AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009121

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009121.t1 MTR_0010s0370 76.147 109 26 0 1 109 1 109 1.22e-54 179
MS.gene009121.t1 MTR_0010s0350 76.147 109 26 0 1 109 1 109 1.22e-54 179
MS.gene009121.t1 MTR_1g036720 73.832 107 28 0 1 107 1 107 1.24e-54 176
MS.gene009121.t1 MTR_1g051330 63.492 126 46 0 254 379 294 419 5.74e-54 191
MS.gene009121.t1 MTR_6g046587 73.684 95 25 0 254 348 189 283 1.95e-38 140
MS.gene009121.t1 MTR_1g100687 44.805 154 79 4 254 401 75 228 1.63e-30 117
MS.gene009121.t1 MTR_8g463110 44.444 126 69 1 254 378 139 264 4.65e-30 122
MS.gene009121.t1 MTR_0042s0130 43.750 128 67 2 254 378 178 303 2.60e-25 105
MS.gene009121.t1 MTR_3g044860 45.600 125 57 4 254 376 31 146 1.06e-23 100
MS.gene009121.t1 MTR_6g009010 40.441 136 80 1 234 368 126 261 1.35e-23 99.4
MS.gene009121.t1 MTR_4g020630 46.457 127 59 2 254 379 83 201 2.21e-23 102
MS.gene009121.t1 MTR_8g470880 40.650 123 63 3 222 342 409 523 4.17e-18 86.7
MS.gene009121.t1 MTR_6g034215 33.125 160 77 4 223 379 137 269 3.59e-17 82.4
MS.gene009121.t1 MTR_0114s0080 41.053 95 49 1 222 316 37 124 2.73e-16 75.5
MS.gene009121.t1 MTR_0112s0060 62.963 54 20 0 269 322 55 108 9.03e-16 73.9
MS.gene009121.t1 MTR_2g018005 53.623 69 32 0 254 322 161 229 7.69e-15 73.9
MS.gene009121.t1 MTR_2g055450 35.714 126 65 2 254 378 195 305 9.04e-15 75.9
MS.gene009121.t1 MTR_4g122570 33.962 106 70 0 251 356 327 432 5.92e-14 73.9
MS.gene009121.t1 MTR_1g036710 43.137 102 52 2 114 215 65 160 8.45e-14 72.0
MS.gene009121.t1 MTR_6g034715 39.241 79 43 1 250 323 58 136 1.35e-13 68.9
MS.gene009121.t1 MTR_0123s0050 50.000 48 24 0 270 317 3 50 1.16e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 103 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGCCTTCCCTCAGCTTT+TGG 0.211336 8.1:+39405667 None:intergenic
GTTTGGAACCTTGGGGTTAT+TGG 0.230270 8.1:+39405587 None:intergenic
CAGATGATGGAGTCCGAAAT+TGG 0.239263 8.1:-39405737 MS.gene009121:CDS
CCCATGTTGTGAAAGAAAAT+TGG 0.239614 8.1:-39404454 MS.gene009121:CDS
TTGGCACTAGGAAGAGAATT+TGG 0.267457 8.1:+39405339 None:intergenic
ACTTGGGCTGATGTCACTTT+TGG 0.279062 8.1:+39405320 None:intergenic
GAGCCTTATGCACTAATTCT+TGG 0.288979 8.1:-39404628 MS.gene009121:CDS
GTACTTTGACAACCATCTTC+TGG 0.303654 8.1:-39406129 MS.gene009121:CDS
TTTAATTCGGCCTTCAAATC+AGG 0.322453 8.1:-39405529 MS.gene009121:CDS
CTCTATGATCTCCCTCTTGT+TGG 0.335711 8.1:-39404713 MS.gene009121:CDS
GTCAAGTCGAGCTTCTTTAG+AGG 0.340967 8.1:+39404652 None:intergenic
TTTGCAAGGGCATCAGAGTT+TGG 0.350894 8.1:+39405570 None:intergenic
GCATCAGAGTTTGGAACCTT+GGG 0.356038 8.1:+39405579 None:intergenic
TATCAAGGTGATGGGAGAAT+TGG 0.364971 8.1:+39406180 None:intergenic
TACGGAATCCTCATTTAATT+CGG 0.369700 8.1:-39405542 MS.gene009121:CDS
TTAAAACTCTTTGCATATCA+AGG 0.384505 8.1:+39406165 None:intergenic
AGTGGTGGAGGAGCAGTTAC+AGG 0.384615 8.1:-39405642 MS.gene009121:CDS
CGTAATTCTTCCAATGATTC+GGG 0.385022 8.1:-39404299 MS.gene009121:CDS
GCGTAATTCTTCCAATGATT+CGG 0.387177 8.1:-39404300 MS.gene009121:CDS
CGACCTACTAGGAGAAGGTT+TGG 0.395253 8.1:+39406317 None:intergenic
GCTGCATTTACCTGATTTGA+AGG 0.401171 8.1:+39405519 None:intergenic
ACTGTCATTATTACAAATAA+AGG 0.402948 8.1:-39405441 MS.gene009121:CDS
AGATGATGGAGTCCGAAATT+GGG 0.403480 8.1:-39405736 MS.gene009121:CDS
CTTGATGTTGTTCCTGCAAA+TGG 0.412273 8.1:-39406104 MS.gene009121:intron
GGCATCAGAGTTTGGAACCT+TGG 0.427877 8.1:+39405578 None:intergenic
GGACATTCTTGAGATTGAAC+CGG 0.429695 8.1:-39406216 MS.gene009121:CDS
TGATTCGGGCTACCATTTGC+AGG 0.431868 8.1:+39406092 None:intergenic
AATTATTAAAACGGAAGCTT+CGG 0.440354 8.1:+39404501 None:intergenic
