AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055560.t1 MTR_3g053920 51.582 316 91 7 99 388 1 280 6.08e-84 259
MS.gene055560.t1 MTR_4g103530 43.805 226 71 4 136 356 8 182 4.97e-52 174
MS.gene055560.t1 MTR_2g061500 67.442 129 18 1 99 203 1 129 2.34e-51 170
MS.gene055560.t1 MTR_7g011710 66.234 77 26 0 137 213 9 85 1.81e-30 115
MS.gene055560.t1 MTR_6g033215 35.385 130 82 1 146 273 165 294 1.97e-23 100
MS.gene055560.t1 MTR_0010s0370 40.000 105 61 1 149 251 73 177 1.18e-21 92.4
MS.gene055560.t1 MTR_0010s0350 40.000 105 61 1 149 251 73 177 1.18e-21 92.4
MS.gene055560.t1 MTR_8g463110 57.955 88 37 0 331 418 1 88 7.55e-18 86.7
MS.gene055560.t1 MTR_3g024240 31.746 126 81 3 158 278 55 180 3.17e-11 62.8
MS.gene055560.t1 MTR_7g089990 36.111 108 65 2 180 283 86 193 7.91e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055560.t1 AT2G17920 26.923 182 128 3 143 321 71 250 1.67e-19 89.4
MS.gene055560.t1 AT5G36228 29.775 178 116 4 143 317 71 242 5.33e-17 82.4
MS.gene055560.t1 AT3G57587 30.282 142 95 2 151 290 80 219 3.22e-16 80.1
MS.gene055560.t1 AT2G41590 29.577 142 96 2 151 290 80 219 2.38e-15 77.8
MS.gene055560.t1 AT3G31430 28.302 159 102 4 134 289 162 311 9.38e-15 75.5
MS.gene055560.t1 AT3G47920 28.873 142 97 2 151 290 9 148 3.20e-14 73.6
MS.gene055560.t1 AT5G25200 27.152 151 105 3 143 290 71 219 4.42e-13 70.9
MS.gene055560.t1 AT5G18636 27.152 151 105 3 143 290 71 219 5.06e-13 70.5
MS.gene055560.t1 AT2G02103 27.815 151 104 3 143 290 71 219 5.64e-13 70.9
MS.gene055560.t1 AT2G13450 27.660 141 98 2 151 289 80 218 8.35e-13 70.1
MS.gene055560.t1 AT4G02000 27.941 136 94 2 157 290 6 139 3.21e-12 67.8

Find 140 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCAGCATCATGTTGATTT+TGG 0.134036 1.2:+60139364 None:intergenic
TCCAAAACGGCAGCGGTTTC+AGG 0.211234 1.2:+60140048 None:intergenic
ACCTGAAACCGCTGCCGTTT+TGG 0.217365 1.2:-60140049 MS.gene055560:CDS
TTTGGGCTGCTGCCGCATCT+TGG 0.238682 1.2:-60140358 MS.gene055560:CDS
TTTCTAGTGCCACCCTCCTT+TGG 0.277016 1.2:-60140376 MS.gene055560:CDS
TTCTAGTGCCACCCTCCTTT+GGG 0.277962 1.2:-60140375 MS.gene055560:CDS
CCGCCGACAGTTCTTGCATT+TGG 0.285178 1.2:+60141995 None:intergenic
TCTCTTCCAGTTTCACTATA+AGG 0.289552 1.2:-60139900 MS.gene055560:CDS
TTGGGCTGCTGCCGCATCTT+GGG 0.315762 1.2:-60140357 MS.gene055560:CDS
TGGCTCGGAGCTGAGGAAAA+TGG 0.325324 1.2:-60139046 MS.gene055560:CDS
TGATTCTCATATAGGAACTA+TGG 0.325620 1.2:+60139651 None:intergenic
CATCTACCTTATAGTGAAAC+TGG 0.329724 1.2:+60139894 None:intergenic
CAGGTTCATGGGCTACCTTT+TGG 0.336188 1.2:-60139752 MS.gene055560:CDS
ATTTGATGCTGATGGGGCTT+TGG 0.344122 1.2:-60138972 MS.gene055560:CDS
CAGGTTCGGATGCTAGGTTT+AGG 0.344831 1.2:+60140067 None:intergenic
TGCTTGCAAAGTGCACCTTC+TGG 0.349033 1.2:-60139184 MS.gene055560:CDS
TGACACTTTGATTCTCATAT+AGG 0.351145 1.2:+60139643 None:intergenic
AGGTTCGGATGCTAGGTTTA+GGG 0.352638 1.2:+60140068 None:intergenic
GCATCTGTAGCTCGGCCAGC+AGG 0.352925 1.2:+60139339 None:intergenic
TCATGGCAGTGAGTTGGTTC+TGG 0.357011 1.2:+60139268 None:intergenic
TGTCACATGTGTGGAGTTAT+CGG 0.359505 1.2:-60139521 MS.gene055560:CDS
CCTAACGTCGGTCAAGGTAT+AGG 0.366982 1.2:-60139719 MS.gene055560:CDS
GCTGCTGCCGCATCTTGGGC+TGG 0.383629 1.2:-60140353 MS.gene055560:CDS
TTTGATGCTGATGGGGCTTT+GGG 0.385396 1.2:-60138971 MS.gene055560:CDS
GCAGGGAAGCCGAGCACTAA+AGG 0.390412 1.2:+60139114 None:intergenic
AACGGCAGCGGTTTCAGGTT+CGG 0.392436 1.2:+60140053 None:intergenic
GATGAAGTGTATGAGGAAAA+TGG 0.393876 1.2:-60139066 MS.gene055560:CDS
ATATCGATCATCCACAGATT+TGG 0.394768 1.2:+60139922 None:intergenic
TGAGGAAAATGGCTCGGATC+TGG 0.401645 1.2:-60139035 MS.gene055560:CDS
AGCAAGGACATCTTGTTTCA+TGG 0.401955 1.2:+60139251 None:intergenic
CCCACACACCTAAGTCTTGA+TGG 0.407648 1.2:-60140117 MS.gene055560:CDS
CCTAGGGTTTCCACCTCCTA+AGG 0.407857 1.2:-60140399 MS.gene055560:intron
CCAAGCGGGGTTGTGTTTGT+TGG 0.414645 1.2:-60141752 MS.gene055560:intron
CAACAAACACAACCCCGCTT+GGG 0.419518 1.2:+60141753 None:intergenic
AACCCCGCTTGGGGTTTCAA+TGG 0.419821 1.2:+60141763 None:intergenic
CGGTTTCAGGTTCGGATGCT+AGG 0.422535 1.2:+60140061 None:intergenic
AGATACGGTCCATGACAATA+TGG 0.424155 1.2:+60139828 None:intergenic
GCTACAGATGCTGCTGATAC+AGG 0.426527 1.2:-60139327 MS.gene055560:CDS
TCGGAAACGTGTTGGTGGGT+GGG 0.428224 1.2:-60141947 MS.gene055560:CDS
CTGCTGTTTCACCGATTCCA+TGG 0.429205 1.2:-60140142 MS.gene055560:CDS
ACAAAAGACGCGACAGTACC+AGG 0.435415 1.2:+60139803 None:intergenic
CATGATGCTGCTGTCCCTGC+TGG 0.442048 1.2:-60139354 MS.gene055560:CDS
CCATCTTCGCGCCTGTGTTA+CGG 0.443611 1.2:-60141916 MS.gene055560:intron
