AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26038

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26038.t1 MTR_3g053920 39.572 187 102 5 1 179 83 266 8.27e-32 120
MS.gene26038.t1 MTR_8g463110 50.847 59 29 0 260 318 233 291 5.13e-13 70.1
MS.gene26038.t1 MTR_4g020630 49.153 59 30 0 260 318 169 227 2.06e-12 68.2
MS.gene26038.t1 MTR_6g034215 48.276 58 30 0 260 317 237 294 5.07e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 73 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCATGCCTTCCTATTAC+TGG 0.145005 7.4:-53874516 MS.gene26038:CDS
GCAGGTTCATAATGCTAATT+TGG 0.150094 7.4:-53873369 MS.gene26038:CDS
ACTTCTGACATGTCTAATTT+AGG 0.242580 7.4:-53874672 MS.gene26038:CDS
TGCCACAAAACATGGAATTT+TGG 0.252107 7.4:-53874616 MS.gene26038:CDS
AGAAGTCGCTTTACCATTCT+TGG 0.264082 7.4:+53874572 None:intergenic
TTGTGGCACTTACCTCATTA+TGG 0.265699 7.4:+53874631 None:intergenic
GAACCAACTTCTTCATTATT+AGG 0.288586 7.4:+53874405 None:intergenic
CCTGTTTGTGGCACACCATT+TGG 0.297899 7.4:+53874747 None:intergenic
GTCCTAGTGTTCATCGCTTT+GGG 0.312155 7.4:-53874806 MS.gene26038:CDS
CGTCCTAGTGTTCATCGCTT+TGG 0.321972 7.4:-53874807 MS.gene26038:CDS
CTTCTCAAGCCTATTGTGTT+AGG 0.329054 7.4:-53874486 MS.gene26038:CDS
AGAAGTTGCGACCCAGTAAT+AGG 0.352491 7.4:+53874504 None:intergenic
TAATTTGGTAATTCCGAAAC+TGG 0.356811 7.4:-53873354 MS.gene26038:CDS
GCGGCCACCCTTAGCATAAC+AGG 0.375010 7.4:-53874456 MS.gene26038:CDS
TGTGGCACACCATTTGGAAT+AGG 0.390833 7.4:+53874753 None:intergenic
AGACTCTTGATGATGGTCTA+TGG 0.391000 7.4:-53875203 MS.gene26038:CDS
AGGAGACCACACCTAGTTTC+CGG 0.395457 7.4:+53874909 None:intergenic
CATCAGAATCTAACTCAAAC+AGG 0.417926 7.4:+53874859 None:intergenic
CTGCTGTTACCTCCTGTTTG+TGG 0.420166 7.4:+53874735 None:intergenic
CCAAATGGTGTGCCACAAAC+AGG 0.420763 7.4:-53874747 MS.gene26038:CDS
GCCGCACAAAATGCCAGTTT+CGG 0.427576 7.4:+53873341 None:intergenic
AGATGAATATTGAAGATTGT+CGG 0.436388 7.4:-53873277 MS.gene26038:CDS
TAGGACACACCTTGTCAGTA+TGG 0.438804 7.4:+53874883 None:intergenic
GCATTTGGAACCAGGTTTCA+AGG 0.448622 7.4:-53873411 MS.gene26038:intron
TGTCCCGCGCAACGTCAGTT+TGG 0.453693 7.4:-53875133 MS.gene26038:CDS
TTTGAGTTAGATTCTGATGA+TGG 0.461818 7.4:-53874855 MS.gene26038:CDS
GAAAACTCTGTATCATTATG+AGG 0.464074 7.4:+53874330 None:intergenic
ACTAGTGACTGATGCTTGGC+AGG 0.470521 7.4:-53873387 MS.gene26038:CDS
GCGGGAATACCTAACACAAT+AGG 0.474429 7.4:+53874477 None:intergenic
TTGGTTCCGATTTGAAGAAA+AGG 0.480641 7.4:-53874389 MS.gene26038:CDS
TCGCTCTAATACCGGAAACT+AGG 0.486357 7.4:-53874920 MS.gene26038:CDS
CCTCATGCCTTCCTATTACT+GGG 0.492950 7.4:-53874515 MS.gene26038:CDS
GAATCTAACTCAAACAGGTT+AGG 0.494572 7.4:+53874864 None:intergenic
CTTCAACACCTGTTATGCTA+AGG 0.496554 7.4:+53874448 None:intergenic
GGAAGGCATGAGGATGAAGA+AGG 0.503575 7.4:+53874525 None:intergenic
TGGCAAATTCGCTCTAATAC+CGG 0.505891 7.4:-53874928 MS.gene26038:CDS
TGTTATGCTAAGGGTGGCCG+CGG 0.509274 7.4:+53874458 None:intergenic
