGG + chr1.3:10607048-10607067 None:intergenic 40.0%
!! AATGCGTGGTATTTTGAACC+AGG - chr1.3:10607078-10607097 MS.gene86275:CDS 40.0%
!! AGCTGGGAGTTTTATGCTAT+AGG - chr1.3:10605577-10605596 MS.gene86275:intron 40.0%
!! GAAGCATTGCAATAAGCTGA+AGG - chr1.3:10607200-10607219 MS.gene86275:CDS 40.0%
!! GCTTTTTGAGGAACACATGT+TGG - chr1.3:10605777-10605796 MS.gene86275:intron 40.0%
!! GGAGTTTTATGCTATAGGTG+TGG - chr1.3:10605582-10605601 MS.gene86275:intron 40.0%
!!! ACCTGCCACTGTTTTTTCAT+TGG + chr1.3:10605510-10605529 None:intergenic 40.0%
AAGTCGCCTAGTATACACCA+AGG + chr1.3:10606730-10606749 None:intergenic 45.0%
AAGTGCGCCAAAAAAGAGCA+AGG + chr1.3:10606540-10606559 None:intergenic 45.0%
ATGTTGGCGGAATGTCTTCA+AGG - chr1.3:10606137-10606156 MS.gene86275:intron 45.0%
CCGGGATAAATGAGTCTGAT+AGG - chr1.3:10606328-10606347 MS.gene86275:CDS 45.0%
CCTAGTTCGGCACTTCAATT+CGG - chr1.3:10606402-10606421 MS.gene86275:CDS 45.0%
CTAATCAGTTTGCAGGTCCT+TGG - chr1.3:10606710-10606729 MS.gene86275:intron 45.0%
CTGACATGGTTATGTGGAGT+AGG - chr1.3:10607178-10607197 MS.gene86275:CDS 45.0%
CTGATAGGATGGAATTGCAG+GGG - chr1.3:10606343-10606362 MS.gene86275:CDS 45.0%
GGCGTCAGATTCAAAACATC+AGG - chr1.3:10607241-10607260 MS.gene86275:CDS 45.0%
GGGATAGTGATCTGAAGATG+GGG + chr1.3:10606995-10607014 None:intergenic 45.0%
GTAACAAGCTCCTTGAAACC+TGG + chr1.3:10607099-10607118 None:intergenic 45.0%
GTCTGATAGGATGGAATTGC+AGG - chr1.3:10606341-10606360 MS.gene86275:CDS 45.0%
GTGAAAGGATATCCTTCCAC+CGG + chr1.3:10606859-10606878 None:intergenic 45.0%
GTGTCTCGCTTAAGAACAAG+AGG + chr1.3:10606429-10606448 None:intergenic 45.0%
TCCTCAGCTTCAGACTCATT+AGG + chr1.3:10606086-10606105 None:intergenic 45.0%
TCGGCACAACAGATGGTATA+GGG + chr1.3:10605746-10605765 None:intergenic 45.0%
TCTGTTGATCGTAGTGGTAG+AGG - chr1.3:10606508-10606527 MS.gene86275:CDS 45.0%
! AGGGTGATATTGAAGAGTGC+AGG - chr1.3:10607220-10607239 MS.gene86275:CDS 45.0%
! AGTCTGAAGCTGAGGATATC+AGG - chr1.3:10606090-10606109 MS.gene86275:intron 45.0%
! ATTGACAGGCTCTGATGATC+AGG - chr1.3:10606301-10606320 MS.gene86275:CDS 45.0%
! GTTGTTGATAGAATTGCCCC+TGG - chr1.3:10605291-10605310 MS.gene86275:intron 45.0%
! TCCTAATGAGTCTGAAGCTG+AGG - chr1.3:10606082-10606101 MS.gene86275:intron 45.0%