CCGACAGTTCTTGCATTTGG+AGG 0.445715 1.2:+60141998 None:intergenic
CAGGGAAGCCGAGCACTAAA+GGG 0.448125 1.2:+60139115 None:intergenic
TTAGTGCTCGGCTTCCCTGC+TGG 0.450841 1.2:-60139111 MS.gene055560:CDS
CCAGGTCGCCCTTTAGTGCT+CGG 0.453384 1.2:-60139123 MS.gene055560:CDS
TTCGGAAACGTGTTGGTGGG+TGG 0.460616 1.2:-60141948 MS.gene055560:CDS
AGGAACTATGGATAGAATTA+CGG 0.463173 1.2:+60139663 None:intergenic
ACACGCCACTCTTTCTTAAG+TGG 0.469272 1.2:+60139605 None:intergenic
CTTGTTTCATGGCAGTGAGT+TGG 0.470847 1.2:+60139262 None:intergenic
CCAACAAACACAACCCCGCT+TGG 0.478483 1.2:+60141752 None:intergenic
CTTATGCTTGCCCTTCAGAA+TGG 0.483019 1.2:-60139001 MS.gene055560:CDS
TGCATGGAAGCCAGACAAAC+GGG 0.483976 1.2:-60139954 MS.gene055560:intron
TCAGTCACAAACGGACCAGC+AGG 0.487166 1.2:+60139096 None:intergenic
GGCCGAAGTTCCTGTGGAGG+AGG 0.489482 1.2:+60139158 None:intergenic
TCGGCCTCTAGCTTGCTGCC+AGG 0.493541 1.2:-60139141 MS.gene055560:CDS
AACTGTCGGCGGCTTTCCGA+TGG 0.496320 1.2:-60141984 MS.gene055560:CDS
ATCGAGCCTAACGTCGGTCA+AGG 0.498663 1.2:-60139725 MS.gene055560:CDS
ACAGTTCTTGCATTTGGAGG+TGG 0.507323 1.2:+60142001 None:intergenic
TGGTTTCGGAAACGTGTTGG+TGG 0.509300 1.2:-60141952 MS.gene055560:CDS
CGACAATTTCCATATTGTCA+TGG 0.510596 1.2:-60139837 MS.gene055560:CDS
TCTTGCATTTGGAGGTGGTA+CGG 0.510729 1.2:+60142006 None:intergenic
ATGCGGCAGCAGCCCAAAGG+AGG 0.512313 1.2:+60140363 None:intergenic
CCGAGCACTAAAGGGCGACC+TGG 0.514417 1.2:+60139123 None:intergenic
GGAGAACCATTTGATGCTGA+TGG 0.514601 1.2:-60138980 MS.gene055560:CDS
ACTTAGGTGTGTGGGATCCA+TGG 0.514712 1.2:+60140125 None:intergenic
TGGTCTTACCTTGTCAGAGG+AGG 0.519285 1.2:-60140097 MS.gene055560:CDS
CATGGAATCGGTGAAACAGC+AGG 0.523003 1.2:+60140143 None:intergenic
AAGATGCGGCAGCAGCCCAA+AGG 0.524383 1.2:+60140360 None:intergenic
GTGCATGGAAGCCAGACAAA+CGG 0.524977 1.2:-60139955 MS.gene055560:intron
ATGGCTCGGATCTGGAGAAA+AGG 0.533743 1.2:-60139027 MS.gene055560:CDS
CCGTAACACAGGCGCGAAGA+TGG 0.534498 1.2:+60141916 None:intergenic
GATTCTAACTCGAACAGCTC+CGG 0.534821 1.2:+60139479 None:intergenic
ACTGTCGATGCCCAGGCGTG+TGG 0.535206 1.2:-60141804 MS.gene055560:intron
TGGAAATTGTCGTAAAGCCA+TGG 0.540044 1.2:+60139848 None:intergenic
CTTCTGGCTTCCTCCTCCAC+AGG 0.542644 1.2:-60139168 MS.gene055560:CDS
AAAGCCCCATCAGCATCAAA+TGG 0.543152 1.2:+60138974 None:intergenic
GTGAAACAGCAGGGAAAACA+AGG 0.544811 1.2:+60140153 None:intergenic
TTCCTCCTCCACAGGAACTT+CGG 0.544846 1.2:-60139160 MS.gene055560:CDS
CAAATGGTTCTCCATTCTGA+AGG 0.545420 1.2:+60138990 None:intergenic
CATCTGTAGCTCGGCCAGCA+GGG 0.545795 1.2:+60139340 None:intergenic
GTTCCATTGAAACCCCAAGC+GGG 0.547931 1.2:-60141766 MS.gene055560:CDS
AAACAATGATGAAGTGTATG+AGG 0.549030 1.2:-60139073 MS.gene055560:CDS
ACATACCGACAAAGTGTGTC+CGG 0.552011 1.2:-60139498 MS.gene055560:CDS
CGACAGTACCAGGGGAGATA+CGG 0.553321 1.2:+60139813 None:intergenic
CAAAAGACGCGACAGTACCA+GGG 0.553329 1.2:+60139804 None:intergenic
AGGAAAATGGCTCGGAGCTG+AGG 0.554390 1.2:-60139053 MS.gene055560:CDS
AGGTAAGACCATCAAGACTT+AGG 0.558306 1.2:+60140109 None:intergenic
GCACTAGAAACCTTAGGAGG+TGG 0.559243 1.2:+60140389 None:intergenic
CACGCCACTCTTTCTTAAGT+GGG 0.561128 1.2:+60139606 None:intergenic
CCTATACCTTGACCGACGTT+AGG 0.561749 1.2:+60139719 None:intergenic
CGGAGCTGAGGAAAATGGCT+CGG 0.561908 1.2:-60139041 MS.gene055560:CDS
TGATGGTCTTACCTTGTCAG+AGG 0.562010 1.2:-60140100 MS.gene055560:CDS
CAGCTCCGGACACACTTTGT+CGG 0.563584 1.2:+60139493 None:intergenic
GGTTTCGGAAACGTGTTGGT+GGG 0.564677 1.2:-60141951 MS.gene055560:CDS
GTCATGGACCGTATCTCCCC+TGG 0.565924 1.2:-60139821 MS.gene055560:CDS
AATCAGACAGTGTTCCAAAA+CGG 0.566213 1.2:+60140035 None:intergenic
GGTCTTACCTTGTCAGAGGA+GGG 0.570914 1.2:-60140096 MS.gene055560:CDS
GCGACCTGGCAGCAAGCTAG+AGG 0.573751 1.2:+60139137 None:intergenic
GTATGGTTTCGGAAACGTGT+TGG 0.578706 1.2:-60141955 MS.gene055560:CDS
TTAGGCTCGATAAAACCAAA+AGG 0.579046 1.2:+60139737 None:intergenic
AACAAACACAACCCCGCTTG+GGG 0.579072 1.2:+60141754 None:intergenic
GAGAACCATTTGATGCTGAT+GGG 0.580461 1.2:-60138979 MS.gene055560:CDS
CCATCAAGACTTAGGTGTGT+GGG 0.586050 1.2:+60140117 None:intergenic
AGCAGGGAAAACAAGGGGAA+TGG 0.589003 1.2:+60140160 None:intergenic
AGGGTGGCACTAGAAACCTT+AGG 0.593818 1.2:+60140383 None:intergenic
GTGTGTGGGATCCATGGAAT+CGG 0.595489 1.2:+60140131 None:intergenic
ACAGTGTTCCAAAACGGCAG+CGG 0.595940 1.2:+60140041 None:intergenic
TTCGAGTTAGAATCAGATGA+TGG 0.601513 1.2:-60139470 MS.gene055560:intron
GGTTCTGGAAAGCAAGCATA+CGG 0.604437 1.2:+60139283 None:intergenic
GAAACCATACGCAAAACCAT+CGG 0.604472 1.2:+60141968 None:intergenic