TGAGGAGTGCGCCATGGAAC+CGG 0.443096 8.1:+39404524 None:intergenic
GTGAAAGACATAGCTGAAAC+TGG 0.444437 8.1:-39405387 MS.gene009121:CDS
TTGCCAAGAATTAGTGCATA+AGG 0.460815 8.1:+39404625 None:intergenic
ACATAGGCGCAACAAGTGAT+TGG 0.461353 8.1:+39404579 None:intergenic
TTGTGGGCCTCCCGAATCAT+TGG 0.463703 8.1:+39404289 None:intergenic
TTGGCCACAATGTTATTTGA+AGG 0.467120 8.1:+39404422 None:intergenic
TATACTTCTTCAGCTCGAAC+CGG 0.478782 8.1:-39404543 MS.gene009121:CDS
TTCACTTGGTTCAAAAGTAT+CGG 0.485662 8.1:-39404683 MS.gene009121:CDS
ATGCCCTTGCAAATCTGTTA+CGG 0.491682 8.1:-39405560 MS.gene009121:CDS
TTTGCAGCGCTAGAAGTTGT+GGG 0.493129 8.1:+39404273 None:intergenic
CTCTTTGCATATCAAGGTGA+TGG 0.493809 8.1:+39406171 None:intergenic
CTCAATGCAGTAGCTAAGCT+TGG 0.498554 8.1:+39404403 None:intergenic
TTCAGCTCGAACCGGTTCCA+TGG 0.499556 8.1:-39404535 MS.gene009121:CDS
GAAGGCAGAAACAGTGGTGG+AGG 0.502933 8.1:-39405654 MS.gene009121:CDS
CCTCCACATGGTCATCATCA+TGG 0.508527 8.1:+39405475 None:intergenic
TCAGCCAAGAATTATTAAAA+CGG 0.519230 8.1:+39404492 None:intergenic
CGCTCAGAGAGAGCTGGTGA+AGG 0.523171 8.1:+39406396 None:intergenic
TATCCGTTCGTATATGATGA+TGG 0.532571 8.1:-39406276 MS.gene009121:CDS
GACATTCTTGAGATTGAACC+GGG 0.534612 8.1:-39406215 MS.gene009121:CDS
GTGAATTGATAGCCAACAAG+AGG 0.537595 8.1:+39404701 None:intergenic
GACCTACTAGGAGAAGGTTT+GGG 0.539170 8.1:+39406318 None:intergenic
TTTGAAGGCCGAATTAAATG+AGG 0.540437 8.1:+39405534 None:intergenic
GGTTCGAGCTGAAGAAGTAT+AGG 0.546259 8.1:+39404545 None:intergenic
CAACAAGAGGGAGATCATAG+AGG 0.548622 8.1:+39404714 None:intergenic
GATGATGGAGTCCGAAATTG+GGG 0.549911 8.1:-39405735 MS.gene009121:CDS
TTGTTGGCTATCAATTCACT+TGG 0.558204 8.1:-39404697 MS.gene009121:CDS
AGAATGTCCACTCCACGGAC+AGG 0.562681 8.1:+39406230 None:intergenic
GACCCAAACCTTCTCCTAGT+AGG 0.563764 8.1:-39406320 MS.gene009121:CDS
CCTCATCGCTCAGAGAGAGC+TGG 0.564637 8.1:+39406390 None:intergenic
GCATTGAGGATATGAAATCA+TGG 0.569487 8.1:-39404388 MS.gene009121:CDS
TGCTTCTCTACACGCAACTC+AGG 0.570715 8.1:+39405711 None:intergenic
CAACATCAAGAACCAGAAGA+TGG 0.581181 8.1:+39406117 None:intergenic
TTTCCATCATCATATACGAA+CGG 0.584110 8.1:+39406273 None:intergenic
TTGGAATCCTGTCCGTGGAG+TGG 0.584307 8.1:-39406237 MS.gene009121:CDS
GATTCCGTAACAGATTTGCA+AGG 0.588865 8.1:+39405556 None:intergenic
CAAGCTTAGCTACTGCATTG+AGG 0.590940 8.1:-39404402 MS.gene009121:CDS
CGCAGAGGCAACTTCAGACA+CGG 0.592796 8.1:-39405364 MS.gene009121:CDS
ATAGGTGTGTGGTCTGACAT+AGG 0.592811 8.1:+39404563 None:intergenic
TCTTTGCATATCAAGGTGAT+GGG 0.593232 8.1:+39406172 None:intergenic
TTTCTTTCACAACATGGGCG+AGG 0.596132 8.1:+39404459 None:intergenic
TAATGACTCATTATTACTCG+AGG 0.598818 8.1:+39405614 None:intergenic
GCTCAGAGAGAGCTGGTGAA+GGG 0.599446 8.1:+39406397 None:intergenic
CAGCGGAACAATAGCAGTGG+TGG 0.603940 8.1:-39405690 MS.gene009121:CDS
GAGCTGGTGAAGGGAAGCCA+TGG 0.605745 8.1:+39406406 None:intergenic
CTTCGGTGAGGAGTGCGCCA+TGG 0.606571 8.1:+39404518 None:intergenic
AACAAGAGGGAGATCATAGA+GGG 0.618393 8.1:+39404715 None:intergenic
GCAGTGGTGGCCAAAAGCTG+AGG 0.619032 8.1:-39405677 MS.gene009121:CDS
AATGACTCATTATTACTCGA+GGG 0.623070 8.1:+39405615 None:intergenic
ATTCCGTAACAGATTTGCAA+GGG 0.628120 8.1:+39405557 None:intergenic
GGTGGCCAAAAGCTGAGGGA+AGG 0.630585 8.1:-39405672 MS.gene009121:CDS
CATCAGAGTTTGGAACCTTG+GGG 0.634667 8.1:+39405580 None:intergenic
GTTCACGAAGCTGTTGTATG+CGG 0.637317 8.1:+39404336 None:intergenic
TTATCCTTCAAATAACATTG+TGG 0.637698 8.1:-39404426 MS.gene009121:CDS
GATGGTTGTCAAAGTACCAA+GGG 0.637896 8.1:+39406135 None:intergenic
ATTAATTGCCAATAACCCCA+AGG 0.639407 8.1:-39405595 MS.gene009121:CDS