! TTCAGGGTACCTATAGTAGC+CGG + chr1.3:10606647-10606666 None:intergenic 45.0%
!! AGGAGCTTGTTACTGATGCA+TGG - chr1.3:10607106-10607125 MS.gene86275:CDS 45.0%
!! ATCCAACAAAGGGTTGGTCA+AGG - chr1.3:10605387-10605406 MS.gene86275:CDS 45.0%
!! CAAGGCATTGGTCAATTCCT+TGG - chr1.3:10605405-10605424 MS.gene86275:CDS 45.0%
!! TACAGGTTTGGTGGATGTTC+CGG - chr1.3:10606837-10606856 MS.gene86275:CDS 45.0%
!!! GATTTTTGGGTGCAAGTCCA+TGG - chr1.3:10605348-10605367 MS.gene86275:intron 45.0%
AACAACTCGTTGGCCAAGAG+TGG - chr1.3:10605912-10605931 MS.gene86275:intron 50.0%
AAGTGCTCGATGAAGGTCCA+TGG - chr1.3:10605247-10605266 MS.gene86275:intron 50.0%
AAGTTTGGGAACACCACGTG+CGG - chr1.3:10606888-10606907 MS.gene86275:CDS 50.0%
ACCCTGAAGGAAGACGTAGA+AGG - chr1.3:10606659-10606678 MS.gene86275:intron 50.0%
AGATTCTCCAGAGTAGCCGT+AGG + chr1.3:10606967-10606986 None:intergenic 50.0%
AGTGCTCGATGAAGGTCCAT+GGG - chr1.3:10605248-10605267 MS.gene86275:intron 50.0%
CATGGTAAGTGGAGACTCAC+CGG - chr1.3:10606625-10606644 MS.gene86275:CDS 50.0%
CCCTGAAGGAAGACGTAGAA+GGG - chr1.3:10606660-10606679 MS.gene86275:intron 50.0%
CCCTTCTACGTCTTCCTTCA+GGG + chr1.3:10606663-10606682 None:intergenic 50.0%
CCTTCTCGGTCATACTGACA+AGG - chr1.3:10605605-10605624 MS.gene86275:intron 50.0%
CCTTGTCAGTATGACCGAGA+AGG + chr1.3:10605608-10605627 None:intergenic 50.0%
CGTCCTCATCTTCAAAAGCG+TGG - chr1.3:10607042-10607061 MS.gene86275:CDS 50.0%
CTCGGCACAACAGATGGTAT+AGG + chr1.3:10605747-10605766 None:intergenic 50.0%
GAAGAAGCGGAAGCGAATGT+TGG - chr1.3:10606121-10606140 MS.gene86275:intron 50.0%
GAGCCCTCGCCAATAATCAT+TGG - chr1.3:10606929-10606948 MS.gene86275:CDS 50.0%
GAGTTTACCTGCAGCTCTCA+CGG - chr1.3:10606031-10606050 MS.gene86275:intron 50.0%
GCAGGTAAACTCAGCACAAC+AGG + chr1.3:10606023-10606042 None:intergenic 50.0%
GGATGGAATTGCAGGGGTTT+AGG - chr1.3:10606349-10606368 MS.gene86275:CDS 50.0%
GGCTACTATAGGTACCCTGA+AGG - chr1.3:10606646-10606665 MS.gene86275:intron 50.0%
GTTGATCGTAGTGGTAGAGG+AGG - chr1.3:10606511-10606530 MS.gene86275:CDS 50.0%
TCAGACTCATTTATCCCGGC+AGG + chr1.3:10606327-10606346 None:intergenic 50.0%
TCAGTTCTCGGCACAACAGA+TGG + chr1.3:10605753-10605772 None:intergenic 50.0%
TCTCTTTCCTACGGCTACTC+TGG - chr1.3:10606957-10606976 MS.gene86275:CDS 50.0%