TGCGGCAGCAGCCCAAAGGA+GGG 0.605312 1.2:+60140364 None:intergenic
AGAGGCCGAAGTTCCTGTGG+AGG 0.608452 1.2:+60139155 None:intergenic
TATCAGCAGCATCTGTAGCT+CGG 0.610243 1.2:+60139331 None:intergenic
CTGTCCCACTTAAGAAAGAG+TGG 0.611280 1.2:-60139610 MS.gene055560:CDS
CCTCCAAATGCAAGAACTGT+CGG 0.613230 1.2:-60141998 MS.gene055560:CDS
GCTAGAGGCCGAAGTTCCTG+TGG 0.616439 1.2:+60139152 None:intergenic
GGCAGCAGCCCAAAGGAGGG+TGG 0.618484 1.2:+60140367 None:intergenic
TTCCATTGAAACCCCAAGCG+GGG 0.625593 1.2:-60141765 MS.gene055560:CDS
GAAAATACTCACCGTAACAC+AGG 0.627358 1.2:+60141905 None:intergenic
ACCATCAAGACTTAGGTGTG+TGG 0.628252 1.2:+60140116 None:intergenic
TGGCGTGTTCGTGCTAGTAA+TGG 0.629117 1.2:-60139590 MS.gene055560:CDS
ATGGAATCGGTGAAACAGCA+GGG 0.632068 1.2:+60140144 None:intergenic
AAAAGACGCGACAGTACCAG+GGG 0.634056 1.2:+60139805 None:intergenic
AGTGTATGAGGAAAATGGCT+CGG 0.634209 1.2:-60139061 MS.gene055560:CDS
GGTTATGATCACCAAATCTG+TGG 0.636824 1.2:-60139933 MS.gene055560:CDS
GGTTAGACCCTCCTCTGACA+AGG 0.637786 1.2:+60140089 None:intergenic
AAATGGTTCTCCATTCTGAA+GGG 0.638265 1.2:+60138991 None:intergenic
CTGTGGAGGAGGAAGCCAGA+AGG 0.646790 1.2:+60139169 None:intergenic
AGAACCATTTGATGCTGATG+GGG 0.651003 1.2:-60138978 MS.gene055560:CDS
CAGTCACAAACGGACCAGCA+GGG 0.653798 1.2:+60139097 None:intergenic
TGCATTTGGAGGTGGTACGG+AGG 0.654512 1.2:+60142009 None:intergenic
GGAAGATCCAGCCCAAGATG+CGG 0.654826 1.2:+60140346 None:intergenic
TAACACAGGCGCGAAGATGG+TGG 0.660136 1.2:+60141919 None:intergenic
GAAACAGCAGGGAAAACAAG+GGG 0.683285 1.2:+60140155 None:intergenic
TGAAACAGCAGGGAAAACAA+GGG 0.693279 1.2:+60140154 None:intergenic
GTGGCACTAGAAACCTTAGG+AGG 0.721602 1.2:+60140386 None:intergenic
AGTTCCATTGAAACCCCAAG+CGG 0.729416 1.2:-60141767 MS.gene055560:CDS
CCAAATGCAAGAACTGTCGG+CGG 0.741388 1.2:-60141995 MS.gene055560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTATTTTTTAATATGTA+TGG + chr1.2:60139990-60140009 None:intergenic 10.0%
!! ATAGAAAGAAAATATACAAA+TGG - chr1.2:60139379-60139398 MS.gene055560:intron 15.0%
!! TAATAATATATATGAGCAAT+TGG - chr1.2:60140502-60140521 MS.gene055560:intron 15.0%
!!! AAAATAAGTTTGATTTATTC+TGG - chr1.2:60140000-60140019 MS.gene055560:intron 15.0%
!!! ATTTTCAATTTTTGATTGAA+GGG + chr1.2:60139549-60139568 None:intergenic 15.0%
!!! GTTTAGTATTACTTTTATTT+TGG + chr1.2:60139689-60139708 None:intergenic 15.0%
!!! TATTTTCAATTTTTGATTGA+AGG + chr1.2:60139550-60139569 None:intergenic 15.0%
!!! TTTAATGTTAGATTTGTTTA+GGG - chr1.2:60140366-60140385 MS.gene055560:CDS 15.0%
!! AAAAATTACATAAAAACTGG+GGG + chr1.2:60140474-60140493 None:intergenic 20.0%
!! AAAATAAAAAATCCACAAAG+TGG + chr1.2:60140398-60140417 None:intergenic 20.0%
!! AAACAAATTGTCTCTATATA+TGG - chr1.2:60140554-60140573 MS.gene055560:intron 20.0%
!! AACTTTAAGTATGAAAAACT+CGG - chr1.2:60141428-60141447 MS.gene055560:intron 20.0%
!! AATTCAAGAAAATTACACTT+AGG + chr1.2:60139303-60139322 None:intergenic 20.0%
!! AGGAAAAATTACATAAAAAC+TGG + chr1.2:60140477-60140496 None:intergenic 20.0%
!! CAAAAATCAATATGATTCAA+GGG + chr1.2:60141203-60141222 None:intergenic 20.0%
!! CACTAAAGAAAATAACATAT+TGG - chr1.2:60139727-60139746 MS.gene055560:CDS 20.0%
!! GAAAAATTACATAAAAACTG+GGG + chr1.2:60140475-60140494 None:intergenic 20.0%
!! GGAAAAATTACATAAAAACT+GGG + chr1.2:60140476-60140495 None:intergenic 20.0%
!!! CTTGAATCATATTGATTTTT+GGG - chr1.2:60141202-60141221 MS.gene055560:intron 20.0%
!!! GTTTAATGTTAGATTTGTTT+AGG - chr1.2:60140365-60140384 MS.gene055560:CDS 20.0%
!!! TTTTCTTTCTATTCATAGTT+TGG + chr1.2:60139371-60139390 None:intergenic 20.0%
! AACAAATCTAACATTAAACG+CGG + chr1.2:60140364-60140383 None:intergenic 25.0%
! AATAAGGAACTAGAAAAACA+AGG - chr1.2:60139649-60139668 MS.gene055560:CDS 25.0%
! CCAAAAATCAATATGATTCA+AGG + chr1.2:60141204-60141223 None:intergenic 25.0%
! TGAAAACCAGATGAATAAAT+AGG + chr1.2:60140711-60140730 None:intergenic 25.0%
! TGAATTGAGATAGAAAATGA+AGG - chr1.2:60139317-60139336 MS.gene055560:CDS 25.0%
!! AAGTTTTCTAGGTACATTTA+GGG - chr1.2:60141283-60141302 MS.gene055560:intron 25.0%
!! CAATCATGTTATCATTTTGA+AGG + chr1.2:60139590-60139609 None:intergenic 25.0%
!! TGTTATTTATACCTACTCAT+TGG - chr1.2:60139608-60139627 MS.gene055560:CDS 25.0%
!!! CCTTGAATCATATTGATTTT+TGG - chr1.2:60141201-60141220 MS.gene055560:intron 25.0%
!!! GAGACAATTTGTTTTTATGT+TGG + chr1.2:60140548-60140567 None:intergenic 25.0%
!!! TGTTTTTCTAGTTCCTTATT+TGG + chr1.2:60139649-60139668 None:intergenic 25.0%
AAACAATGATGAAGTGTATG+AGG - chr1.2:60141906-60141925 MS.gene055560:intron 30.0%