CATAGCTGAAACTGGCGCAG+AGG 0.642125 8.1:-39405379 MS.gene009121:CDS
TTCAAATCAGGTAAATGCAG+CGG 0.642788 8.1:-39405517 MS.gene009121:CDS
CAGTGGTGGCCAAAAGCTGA+GGG 0.643498 8.1:-39405676 MS.gene009121:CDS
TCTCAAGAATGTCCACTCCA+CGG 0.644358 8.1:+39406225 None:intergenic
CCAGCTCTCTCTGAGCGATG+AGG 0.648986 8.1:-39406390 MS.gene009121:CDS
CTGAGGGAAGGCAGAAACAG+TGG 0.651119 8.1:-39405660 MS.gene009121:CDS
AATTCTTCCAATGATTCGGG+AGG 0.653538 8.1:-39404296 MS.gene009121:CDS
AAGCAGCGGAACAATAGCAG+TGG 0.654058 8.1:-39405693 MS.gene009121:CDS
TGAATTGATAGCCAACAAGA+GGG 0.662804 8.1:+39404702 None:intergenic
AGATGGTTGTCAAAGTACCA+AGG 0.664266 8.1:+39406134 None:intergenic
AGGGAAGGCAGAAACAGTGG+TGG 0.665145 8.1:-39405657 MS.gene009121:CDS
ATCATCATATACGAACGGAT+AGG 0.667070 8.1:+39406278 None:intergenic
GCTGAAGAAGTATAGGTGTG+TGG 0.674293 8.1:+39404552 None:intergenic
AGTGATTGGAGAATTGCTTG+CGG 0.675616 8.1:+39404593 None:intergenic
AGTTGCGTGTAGAGAAGCAG+CGG 0.676191 8.1:-39405707 MS.gene009121:CDS
AATTGGAAAGTATAGAGACC+CGG 0.676819 8.1:+39406197 None:intergenic
TTAAAACGGAAGCTTCGGTG+AGG 0.696554 8.1:+39404506 None:intergenic
CCATGATGATGACCATGTGG+AGG 0.707471 8.1:-39405475 MS.gene009121:CDS
AATCCATGATGATGACCATG+TGG 0.780763 8.1:-39405478 MS.gene009121:CDS
ATGATGGAGTCCGAAATTGG+GGG 0.810207 8.1:-39405734 MS.gene009121:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATTATCATTGCATA+AGG + chr8.1:39405578-39405597 None:intergenic 15.0%
!! AAATAAAGGAAAAAGATCAA+GGG - chr8.1:39405259-39405278 MS.gene009121:intron 20.0%
!! ACTGTCATTATTACAAATAA+AGG - chr8.1:39405245-39405264 MS.gene009121:intron 20.0%
!! ATAAGGTTTCAATAAGAATA+AGG + chr8.1:39405561-39405580 None:intergenic 20.0%
!! TTACTGTGAGAAATTATATT+CGG - chr8.1:39404920-39404939 MS.gene009121:intron 20.0%
!!! TATTTTTCTGTTGATTGTAT+TGG - chr8.1:39405631-39405650 MS.gene009121:CDS 20.0%
! AAGAAAATAAAGAAAACTGG+AGG - chr8.1:39404816-39404835 MS.gene009121:intron 25.0%
! AATTATTAAAACGGAAGCTT+CGG + chr8.1:39406188-39406207 None:intergenic 25.0%
! CAAATAAAGGAAAAAGATCA+AGG - chr8.1:39405258-39405277 MS.gene009121:intron 25.0%
! CAGAAGAAAATAAAGAAAAC+TGG - chr8.1:39404813-39404832 MS.gene009121:intron 25.0%
! GTAATTTATCAAATGAACCT+TGG - chr8.1:39405839-39405858 MS.gene009121:intron 25.0%
! TCAATAAGAATAAGGATATC+CGG + chr8.1:39405553-39405572 None:intergenic 25.0%
! TCAGCCAAGAATTATTAAAA+CGG + chr8.1:39406197-39406216 None:intergenic 25.0%
! TTAAAACTCTTTGCATATCA+AGG + chr8.1:39404524-39404543 None:intergenic 25.0%
! TTATCCTTCAAATAACATTG+TGG - chr8.1:39406260-39406279 MS.gene009121:CDS 25.0%
!! CACGAATTTTCATGTAATTA+CGG + chr8.1:39404761-39404780 None:intergenic 25.0%
!! TGGAAAAAATTGACACATTT+TGG - chr8.1:39404430-39404449 MS.gene009121:CDS 25.0%
!!! ATGCAAAGAGTTTTAAGAAA+AGG - chr8.1:39404528-39404547 MS.gene009121:CDS 25.0%
!!! CAGTTTTCTTTATTTTCTTC+TGG + chr8.1:39404815-39404834 None:intergenic 25.0%
!!! TCAGACAAGTCATTTTTTAT+CGG - chr8.1:39405412-39405431 MS.gene009121:CDS 25.0%
AAAGACATAGGCAATTACAT+TGG - chr8.1:39404693-39404712 MS.gene009121:CDS 30.0%
AAATTCAAGTATGAACGTCT+GGG - chr8.1:39404855-39404874 MS.gene009121:intron 30.0%
AAGACATAGGCAATTACATT+GGG - chr8.1:39404694-39404713 MS.gene009121:CDS 30.0%
AATGACTCATTATTACTCGA+GGG + chr8.1:39405074-39405093 None:intergenic 30.0%
TAAATTCAAGTATGAACGTC+TGG - chr8.1:39404854-39404873 MS.gene009121:intron 30.0%
TAATGACTCATTATTACTCG+AGG + chr8.1:39405075-39405094 None:intergenic 30.0%
TACGGAATCCTCATTTAATT+CGG - chr8.1:39405144-39405163 MS.gene009121:intron 30.0%
TCTCACAGTAATCTTCAATA+TGG + chr8.1:39404911-39404930 None:intergenic 30.0%