TGCCTTGACCAACCCTTTGT+TGG + chr1.3:10605392-10605411 None:intergenic 50.0%
TGCTATAGGTGTGGCCTTCT+CGG - chr1.3:10605591-10605610 MS.gene86275:intron 50.0%
TGGACCTTCATCGAGCACTT+TGG + chr1.3:10605247-10605266 None:intergenic 50.0%
TTGGCGGAATGTCTTCAAGG+TGG - chr1.3:10606140-10606159 MS.gene86275:intron 50.0%
! GAAGTACTCGCAGATGAGGA+AGG + chr1.3:10605975-10605994 None:intergenic 50.0%
! GCAGGTCCTTGGTGTATACT+AGG - chr1.3:10606721-10606740 MS.gene86275:intron 50.0%
!! AGCAGAAGTACTCGCAGATG+AGG + chr1.3:10605979-10605998 None:intergenic 50.0%
!! CAAAGGGTTGGTCAAGGCAT+TGG - chr1.3:10605393-10605412 MS.gene86275:CDS 50.0%
!! CCGAATTGAAGTGCCGAACT+AGG + chr1.3:10606405-10606424 None:intergenic 50.0%
!!! GAGGTGGCCTTGCTCTTTTT+TGG - chr1.3:10606530-10606549 MS.gene86275:CDS 50.0%
AACACGTTGCACAGCACCAG+GGG + chr1.3:10605310-10605329 None:intergenic 55.0%
AAGACGTAGAAGGGCTGCGT+GGG - chr1.3:10606669-10606688 MS.gene86275:intron 55.0%
ACAACACGTTGCACAGCACC+AGG + chr1.3:10605312-10605331 None:intergenic 55.0%
AGACGTTCTTCAACCGCACG+TGG + chr1.3:10606904-10606923 None:intergenic 55.0%
AGCTCTCACGGATGGGACAA+GGG - chr1.3:10606043-10606062 MS.gene86275:intron 55.0%
CAACACGTTGCACAGCACCA+GGG + chr1.3:10605311-10605330 None:intergenic 55.0%
CGGTGAGTCTCCACTTACCA+TGG + chr1.3:10606627-10606646 None:intergenic 55.0%
GAAGCGGAAGCGAATGTTGG+CGG - chr1.3:10606124-10606143 MS.gene86275:intron 55.0%
GACCTGTTGTCCGTCGTGTT+GGG - chr1.3:10605691-10605710 MS.gene86275:intron 55.0%
GATCGTAGTGGTAGAGGAGG+TGG - chr1.3:10606514-10606533 MS.gene86275:CDS 55.0%
GCAACTCTACACCCCACTCA+CGG + chr1.3:10605671-10605690 None:intergenic 55.0%
GCCCTTCTACGTCTTCCTTC+AGG + chr1.3:10606664-10606683 None:intergenic 55.0%
GCGCGTCTGACATGGTTATG+TGG - chr1.3:10607172-10607191 MS.gene86275:CDS 55.0%
GGACTGCTGCCACTAACAGA+TGG - chr1.3:10605712-10605731 MS.gene86275:intron 55.0%
GTTGAGCCGACCACCTAGAT+TGG + chr1.3:10605841-10605860 None:intergenic 55.0%
TACCTGCAGCTCTCACGGAT+GGG - chr1.3:10606036-10606055 MS.gene86275:intron 55.0%
TGGCAGGTACGAGCAACCAA+TGG - chr1.3:10605522-10605541 MS.gene86275:intron 55.0%
TTACCTGCAGCTCTCACGGA+TGG - chr1.3:10606035-10606054 MS.gene86275:intron 55.0%
! GCTGCCAAAGTGCTCGATGA+AGG - chr1.3:10605240-10605259 MS.gene86275:CDS 55.0%