AAATGGAATTAGATGAGAAG+TGG - chr1.2:60139396-60139415 MS.gene055560:intron 30.0%
AATGGAATTAGATGAGAAGT+GGG - chr1.2:60139397-60139416 MS.gene055560:intron 30.0%
ACAAATCTAACATTAAACGC+GGG + chr1.2:60140363-60140382 None:intergenic 30.0%
AGAATAAGATGCTCTTGATA+AGG - chr1.2:60139476-60139495 MS.gene055560:CDS 30.0%
AGGAACTATGGATAGAATTA+CGG + chr1.2:60141319-60141338 None:intergenic 30.0%
ATCACATATAAGGCCAAATA+AGG - chr1.2:60139633-60139652 MS.gene055560:CDS 30.0%
ATCGATTGTCAACACAAAAT+CGG + chr1.2:60140321-60140340 None:intergenic 30.0%
ATGTCAATCAATAGATGGTT+GGG + chr1.2:60140228-60140247 None:intergenic 30.0%
CTTGATCTTTATCTCTAATC+AGG - chr1.2:60139121-60139140 MS.gene055560:CDS 30.0%
GAATAGAAACATCTAGATCA+TGG + chr1.2:60140685-60140704 None:intergenic 30.0%
GAATTGCTCTTATAAGTTCT+TGG + chr1.2:60139519-60139538 None:intergenic 30.0%
GAATTTCATCATTTCACCAA+AGG + chr1.2:60140055-60140074 None:intergenic 30.0%
TCTTGATAAGGATCTAGATT+TGG - chr1.2:60139488-60139507 MS.gene055560:CDS 30.0%
TGAAATTCAATCTTGTGTCT+CGG - chr1.2:60140067-60140086 MS.gene055560:CDS 30.0%
TGACACTTTGATTCTCATAT+AGG + chr1.2:60141339-60141358 None:intergenic 30.0%
TGATTAAGCTTATGATCAGT+TGG - chr1.2:60140129-60140148 MS.gene055560:CDS 30.0%
TGATTCTCATATAGGAACTA+TGG + chr1.2:60141331-60141350 None:intergenic 30.0%
! ATGTTAGATTTGTTTAGGGT+TGG - chr1.2:60140370-60140389 MS.gene055560:CDS 30.0%
! GAAGTTTTCTAGGTACATTT+AGG - chr1.2:60141282-60141301 MS.gene055560:intron 30.0%
! TCATTGTTTTCAGTCACAAA+CGG + chr1.2:60141895-60141914 None:intergenic 30.0%
!! TCATGTTATCATTTTGAAGG+AGG + chr1.2:60139587-60139606 None:intergenic 30.0%
!! TTATTTGGCCTTATATGTGA+TGG + chr1.2:60139634-60139653 None:intergenic 30.0%
!!! TCATATTGATTTTTGGGTTC+AGG - chr1.2:60141208-60141227 MS.gene055560:intron 30.0%
AAATGGTTCTCCATTCTGAA+GGG + chr1.2:60141991-60142010 None:intergenic 35.0%
AACCAGATGAATAAATAGGC+AGG + chr1.2:60140707-60140726 None:intergenic 35.0%
AATCAGACAGTGTTCCAAAA+CGG + chr1.2:60140947-60140966 None:intergenic 35.0%
AATGCAGTGCATGCTAAAAA+AGG - chr1.2:60141757-60141776 MS.gene055560:CDS 35.0%
ATATCGATCATCCACAGATT+TGG + chr1.2:60141060-60141079 None:intergenic 35.0%
CATCATTTCACCAAAGGAAA+AGG + chr1.2:60140049-60140068 None:intergenic 35.0%
CATCTACCTTATAGTGAAAC+TGG + chr1.2:60141088-60141107 None:intergenic 35.0%
CATGTCAATCAATAGATGGT+TGG + chr1.2:60140229-60140248 None:intergenic 35.0%
CCTAAAAACGAACAAACCAA+CGG + chr1.2:60139803-60139822 None:intergenic 35.0%
CGACAATTTCCATATTGTCA+TGG - chr1.2:60141142-60141161 MS.gene055560:intron 35.0%
CTTATCGTTCATCTTGAATG+TGG + chr1.2:60139434-60139453 None:intergenic 35.0%
GATGAAGTGTATGAGGAAAA+TGG - chr1.2:60141913-60141932 MS.gene055560:intron 35.0%
GGATATGCTAATTACTGTGT+TGG - chr1.2:60140159-60140178 MS.gene055560:CDS 35.0%
GTCTCATGTCAATCAATAGA+TGG + chr1.2:60140233-60140252 None:intergenic 35.0%
GTGCATGCTAAAAAAGGTAA+CGG - chr1.2:60141763-60141782 MS.gene055560:CDS 35.0%
TATGCTAATTACTGTGTTGG+CGG - chr1.2:60140162-60140181 MS.gene055560:CDS 35.0%
TCAAGAAATATTCCTTACCG+CGG + chr1.2:60139106-60139125 None:intergenic 35.0%
TCTCTATATATGGTCTCCTA+GGG - chr1.2:60140564-60140583 MS.gene055560:intron 35.0%
TCTCTTCCAGTTTCACTATA+AGG - chr1.2:60141079-60141098 MS.gene055560:intron 35.0%
TGAACGATAAGATCGAATTG+CGG - chr1.2:60139443-60139462 MS.gene055560:intron 35.0%
TGTTGGTACACTACTCTAAT+CGG + chr1.2:60140531-60140550 None:intergenic 35.0%
TTAGGCTCGATAAAACCAAA+AGG + chr1.2:60141245-60141264 None:intergenic 35.0%
TTCCTGCCTATTTATTCATC+TGG - chr1.2:60140702-60140721 MS.gene055560:intron 35.0%
TTGATTGACATGAGACTGTA+TGG - chr1.2:60140237-60140256 MS.gene055560:intron 35.0%
! CAAGGTATAGGAAGTTTTCT+AGG - chr1.2:60141272-60141291 MS.gene055560:intron 35.0%
! CTTTTACACACCTTTTCCTT+TGG - chr1.2:60140036-60140055 MS.gene055560:CDS 35.0%
! TTATGATCAGTTGGTGTTTG+TGG - chr1.2:60140138-60140157 MS.gene055560:CDS 35.0%
! TTCGAGTTAGAATCAGATGA+TGG - chr1.2:60141509-60141528 MS.gene055560:intron 35.0%
! TTTAGCATGCACTGCATTTT+GGG + chr1.2:60141755-60141774 None:intergenic 35.0%
! TTTTAGCATGCACTGCATTT+TGG + chr1.2:60141756-60141775 None:intergenic 35.0%
!! GATTTATTCTGGCTTGTTTC+TGG - chr1.2:60140011-60140030 MS.gene055560:intron 35.0%
!! TCAAGAGCATCTTATTCTTG+TGG + chr1.2:60139474-60139493 None:intergenic 35.0%
!! TTGTATGATAGCTTGTTGTG+AGG - chr1.2:60140096-60140115 MS.gene055560:CDS 35.0%
!!! AACCACGACGAGTTTTAAAA+CGG + chr1.2:60139828-60139847 None:intergenic 35.0%
!!! ATTTTTGGGTTCAGGTTCAT+GGG - chr1.2:60141216-60141235 MS.gene055560:intron 35.0%
AAAGCGGTTTACAGGAACTA+GGG + chr1.2:60140755-60140774 None:intergenic 40.0%