TTTCCATCATCATATACGAA+CGG + chr8.1:39404416-39404435 None:intergenic 30.0%
! CCAATTTTCTTTCACAACAT+GGG + chr8.1:39406235-39406254 None:intergenic 30.0%
! GAATTTTCATGTAATTACGG+AGG + chr8.1:39404758-39404777 None:intergenic 30.0%
! GGAAATTTTTGTTACTACTG+CGG - chr8.1:39404876-39404895 MS.gene009121:intron 30.0%
! TATTATTTTCTTCCTCCACA+TGG + chr8.1:39405226-39405245 None:intergenic 30.0%
! TCCAATTTTCTTTCACAACA+TGG + chr8.1:39406236-39406255 None:intergenic 30.0%
! TTCACTTGGTTCAAAAGTAT+CGG - chr8.1:39406003-39406022 MS.gene009121:intron 30.0%
!! GCTTCCGTTTTAATAATTCT+TGG - chr8.1:39406190-39406209 MS.gene009121:CDS 30.0%
!!! GGACAAGTTGATAAAGTTTT+GGG + chr8.1:39405719-39405738 None:intergenic 30.0%
!!! TGGACAAGTTGATAAAGTTT+TGG + chr8.1:39405720-39405739 None:intergenic 30.0%
AAGACTCACTTAAGGGTAAT+TGG - chr8.1:39405743-39405762 MS.gene009121:intron 35.0%
AATTACCCTTAAGTGAGTCT+TGG + chr8.1:39405744-39405763 None:intergenic 35.0%
AGACATAGGCAATTACATTG+GGG - chr8.1:39404695-39404714 MS.gene009121:CDS 35.0%
ATCATCATATACGAACGGAT+AGG + chr8.1:39404411-39404430 None:intergenic 35.0%
ATTAATTGCCAATAACCCCA+AGG - chr8.1:39405091-39405110 MS.gene009121:intron 35.0%
ATTCCGTAACAGATTTGCAA+GGG + chr8.1:39405132-39405151 None:intergenic 35.0%
CCCATGTTGTGAAAGAAAAT+TGG - chr8.1:39406232-39406251 MS.gene009121:CDS 35.0%
CGTAATTCTTCCAATGATTC+GGG - chr8.1:39406387-39406406 MS.gene009121:CDS 35.0%
GCATTGAGGATATGAAATCA+TGG - chr8.1:39406298-39406317 MS.gene009121:CDS 35.0%
GCGTAATTCTTCCAATGATT+CGG - chr8.1:39406386-39406405 MS.gene009121:CDS 35.0%
GTTCCAAGCTATGATATTCA+TGG + chr8.1:39405467-39405486 None:intergenic 35.0%
TATCCGTTCGTATATGATGA+TGG - chr8.1:39404410-39404429 MS.gene009121:CDS 35.0%
TATTCGGTAAATGCAGATGA+TGG - chr8.1:39404936-39404955 MS.gene009121:intron 35.0%
TCTTTGCATATCAAGGTGAT+GGG + chr8.1:39404517-39404536 None:intergenic 35.0%
TTATCTCCGTTTGATAAGAG+AGG - chr8.1:39405889-39405908 MS.gene009121:intron 35.0%
TTCAAATCAGGTAAATGCAG+CGG - chr8.1:39405169-39405188 MS.gene009121:intron 35.0%
TTGCCAAGAATTAGTGCATA+AGG + chr8.1:39406064-39406083 None:intergenic 35.0%
TTGTCAAAAAACGACCTACT+AGG + chr8.1:39404383-39404402 None:intergenic 35.0%
TTTAATTCGGCCTTCAAATC+AGG - chr8.1:39405157-39405176 MS.gene009121:intron 35.0%
TTTGAAGGCCGAATTAAATG+AGG + chr8.1:39405155-39405174 None:intergenic 35.0%
! AATGAACCTTGGTGCATTAT+AGG - chr8.1:39405850-39405869 MS.gene009121:intron 35.0%
! AATTGGAAAGTATAGAGACC+CGG + chr8.1:39404492-39404511 None:intergenic 35.0%
! GTTGATTGTATTGGTAGAAG+CGG - chr8.1:39405640-39405659 MS.gene009121:CDS 35.0%
! TATGTCTTTTCCCACTTTCT+CGG + chr8.1:39404682-39404701 None:intergenic 35.0%
! TCTAGTTTGCGTTACTCTAT+TGG - chr8.1:39405598-39405617 MS.gene009121:CDS 35.0%
! TGAATTGATAGCCAACAAGA+GGG + chr8.1:39405987-39406006 None:intergenic 35.0%
! TTGGCCACAATGTTATTTGA+AGG + chr8.1:39406267-39406286 None:intergenic 35.0%
! TTGTTGGCTATCAATTCACT+TGG - chr8.1:39405989-39406008 MS.gene009121:intron 35.0%
!! GATTTTGAAGAGATGAGATC+TGG + chr8.1:39404342-39404361 None:intergenic 35.0%
!!! ACAAGTCATTTTTTATCGGC+AGG - chr8.1:39405416-39405435 MS.gene009121:CDS 35.0%
AAAAACGACCTACTAGGAGA+AGG + chr8.1:39404377-39404396 None:intergenic 40.0%
AAATCGCCTATAATGCACCA+AGG + chr8.1:39405859-39405878 None:intergenic 40.0%
AACAAGAGGGAGATCATAGA+GGG + chr8.1:39405974-39405993 None:intergenic 40.0%
ACTTGTCTGAGTTATGTCCA+TGG + chr8.1:39405402-39405421 None:intergenic 40.0%
AGATACATGACCTTCCAACA+GGG - chr8.1:39404649-39404668 MS.gene009121:CDS 40.0%
AGTGATTGGAGAATTGCTTG+CGG + chr8.1:39406096-39406115 None:intergenic 40.0%
ATGCCCTTGCAAATCTGTTA+CGG - chr8.1:39405126-39405145 MS.gene009121:intron 40.0%
