Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037634.t1 | AES70414.1 | 60.5 | 281 | 94 | 2 | 31 | 295 | 1 | 280 | 7.90E-89 | 337.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037634.t1 | G7J017 | 60.5 | 281 | 94 | 2 | 31 | 295 | 1 | 280 | 5.7e-89 | 337.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037634.t1 | MTR_3g053920 | 64.413 | 281 | 83 | 2 | 31 | 295 | 1 | 280 | 1.79e-124 | 359 |
| MS.gene037634.t1 | MTR_2g061500 | 82.946 | 129 | 22 | 0 | 31 | 159 | 1 | 129 | 6.46e-77 | 233 |
| MS.gene037634.t1 | MTR_4g103530 | 58.919 | 185 | 67 | 2 | 85 | 263 | 1 | 182 | 1.16e-69 | 216 |
| MS.gene037634.t1 | MTR_7g011710 | 64.000 | 100 | 34 | 1 | 85 | 182 | 1 | 100 | 1.70e-37 | 132 |
| MS.gene037634.t1 | MTR_8g463110 | 60.000 | 120 | 46 | 1 | 238 | 355 | 1 | 120 | 3.49e-32 | 127 |
| MS.gene037634.t1 | MTR_6g033215 | 30.952 | 168 | 108 | 3 | 5 | 169 | 70 | 232 | 6.63e-20 | 89.0 |
| MS.gene037634.t1 | MTR_0010s0370 | 31.915 | 141 | 94 | 1 | 38 | 176 | 4 | 144 | 1.67e-19 | 85.5 |
| MS.gene037634.t1 | MTR_0010s0350 | 31.915 | 141 | 94 | 1 | 38 | 176 | 4 | 144 | 1.67e-19 | 85.5 |
| MS.gene037634.t1 | MTR_1g036720 | 32.110 | 109 | 72 | 1 | 37 | 143 | 3 | 111 | 6.25e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTGAACACTGCTTAAT+TGG | 0.191846 | 4.3:+79878413 | MS.gene037634:CDS |
| CACTGAACCATATCGACTTT+TGG | 0.243235 | 4.3:+79878669 | MS.gene037634:CDS |
| AGTCGATGCTGCACGTGTTT+TGG | 0.243919 | 4.3:+79878568 | MS.gene037634:CDS |
| CTGATGATGGTGTTCGTAAT+TGG | 0.249930 | 4.3:+79878990 | MS.gene037634:CDS |
| TGTTGCTGCTGAAGGGGATA+TGG | 0.277342 | 4.3:+79879474 | MS.gene037634:CDS |
| CATATACCTTGACCTACTTT+TGG | 0.284791 | 4.3:-79878728 | None:intergenic |
| GTACCAAGCCTTTGTGTAAC+TGG | 0.294565 | 4.3:-79879028 | None:intergenic |
| GCTGAGACACTCGGGGAAAA+TGG | 0.299796 | 4.3:+79879400 | MS.gene037634:CDS |
| AGACATACGCTCATTGAAAT+AGG | 0.325642 | 4.3:-79878468 | None:intergenic |
| CCCTCAGGTGCTGCTTCTGC+TGG | 0.338586 | 4.3:+79879112 | MS.gene037634:CDS |
| GCTCATTGAAATAGGAAAAC+TGG | 0.345149 | 4.3:-79878460 | None:intergenic |
| TTCAAGGATTGCAGCAGTTT+CGG | 0.352785 | 4.3:-79878399 | None:intergenic |
| CCTGAACCCAAAAGTCGATA+TGG | 0.359118 | 4.3:-79878676 | None:intergenic |
| GCAGTGGAATCACTTGAAAA+TGG | 0.363720 | 4.3:-79879379 | None:intergenic |
| CTGTTGAGATTGAGGTTTGA+AGG | 0.397271 | 4.3:-79878329 | None:intergenic |
| CAGGTTCATGGTCTGCCATT+CGG | 0.401961 | 4.3:+79878695 | MS.gene037634:CDS |
| AGATGCGATCCATGGCAATA+TGG | 0.412574 | 4.3:-79878619 | None:intergenic |