ACGGACAAATGCTTGAAAGT+AGG + chr1.2:60140199-60140218 None:intergenic 40.0%
ACTCACGATGGTGTACAAAA+AGG - chr1.2:60139776-60139795 MS.gene055560:CDS 40.0%
AGAACCATTTGATGCTGATG+GGG - chr1.2:60142001-60142020 MS.gene055560:CDS 40.0%
AGACATTCGCTCACTGAAAT+AGG + chr1.2:60141003-60141022 None:intergenic 40.0%
AGATACGGTCCATGACAATA+TGG + chr1.2:60141154-60141173 None:intergenic 40.0%
AGCAGTACCAATGCATTGTT+GGG + chr1.2:60141567-60141586 None:intergenic 40.0%
AGGTAAGACCATCAAGACTT+AGG + chr1.2:60140873-60140892 None:intergenic 40.0%
AGTGTATGAGGAAAATGGCT+CGG - chr1.2:60141918-60141937 MS.gene055560:CDS 40.0%
ATAGATGGTTGGGATAACCA+CGG + chr1.2:60140218-60140237 None:intergenic 40.0%
ATATGTGATGGCCAATGAGT+AGG + chr1.2:60139622-60139641 None:intergenic 40.0%
ATGAGATGCAACTTCTCACA+AGG + chr1.2:60140657-60140676 None:intergenic 40.0%
CAAATGGTTCTCCATTCTGA+AGG + chr1.2:60141992-60142011 None:intergenic 40.0%
CAATAAGGATTCACCATGCA+AGG - chr1.2:60139269-60139288 MS.gene055560:CDS 40.0%
CGGACAAATGCTTGAAAGTA+GGG + chr1.2:60140198-60140217 None:intergenic 40.0%
CTCATTGGCCATCACATATA+AGG - chr1.2:60139623-60139642 MS.gene055560:CDS 40.0%
CTTGCATGGTGAATCCTTAT+TGG + chr1.2:60139271-60139290 None:intergenic 40.0%
GAAAATACTCACCGTAACAC+AGG + chr1.2:60139077-60139096 None:intergenic 40.0%
GAAACCATACGCAAAACCAT+CGG + chr1.2:60139014-60139033 None:intergenic 40.0%
GAGAACCATTTGATGCTGAT+GGG - chr1.2:60142000-60142019 MS.gene055560:CDS 40.0%
GATTTATCCAGGGGCTTATA+TGG - chr1.2:60139928-60139947 MS.gene055560:CDS 40.0%
GGACAAATGCTTGAAAGTAG+GGG + chr1.2:60140197-60140216 None:intergenic 40.0%
GGTTATGATCACCAAATCTG+TGG - chr1.2:60141046-60141065 MS.gene055560:intron 40.0%
GTCTCTATATATGGTCTCCT+AGG - chr1.2:60140563-60140582 MS.gene055560:intron 40.0%
TACTTTCAAGCATTTGTCCG+TGG - chr1.2:60140198-60140217 MS.gene055560:intron 40.0%
TCGATTCATTCGCCAAACTT+TGG - chr1.2:60140336-60140355 MS.gene055560:intron 40.0%
TGAAACAGCAGGGAAAACAA+GGG + chr1.2:60140828-60140847 None:intergenic 40.0%
TGGAAATTGTCGTAAAGCCA+TGG + chr1.2:60141134-60141153 None:intergenic 40.0%
TGTCACATGTGTGGAGTTAT+CGG - chr1.2:60141458-60141477 MS.gene055560:intron 40.0%
TTAGGTCAAAGATCCTTGCA+TGG + chr1.2:60139285-60139304 None:intergenic 40.0%
! ACTGTCTGATTGGTAGGTTT+TGG - chr1.2:60140956-60140975 MS.gene055560:intron 40.0%
! AGAGCATCTTATTCTTGTGG+CGG + chr1.2:60139471-60139490 None:intergenic 40.0%
! AGATGATGGTATTCGCAACT+GGG - chr1.2:60141523-60141542 MS.gene055560:intron 40.0%
! AGCAAGGACATCTTGTTTCA+TGG + chr1.2:60141731-60141750 None:intergenic 40.0%
!! ATGCTTGCTGTGATTTATCC+AGG - chr1.2:60139917-60139936 MS.gene055560:CDS 40.0%
!! GATGGTTTTGCGTATGGTTT+CGG - chr1.2:60139013-60139032 MS.gene055560:CDS 40.0%
!! TGCTTGCTGTGATTTATCCA+GGG - chr1.2:60139918-60139937 MS.gene055560:CDS 40.0%
!!! CAGCAGCATCATGTTGATTT+TGG + chr1.2:60141618-60141637 None:intergenic 40.0%
!!! CCGTTGGTTTGTTCGTTTTT+AGG - chr1.2:60139800-60139819 MS.gene055560:CDS 40.0%
!!! GATTTTTGGGTTCAGGTTCA+TGG - chr1.2:60141215-60141234 MS.gene055560:intron 40.0%
!!! GGTGTTTTTTGTCACATGTG+TGG - chr1.2:60141449-60141468 MS.gene055560:intron 40.0%
!!! GTTTTGGAACACTGTCTGAT+TGG - chr1.2:60140946-60140965 MS.gene055560:intron 40.0%
!!! TGTTGGGCAGGTTTTAGATA+CGG + chr1.2:60141551-60141570 None:intergenic 40.0%
!!! TTCCGTTTTAAAACTCGTCG+TGG - chr1.2:60139823-60139842 MS.gene055560:CDS 40.0%
AAAACTCGTCGTGGTTTCAC+TGG - chr1.2:60139832-60139851 MS.gene055560:CDS 45.0%
AAACCTGCCCAACAATGCAT+TGG - chr1.2:60141557-60141576 MS.gene055560:intron 45.0%
AAAGCCCCATCAGCATCAAA+TGG + chr1.2:60142008-60142027 None:intergenic 45.0%
AACATATTGGTCCTCGTCAG+CGG - chr1.2:60139740-60139759 MS.gene055560:CDS 45.0%
AAGGGAAGAAAGCGGTTTAC+AGG + chr1.2:60140763-60140782 None:intergenic 45.0%
ACACGCCACTCTTTCTTAAG+TGG + chr1.2:60141377-60141396 None:intergenic 45.0%
ACAGTTCTTGCATTTGGAGG+TGG + chr1.2:60138981-60139000 None:intergenic 45.0%
ACATACCGACAAAGTGTGTC+CGG - chr1.2:60141481-60141500 MS.gene055560:intron 45.0%
ACCATCAAGACTTAGGTGTG+TGG + chr1.2:60140866-60140885 None:intergenic 45.0%
ACCCAGTCAACAACTCAAAC+GGG + chr1.2:60140439-60140458 None:intergenic 45.0%
AGAGACAGACGCAAGACTAA+GGG + chr1.2:60140781-60140800 None:intergenic 45.0%
AGATCCAGTAATGATTCGCG+TGG - chr1.2:60139867-60139886 MS.gene055560:CDS 45.0%
AGGTTCGGATGCTAGGTTTA+GGG + chr1.2:60140914-60140933 None:intergenic 45.0%
AGTTCCATTGAAACCCCAAG+CGG - chr1.2:60139212-60139231 MS.gene055560:CDS 45.0%
ATCCAGTAATGATTCGCGTG+GGG - chr1.2:60139869-60139888 MS.gene055560:CDS 45.0%
ATGCTAGTTGTCGTTGTTGC+AGG - chr1.2:60140277-60140296 MS.gene055560:intron 45.0%