! GGAGACTCACCGGCTACTAT+AGG - chr1.3:10606635-10606654 MS.gene86275:CDS 55.0%
! TTGGTGGATGTTCCGGTGGA+AGG - chr1.3:10606844-10606863 MS.gene86275:CDS 55.0%
!! AGGTTTGGTGGATGTTCCGG+TGG - chr1.3:10606840-10606859 MS.gene86275:CDS 55.0%
!! TGATGACGGTGTCCGTGAGT+GGG - chr1.3:10605656-10605675 MS.gene86275:intron 55.0%
CAGCTCTCACGGATGGGACA+AGG - chr1.3:10606042-10606061 MS.gene86275:intron 60.0%
CGACCTGTTGTCCGTCGTGT+TGG - chr1.3:10605690-10605709 MS.gene86275:intron 60.0%
CTCTGATGATCAGGCCTGCC+GGG - chr1.3:10606310-10606329 MS.gene86275:CDS 60.0%
GAAGACGTAGAAGGGCTGCG+TGG - chr1.3:10606668-10606687 MS.gene86275:intron 60.0%
GCTCTGATGATCAGGCCTGC+CGG - chr1.3:10606309-10606328 MS.gene86275:CDS 60.0%
GGTTGCTTGCGCGTCTGACA+TGG - chr1.3:10607164-10607183 MS.gene86275:CDS 60.0%
GTCCCAACACGACGGACAAC+AGG + chr1.3:10605696-10605715 None:intergenic 60.0%
TGGCAGCAGTCCCAACACGA+CGG + chr1.3:10605704-10605723 None:intergenic 60.0%
! GATGACGGTGTCCGTGAGTG+GGG - chr1.3:10605657-10605676 MS.gene86275:intron 60.0%
!! CTGATGACGGTGTCCGTGAG+TGG - chr1.3:10605655-10605674 MS.gene86275:intron 60.0%
GTCCCATCCGTGAGAGCTGC+AGG + chr1.3:10606041-10606060 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 10605234 10607271 10605234 ID=MS.gene86275
chr1.3 mRNA 10605234 10607271 10605234 ID=MS.gene86275.t1;Parent=MS.gene86275
chr1.3 exon 10606836 10607271 10606836 ID=MS.gene86275.t1.exon1;Parent=MS.gene86275.t1
chr1.3 CDS 10606836 10607271 10606836 ID=cds.MS.gene86275.t1;Parent=MS.gene86275.t1
chr1.3 exon 10606278 10606658 10606278 ID=MS.gene86275.t1.exon2;Parent=MS.gene86275.t1
chr1.3 CDS 10606278 10606658 10606278 ID=cds.MS.gene86275.t1;Parent=MS.gene86275.t1
chr1.3 exon 10605356 10605501 10605356 ID=MS.gene86275.t1.exon3;Parent=MS.gene86275.t1
chr1.3 CDS 10605356 10605501 10605356 ID=cds.MS.gene86275.t1;Parent=MS.gene86275.t1
chr1.3 exon 10605234 10605263 10605234 ID=MS.gene86275.t1.exon4;Parent=MS.gene86275.t1
chr1.3 CDS 10605234 10605263 10605234 ID=cds.MS.gene86275.t1;Parent=MS.gene86275.t1
Gene Sequence

>MS.gene86275