| TGCGGCAAAGTGGCAGGAAT+AGG | 0.419167 | 4.3:-79879079 | None:intergenic |
| CCAAGCACTACGGGGCGGTC+TGG | 0.419618 | 4.3:-79879343 | None:intergenic |
| CCAGACCGCCCCGTAGTGCT+TGG | 0.427654 | 4.3:+79879343 | MS.gene037634:CDS |
| TGATGATGGTGTTCGTAATT+GGG | 0.428903 | 4.3:+79878991 | MS.gene037634:CDS |
| AAGTTAGACTGTTGAGATTG+AGG | 0.433882 | 4.3:-79878337 | None:intergenic |
| GTGATCGTAACCAGCTTGCC+TGG | 0.434448 | 4.3:-79878503 | None:intergenic |
| ATAACGATCAGACACAGATT+TGG | 0.440874 | 4.3:-79878525 | None:intergenic |
| TGGTCGCGTCATTGCTGATC+GGG | 0.444703 | 4.3:+79878433 | MS.gene037634:CDS |
| GCGGCAAAGTGGCAGGAATA+GGG | 0.450277 | 4.3:-79879078 | None:intergenic |
| AGTCTAACTTTGTCTGAAGA+TGG | 0.455151 | 4.3:+79878350 | MS.gene037634:CDS |
| GACCAATTAAGCAGTGTTCA+AGG | 0.462852 | 4.3:-79878415 | None:intergenic |
| CTCCTTCAGTAGCTTTATCT+CGG | 0.467722 | 4.3:-79879135 | None:intergenic |
| GCAGGTAAACCAAGCACTAC+GGG | 0.468576 | 4.3:-79879352 | None:intergenic |
| GCCATGGATCGCATCTCTCC+TGG | 0.471771 | 4.3:+79878626 | MS.gene037634:CDS |
| GGGGCGGTCTGGCAGCAAGC+TGG | 0.481494 | 4.3:-79879332 | None:intergenic |
| ATGGCTCAGAATTGAAGAAA+AGG | 0.485656 | 4.3:+79879419 | MS.gene037634:CDS |
| GATCAATCAGGTCGATTGGT+AGG | 0.488908 | 4.3:-79878307 | None:intergenic |
| CAGTTTCGGTTTCAGACTCA+AGG | 0.494577 | 4.3:-79878385 | None:intergenic |
| GAAGAAAAGGAAGCGTATGC+TGG | 0.495837 | 4.3:+79879432 | MS.gene037634:CDS |
| TCACTTGAAAATGGAGCAGC+AGG | 0.497114 | 4.3:-79879370 | None:intergenic |
| TGAGGTTTGAAGGATCAATC+AGG | 0.505308 | 4.3:-79878319 | None:intergenic |
| TTGGTCGCGTCATTGCTGAT+CGG | 0.514480 | 4.3:+79878432 | MS.gene037634:CDS |
| TGGTTCAGTGGAACGAAACT+AGG | 0.517395 | 4.3:-79878656 | None:intergenic |
| GATTCCACTGCTGAGACACT+CGG | 0.520086 | 4.3:+79879391 | MS.gene037634:CDS |
| ATGTCTCGTGCATGGAAGCC+AGG | 0.520191 | 4.3:+79878485 | MS.gene037634:CDS |
| GTTGCTGCTGAAGGGGATAT+GGG | 0.523998 | 4.3:+79879475 | MS.gene037634:CDS |
| TAGGTTCAAATGTTAGTCAT+GGG | 0.524354 | 4.3:+79879509 | MS.gene037634:CDS |
| TGCTGCCCAAAATGCAGTGT+TGG | 0.525305 | 4.3:+79879234 | MS.gene037634:CDS |
| GAAGTACTTGTGGAAGAAGA+AGG | 0.527311 | 4.3:-79879304 | None:intergenic |
| CGTATGCTGGCTCTTCAGAA+TGG | 0.528478 | 4.3:+79879445 | MS.gene037634:CDS |
| ATTCCACTGCTGAGACACTC+GGG | 0.530646 | 4.3:+79879392 | MS.gene037634:CDS |
| GAAGGATCAATCAGGTCGAT+TGG | 0.535211 | 4.3:-79878311 | None:intergenic |
| AGCAGGTAAACCAAGCACTA+CGG | 0.537875 | 4.3:-79879353 | None:intergenic |