GAAGAAAAGGAAGCTTATGT+TGG 0.510741 7.4:-53874376 MS.gene26038:CDS
TTCATTATTAGGCTCGGCAG+AGG 0.514076 7.4:+53874416 None:intergenic
GCTTTCAGTAGAAATGTTTG+TGG 0.514621 7.4:+53874695 None:intergenic
ATTCAAGATCCTATTCCAAA+TGG 0.515335 7.4:-53874762 MS.gene26038:CDS
AACTTCTTCATTATTAGGCT+CGG 0.529034 7.4:+53874410 None:intergenic
AGGAACTAGTGACTGATGCT+TGG 0.534609 7.4:-53873391 MS.gene26038:CDS
TGATGATGGTGTCCGTGAGT+GGG 0.536027 7.4:-53874841 MS.gene26038:CDS
GTGCGGCTGATATGGTGGCT+TGG 0.538056 7.4:-53873325 MS.gene26038:CDS
GAGGTAAGTGCCACAAAACA+TGG 0.543172 7.4:-53874624 MS.gene26038:CDS
CTGATGATGGTGTCCGTGAG+TGG 0.545373 7.4:-53874842 MS.gene26038:CDS
GGACTACTGCAACAAACAGA+TGG 0.549972 7.4:-53874785 MS.gene26038:CDS
GAGCCTAATAATGAAGAAGT+TGG 0.552878 7.4:-53874408 MS.gene26038:CDS
TGGTGTCCGTGAGTGGGGTG+TGG 0.560704 7.4:-53874835 MS.gene26038:CDS
GATCCAAACTGACGTTGCGC+GGG 0.563531 7.4:+53875130 None:intergenic
GTCATTGAACGAATTGCTCT+AGG 0.567302 7.4:-53875159 MS.gene26038:CDS
TTCAACACCTGTTATGCTAA+GGG 0.569952 7.4:+53874449 None:intergenic
ACATGTCTAATTTAGGTGGT+CGG 0.576173 7.4:-53874665 MS.gene26038:CDS
GTTGCTAAGACTCTTGATGA+TGG 0.586052 7.4:-53875210 MS.gene26038:CDS
AAGGAAAAGCATGATTAATG+TGG 0.586179 7.4:+53874544 None:intergenic
TGATCCAAACTGACGTTGCG+CGG 0.588176 7.4:+53875129 None:intergenic
GTCCCAAAGCGATGAACACT+AGG 0.592722 7.4:+53874804 None:intergenic
GCTCACTGTTGTCCATAATG+AGG 0.612656 7.4:-53874643 MS.gene26038:CDS
ACACCTTGTCAGTATGGTCG+AGG 0.622302 7.4:+53874889 None:intergenic
TCTGACATGTCTAATTTAGG+TGG 0.623949 7.4:-53874669 MS.gene26038:CDS
GTAACTCCACACCCCACTCA+CGG 0.629504 7.4:+53874829 None:intergenic
GATGATGGTGTCCGTGAGTG+GGG 0.630929 7.4:-53874840 MS.gene26038:CDS
GTTGCGACCCAGTAATAGGA+AGG 0.632749 7.4:+53874508 None:intergenic
GTTATGCTAAGGGTGGCCGC+GGG 0.643893 7.4:+53874459 None:intergenic
AACACCTGTTATGCTAAGGG+TGG 0.654874 7.4:+53874452 None:intergenic
CCCAGTAATAGGAAGGCATG+AGG 0.660879 7.4:+53874515 None:intergenic
CAAACAGGAGGTAACAGCAG+TGG 0.663709 7.4:-53874732 MS.gene26038:CDS
GGTCTCATGTGCTATTCGAA+CGG 0.663810 7.4:+53873237 None:intergenic
CTAATACCGGAAACTAGGTG+TGG 0.682986 7.4:-53874915 MS.gene26038:CDS
AATGGTGTGCCACAAACAGG+AGG 0.685102 7.4:-53874744 MS.gene26038:CDS
TCTCCTCGACCATACTGACA+AGG 0.687053 7.4:-53874892 MS.gene26038:CDS
TATTGTGTTAGGTATTCCCG+CGG 0.702010 7.4:-53874475 MS.gene26038:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACAATATTACAATTAAA+CGG + chr7.4:53874522-53874541 None:intergenic 10.0%
!! TAAATTGATTAGAGATTTAA+CGG + chr7.4:53874662-53874681 None:intergenic 15.0%
!! TTACAATATTACAATTAAAC+GGG + chr7.4:53874521-53874540 None:intergenic 15.0%
!! TAAATCTCTAATCAATTTAC+AGG - chr7.4:53874663-53874682 MS.gene26038:CDS 20.0%
!! TACAATATTACAATTAAACG+GGG + chr7.4:53874520-53874539 None:intergenic 20.0%
!!! ACATTTTGATTTTCATACAA+AGG + chr7.4:53874241-53874260 None:intergenic 20.0%
! AGATGAATATTGAAGATTGT+CGG - chr7.4:53875180-53875199 MS.gene26038:CDS 25.0%