ATGGATGCTGCCAAAGTGCTCGATGAAGGTCCATGGGTGTATGATAGTTTTCATATCGTTGTTGATAGAATTGCCCCTGGTGCTGTGCAACGTGTTGTGCCTCTGAACCATATTGATTTTTGGGTGCAAGTCCATGGTTTACCCTTTGATTTCATCCAACAAAGGGTTGGTCAAGGCATTGGTCAATTCCTTGGCGAAATGAAATTGTACGACAACCGTAACACAATTCACAGCTTCTTTATGCGGTTAAAGGTTAGAATTGACATCACTCGTCCAATGAAAAAACAGTGGCAGGTACGAGCAACCAATGGTGCCTATATTACTATTCACTTTAAGTATGAGAAGCTGGGAGTTTTATGCTATAGGTGTGGCCTTCTCGGTCATACTGACAAGGTATGTCCTAATCTATTTGAGTTGGATTCTGATGACGGTGTCCGTGAGTGGGGTGTAGAGTTGCGACCTGTTGTCCGTCGTGTTGGGACTGCTGCCACTAACAGATGGTTGCAAAACCCTATACCATCTGTTGTGCCGAGAACTGATAATGCTTTTTGAGGAACACATGTTGGTACTTCTAACACTGCTGATGATGGTAATGTGAATATTTCCAATCTAGGTGGTCGGCTCAACCCTCTGCATAATGAGATTAATTCTATCAATAATGGTATTATGATTGTTCAAAACAACTCGTTGGCCAAGAGTGGTAACGCTATTACTGCTGTGCATCTAAATTCTGCTCTTCCTTCCTCATCTGCGAGTACTTCTGCTACTGTTCTCAATATCTCCAAACCTGTTGTGCTGAGTTTACCTGCAGCTCTCACGGATGGGACAAGGGCTGAGAATGTTACTGCTCCTAATGAGTCTGAAGCTGAGGATATCAGGTCAGAAATGAAGAAGCGGAAGCGAATGTTGGCGGAATGTCTTCAAGGTGGTGCTCTTCAAAATGATATTGAGTTTTCTTTTGTTGTTGATGGGGTTAATGGGGATACTGAACTAGGTTATAATGTTAGTGAGAGGGGTGATATTGTAATGAATGTTTGTGACAATACTTTGTTTCAAAGTAATGATGTATTGACAGGCTCTGATGATCAGGCCTGCCGGGATAAATGAGTCTGATAGGATGGAATTGCAGGGGTTTAGGTCGCCCGAATGCAATTCCAGATTTAAAGTACCTAGTTCGGCACTTCAATTCGGACCTCTTGTTCTTAAGCGAGACACTAGTCTCCCGCAATAAAATTGAAGATTTACGTTATTTGCTTGGTTTTGATTTTTGCTTTTCTGTTGATCGTAGTGGTAGAGGAGGTGGCCTTGCTCTTTTTTGGCGCACTTCTTTTAGTTTTCAAATTGTAAATTACTCAAATAATCATATTTATGTTGATGTTAATGATGTTGTCCATGGTAAGTGGAGACTCACCGGCTACTATAGGTACCCTGAAGGAAGACGTAGAAGGGCTGCGTGGGATTTCCTTCGTCAATTATCTAATCAGTTTGCAGGTCCTTGGTGTATACTAGGCGACTTTAATGATATTATGGATGCTAGTGAAAAAAGGGGAAAAAATCTTCAACCTAACTGGTTGATAAATGGTTTCCGACAAGCGATTATTGATACAGGTTTGGTGGATGTTCCGGTGGAAGGATATCCTTTCACTTGGTTCAAAAGTTTGGGAACACCACGTGCGGTTGAAGAACGTCTTGATAGAGCCCTCGCCAATAATCATTGGTTTAATCTCTTTCCTACGGCTACTCTGGAGAATCTTGCTGCCCCATCTTCAGATCACTATCCCATCCTTTTGAACAGATGTTTGATGCATCGTCCTCATCTTCAAAAGCGTGGTTTTCGATACGAAAATGCGTGGTATTTTGAACCAGGTTTCAAGGAGCTTGTTACTGATGCATGGCACACACAATTTGCATTTTCGGTAGTAGCTAAATTGGTTGCTTGCGCGTCTGACATGGTTATGTGGAGTAGGAAGCATTGCAATAAGCTGAAGGGTGATATTGAAGAGTGCAGGCGTCAGATTCAAAACATCAGGTTGAATAG
Protein sequence

>MS.gene86275.t1

MDAAKVLDEGPWVYDSFHIVVDRIAPGAVQRVVPLNHIDFWVQVHGLPFDFIQQRVGQGIGQFLGEMKLYDNRNTIHSFFMRLKVRIDITRPMKKQWQVRATNGAYITIHFKYEKLGVLCYRCGLLGHTDKVCPNLFELDSDDGVRGRLNPLHNEINSINNGIMIVQNNSLAKSGNAITAVHLNSALPSSSASTSATVLNISKPVVLSLPAALTDGTRAENVTAPNESEAEDIRSEMKKRKRMLAECLQGGALQNDIEFSFVVDGVNGDTELDHYPILLNRCLMHRPHLQKRGFRYENAWYFEPGFKELVTDAWHTQFAFSASDSKHQVE