| GGATTTATCCAACCAAAAGT+AGG | 0.542409 | 4.3:+79878716 | MS.gene037634:CDS |
| TGCATGGAAGCCAGGCAAGC+TGG | 0.543639 | 4.3:+79878493 | MS.gene037634:CDS |
| GAGAAATTGTTGCTGCTGAA+GGG | 0.546903 | 4.3:+79879467 | MS.gene037634:CDS |
| GCCAGCAGAAGCAGCACCTG+AGG | 0.547365 | 4.3:-79879113 | None:intergenic |
| TTTGAATTAGATGCTGATGA+TGG | 0.550054 | 4.3:+79878977 | MS.gene037634:intron |
| ATAGGTTCAAATGTTAGTCA+TGG | 0.550331 | 4.3:+79879508 | MS.gene037634:CDS |
| CCGCAACAAAATCACCCCTC+AGG | 0.555073 | 4.3:+79879097 | MS.gene037634:CDS |
| GGAGAAATTGTTGCTGCTGA+AGG | 0.555884 | 4.3:+79879466 | MS.gene037634:CDS |
| CCAGCAGAAGCAGCACCTGA+GGG | 0.557230 | 4.3:-79879112 | None:intergenic |
| ATCAATCAGGTCGATTGGTA+GGG | 0.561832 | 4.3:-79878306 | None:intergenic |
| GCTGGAAGCTGAAGTACTTG+TGG | 0.564238 | 4.3:-79879314 | None:intergenic |
| ACCAGGAGAGATGCGATCCA+TGG | 0.580677 | 4.3:-79878627 | None:intergenic |
| AAACCAGTTACACAAAGGCT+TGG | 0.585795 | 4.3:+79879025 | MS.gene037634:CDS |
| ATCCAACCAAAAGTAGGTCA+AGG | 0.590347 | 4.3:+79878722 | MS.gene037634:CDS |
| GTACCGCTGCTACAAACCGT+TGG | 0.591833 | 4.3:+79879047 | MS.gene037634:CDS |
| TTCCCCGAGTGTCTCAGCAG+TGG | 0.597857 | 4.3:-79879395 | None:intergenic |
| AATCAGGTCGATTGGTAGGG+AGG | 0.598339 | 4.3:-79878303 | None:intergenic |
| TAACCAACGGTTTGTAGCAG+CGG | 0.602009 | 4.3:-79879050 | None:intergenic |
| GTGACTGAAATGCAAGCATA+CGG | 0.603828 | 4.3:-79879183 | None:intergenic |
| AGATAAAGCTACTGAAGGAG+TGG | 0.608826 | 4.3:+79879138 | MS.gene037634:CDS |
| TGACAACTTCCATATTGCCA+TGG | 0.609463 | 4.3:+79878610 | MS.gene037634:CDS |
| ACGAAACTAGGAACGACACC+AGG | 0.609713 | 4.3:-79878644 | None:intergenic |
| ATGGAAGTTGTCATACAACC+AGG | 0.615320 | 4.3:-79878600 | None:intergenic |
| GATAAAGCTACTGAAGGAGT+GGG | 0.619336 | 4.3:+79879139 | MS.gene037634:CDS |
| ATGAGCGTATGTCTCGTGCA+TGG | 0.619840 | 4.3:+79878477 | MS.gene037634:CDS |
| AGGTTCAAATGTTAGTCATG+GGG | 0.624100 | 4.3:+79879510 | MS.gene037634:CDS |
| GGCCGAGATAAAGCTACTGA+AGG | 0.629518 | 4.3:+79879133 | MS.gene037634:CDS |
| GGTTCAAATGTTAGTCATGG+GGG | 0.629747 | 4.3:+79879511 | MS.gene037634:CDS |
| GATGATGGTGTTCGTAATTG+GGG | 0.637024 | 4.3:+79878992 | MS.gene037634:CDS |
| GAATAGGGTCTTGTAACCAA+CGG | 0.648046 | 4.3:-79879063 | None:intergenic |
| CAGCAGAAGCAGCACCTGAG+GGG | 0.653999 | 4.3:-79879111 | None:intergenic |
| AGAAATTGTTGCTGCTGAAG+GGG | 0.656638 | 4.3:+79879468 | MS.gene037634:CDS |
| CAAAAGTCGATATGGTTCAG+TGG | 0.660526 | 4.3:-79878668 | None:intergenic |