ATGGAATCGGTGAAACAGCA+GGG + chr1.2:60140838-60140857 None:intergenic 45.0%
ATTTGATGCTGATGGGGCTT+TGG - chr1.2:60142007-60142026 MS.gene055560:CDS 45.0%
CAAATGCTTGAAAGTAGGGG+TGG + chr1.2:60140194-60140213 None:intergenic 45.0%
CACGCCACTCTTTCTTAAGT+GGG + chr1.2:60141376-60141395 None:intergenic 45.0%
CAGCAGTACCAATGCATTGT+TGG + chr1.2:60141568-60141587 None:intergenic 45.0%
CAGCTGATGTGGATCCAATA+AGG - chr1.2:60139254-60139273 MS.gene055560:CDS 45.0%
CCATCAAGACTTAGGTGTGT+GGG + chr1.2:60140865-60140884 None:intergenic 45.0%
CCTCCAAATGCAAGAACTGT+CGG - chr1.2:60138981-60139000 MS.gene055560:CDS 45.0%
CTGTCCCACTTAAGAAAGAG+TGG - chr1.2:60141369-60141388 MS.gene055560:intron 45.0%
CTTATGCTTGCCCTTCAGAA+TGG - chr1.2:60141978-60141997 MS.gene055560:CDS 45.0%
CTTGTTTCATGGCAGTGAGT+TGG + chr1.2:60141720-60141739 None:intergenic 45.0%
GAAACAGCAGGGAAAACAAG+GGG + chr1.2:60140827-60140846 None:intergenic 45.0%
GAAAGCGGTTTACAGGAACT+AGG + chr1.2:60140756-60140775 None:intergenic 45.0%
GACCCAGTCAACAACTCAAA+CGG + chr1.2:60140440-60140459 None:intergenic 45.0%
GATCCAGTAATGATTCGCGT+GGG - chr1.2:60139868-60139887 MS.gene055560:CDS 45.0%
GATTCTAACTCGAACAGCTC+CGG + chr1.2:60141503-60141522 None:intergenic 45.0%
GCAAGACTAAGGGAAGAAAG+CGG + chr1.2:60140771-60140790 None:intergenic 45.0%
GCTCACTGAAATAGGCAATC+TGG + chr1.2:60140995-60141014 None:intergenic 45.0%
GGAGAACCATTTGATGCTGA+TGG - chr1.2:60141999-60142018 MS.gene055560:CDS 45.0%
GTATGGTTTCGGAAACGTGT+TGG - chr1.2:60139024-60139043 MS.gene055560:CDS 45.0%
GTGAAACAGCAGGGAAAACA+AGG + chr1.2:60140829-60140848 None:intergenic 45.0%
GTGATCATAACCCGTTTGTC+TGG + chr1.2:60141038-60141057 None:intergenic 45.0%
TATCAGCAGCATCTGTAGCT+CGG + chr1.2:60141651-60141670 None:intergenic 45.0%
TCTTGCATTTGGAGGTGGTA+CGG + chr1.2:60138976-60138995 None:intergenic 45.0%
TGCTAGTTGTCGTTGTTGCA+GGG - chr1.2:60140278-60140297 MS.gene055560:intron 45.0%
TGGAACACTGTCTGATTGGT+AGG - chr1.2:60140950-60140969 MS.gene055560:intron 45.0%
TGGTGTACAAAAAGGTCCGT+TGG - chr1.2:60139784-60139803 MS.gene055560:CDS 45.0%
TGTATGAACTACCGCCATCA+CGG + chr1.2:60139967-60139986 None:intergenic 45.0%
TTAAACGCGGGTCCAAAGTT+TGG + chr1.2:60140351-60140370 None:intergenic 45.0%
TTACGAACCATATAAGCCCC+TGG + chr1.2:60139938-60139957 None:intergenic 45.0%
TTAGGGTTGGATCCACTTTG+TGG - chr1.2:60140383-60140402 MS.gene055560:CDS 45.0%
TTTGATGCTGATGGGGCTTT+GGG - chr1.2:60142008-60142027 MS.gene055560:CDS 45.0%
! CAGATGATGGTATTCGCAAC+TGG - chr1.2:60141522-60141541 MS.gene055560:intron 45.0%
! GATGATGGTATTCGCAACTG+GGG - chr1.2:60141524-60141543 MS.gene055560:intron 45.0%
! GTTCGTAAGCTTTTCCGTGA+TGG - chr1.2:60139950-60139969 MS.gene055560:intron 45.0%
! TGATGGTCTTACCTTGTCAG+AGG - chr1.2:60140879-60140898 MS.gene055560:intron 45.0%
!! AGATGCTGCTCGTGTTTTAG+AGG - chr1.2:60141103-60141122 MS.gene055560:intron 45.0%
!! AGCTTGTTGTGAGGCAGAAA+TGG - chr1.2:60140105-60140124 MS.gene055560:CDS 45.0%
!! CTTTCCGATGGTTTTGCGTA+TGG - chr1.2:60139007-60139026 MS.gene055560:CDS 45.0%
!! GCTTGCTGTGATTTATCCAG+GGG - chr1.2:60139919-60139938 MS.gene055560:CDS 45.0%
!! GGTTCTGGAAAGCAAGCATA+CGG + chr1.2:60141699-60141718 None:intergenic 45.0%
!! GGTTTTATCGAGCCTAACGT+CGG - chr1.2:60141248-60141267 MS.gene055560:intron 45.0%
!! TTTGAGTTGTTGACTGGGTC+AGG - chr1.2:60140440-60140459 MS.gene055560:intron 45.0%
!!! GCATCATGTTGATTTTGGCG+CGG + chr1.2:60141613-60141632 None:intergenic 45.0%
!!! GTGTTTTAGAGGAAGGTCCA+TGG - chr1.2:60141114-60141133 MS.gene055560:intron 45.0%
!! TCATATATATTATTAAAAAA+AGG + chr1.2:60140497-60140516 None:intergenic 5.0%
AAAAGACGCGACAGTACCAG+GGG + chr1.2:60141177-60141196 None:intergenic 50.0%
AAATATTCCTTACCGCGGCG+CGG + chr1.2:60139101-60139120 None:intergenic 50.0%
AACAAACACAACCCCGCTTG+GGG + chr1.2:60139228-60139247 None:intergenic 50.0%
AACCCCACGCGAATCATTAC+TGG + chr1.2:60139874-60139893 None:intergenic 50.0%
ACAAAAGACGCGACAGTACC+AGG + chr1.2:60141179-60141198 None:intergenic 50.0%
ACAGTGTTCCAAAACGGCAG+CGG + chr1.2:60140941-60140960 None:intergenic 50.0%
ACTTAGGTGTGTGGGATCCA+TGG + chr1.2:60140857-60140876 None:intergenic 50.0%
AGAACACAATCCACACGCCT+GGG + chr1.2:60139188-60139207 None:intergenic 50.0%
AGCAGGGAAAACAAGGGGAA+TGG + chr1.2:60140822-60140841 None:intergenic 50.0%
AGGGTGGCACTAGAAACCTT+AGG + chr1.2:60140599-60140618 None:intergenic 50.0%
CAAAAGACGCGACAGTACCA+GGG + chr1.2:60141178-60141197 None:intergenic 50.0%
CAACAAACACAACCCCGCTT+GGG + chr1.2:60139229-60139248 None:intergenic 50.0%
CAGAGACAGACGCAAGACTA+AGG + chr1.2:60140782-60140801 None:intergenic 50.0%