! CAATAACATCAACAAAAATG+TGG + chr7.4:53874557-53874576 None:intergenic 25.0%
! CATACTTAAAATACCTAGTT+CGG - chr7.4:53874349-53874368 MS.gene26038:CDS 25.0%
! GAATATTTACGTTATTTGCT+TGG - chr7.4:53874429-53874448 MS.gene26038:CDS 25.0%
! TCACTTATGAATAATAAGTC+CGG + chr7.4:53874384-53874403 None:intergenic 25.0%
! TGAAAATCAAAATGTATCGA+CGG - chr7.4:53874246-53874265 MS.gene26038:intron 25.0%
! TTATGAAAATGAGTAGCATT+TGG - chr7.4:53875031-53875050 MS.gene26038:intron 25.0%
! TTTGTTGATGTTATTGATAC+TGG - chr7.4:53874561-53874580 MS.gene26038:CDS 25.0%
!!! TGGTGATTTTAATGATATCA+TGG - chr7.4:53874701-53874720 MS.gene26038:CDS 25.0%
AACTTCTTCATTATTAGGCT+CGG + chr7.4:53874050-53874069 None:intergenic 30.0%
ACTTCTGACATGTCTAATTT+AGG - chr7.4:53873785-53873804 MS.gene26038:intron 30.0%
ATTCAAGATCCTATTCCAAA+TGG - chr7.4:53873695-53873714 MS.gene26038:intron 30.0%
ATTGATTAGAGATTTAACGG+AGG + chr7.4:53874659-53874678 None:intergenic 30.0%
GAAAACTCTGTATCATTATG+AGG + chr7.4:53874130-53874149 None:intergenic 30.0%
GAACCAACTTCTTCATTATT+AGG + chr7.4:53874055-53874074 None:intergenic 30.0%
GACATCTATTCAAGAGAATA+GGG + chr7.4:53874974-53874993 None:intergenic 30.0%
TGTTCGAATTGGTTAATCAA+TGG - chr7.4:53874753-53874772 MS.gene26038:CDS 30.0%
TTGTAGGTGAAAATGTTAGT+GGG - chr7.4:53874182-53874201 MS.gene26038:intron 30.0%
TTTACGTGGTTCAAAAGTTT+GGG - chr7.4:53874834-53874853 MS.gene26038:CDS 30.0%
TTTGTAGGTGAAAATGTTAG+TGG - chr7.4:53874181-53874200 MS.gene26038:intron 30.0%
! AAACTTTTGAACCACGTAAA+CGG + chr7.4:53874834-53874853 None:intergenic 30.0%
! AAATCTGTTTTGTCCAAGAA+TGG - chr7.4:53873872-53873891 MS.gene26038:intron 30.0%
! AAGCTTCCTTTTCTTCAAAT+CGG + chr7.4:53874077-53874096 None:intergenic 30.0%
! AAGGAAAAGCATGATTAATG+TGG + chr7.4:53873916-53873935 None:intergenic 30.0%
! ATGGTTTACTCTTTTTCCTA+CGG - chr7.4:53874908-53874927 MS.gene26038:CDS 30.0%
! CTTTAATTTCTCCAAGAAAC+TGG + chr7.4:53873426-53873445 None:intergenic 30.0%
! GAAAATCAAAATGTATCGAC+GGG - chr7.4:53874247-53874266 MS.gene26038:intron 30.0%
! TAATTTGGTAATTCCGAAAC+TGG - chr7.4:53875103-53875122 MS.gene26038:intron 30.0%
! TTTGAGTTAGATTCTGATGA+TGG - chr7.4:53873602-53873621 MS.gene26038:intron 30.0%
!! CGAACTAGGTATTTTAAGTA+TGG + chr7.4:53874351-53874370 None:intergenic 30.0%
!! GTTAATGGGGATTATTTTGT+AGG - chr7.4:53874166-53874185 MS.gene26038:intron 30.0%
!!! AATTTGCCACTGATTTTTCA+AGG + chr7.4:53873518-53873537 None:intergenic 30.0%
!!! ATTTGCCACTGATTTTTCAA+GGG + chr7.4:53873517-53873536 None:intergenic 30.0%
AACGAAAACTACGTTTGTGA+AGG + chr7.4:53875013-53875032 None:intergenic 35.0%
ACATGTCTAATTTAGGTGGT+CGG - chr7.4:53873792-53873811 MS.gene26038:intron 35.0%
ATAGGGTAATGATCAGATGA+CGG + chr7.4:53874957-53874976 None:intergenic 35.0%
ATCAACCCTTGAAAAATCAG+TGG - chr7.4:53873509-53873528 MS.gene26038:intron 35.0%
CATCAGAATCTAACTCAAAC+AGG + chr7.4:53873601-53873620 None:intergenic 35.0%