| TTTGGTTGGATAAATCCGAA+TGG | 0.663612 | 4.3:-79878710 | None:intergenic |
| GTTCAAATGTTAGTCATGGG+GGG | 0.672600 | 4.3:+79879512 | MS.gene037634:CDS |
| TTCCACTGCTGAGACACTCG+GGG | 0.694625 | 4.3:+79879393 | MS.gene037634:CDS |
| ATCTGAAACCAGTTACACAA+AGG | 0.696662 | 4.3:+79879020 | MS.gene037634:CDS |
| TGGAAGTTGTCATACAACCA+GGG | 0.712324 | 4.3:-79878599 | None:intergenic |
| CAGGTAAACCAAGCACTACG+GGG | 0.716858 | 4.3:-79879351 | None:intergenic |
| GGAAACGTTGAGGAAACGCG+AGG | 0.721758 | 4.3:-79878282 | None:intergenic |
| GTAAACCAAGCACTACGGGG+CGG | 0.736175 | 4.3:-79879348 | None:intergenic |
| TTGGTAGGGAGGAAACGTTG+AGG | 0.772168 | 4.3:-79878292 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAAATATGAAAAATT+GGG | + | chr4.3:79878896-79878915 | MS.gene037634:intron | 10.0% |
| !! | CAATTTCAAATATGAAAAAT+TGG | + | chr4.3:79878895-79878914 | MS.gene037634:intron | 15.0% |
| ATAGGTTCAAATGTTAGTCA+TGG | + | chr4.3:79879508-79879527 | MS.gene037634:CDS | 30.0% | |
| CAAGGTATATGAAGTTTCTT+AGG | + | chr4.3:79878740-79878759 | MS.gene037634:intron | 30.0% | |
| GCATCTAATTCAAACAATTC+AGG | - | chr4.3:79878971-79878990 | None:intergenic | 30.0% | |
| TAGGTTCAAATGTTAGTCAT+GGG | + | chr4.3:79879509-79879528 | MS.gene037634:CDS | 30.0% | |
| TTTGAATTAGATGCTGATGA+TGG | + | chr4.3:79878977-79878996 | MS.gene037634:intron | 30.0% | |
| ! | GATATGGGAACTTTTGTAAT+AGG | + | chr4.3:79879490-79879509 | MS.gene037634:CDS | 30.0% |
| AAGTTAGACTGTTGAGATTG+AGG | - | chr4.3:79878340-79878359 | None:intergenic | 35.0% | |
| AGACATACGCTCATTGAAAT+AGG | - | chr4.3:79878471-79878490 | None:intergenic | 35.0% | |
| AGGAGCTATGGATAGTATTT+CGG | - | chr4.3:79878787-79878806 | None:intergenic | 35.0% | |
| AGGTTCAAATGTTAGTCATG+GGG | + | chr4.3:79879510-79879529 | MS.gene037634:CDS | 35.0% | |
| AGTCTAACTTTGTCTGAAGA+TGG | + | chr4.3:79878350-79878369 | MS.gene037634:CDS | 35.0% | |
| ATAACGATCAGACACAGATT+TGG | - | chr4.3:79878528-79878547 | None:intergenic | 35.0% | |
| ATCCTTGAACACTGCTTAAT+TGG | + | chr4.3:79878413-79878432 | MS.gene037634:CDS | 35.0% | |
| ATGGCTCAGAATTGAAGAAA+AGG | + | chr4.3:79879419-79879438 | MS.gene037634:CDS | 35.0% | |
| GCTCATTGAAATAGGAAAAC+TGG | - | chr4.3:79878463-79878482 | None:intergenic | 35.0% | |
| GGATTTATCCAACCAAAAGT+AGG | + | chr4.3:79878716-79878735 | MS.gene037634:CDS | 35.0% | |
| TTTGGTTGGATAAATCCGAA+TGG | - | chr4.3:79878713-79878732 | None:intergenic | 35.0% | |
| ! | AATTGGGTGTTTTCTGTCAT+AGG | + | chr4.3:79878912-79878931 | MS.gene037634:intron | 35.0% |