CAACATCAAGAACCAGAAGA+TGG + chr8.1:39404572-39404591 None:intergenic 40.0%
CATGTAATTACGGAGGAAGT+TGG + chr8.1:39404751-39404770 None:intergenic 40.0%
CCAGAACGGTACAAATTGAA+GGG + chr8.1:39404625-39404644 None:intergenic 40.0%
CCATGGGAGAATGATTACTT+GGG + chr8.1:39405385-39405404 None:intergenic 40.0%
CCTTCAATTTGTACCGTTCT+GGG - chr8.1:39404623-39404642 MS.gene009121:CDS 40.0%
CTCTTTGCATATCAAGGTGA+TGG + chr8.1:39404518-39404537 None:intergenic 40.0%
CTTGATGTTGTTCCTGCAAA+TGG - chr8.1:39404582-39404601 MS.gene009121:CDS 40.0%
CTTGTCTGAGTTATGTCCAT+GGG + chr8.1:39405401-39405420 None:intergenic 40.0%
GAACTGCCTTAACATTTCCA+AGG + chr8.1:39405498-39405517 None:intergenic 40.0%
GACATTCTTGAGATTGAACC+GGG - chr8.1:39404471-39404490 MS.gene009121:CDS 40.0%
GAGAAAGTGGGAAAAGACAT+AGG - chr8.1:39404681-39404700 MS.gene009121:CDS 40.0%
GAGCCATGAATATCATAGCT+TGG - chr8.1:39405461-39405480 MS.gene009121:CDS 40.0%
GATTCCGTAACAGATTTGCA+AGG + chr8.1:39405133-39405152 None:intergenic 40.0%
GGACATTCTTGAGATTGAAC+CGG - chr8.1:39404470-39404489 MS.gene009121:CDS 40.0%
GTACTTTGACAACCATCTTC+TGG - chr8.1:39404557-39404576 MS.gene009121:CDS 40.0%
GTGAAAGACATAGCTGAAAC+TGG - chr8.1:39405299-39405318 MS.gene009121:intron 40.0%
TATACTTCTTCAGCTCGAAC+CGG - chr8.1:39406143-39406162 MS.gene009121:CDS 40.0%
TCATGTATCTGAACCCAGAA+CGG + chr8.1:39404639-39404658 None:intergenic 40.0%
TCCATCCAAGACTCACTTAA+GGG - chr8.1:39405736-39405755 MS.gene009121:CDS 40.0%
TCCATGGGAGAATGATTACT+TGG + chr8.1:39405386-39405405 None:intergenic 40.0%
TTGGCACTAGGAAGAGAATT+TGG + chr8.1:39405350-39405369 None:intergenic 40.0%
! AATCCATGATGATGACCATG+TGG - chr8.1:39405208-39405227 MS.gene009121:intron 40.0%
! AATTCTTCCAATGATTCGGG+AGG - chr8.1:39406390-39406409 MS.gene009121:CDS 40.0%
! AGATGGTTGTCAAAGTACCA+AGG + chr8.1:39404555-39404574 None:intergenic 40.0%
! GAGCCTTATGCACTAATTCT+TGG - chr8.1:39406058-39406077 MS.gene009121:intron 40.0%
! GATGGTTGTCAAAGTACCAA+GGG + chr8.1:39404554-39404573 None:intergenic 40.0%
! GCTGCATTTACCTGATTTGA+AGG + chr8.1:39405170-39405189 None:intergenic 40.0%
! GTGAATTGATAGCCAACAAG+AGG + chr8.1:39405988-39406007 None:intergenic 40.0%
!! AGATGATGGAGTCCGAAATT+GGG - chr8.1:39404950-39404969 MS.gene009121:intron 40.0%
!! GAGGAAGTTGGAGTTGTTTT+TGG + chr8.1:39404739-39404758 None:intergenic 40.0%
!! TATCAAGGTGATGGGAGAAT+TGG + chr8.1:39404509-39404528 None:intergenic 40.0%
!!! GAGTTTTAAGAAAAGGCCCT+TGG - chr8.1:39404535-39404554 MS.gene009121:CDS 40.0%
!!! TGTTTTTGGCATCGTACTCA+AGG + chr8.1:39404725-39404744 None:intergenic 40.0%
AATTGAAGGGCCACCTGATT+CGG + chr8.1:39404612-39404631 None:intergenic 45.0%
ACAACAGACGTCGAGATTCA+TGG - chr8.1:39405797-39405816 MS.gene009121:intron 45.0%
ACATAGGCGCAACAAGTGAT+TGG + chr8.1:39406110-39406129 None:intergenic 45.0%
ACCCTTAAGTGAGTCTTGGA+TGG + chr8.1:39405740-39405759 None:intergenic 45.0%
AGGGTTTATGTCCGAGAAAG+TGG - chr8.1:39404668-39404687 MS.gene009121:CDS 45.0%
ATAGGTGTGTGGTCTGACAT+AGG + chr8.1:39406126-39406145 None:intergenic 45.0%
CAACAAGAGGGAGATCATAG+AGG + chr8.1:39405975-39405994 None:intergenic 45.0%
CAACAGACGTCGAGATTCAT+GGG - chr8.1:39405798-39405817 MS.gene009121:intron 45.0%
CAAGCTTAGCTACTGCATTG+AGG - chr8.1:39406284-39406303 MS.gene009121:CDS 45.0%
CAGATACATGACCTTCCAAC+AGG - chr8.1:39404648-39404667 MS.gene009121:CDS 45.0%
CCCAAGTAATCATTCTCCCA+TGG - chr8.1:39405382-39405401 MS.gene009121:CDS 45.0%
CCCAGAACGGTACAAATTGA+AGG + chr8.1:39404626-39404645 None:intergenic 45.0%
CCCTTCAATTTGTACCGTTC+TGG - chr8.1:39404622-39404641 MS.gene009121:CDS 45.0%
CCTTAACATTTCCAAGGCCT+CGG + chr8.1:39405492-39405511 None:intergenic 45.0%