CTAATCAATTTACAGGTCCA+TGG - chr7.4:53874670-53874689 MS.gene26038:CDS 35.0%
GAAGAAAAGGAAGCTTATGT+TGG - chr7.4:53874081-53874100 MS.gene26038:intron 35.0%
GAATCTAACTCAAACAGGTT+AGG + chr7.4:53873596-53873615 None:intergenic 35.0%
GAGCCTAATAATGAAGAAGT+TGG - chr7.4:53874049-53874068 MS.gene26038:intron 35.0%
GCAGGTTCATAATGCTAATT+TGG - chr7.4:53875088-53875107 MS.gene26038:intron 35.0%
GCTTTCAGTAGAAATGTTTG+TGG + chr7.4:53873765-53873784 None:intergenic 35.0%
GGACATCTATTCAAGAGAAT+AGG + chr7.4:53874975-53874994 None:intergenic 35.0%
GGTTGAAGAGAAACTTGATA+GGG - chr7.4:53874869-53874888 MS.gene26038:CDS 35.0%
GTCAGAATCTTTGTTCGAAT+TGG - chr7.4:53874742-53874761 MS.gene26038:CDS 35.0%
GTTTACGTGGTTCAAAAGTT+TGG - chr7.4:53874833-53874852 MS.gene26038:CDS 35.0%
TCTGACATGTCTAATTTAGG+TGG - chr7.4:53873788-53873807 MS.gene26038:intron 35.0%
TGAAACCAAAAGGTAATCCA+TGG + chr7.4:53873375-53873394 None:intergenic 35.0%
TGTAGGTGAAAATGTTAGTG+GGG - chr7.4:53874183-53874202 MS.gene26038:intron 35.0%
TTCAACACCTGTTATGCTAA+GGG + chr7.4:53874011-53874030 None:intergenic 35.0%
TTTGGATCATCTTGATCTGT+GGG - chr7.4:53873342-53873361 MS.gene26038:CDS 35.0%
! AACTTTTGAACCACGTAAAC+GGG + chr7.4:53874833-53874852 None:intergenic 35.0%
! CACAAAACATGGAATTTTGG+TGG - chr7.4:53873844-53873863 MS.gene26038:intron 35.0%
! CACCAAAATTCCATGTTTTG+TGG + chr7.4:53873846-53873865 None:intergenic 35.0%
! TGCCACAAAACATGGAATTT+TGG - chr7.4:53873841-53873860 MS.gene26038:intron 35.0%
! TTGGTTCCGATTTGAAGAAA+AGG - chr7.4:53874068-53874087 MS.gene26038:intron 35.0%
!! AATCAATGGCTTTAGACAAG+CGG - chr7.4:53874767-53874786 MS.gene26038:CDS 35.0%
!! TTTTAAGTATGGAATTGCGC+CGG + chr7.4:53874340-53874359 None:intergenic 35.0%
AAATCACCAAGAATGCACCA+TGG + chr7.4:53874690-53874709 None:intergenic 40.0%
CAAAGAGTGGGATAAGTGAT+CGG - chr7.4:53873400-53873419 MS.gene26038:CDS 40.0%
CGGTTGAAGAGAAACTTGAT+AGG - chr7.4:53874868-53874887 MS.gene26038:CDS 40.0%
CTTCAACACCTGTTATGCTA+AGG + chr7.4:53874012-53874031 None:intergenic 40.0%
CTTCTCAAGCCTATTGTGTT+AGG - chr7.4:53873971-53873990 MS.gene26038:intron 40.0%
CTTTGCTGGATGAAACCAAA+AGG + chr7.4:53873385-53873404 None:intergenic 40.0%
GATGTTATTGATACTGGTCG+TGG - chr7.4:53874567-53874586 MS.gene26038:CDS 40.0%
GGGCTCTTGCAAATAATGAA+TGG - chr7.4:53874889-53874908 MS.gene26038:CDS 40.0%
GTAGGTGAAAATGTTAGTGG+GGG - chr7.4:53874184-53874203 MS.gene26038:intron 40.0%
GTCATTGAACGAATTGCTCT+AGG - chr7.4:53873298-53873317 MS.gene26038:CDS 40.0%
GTTGCTAAGACTCTTGATGA+TGG - chr7.4:53873247-53873266 MS.gene26038:CDS 40.0%
GTTTGGATCATCTTGATCTG+TGG - chr7.4:53873341-53873360 MS.gene26038:CDS 40.0%
TAGGGTAATGATCAGATGAC+GGG + chr7.4:53874956-53874975 None:intergenic 40.0%
TATTGTGTTAGGTATTCCCG+CGG - chr7.4:53873982-53874001 MS.gene26038:intron 40.0%
TGGCAAATTCGCTCTAATAC+CGG - chr7.4:53873529-53873548 MS.gene26038:intron 40.0%
TTGTGGCACTTACCTCATTA+TGG + chr7.4:53873829-53873848 None:intergenic 40.0%