| ! | ATCTGAAACCAGTTACACAA+AGG | + | chr4.3:79879020-79879039 | MS.gene037634:CDS | 35.0% |
| ! | CATATACCTTGACCTACTTT+TGG | - | chr4.3:79878731-79878750 | None:intergenic | 35.0% |
| ! | TTTAGCCAACACTGCATTTT+GGG | - | chr4.3:79879242-79879261 | None:intergenic | 35.0% |
| ! | TTTTAGCCAACACTGCATTT+TGG | - | chr4.3:79879243-79879262 | None:intergenic | 35.0% |
| !! | AATGCAGTGTTGGCTAAAAA+AGG | + | chr4.3:79879244-79879263 | MS.gene037634:CDS | 35.0% |
| !! | GTGTTGGCTAAAAAAGGTAA+TGG | + | chr4.3:79879250-79879269 | MS.gene037634:CDS | 35.0% |
| !! | TGATGATGGTGTTCGTAATT+GGG | + | chr4.3:79878991-79879010 | MS.gene037634:CDS | 35.0% |
| !!! | ACTGAACCATATCGACTTTT+GGG | + | chr4.3:79878670-79878689 | MS.gene037634:CDS | 35.0% |
| AAACCAGTTACACAAAGGCT+TGG | + | chr4.3:79879025-79879044 | MS.gene037634:CDS | 40.0% | |
| AGAAATTGTTGCTGCTGAAG+GGG | + | chr4.3:79879468-79879487 | MS.gene037634:CDS | 40.0% | |
| AGATAAAGCTACTGAAGGAG+TGG | + | chr4.3:79879138-79879157 | MS.gene037634:CDS | 40.0% | |
| ATCAATCAGGTCGATTGGTA+GGG | - | chr4.3:79878309-79878328 | None:intergenic | 40.0% | |
| ATCCAACCAAAAGTAGGTCA+AGG | + | chr4.3:79878722-79878741 | MS.gene037634:CDS | 40.0% | |
| ATGGAAGTTGTCATACAACC+AGG | - | chr4.3:79878603-79878622 | None:intergenic | 40.0% | |
| CAAAAGTCGATATGGTTCAG+TGG | - | chr4.3:79878671-79878690 | None:intergenic | 40.0% | |
| CTGTTGAGATTGAGGTTTGA+AGG | - | chr4.3:79878332-79878351 | None:intergenic | 40.0% | |
| GACCAATTAAGCAGTGTTCA+AGG | - | chr4.3:79878418-79878437 | None:intergenic | 40.0% | |
| GAGAAATTGTTGCTGCTGAA+GGG | + | chr4.3:79879467-79879486 | MS.gene037634:CDS | 40.0% | |
| GATAAAGCTACTGAAGGAGT+GGG | + | chr4.3:79879139-79879158 | MS.gene037634:CDS | 40.0% | |
| GCAGTGGAATCACTTGAAAA+TGG | - | chr4.3:79879382-79879401 | None:intergenic | 40.0% | |
| GGTTCAAATGTTAGTCATGG+GGG | + | chr4.3:79879511-79879530 | MS.gene037634:CDS | 40.0% | |
| GTGACTGAAATGCAAGCATA+CGG | - | chr4.3:79879186-79879205 | None:intergenic | 40.0% | |
| GTTCAAATGTTAGTCATGGG+GGG | + | chr4.3:79879512-79879531 | MS.gene037634:CDS | 40.0% | |
| TCGGCTATCATATGCTTTGA+AGG | - | chr4.3:79878768-79878787 | None:intergenic | 40.0% | |
| TGACAACTTCCATATTGCCA+TGG | + | chr4.3:79878610-79878629 | MS.gene037634:CDS | 40.0% | |
| TGAGGTTTGAAGGATCAATC+AGG | - | chr4.3:79878322-79878341 | None:intergenic | 40.0% | |
| TGGAAGTTGTCATACAACCA+GGG | - | chr4.3:79878602-79878621 | None:intergenic | 40.0% | |
| TGTCATAGGTGCGAATTGAT+CGG | + | chr4.3:79878926-79878945 | MS.gene037634:intron | 40.0% | |