CGGATGAGGTCTTTGATACA+GGG + chr8.1:39405520-39405539 None:intergenic 45.0%
CTCAATGCAGTAGCTAAGCT+TGG + chr8.1:39406286-39406305 None:intergenic 45.0%
CTCTATGATCTCCCTCTTGT+TGG - chr8.1:39405973-39405992 MS.gene009121:intron 45.0%
GACCTACTAGGAGAAGGTTT+GGG + chr8.1:39404371-39404390 None:intergenic 45.0%
GCTATGATATTCATGGCTCC+CGG + chr8.1:39405460-39405479 None:intergenic 45.0%
GGATATCCGGTTTATAGACG+CGG + chr8.1:39405540-39405559 None:intergenic 45.0%
GGGTTTATGTCCGAGAAAGT+GGG - chr8.1:39404669-39404688 MS.gene009121:CDS 45.0%
GGTCCTCCTCTCTTATCAAA+CGG + chr8.1:39405898-39405917 None:intergenic 45.0%
GTCAAGTCGAGCTTCTTTAG+AGG + chr8.1:39406037-39406056 None:intergenic 45.0%
GTCCATCCAAGACTCACTTA+AGG - chr8.1:39405735-39405754 MS.gene009121:CDS 45.0%
GTTCACGAAGCTGTTGTATG+CGG + chr8.1:39406353-39406372 None:intergenic 45.0%
TCTCAAGAATGTCCACTCCA+CGG + chr8.1:39404464-39404483 None:intergenic 45.0%
TCTCCGTTTGATAAGAGAGG+AGG - chr8.1:39405892-39405911 MS.gene009121:intron 45.0%
TGTTACTACTGCGGTATGCT+GGG - chr8.1:39404885-39404904 MS.gene009121:intron 45.0%
TTAAAACGGAAGCTTCGGTG+AGG + chr8.1:39406183-39406202 None:intergenic 45.0%
TTCTCGGACATAAACCCTGT+TGG + chr8.1:39404666-39404685 None:intergenic 45.0%
TTGTTACTACTGCGGTATGC+TGG - chr8.1:39404884-39404903 MS.gene009121:intron 45.0%
TTTCTTTCACAACATGGGCG+AGG + chr8.1:39406230-39406249 None:intergenic 45.0%
! ATGATGGAGTCCGAAATTGG+GGG - chr8.1:39404952-39404971 MS.gene009121:intron 45.0%
! ATTTTCTTCTGGCGCTTCAG+AGG + chr8.1:39404804-39404823 None:intergenic 45.0%
! CATCAGAGTTTGGAACCTTG+GGG + chr8.1:39405109-39405128 None:intergenic 45.0%
! GATTGTATTGGTAGAAGCGG+TGG - chr8.1:39405643-39405662 MS.gene009121:CDS 45.0%
! GCATCAGAGTTTGGAACCTT+GGG + chr8.1:39405110-39405129 None:intergenic 45.0%
! GCTGAAGAAGTATAGGTGTG+TGG + chr8.1:39406137-39406156 None:intergenic 45.0%
! GGTTCGAGCTGAAGAAGTAT+AGG + chr8.1:39406144-39406163 None:intergenic 45.0%
! GTTTGGAACCTTGGGGTTAT+TGG + chr8.1:39405102-39405121 None:intergenic 45.0%
!! CAGATGATGGAGTCCGAAAT+TGG - chr8.1:39404949-39404968 MS.gene009121:intron 45.0%
!! GATGATGGAGTCCGAAATTG+GGG - chr8.1:39404951-39404970 MS.gene009121:intron 45.0%
!! TTTGCAAGGGCATCAGAGTT+TGG + chr8.1:39405119-39405138 None:intergenic 45.0%
!!! ACATTTTGGAATCCTGTCCG+TGG - chr8.1:39404444-39404463 MS.gene009121:CDS 45.0%
!!! ACTTGGGCTGATGTCACTTT+TGG + chr8.1:39405369-39405388 None:intergenic 45.0%
!!! CATTTTTTATCGGCAGGACC+TGG - chr8.1:39405422-39405441 MS.gene009121:CDS 45.0%
!!! CTGATGTCACTTTTGGCACT+AGG + chr8.1:39405362-39405381 None:intergenic 45.0%
!!! TCACAGCGTTTTGAAACCCT+CGG + chr8.1:39405942-39405961 None:intergenic 45.0%
!!! TGGCGTCTCACTGCTTTTTA+TGG - chr8.1:39405763-39405782 MS.gene009121:intron 45.0%
AAATGGTAGCCCGAATCAGG+TGG - chr8.1:39404599-39404618 MS.gene009121:CDS 50.0%
AAGCAGCGGAACAATAGCAG+TGG - chr8.1:39404993-39405012 MS.gene009121:intron 50.0%
AGTTGCGTGTAGAGAAGCAG+CGG - chr8.1:39404979-39404998 MS.gene009121:intron 50.0%
ATCATAGCTTGGAACTGCCG+AGG - chr8.1:39405472-39405491 MS.gene009121:CDS 50.0%
ATTGAAGGGCCACCTGATTC+GGG + chr8.1:39404611-39404630 None:intergenic 50.0%
CCGAGGCCTTGGAAATGTTA+AGG - chr8.1:39405489-39405508 MS.gene009121:CDS 50.0%
CCTCATCCGCGTCTATAAAC+CGG - chr8.1:39405531-39405550 MS.gene009121:CDS 50.0%
CCTCCACATGGTCATCATCA+TGG + chr8.1:39405214-39405233 None:intergenic 50.0%
CGACCTACTAGGAGAAGGTT+TGG + chr8.1:39404372-39404391 None:intergenic 50.0%
CGGACATAAACCCTGTTGGA+AGG + chr8.1:39404662-39404681 None:intergenic 50.0%
CTCGACGTCTGTTGTGTTCT+GGG + chr8.1:39405792-39405811 None:intergenic 50.0%
GACCCAAACCTTCTCCTAGT+AGG - chr8.1:39404366-39404385 MS.gene009121:intron 50.0%