TTTAAGTATGGAATTGCGCC+GGG + chr7.4:53874339-53874358 None:intergenic 40.0%
! AATGAGTAGCATTTGGAACC+AGG - chr7.4:53875038-53875057 MS.gene26038:intron 40.0%
! AGAAGTCGCTTTACCATTCT+TGG + chr7.4:53873888-53873907 None:intergenic 40.0%
! AGAGTTTTCTTTTGCTGCTG+AGG - chr7.4:53874141-53874160 MS.gene26038:intron 40.0%
! AGTTTTCTTTTGCTGCTGAG+GGG - chr7.4:53874143-53874162 MS.gene26038:intron 40.0%
! GAGTTTTCTTTTGCTGCTGA+GGG - chr7.4:53874142-53874161 MS.gene26038:intron 40.0%
! TCTTTTTCCTACGGCTATCT+TGG - chr7.4:53874917-53874936 MS.gene26038:CDS 40.0%
!! AGACTCTTGATGATGGTCTA+TGG - chr7.4:53873254-53873273 MS.gene26038:CDS 40.0%
!! CAAGTCCATGGATTACCTTT+TGG - chr7.4:53873367-53873386 MS.gene26038:CDS 40.0%
!! TGTTTTTCAGTTGATCCCAG+TGG - chr7.4:53874462-53874481 MS.gene26038:CDS 40.0%
AAACTACGTTTGTGAAGGCG+AGG + chr7.4:53875008-53875027 None:intergenic 45.0%
AACACCTGTTATGCTAAGGG+TGG + chr7.4:53874008-53874027 None:intergenic 45.0%
AGAAGTTGCGACCCAGTAAT+AGG + chr7.4:53873956-53873975 None:intergenic 45.0%
AGGAACTAGTGACTGATGCT+TGG - chr7.4:53875066-53875085 MS.gene26038:intron 45.0%
AGGGTAATGATCAGATGACG+GGG + chr7.4:53874955-53874974 None:intergenic 45.0%
ATACTACGAGTACCCTGAAG+GGG - chr7.4:53874608-53874627 MS.gene26038:CDS 45.0%
ATGGATGCGAGCGAGAAAAA+GGG - chr7.4:53874720-53874739 MS.gene26038:CDS 45.0%
CCTATCAGAGTCATTTGACC+CGG + chr7.4:53874291-53874310 None:intergenic 45.0%
CCTCATGCCTTCCTATTACT+GGG - chr7.4:53873942-53873961 MS.gene26038:intron 45.0%
CTAATACCGGAAACTAGGTG+TGG - chr7.4:53873542-53873561 MS.gene26038:intron 45.0%
GAGGTAAGTGCCACAAAACA+TGG - chr7.4:53873833-53873852 MS.gene26038:intron 45.0%
GATACTACGAGTACCCTGAA+GGG - chr7.4:53874607-53874626 MS.gene26038:CDS 45.0%
GCGGGAATACCTAACACAAT+AGG + chr7.4:53873983-53874002 None:intergenic 45.0%
GCTCACTGTTGTCCATAATG+AGG - chr7.4:53873814-53873833 MS.gene26038:intron 45.0%
GGACTACTGCAACAAACAGA+TGG - chr7.4:53873672-53873691 MS.gene26038:intron 45.0%
GGATGTAATTGCCGCGATTT+AGG - chr7.4:53874309-53874328 MS.gene26038:CDS 45.0%
GGTTTCATCCAGCAAAGAGT+GGG - chr7.4:53873388-53873407 MS.gene26038:CDS 45.0%
GTCACTAGTTCCTTGAAACC+TGG + chr7.4:53875059-53875078 None:intergenic 45.0%
GTCCTAGTGTTCATCGCTTT+GGG - chr7.4:53873651-53873670 MS.gene26038:intron 45.0%
TAAGTGATCGGCCAGTTTCT+TGG - chr7.4:53873412-53873431 MS.gene26038:intron 45.0%
TAGGACACACCTTGTCAGTA+TGG + chr7.4:53873577-53873596 None:intergenic 45.0%
TCACTTATCCCACTCTTTGC+TGG + chr7.4:53873399-53873418 None:intergenic 45.0%
TCCTCATGCCTTCCTATTAC+TGG - chr7.4:53873941-53873960 MS.gene26038:intron 45.0%
TCGCTCTAATACCGGAAACT+AGG - chr7.4:53873537-53873556 MS.gene26038:intron 45.0%
TGGTTTCATCCAGCAAAGAG+TGG - chr7.4:53873387-53873406 MS.gene26038:CDS 45.0%
TTCATTATTAGGCTCGGCAG+AGG + chr7.4:53874044-53874063 None:intergenic 45.0%
TTGATACTGGTCGTGGCTTA+TGG - chr7.4:53874574-53874593 MS.gene26038:CDS 45.0%
! ATTTTGTGCGGCTGATATGG+TGG - chr7.4:53875127-53875146 MS.gene26038:CDS 45.0%