| TTCAAGGATTGCAGCAGTTT+CGG | - | chr4.3:79878402-79878421 | None:intergenic | 40.0% | |
| ! | GAAGTACTTGTGGAAGAAGA+AGG | - | chr4.3:79879307-79879326 | None:intergenic | 40.0% |
| ! | GAATAGGGTCTTGTAACCAA+CGG | - | chr4.3:79879066-79879085 | None:intergenic | 40.0% |
| ! | GATGATGGTGTTCGTAATTG+GGG | + | chr4.3:79878992-79879011 | MS.gene037634:CDS | 40.0% |
| !! | CTCCTTCAGTAGCTTTATCT+CGG | - | chr4.3:79879138-79879157 | None:intergenic | 40.0% |
| !! | CTGATGATGGTGTTCGTAAT+TGG | + | chr4.3:79878990-79879009 | MS.gene037634:CDS | 40.0% |
| !! | TACCTTGACCTACTTTTGGT+TGG | - | chr4.3:79878727-79878746 | None:intergenic | 40.0% |
| !!! | CACTGAACCATATCGACTTT+TGG | + | chr4.3:79878669-79878688 | MS.gene037634:CDS | 40.0% |
| AGATGCGATCCATGGCAATA+TGG | - | chr4.3:79878622-79878641 | None:intergenic | 45.0% | |
| AGCAGGTAAACCAAGCACTA+CGG | - | chr4.3:79879356-79879375 | None:intergenic | 45.0% | |
| ATAGCTCCTACATGCGTGTT+AGG | + | chr4.3:79878798-79878817 | MS.gene037634:intron | 45.0% | |
| CAGTTTCGGTTTCAGACTCA+AGG | - | chr4.3:79878388-79878407 | None:intergenic | 45.0% | |
| CCTGAACCCAAAAGTCGATA+TGG | - | chr4.3:79878679-79878698 | None:intergenic | 45.0% | |
| CTGTTCCGCTGAAAAAAGAG+TGG | + | chr4.3:79878837-79878856 | MS.gene037634:intron | 45.0% | |
| GAAGGATCAATCAGGTCGAT+TGG | - | chr4.3:79878314-79878333 | None:intergenic | 45.0% | |
| GATCAATCAGGTCGATTGGT+AGG | - | chr4.3:79878310-79878329 | None:intergenic | 45.0% | |
| GGAGAAATTGTTGCTGCTGA+AGG | + | chr4.3:79879466-79879485 | MS.gene037634:CDS | 45.0% | |
| GTACCAAGCCTTTGTGTAAC+TGG | - | chr4.3:79879031-79879050 | None:intergenic | 45.0% | |
| TAACACGCATGTAGGAGCTA+TGG | - | chr4.3:79878799-79878818 | None:intergenic | 45.0% | |
| TAACCAACGGTTTGTAGCAG+CGG | - | chr4.3:79879053-79879072 | None:intergenic | 45.0% | |
| TAGCTCCTACATGCGTGTTA+GGG | + | chr4.3:79878799-79878818 | MS.gene037634:intron | 45.0% | |
| TCACTTGAAAATGGAGCAGC+AGG | - | chr4.3:79879373-79879392 | None:intergenic | 45.0% | |
| TGGTTCAGTGGAACGAAACT+AGG | - | chr4.3:79878659-79878678 | None:intergenic | 45.0% | |
| ! | GAAGAAAAGGAAGCGTATGC+TGG | + | chr4.3:79879432-79879451 | MS.gene037634:CDS | 45.0% |
| ! | GTGATTTTGTTGCGGCAAAG+TGG | - | chr4.3:79879092-79879111 | None:intergenic | 45.0% |
| !!! | ACACGCCACTCTTTTTTCAG+CGG | - | chr4.3:79878845-79878864 | None:intergenic | 45.0% |
| !!! | CCATATCGACTTTTGGGTTC+AGG | + | chr4.3:79878676-79878695 | MS.gene037634:CDS | 45.0% |