GCGGATGAGGTCTTTGATAC+AGG + chr8.1:39405521-39405540 None:intergenic 50.0%
TCTCGACGTCTGTTGTGTTC+TGG + chr8.1:39405793-39405812 None:intergenic 50.0%
TGCAAATGGTAGCCCGAATC+AGG - chr8.1:39404596-39404615 MS.gene009121:CDS 50.0%
TGCTTCTCTACACGCAACTC+AGG + chr8.1:39404978-39404997 None:intergenic 50.0%
TGGTAGAAGCGGTGGTTTAG+CGG - chr8.1:39405651-39405670 MS.gene009121:CDS 50.0%
TGTATGCGGCTGTGAAAGTG+AGG + chr8.1:39406339-39406358 None:intergenic 50.0%
! CCATGATGATGACCATGTGG+AGG - chr8.1:39405211-39405230 MS.gene009121:intron 50.0%
! GGCATCAGAGTTTGGAACCT+TGG + chr8.1:39405111-39405130 None:intergenic 50.0%
! TGATTCGGGCTACCATTTGC+AGG + chr8.1:39404597-39404616 None:intergenic 50.0%
! TTCTGCCTTCCCTCAGCTTT+TGG + chr8.1:39405022-39405041 None:intergenic 50.0%
AACCCTCGGATGAGCCAAGA+TGG + chr8.1:39405928-39405947 None:intergenic 55.0%
AGAATGTCCACTCCACGGAC+AGG + chr8.1:39404459-39404478 None:intergenic 55.0%
AGGGAAGGCAGAAACAGTGG+TGG - chr8.1:39405029-39405048 MS.gene009121:intron 55.0%
ATGAGCCAAGATGGACGGTC+AGG + chr8.1:39405919-39405938 None:intergenic 55.0%
CAGCGGAACAATAGCAGTGG+TGG - chr8.1:39404996-39405015 MS.gene009121:intron 55.0%
CAGTGGTGGCCAAAAGCTGA+GGG - chr8.1:39405010-39405029 MS.gene009121:intron 55.0%
CATAGCTGAAACTGGCGCAG+AGG - chr8.1:39405307-39405326 MS.gene009121:intron 55.0%
CCGGTTTATAGACGCGGATG+AGG + chr8.1:39405534-39405553 None:intergenic 55.0%
CGCAGAGGCAACTTCAGACA+CGG - chr8.1:39405322-39405341 MS.gene009121:CDS 55.0%
CTCGGATGAGCCAAGATGGA+CGG + chr8.1:39405924-39405943 None:intergenic 55.0%
CTGAGGGAAGGCAGAAACAG+TGG - chr8.1:39405026-39405045 MS.gene009121:intron 55.0%
GAAGGCAGAAACAGTGGTGG+AGG - chr8.1:39405032-39405051 MS.gene009121:intron 55.0%
GCAACTCAGGCCCCCAATTT+CGG + chr8.1:39404965-39404984 None:intergenic 55.0%
GCTCAGAGAGAGCTGGTGAA+GGG + chr8.1:39404292-39404311 None:intergenic 55.0%
GTCCATCTTGGCTCATCCGA+GGG - chr8.1:39405923-39405942 MS.gene009121:intron 55.0%
TGATATTCATGGCTCCCGGC+AGG + chr8.1:39405456-39405475 None:intergenic 55.0%
TGCGGCTGTGAAAGTGAGGA+TGG + chr8.1:39406335-39406354 None:intergenic 55.0%
TGGGAGCTTCTGCGCTATCT+TGG - chr8.1:39405817-39405836 MS.gene009121:intron 55.0%
TTGGAATCCTGTCCGTGGAG+TGG - chr8.1:39404449-39404468 MS.gene009121:CDS 55.0%
TTGTGGGCCTCCCGAATCAT+TGG + chr8.1:39406400-39406419 None:intergenic 55.0%
! AGTGGTGGAGGAGCAGTTAC+AGG - chr8.1:39405044-39405063 MS.gene009121:intron 55.0%
! TTCAGCTCGAACCGGTTCCA+TGG - chr8.1:39406151-39406170 MS.gene009121:CDS 55.0%
CCAGCTCTCTCTGAGCGATG+AGG - chr8.1:39404296-39404315 MS.gene009121:CDS 60.0%
CCTCATCGCTCAGAGAGAGC+TGG + chr8.1:39404299-39404318 None:intergenic 60.0%
CGCTCAGAGAGAGCTGGTGA+AGG + chr8.1:39404293-39404312 None:intergenic 60.0%
CGTCCATCTTGGCTCATCCG+AGG - chr8.1:39405922-39405941 MS.gene009121:intron 60.0%
GAGGACCTGACCGTCCATCT+TGG - chr8.1:39405911-39405930 MS.gene009121:intron 60.0%
GCAGTGGTGGCCAAAAGCTG+AGG - chr8.1:39405009-39405028 MS.gene009121:intron 60.0%
GCGGTGGTTTAGCGGTTCTC+TGG - chr8.1:39405659-39405678 MS.gene009121:CDS 60.0%
GGTGGCCAAAAGCTGAGGGA+AGG - chr8.1:39405014-39405033 MS.gene009121:intron 60.0%
! TGAGGAGTGCGCCATGGAAC+CGG + chr8.1:39406165-39406184 None:intergenic 60.0%
GCTTGGAACTGCCGAGGCCT+TGG - chr8.1:39405478-39405497 MS.gene009121:CDS 65.0%
! CTTCGGTGAGGAGTGCGCCA+TGG + chr8.1:39406171-39406190 None:intergenic 65.0%
ATCGGCAGGACCTGGCAGCC+AGG - chr8.1:39405430-39405449 MS.gene009121:CDS 70.0%
TTCATGGCTCCCGGCAGGCC+TGG + chr8.1:39405451-39405470 None:intergenic 70.0%
ACCTGGCAGCCAGGCCTGCC+GGG - chr8.1:39405439-39405458 MS.gene009121:CDS 75.0%
GACCTGGCAGCCAGGCCTGC+CGG - chr8.1:39405438-39405457 MS.gene009121:CDS 75.0%