CAGGTTCGGATGCTAGGTTT+AGG + chr1.2:60140915-60140934 None:intergenic 50.0%
CATGGAATCGGTGAAACAGC+AGG + chr1.2:60140839-60140858 None:intergenic 50.0%
CCAAATGCAAGAACTGTCGG+CGG - chr1.2:60138984-60139003 MS.gene055560:CDS 50.0%
CCCACACACCTAAGTCTTGA+TGG - chr1.2:60140862-60140881 MS.gene055560:intron 50.0%
CCGACAGTTCTTGCATTTGG+AGG + chr1.2:60138984-60139003 None:intergenic 50.0%
CCTAACGTCGGTCAAGGTAT+AGG - chr1.2:60141260-60141279 MS.gene055560:intron 50.0%
CCTATACCTTGACCGACGTT+AGG + chr1.2:60141263-60141282 None:intergenic 50.0%
GAAAACAAGGGGAATGGCTG+TGG + chr1.2:60140816-60140835 None:intergenic 50.0%
GCACTAGAAACCTTAGGAGG+TGG + chr1.2:60140593-60140612 None:intergenic 50.0%
GCTACAGATGCTGCTGATAC+AGG - chr1.2:60141652-60141671 MS.gene055560:intron 50.0%
GGTCTTACCTTGTCAGAGGA+GGG - chr1.2:60140883-60140902 MS.gene055560:intron 50.0%
GTACCAATGCATTGTTGGGC+AGG + chr1.2:60141563-60141582 None:intergenic 50.0%
GTGCATGGAAGCCAGACAAA+CGG - chr1.2:60141024-60141043 MS.gene055560:intron 50.0%
GTGGCACTAGAAACCTTAGG+AGG + chr1.2:60140596-60140615 None:intergenic 50.0%
GTGTGTGGGATCCATGGAAT+CGG + chr1.2:60140851-60140870 None:intergenic 50.0%
GTTCCATTGAAACCCCAAGC+GGG - chr1.2:60139213-60139232 MS.gene055560:CDS 50.0%
TAAATCCACTGTCGATGCCC+AGG - chr1.2:60139168-60139187 MS.gene055560:CDS 50.0%
TAGAACACAATCCACACGCC+TGG + chr1.2:60139189-60139208 None:intergenic 50.0%
TCGTTGTTGCAGGGAGTTGA+TGG - chr1.2:60140287-60140306 MS.gene055560:intron 50.0%
TGCATGGAAGCCAGACAAAC+GGG - chr1.2:60141025-60141044 MS.gene055560:intron 50.0%
TGCTTGCAAAGTGCACCTTC+TGG - chr1.2:60141795-60141814 MS.gene055560:intron 50.0%
TGGCGTGTTCGTGCTAGTAA+TGG - chr1.2:60141389-60141408 MS.gene055560:intron 50.0%
TGGTTTCGGAAACGTGTTGG+TGG - chr1.2:60139027-60139046 MS.gene055560:CDS 50.0%
TTCCATTGAAACCCCAAGCG+GGG - chr1.2:60139214-60139233 MS.gene055560:CDS 50.0%
TTCCTCCTCCACAGGAACTT+CGG - chr1.2:60141819-60141838 MS.gene055560:intron 50.0%
TTCTAGTGCCACCCTCCTTT+GGG - chr1.2:60140604-60140623 MS.gene055560:intron 50.0%
TTGTTGGTACGCAGCTGATG+TGG - chr1.2:60139243-60139262 MS.gene055560:CDS 50.0%
! ATGGCTCGGATCTGGAGAAA+AGG - chr1.2:60141952-60141971 MS.gene055560:CDS 50.0%
! CGTAAGCTTTTCCGTGATGG+CGG - chr1.2:60139953-60139972 MS.gene055560:intron 50.0%
! GGTGTTGTCTTGACTCACGA+TGG - chr1.2:60139764-60139783 MS.gene055560:CDS 50.0%
! GGTTTCGGAAACGTGTTGGT+GGG - chr1.2:60139028-60139047 MS.gene055560:CDS 50.0%
! TGAGGAAAATGGCTCGGATC+TGG - chr1.2:60141944-60141963 MS.gene055560:CDS 50.0%
! TGGTCTTACCTTGTCAGAGG+AGG - chr1.2:60140882-60140901 MS.gene055560:intron 50.0%
! TTTCTAGTGCCACCCTCCTT+TGG - chr1.2:60140603-60140622 MS.gene055560:intron 50.0%
!! CAGGTTCATGGGCTACCTTT+TGG - chr1.2:60141227-60141246 MS.gene055560:intron 50.0%
!! CGTCGTGGTTTCACTGGTTT+CGG - chr1.2:60139838-60139857 MS.gene055560:CDS 50.0%
!! CTGCTGTTTCACCGATTCCA+TGG - chr1.2:60140837-60140856 MS.gene055560:intron 50.0%
!! CTTAGTCTTGCGTCTGTCTC+TGG - chr1.2:60140780-60140799 MS.gene055560:intron 50.0%
!! GCCCGTTTGAGTTGTTGACT+GGG - chr1.2:60140435-60140454 MS.gene055560:intron 50.0%
!! TCATGGCAGTGAGTTGGTTC+TGG + chr1.2:60141714-60141733 None:intergenic 50.0%
!! TGCCCGTTTGAGTTGTTGAC+TGG - chr1.2:60140434-60140453 MS.gene055560:intron 50.0%
!!! GCTGCTCGTGTTTTAGAGGA+AGG - chr1.2:60141107-60141126 MS.gene055560:intron 50.0%
AACCCCGCTTGGGGTTTCAA+TGG + chr1.2:60139219-60139238 None:intergenic 55.0%
ATATTGGTCCTCGTCAGCGG+CGG - chr1.2:60139743-60139762 MS.gene055560:CDS 55.0%
ATCGAGCCTAACGTCGGTCA+AGG - chr1.2:60141254-60141273 MS.gene055560:intron 55.0%
CAGCTCCGGACACACTTTGT+CGG + chr1.2:60141489-60141508 None:intergenic 55.0%
CAGGGAAGCCGAGCACTAAA+GGG + chr1.2:60141867-60141886 None:intergenic 55.0%
CAGTCACAAACGGACCAGCA+GGG + chr1.2:60141885-60141904 None:intergenic 55.0%
CCAACAAACACAACCCCGCT+TGG + chr1.2:60139230-60139249 None:intergenic 55.0%
CCAAGCGGGGTTGTGTTTGT+TGG - chr1.2:60139227-60139246 MS.gene055560:CDS 55.0%
CCATCTTCGCGCCTGTGTTA+CGG - chr1.2:60139063-60139082 MS.gene055560:CDS 55.0%
CCGCCGACAGTTCTTGCATT+TGG + chr1.2:60138987-60139006 None:intergenic 55.0%
CCTAGGGTTTCCACCTCCTA+AGG - chr1.2:60140580-60140599 MS.gene055560:intron 55.0%
CCTTAGGAGGTGGAAACCCT+AGG + chr1.2:60140583-60140602 None:intergenic 55.0%
CGACAGTACCAGGGGAGATA+CGG + chr1.2:60141169-60141188 None:intergenic 55.0%
CGGAGCTGAGGAAAATGGCT+CGG - chr1.2:60141938-60141957 MS.gene055560:CDS 55.0%
GGAAGATCCAGCCCAAGATG+CGG + chr1.2:60140636-60140655 None:intergenic 55.0%
GGGGAATGGCTGTGGAAACA+AGG + chr1.2:60140808-60140827 None:intergenic 55.0%