| !!! | GACTTTTGGGTTCAGGTTCA+TGG | + | chr4.3:79878683-79878702 | MS.gene037634:CDS | 45.0% |
| AATCAGGTCGATTGGTAGGG+AGG | - | chr4.3:79878306-79878325 | None:intergenic | 50.0% | |
| ACGAAACTAGGAACGACACC+AGG | - | chr4.3:79878647-79878666 | None:intergenic | 50.0% | |
| ATGAGCGTATGTCTCGTGCA+TGG | + | chr4.3:79878477-79878496 | MS.gene037634:CDS | 50.0% | |
| ATGCGTGTTAGGGTTGCCAT+TGG | + | chr4.3:79878809-79878828 | MS.gene037634:intron | 50.0% | |
| ATTCCACTGCTGAGACACTC+GGG | + | chr4.3:79879392-79879411 | MS.gene037634:CDS | 50.0% | |
| CAGGTAAACCAAGCACTACG+GGG | - | chr4.3:79879354-79879373 | None:intergenic | 50.0% | |
| CAGGTTCATGGTCTGCCATT+CGG | + | chr4.3:79878695-79878714 | MS.gene037634:CDS | 50.0% | |
| GATTCCACTGCTGAGACACT+CGG | + | chr4.3:79879391-79879410 | MS.gene037634:CDS | 50.0% | |
| GCAGGTAAACCAAGCACTAC+GGG | - | chr4.3:79879355-79879374 | None:intergenic | 50.0% | |
| GGCCGAGATAAAGCTACTGA+AGG | + | chr4.3:79879133-79879152 | MS.gene037634:CDS | 50.0% | |
| GTTGCTGCTGAAGGGGATAT+GGG | + | chr4.3:79879475-79879494 | MS.gene037634:CDS | 50.0% | |
| TGCTGCCCAAAATGCAGTGT+TGG | + | chr4.3:79879234-79879253 | MS.gene037634:CDS | 50.0% | |
| TGGCGTGTTCGTGCTTCTAA+CGG | + | chr4.3:79878857-79878876 | MS.gene037634:intron | 50.0% | |
| TGTTGCTGCTGAAGGGGATA+TGG | + | chr4.3:79879474-79879493 | MS.gene037634:CDS | 50.0% | |
| TTGGTAGGGAGGAAACGTTG+AGG | - | chr4.3:79878295-79878314 | None:intergenic | 50.0% | |
| TTGGTCGCGTCATTGCTGAT+CGG | + | chr4.3:79878432-79878451 | MS.gene037634:CDS | 50.0% | |
| ! | AGTCGATGCTGCACGTGTTT+TGG | + | chr4.3:79878568-79878587 | MS.gene037634:CDS | 50.0% |
| ! | CCTGAGGGGTGATTTTGTTG+CGG | - | chr4.3:79879100-79879119 | None:intergenic | 50.0% |
| ! | GCTGGAAGCTGAAGTACTTG+TGG | - | chr4.3:79879317-79879336 | None:intergenic | 50.0% |
| ! | TTTTGTTGCGGCAAAGTGGC+AGG | - | chr4.3:79879088-79879107 | None:intergenic | 50.0% |
| !! | CGTATGCTGGCTCTTCAGAA+TGG | + | chr4.3:79879445-79879464 | MS.gene037634:CDS | 50.0% |
| ACCAGGAGAGATGCGATCCA+TGG | - | chr4.3:79878630-79878649 | None:intergenic | 55.0% | |
| ATGTCTCGTGCATGGAAGCC+AGG | + | chr4.3:79878485-79878504 | MS.gene037634:CDS | 55.0% | |
| CAGCGGAACAGTGACACCAA+TGG | - | chr4.3:79878828-79878847 | None:intergenic | 55.0% | |
| CCGCAACAAAATCACCCCTC+AGG | + | chr4.3:79879097-79879116 | MS.gene037634:CDS | 55.0% | |
| GCGGCAAAGTGGCAGGAATA+GGG | - | chr4.3:79879081-79879100 | None:intergenic | 55.0% | |
| GCTGAGACACTCGGGGAAAA+TGG | + | chr4.3:79879400-79879419 | MS.gene037634:CDS | 55.0% | |