! GCATTTGGAACCAGGTTTCA+AGG - chr7.4:53875046-53875065 MS.gene26038:intron 45.0%
! GTTTTCTTTTGCTGCTGAGG+GGG - chr7.4:53874144-53874163 MS.gene26038:intron 45.0%
! TCCGAAACTGGCATTTTGTG+CGG - chr7.4:53875115-53875134 MS.gene26038:intron 45.0%
! TGTGGCACACCATTTGGAAT+AGG + chr7.4:53873707-53873726 None:intergenic 45.0%
! TTCAGGGTACTCGTAGTATC+CGG + chr7.4:53874607-53874626 None:intergenic 45.0%
!!! GAGGCAGGCTTGCTTTATTT+TGG - chr7.4:53874490-53874509 MS.gene26038:CDS 45.0%
AAGTTTGGGTACTCCTCGAG+CGG - chr7.4:53874848-53874867 MS.gene26038:CDS 50.0%
AATGGTGTGCCACAAACAGG+AGG - chr7.4:53873713-53873732 MS.gene26038:intron 50.0%
ACACCTTGTCAGTATGGTCG+AGG + chr7.4:53873571-53873590 None:intergenic 50.0%
ACAGGTCCATGGTGCATTCT+TGG - chr7.4:53874681-53874700 MS.gene26038:CDS 50.0%
ACTAGTGACTGATGCTTGGC+AGG - chr7.4:53875070-53875089 MS.gene26038:intron 50.0%
AGACAAGCGGTTCTTGACTC+AGG - chr7.4:53874780-53874799 MS.gene26038:CDS 50.0%
AGGAGACCACACCTAGTTTC+CGG + chr7.4:53873551-53873570 None:intergenic 50.0%
AGGTTCTCCAAGATAGCCGT+AGG + chr7.4:53874927-53874946 None:intergenic 50.0%
AGTTTCTCTTCAACCGCTCG+AGG + chr7.4:53874864-53874883 None:intergenic 50.0%
CAAACAGGAGGTAACAGCAG+TGG - chr7.4:53873725-53873744 MS.gene26038:intron 50.0%
CATGGATGCGAGCGAGAAAA+AGG - chr7.4:53874719-53874738 MS.gene26038:CDS 50.0%
CCAAATGGTGTGCCACAAAC+AGG - chr7.4:53873710-53873729 MS.gene26038:intron 50.0%
CCGGGTCAAATGACTCTGAT+AGG - chr7.4:53874288-53874307 MS.gene26038:intron 50.0%
CCTAGTTCGGCACTTCAATC+CGG - chr7.4:53874362-53874381 MS.gene26038:CDS 50.0%
CCTGTTTGTGGCACACCATT+TGG + chr7.4:53873713-53873732 None:intergenic 50.0%
CGTCCTAGTGTTCATCGCTT+TGG - chr7.4:53873650-53873669 MS.gene26038:intron 50.0%
CTCTGATGATCAAGCCTACC+GGG - chr7.4:53874270-53874289 MS.gene26038:intron 50.0%
CTGCTGTTACCTCCTGTTTG+TGG + chr7.4:53873725-53873744 None:intergenic 50.0%
GCCGCACAAAATGCCAGTTT+CGG + chr7.4:53875119-53875138 None:intergenic 50.0%
GCTCTGATGATCAAGCCTAC+CGG - chr7.4:53874269-53874288 MS.gene26038:intron 50.0%
GGATACTACGAGTACCCTGA+AGG - chr7.4:53874606-53874625 MS.gene26038:CDS 50.0%
GGGACGTAGACTACTTGCAT+GGG - chr7.4:53874629-53874648 MS.gene26038:CDS 50.0%
GGTTCTTGACTCAGGCTTAG+TGG - chr7.4:53874788-53874807 MS.gene26038:CDS 50.0%
GTCCCAAAGCGATGAACACT+AGG + chr7.4:53873656-53873675 None:intergenic 50.0%
GTTGCGACCCAGTAATAGGA+AGG + chr7.4:53873952-53873971 None:intergenic 50.0%
TACTACGAGTACCCTGAAGG+GGG - chr7.4:53874609-53874628 MS.gene26038:CDS 50.0%
TCAGAGTCATTTGACCCGGT+AGG + chr7.4:53874287-53874306 None:intergenic 50.0%
TCAGTTGATCCCAGTGGTAG+AGG - chr7.4:53874468-53874487 MS.gene26038:CDS 50.0%
TCTCCTCGACCATACTGACA+AGG - chr7.4:53873565-53873584 MS.gene26038:intron 50.0%
TGATCCAAACTGACGTTGCG+CGG + chr7.4:53873331-53873350 None:intergenic 50.0%
TTGCTGCTGAGGGGGTTAAT+GGG - chr7.4:53874152-53874171 MS.gene26038:intron 50.0%
TTTGCTGCTGAGGGGGTTAA+TGG - chr7.4:53874151-53874170 MS.gene26038:intron 50.0%