! TCCCGGCAGGCCTGGCTGCC+AGG + chr8.1:39405443-39405462 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 39404282 39406426 39404282 ID=MS.gene009121
chr8.1 mRNA 39404282 39406426 39404282 ID=MS.gene009121.t1;Parent=MS.gene009121
chr8.1 exon 39406105 39406426 39406105 ID=MS.gene009121.t1.exon1;Parent=MS.gene009121.t1
chr8.1 CDS 39406105 39406426 39406105 ID=cds.MS.gene009121.t1;Parent=MS.gene009121.t1
chr8.1 exon 39405322 39405756 39405322 ID=MS.gene009121.t1.exon2;Parent=MS.gene009121.t1
chr8.1 CDS 39405322 39405756 39405322 ID=cds.MS.gene009121.t1;Parent=MS.gene009121.t1
chr8.1 exon 39404387 39404764 39404387 ID=MS.gene009121.t1.exon3;Parent=MS.gene009121.t1
chr8.1 CDS 39404387 39404764 39404387 ID=cds.MS.gene009121.t1;Parent=MS.gene009121.t1
chr8.1 exon 39404282 39404358 39404282 ID=MS.gene009121.t1.exon4;Parent=MS.gene009121.t1
chr8.1 CDS 39404282 39404358 39404282 ID=cds.MS.gene009121.t1;Parent=MS.gene009121.t1
Gene Sequence

>MS.gene009121

ATGGCTTCCCTTCACCAGCTCTCTCTGAGCGATGAGGAAGATGAGCTTGAATTACAACCAGATCTCATCTCTTCAAAATCAGCTGACCCAAACCTTCTCCTAGTAGGTCGTTTTTTGACAAATAGACCTATCCGTTCGTATATGATGATGGAAAAAATTGACACATTTTGGAATCCTGTCCGTGGAGTGGACATTCTTGAGATTGAACCGGGTCTCTATACTTTCCAATTCTCCCATCACCTTGATATGCAAAGAGTTTTAAGAAAAGGCCCTTGGTACTTTGACAACCATCTTCTGGTTCTTGATGTTGTTCCTGCAAATGGTAGCCCGAATCAGGTGGCCCTTCAATTTGTACCGTTCTGGGTTCAGATACATGACCTTCCAACAGGGTTTATGTCCGAGAAAGTGGGAAAAGACATAGGCAATTACATTGGGGAATTCCTTGAGTACGATGCCAAAAACAACTCCAACTTCCTCCGTAATTACATGAAAATTCGTGTCTTGCTCGATGTCACGAAGCCTCTGAAGCGCCAGAAGAAAATAAAGAAAACTGGAGGCGAAACAAGCATGATTAAATTCAAGTATGAACGTCTGGGAAATTTTTGTTACTACTGCGGTATGCTGGGCCATATTGAAGATTACTGTGAGAAATTATATTCGGTAAATGCAGATGATGGAGTCCGAAATTGGGGGCCTGAGTTGCGTGTAGAGAAGCAGCGGAACAATAGCAGTGGTGGCCAAAAGCTGAGGGAAGGCAGAAACAGTGGTGGAGGAGCAGTTACAGGAGCTCCCTCGAGTAATAATGAGTCATTAATTGCCAATAACCCCAAGGTTCCAAACTCTGATGCCCTTGCAAATCTGTTACGGAATCCTCATTTAATTCGGCCTTCAAATCAGGTAAATGCAGCGGCTACAGTTTCTAATGCAATCCATGATGATGACCATGTGGAGGAAGAAAATAATACTGTCATTATTACAAATAAAGGAAAAAGATCAAGGGAATTGAATGACAGTGAAGTGAAAGACATAGCTGAAACTGGCGCAGAGGCAACTTCAGACACGGCTCCAAATTCTCTTCCTAGTGCCAAAAGTGACATCAGCCCAAGTAATCATTCTCCCATGGACATAACTCAGACAAGTCATTTTTTATCGGCAGGACCTGGCAGCCAGGCCTGCCGGGAGCCATGAATATCATAGCTTGGAACTGCCGAGGCCTTGGAAATGTTAAGGCAGTTCCCTGTATCAAAGACCTCATCCGCGTCTATAAACCGGATATCCTTATTCTTATTGAAACCTTATGCAATGATAATAAAATTTCTAGTTTGCGTTACTCTATTGGTTTTGATTATTATTTTTCTGTTGATTGTATTGGTAGAAGCGGTGGTTTAGCGGTTCTCTGGCGATCTACTGCTAATTGTTCTATTATAAACTACTCCCAAAACTTTATCAACTTGTCCATCCAAGACTCACTTAAGGGTAATTGGCGTCTCACTGCTTTTTATGGTTTCCCAGAACACAACAGACGTCGAGATTCATGGGAGCTTCTGCGCTATCTTGGTAATTTATCAAATGAACCTTGGTGCATTATAGGCGATTTTAATGATCACTTATCTCCGTTTGATAAGAGAGGAGGACCTGACCGTCCATCTTGGCTCATCCGAGGGTTTCAAAACGCTGTGAATGATTGTGCCCTCTATGATCTCCCTCTTGTTGGCTATCAATTCACTTGGTTCAAAAGTATCGGCACAAATTCCTCTAAAGAAGCTCGACTTGACAGAGCCTTATGCACTAATTCTTGGCAAGAGATTTTTCCGCAAGCAATTCTCCAATCACTTGTTGCGCCTATGTCAGACCACACACCTATACTTCTTCAGCTCGAACCGGTTCCATGGCGCACTCCTCACCGAAGCTTCCGTTTTAATAATTCTTGGCTGATTGAAGCAGACCTCGCCCATGTTGTGAAAGAAAATTGGAGCTATTATCCTTCAAATAACATTGTGGCCAAGCTTAGCTACTGCATTGAGGATATGAAATCATGGAGTAAGTCTAACCATCCTCACTTTCACAGCCGCATACAACAGCTTCGTGAACGTATTGATGTTGCGCGTAATTCTTCCAATGATTCGGGAGGCCCACAACTTCTAG
Protein sequence

>MS.gene009121.t1

MASLHQLSLSDEEDELELQPDLISSKSADPNLLLVGRFLTNRPIRSYMMMEKIDTFWNPVRGVDILEIEPGLYTFQFSHHLDMQRVLRKGPWYFDNHLLVLDVVPANDDGVRNWGPELRVEKQRNNSSGGQKLREGRNSGGGAVTGAPSSNNESLIANNPKVPNSDALANLLRNPHLIRPSNQVNAAATVSNAIHDDDHVEEENNTVIITNKGKRSRELNDSEVKDIAETGAEATSDTAPNSLPSAKSDISPRFQNAVNDCALYDLPLVGYQFTWFKSIGTNSSKEARLDRALCTNSWQEIFPQAILQSLVAPMSDHTPILLQLEPVPWRTPHRSFRFNNSWLIEADLAHVVKENWSYYPSNNIVAKLSYCIEDMKSWTAYNSFVNVLMLRVILPMIREAHNF