| GGAAACGTTGAGGAAACGCG+AGG | - | chr4.3:79878285-79878304 | None:intergenic | 55.0% | |
| GGCAACCCTAACACGCATGT+AGG | - | chr4.3:79878807-79878826 | None:intergenic | 55.0% | |
| GTAAACCAAGCACTACGGGG+CGG | - | chr4.3:79879351-79879370 | None:intergenic | 55.0% | |
| GTACCGCTGCTACAAACCGT+TGG | + | chr4.3:79879047-79879066 | MS.gene037634:CDS | 55.0% | |
| GTGATCGTAACCAGCTTGCC+TGG | - | chr4.3:79878506-79878525 | None:intergenic | 55.0% | |
| TGCGGCAAAGTGGCAGGAAT+AGG | - | chr4.3:79879082-79879101 | None:intergenic | 55.0% | |
| TGGTCGCGTCATTGCTGATC+GGG | + | chr4.3:79878433-79878452 | MS.gene037634:CDS | 55.0% | |
| TTCCACTGCTGAGACACTCG+GGG | + | chr4.3:79879393-79879412 | MS.gene037634:CDS | 55.0% | |
| !! | GCTGCACGTGTTTTGGACGA+GGG | + | chr4.3:79878575-79878594 | MS.gene037634:CDS | 55.0% |
| !! | TGCTGCACGTGTTTTGGACG+AGG | + | chr4.3:79878574-79878593 | MS.gene037634:CDS | 55.0% |
| CAGCAGAAGCAGCACCTGAG+GGG | - | chr4.3:79879114-79879133 | None:intergenic | 60.0% | |
| CCAGCAGAAGCAGCACCTGA+GGG | - | chr4.3:79879115-79879134 | None:intergenic | 60.0% | |
| GCCATGGATCGCATCTCTCC+TGG | + | chr4.3:79878626-79878645 | MS.gene037634:CDS | 60.0% | |
| TGCATGGAAGCCAGGCAAGC+TGG | + | chr4.3:79878493-79878512 | MS.gene037634:CDS | 60.0% | |
| TTCCCCGAGTGTCTCAGCAG+TGG | - | chr4.3:79879398-79879417 | None:intergenic | 60.0% | |
| !! | GTGTTTTGGACGAGGGTCCC+TGG | + | chr4.3:79878582-79878601 | MS.gene037634:CDS | 60.0% |
| GCCAGCAGAAGCAGCACCTG+AGG | - | chr4.3:79879116-79879135 | None:intergenic | 65.0% | |
| !! | CCCTCAGGTGCTGCTTCTGC+TGG | + | chr4.3:79879112-79879131 | MS.gene037634:CDS | 65.0% |
| CCAAGCACTACGGGGCGGTC+TGG | - | chr4.3:79879346-79879365 | None:intergenic | 70.0% | |
| CCAGACCGCCCCGTAGTGCT+TGG | + | chr4.3:79879343-79879362 | MS.gene037634:CDS | 70.0% | |
| GGGGCGGTCTGGCAGCAAGC+TGG | - | chr4.3:79879335-79879354 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 79878233 | 79879546 | 79878233 | ID=MS.gene037634 |
| chr4.3 | mRNA | 79878233 | 79879546 | 79878233 | ID=MS.gene037634.t1;Parent=MS.gene037634 |
| chr4.3 | exon | 79878233 | 79878743 | 79878233 | ID=MS.gene037634.t1.exon1;Parent=MS.gene037634.t1 |
| chr4.3 | CDS | 79878233 | 79878743 | 79878233 | ID=cds.MS.gene037634.t1;Parent=MS.gene037634.t1 |
| chr4.3 | exon | 79878987 | 79879546 | 79878987 | ID=MS.gene037634.t1.exon2;Parent=MS.gene037634.t1 |
| chr4.3 | CDS | 79878987 | 79879546 | 79878987 | ID=cds.MS.gene037634.t1;Parent=MS.gene037634.t1 |
| Gene Sequence |
| Protein sequence |