! CCCAGTAATAGGAAGGCATG+AGG + chr7.4:53873945-53873964 None:intergenic 50.0%
! GGAAGGCATGAGGATGAAGA+AGG + chr7.4:53873935-53873954 None:intergenic 50.0%
! GGCATTTTGTGCGGCTGATA+TGG - chr7.4:53875124-53875143 MS.gene26038:CDS 50.0%
! TTAGTGGATGTCCCGATGGA+GGG - chr7.4:53874804-53874823 MS.gene26038:CDS 50.0%
!! TGATGATGGTGTCCGTGAGT+GGG - chr7.4:53873616-53873635 MS.gene26038:intron 50.0%
AGTAGTCTACGTCCCCCTTC+AGG + chr7.4:53874624-53874643 None:intergenic 55.0%
CGTGGCTTATGGAGACTCAC+CGG - chr7.4:53874585-53874604 MS.gene26038:CDS 55.0%
GATCCAAACTGACGTTGCGC+GGG + chr7.4:53873330-53873349 None:intergenic 55.0%
GATCTGTGGGTGCAAGTCCA+TGG - chr7.4:53873355-53873374 MS.gene26038:CDS 55.0%
GGGGACGTAGACTACTTGCA+TGG - chr7.4:53874628-53874647 MS.gene26038:CDS 55.0%
GTAAACGGGTACCCCTCCAT+CGG + chr7.4:53874819-53874838 None:intergenic 55.0%
GTAACTCCACACCCCACTCA+CGG + chr7.4:53873631-53873650 None:intergenic 55.0%
GTAGTCTACGTCCCCCTTCA+GGG + chr7.4:53874623-53874642 None:intergenic 55.0%
GTTGATCCCAGTGGTAGAGG+AGG - chr7.4:53874471-53874490 MS.gene26038:CDS 55.0%
TAAACGGGTACCCCTCCATC+GGG + chr7.4:53874818-53874837 None:intergenic 55.0%
TGAAGGCGAGGTCGTTGCTA+CGG + chr7.4:53874996-53875015 None:intergenic 55.0%
TGCCGCGATTTAGGTAGTCC+CGG - chr7.4:53874318-53874337 MS.gene26038:CDS 55.0%
TGCTGCTGAGGGGGTTAATG+GGG - chr7.4:53874153-53874172 MS.gene26038:intron 55.0%
TGTTATGCTAAGGGTGGCCG+CGG + chr7.4:53874002-53874021 None:intergenic 55.0%
! AGGCTTAGTGGATGTCCCGA+TGG - chr7.4:53874800-53874819 MS.gene26038:CDS 55.0%
! CTTAGTGGATGTCCCGATGG+AGG - chr7.4:53874803-53874822 MS.gene26038:CDS 55.0%
! GATGATGGTGTCCGTGAGTG+GGG - chr7.4:53873617-53873636 MS.gene26038:intron 55.0%
! TAGTGGATGTCCCGATGGAG+GGG - chr7.4:53874805-53874824 MS.gene26038:CDS 55.0%
!! CCGGATTGAAGTGCCGAACT+AGG + chr7.4:53874365-53874384 None:intergenic 55.0%
!! CTGATGATGGTGTCCGTGAG+TGG - chr7.4:53873615-53873634 MS.gene26038:intron 55.0%
AAGCCTGCCTCCTCTACCAC+TGG + chr7.4:53874481-53874500 None:intergenic 60.0%
AGCCTGCCTCCTCTACCACT+GGG + chr7.4:53874480-53874499 None:intergenic 60.0%
ATCCCAGTGGTAGAGGAGGC+AGG - chr7.4:53874475-53874494 MS.gene26038:CDS 60.0%
CGCCGGGACTACCTAAATCG+CGG + chr7.4:53874323-53874342 None:intergenic 60.0%
GCGGCCACCCTTAGCATAAC+AGG - chr7.4:53874001-53874020 MS.gene26038:intron 60.0%
GTGCGGCTGATATGGTGGCT+TGG - chr7.4:53875132-53875151 MS.gene26038:CDS 60.0%
GTTATGCTAAGGGTGGCCGC+GGG + chr7.4:53874001-53874020 None:intergenic 60.0%
TGTCCCGCGCAACGTCAGTT+TGG - chr7.4:53873324-53873343 MS.gene26038:CDS 60.0%
!! GATCAGATGACGGGGCTGCA+AGG + chr7.4:53874947-53874966 None:intergenic 60.0%
!! TGGAGGGGTACCCGTTTACG+TGG - chr7.4:53874820-53874839 MS.gene26038:CDS 60.0%
TGGTGTCCGTGAGTGGGGTG+TGG - chr7.4:53873622-53873641 MS.gene26038:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 53873241 53875238 53873241 ID=MS.gene26038
chr7.4 mRNA 53873241 53875238 53873241 ID=MS.gene26038.t1;Parent=MS.gene26038
chr7.4 exon 53875120 53875238 53875120 ID=MS.gene26038.t1.exon1;Parent=MS.gene26038.t1
chr7.4 CDS 53875120 53875238 53875120 ID=cds.MS.gene26038.t1;Parent=MS.gene26038.t1
chr7.4 exon 53874292 53874950 53874292 ID=MS.gene26038.t1.exon2;Parent=MS.gene26038.t1
chr7.4 CDS 53874292 53874950 53874292 ID=cds.MS.gene26038.t1;Parent=MS.gene26038.t1
chr7.4 exon 53873241 53873419 53873241 ID=MS.gene26038.t1.exon3;Parent=MS.gene26038.t1
chr7.4 CDS 53873241 53873419 53873241 ID=cds.MS.gene26038.t1;Parent=MS.gene26038.t1
Gene Sequence

>MS.gene26038

ATGGATGTTGCTAAGACTCTTGATGATGGTCTATGGCTTTATGATAATTTTCATATTGTCATTGAACGAATTGCTCTAGGTGTTGTCCCGCGCAACGTCAGTTTGGATCATCTTGATCTGTGGGTGCAAGTCCATGGATTACCTTTTGGTTTCATCCAGCAAAGAGTGGGATAAGTGATCGGCCAGTTTCTTGGAGAAATTAAAGTGTATGATAGTCGCAATTTTATTCATAGCTCATACATGCGTCTGAAGTTAACGATTAATGTGAATCAACCCTTGAAAAATCAGTGGCAAATTCGCTCTAATACCGGAAACTAGGTGTGGTCTCCTCGACCATACTGACAAGGTGTGTCCTAACCTGTTTGAGTTAGATTCTGATGATGGTGTCCGTGAGTGGGGTGTGGAGTTACGTCCTAGTGTTCATCGCTTTGGGACTACTGCAACAAACAGATGGATTCAAGATCCTATTCCAAATGGTGTGCCACAAACAGGAGGTAACAGCAGTGGAACACAATTTGCTGCCACAAACATTTCTACTGAAAGCACTTCTGACATGTCTAATTTAGGTGGTCGGCTCACTGTTGTCCATAATGAGGTAAGTGCCACAAAACATGGAATTTTGGTGGCTCAAAAATCTGTTTTGTCCAAGAATGGTAAAGCGACTTCTGCTGTCCACATTAATCATGCTTTTCCTTCTTCATCCTCATGCCTTCCTATTACTGGGTCGCAACTTCTCAAGCCTATTGTGTTAGGTATTCCCGCGGCCACCCTTAGCATAACAGGTGTTGAAGACAATACAGCCTCTGCCGAGCCTAATAATGAAGAAGTTGGTTCCGATTTGAAGAAAAGGAAGCTTATGTTGGCTGAATGTCTCGAGATCAGTACTCCTCATAATGATACAGAGTTTTCTTTTGCTGCTGAGGGGGTTAATGGGGATTATTTTGTAGGTGAAAATGTTAGTGGGGGAGATGATCATGTAATGAATATTTGTGATAATCCTTTGTATGAAAATCAAAATGTATCGACGGGCTCTGATGATCAAGCCTACCGGGTCAAATGACTCTGATAGGATGTAATTGCCGCGATTTAGGTAGTCCCGGCGCAATTCCATACTTAAAATACCTAGTTCGGCACTTCAATCCGGACTTATTATTCATAAGTGAGACTCTATCTCATCGTAATAAAATTGAATATTTACGTTATTTGCTTGGTTTCGATTTTTGTTTTTCAGTTGATCCCAGTGGTAGAGGAGGCAGGCTTGCTTTATTTTGGCGTGCCCCGTTTAATTGTAATATTGTAAACTATTCAAACAACCACATTTTTGTTGATGTTATTGATACTGGTCGTGGCTTATGGAGACTCACCGGATACTACGAGTACCCTGAAGGGGGACGTAGACTACTTGCATGGGATTTCCTCCGTTAAATCTCTAATCAATTTACAGGTCCATGGTGCATTCTTGGTGATTTTAATGATATCATGGATGCGAGCGAGAAAAAGGGTCAGAATCTTTGTTCGAATTGGTTAATCAATGGCTTTAGACAAGCGGTTCTTGACTCAGGCTTAGTGGATGTCCCGATGGAGGGGTACCCGTTTACGTGGTTCAAAAGTTTGGGTACTCCTCGAGCGGTTGAAGAGAAACTTGATAGGGCTCTTGCAAATAATGAATGGTTTACTCTTTTTCCTACGGCTATCTTGGAGAACCTTGCAGCCCCGTCATCTGATCATTACCCTATTCTCTTGAATAGATGTCCGTAGCAACGACCTCGCCTTCACAAACGTAGTTTTCGTTATGAAAATGAGTAGCATTTGGAACCAGGTTTCAAGGAACTAGTGACTGATGCTTGGCAGGTTCATAATGCTAATTTGGTAATTCCGAAACTGGCATTTTGTGCGGCTGATATGGTGGCTTGGAGTAGAGAGCATTGTAACAAGCTTAAGATGAATATTGAAGATTGTCGGCTTCAAATTCAGAACATCCGTTCGAATAGCACATGA
Protein sequence

>MS.gene26038.t1

MDVAKTLDDGLWLYDNFHIVIERIALGVVPRNVSLDHLDLGKFALIPETRCGLLDHTDKVCPNLFELDSDDGVREWGVELRPSVHRFGTTATNRWIQDPIPNGVPQTGGNSSGTQFAATNISTESTSDMSNLGGRLTVVHNEVSATKHGILVAQKSVLSKNGKATSAVHINHAFPSSSSCLPITGSQLLKPIVLGIPAATLSITGVEDNTASAEPNNEEVGSDLKKRKLMLAECLEISTPHNDTEFSFAAEGVNGDYFVGFKELVTDAWQVHNANLVIPKLAFCAADMVAWSREHCNKLKMNIEDCRLQIQNIRSNST