GGGGTTCGTTAGGCTCAAGA+GGG - chr1.2:60139888-60139907 MS.gene055560:CDS 55.0%
GGTTAGACCCTCCTCTGACA+AGG + chr1.2:60140893-60140912 None:intergenic 55.0%
GTGAGCGAATGTCTCGTGCA+TGG - chr1.2:60141009-60141028 MS.gene055560:intron 55.0%
TAACACAGGCGCGAAGATGG+TGG + chr1.2:60139063-60139082 None:intergenic 55.0%
TCAGTCACAAACGGACCAGC+AGG + chr1.2:60141886-60141905 None:intergenic 55.0%
TCCAAAACGGCAGCGGTTTC+AGG + chr1.2:60140934-60140953 None:intergenic 55.0%
TGATTCGCGTGGGGTTCGTT+AGG - chr1.2:60139878-60139897 MS.gene055560:CDS 55.0%
TGCATTTGGAGGTGGTACGG+AGG + chr1.2:60138973-60138992 None:intergenic 55.0%
TGGGGTTCGTTAGGCTCAAG+AGG - chr1.2:60139887-60139906 MS.gene055560:CDS 55.0%
! AGGAAAATGGCTCGGAGCTG+AGG - chr1.2:60141926-60141945 MS.gene055560:CDS 55.0%
! GCACTGCATTTTGGGCAGCA+AGG + chr1.2:60141747-60141766 None:intergenic 55.0%
! TCGGAAACGTGTTGGTGGGT+GGG - chr1.2:60139032-60139051 MS.gene055560:CDS 55.0%
! TGAGTATTTTCACCGCGCCG+CGG - chr1.2:60139086-60139105 MS.gene055560:CDS 55.0%
! TGGCTCGGAGCTGAGGAAAA+TGG - chr1.2:60141933-60141952 MS.gene055560:CDS 55.0%
! TTCGGAAACGTGTTGGTGGG+TGG - chr1.2:60139031-60139050 MS.gene055560:CDS 55.0%
!! AACGGCAGCGGTTTCAGGTT+CGG + chr1.2:60140929-60140948 None:intergenic 55.0%
!! ACCTGAAACCGCTGCCGTTT+TGG - chr1.2:60140930-60140949 MS.gene055560:intron 55.0%
!! ATTTTGGCGCGGCACTGTTG+GGG + chr1.2:60141602-60141621 None:intergenic 55.0%
!! CGGTTTCAGGTTCGGATGCT+AGG + chr1.2:60140921-60140940 None:intergenic 55.0%
!! GATTTTGGCGCGGCACTGTT+GGG + chr1.2:60141603-60141622 None:intergenic 55.0%
!! TGATTTTGGCGCGGCACTGT+TGG + chr1.2:60141604-60141623 None:intergenic 55.0%
AACTGTCGGCGGCTTTCCGA+TGG - chr1.2:60138995-60139014 MS.gene055560:CDS 60.0%
AAGATGCGGCAGCAGCCCAA+AGG + chr1.2:60140622-60140641 None:intergenic 60.0%
AGAGGCCGAAGTTCCTGTGG+AGG + chr1.2:60141827-60141846 None:intergenic 60.0%
CATCTGTAGCTCGGCCAGCA+GGG + chr1.2:60141642-60141661 None:intergenic 60.0%
CATGATGCTGCTGTCCCTGC+TGG - chr1.2:60141625-60141644 MS.gene055560:intron 60.0%
CCAGGTCGCCCTTTAGTGCT+CGG - chr1.2:60141856-60141875 MS.gene055560:intron 60.0%
CCGTAACACAGGCGCGAAGA+TGG + chr1.2:60139066-60139085 None:intergenic 60.0%
CTGTGGAGGAGGAAGCCAGA+AGG + chr1.2:60141813-60141832 None:intergenic 60.0%
GCAGGGAAGCCGAGCACTAA+AGG + chr1.2:60141868-60141887 None:intergenic 60.0%
GCGGCACTGTTGGGGGAATA+GGG + chr1.2:60141594-60141613 None:intergenic 60.0%
GCTAGAGGCCGAAGTTCCTG+TGG + chr1.2:60141830-60141849 None:intergenic 60.0%
GTCATGGACCGTATCTCCCC+TGG - chr1.2:60141158-60141177 MS.gene055560:intron 60.0%
TTAGTGCTCGGCTTCCCTGC+TGG - chr1.2:60141868-60141887 MS.gene055560:intron 60.0%
TTGGGCTGCTGCCGCATCTT+GGG - chr1.2:60140622-60140641 MS.gene055560:intron 60.0%
TTTGGGCTGCTGCCGCATCT+TGG - chr1.2:60140621-60140640 MS.gene055560:intron 60.0%
! ATTTTCACCGCGCCGCGGTA+AGG - chr1.2:60139091-60139110 MS.gene055560:CDS 60.0%
! TTTTGGCGCGGCACTGTTGG+GGG + chr1.2:60141601-60141620 None:intergenic 60.0%
!! CTTCTGGCTTCCTCCTCCAC+AGG - chr1.2:60141811-60141830 MS.gene055560:intron 60.0%
ACTGTCGATGCCCAGGCGTG+TGG - chr1.2:60139175-60139194 MS.gene055560:CDS 65.0%
AGACAACACCGCCGCTGACG+AGG + chr1.2:60139754-60139773 None:intergenic 65.0%
ATGCGGCAGCAGCCCAAAGG+AGG + chr1.2:60140619-60140638 None:intergenic 65.0%
CCGAGCACTAAAGGGCGACC+TGG + chr1.2:60141859-60141878 None:intergenic 65.0%
CGCGGCACTGTTGGGGGAAT+AGG + chr1.2:60141595-60141614 None:intergenic 65.0%
GCATCTGTAGCTCGGCCAGC+AGG + chr1.2:60141643-60141662 None:intergenic 65.0%
GCGACCTGGCAGCAAGCTAG+AGG + chr1.2:60141845-60141864 None:intergenic 65.0%
GGCCGAAGTTCCTGTGGAGG+AGG + chr1.2:60141824-60141843 None:intergenic 65.0%
TGCGGCAGCAGCCCAAAGGA+GGG + chr1.2:60140618-60140637 None:intergenic 65.0%
!! ACACGCCTGGGCATCGACAG+TGG + chr1.2:60139176-60139195 None:intergenic 65.0%
!! TCGGCCTCTAGCTTGCTGCC+AGG - chr1.2:60141838-60141857 MS.gene055560:intron 65.0%
GCTGCTGCCGCATCTTGGGC+TGG - chr1.2:60140626-60140645 MS.gene055560:intron 70.0%
GGCAGCAGCCCAAAGGAGGG+TGG + chr1.2:60140615-60140634 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 60138960 60142041 60138960 ID=MS.gene055560
chr1.2 mRNA 60138960 60142041 60138960 ID=MS.gene055560.t1;Parent=MS.gene055560
chr1.2 exon 60141917 60142041 60141917 ID=MS.gene055560.t1.exon1;Parent=MS.gene055560.t1
chr1.2 CDS 60141917 60142041 60141917 ID=cds.MS.gene055560.t1;Parent=MS.gene055560.t1
chr1.2 exon 60141753 60141811 60141753 ID=MS.gene055560.t1.exon2;Parent=MS.gene055560.t1
chr1.2 CDS 60141753 60141811 60141753 ID=cds.MS.gene055560.t1;Parent=MS.gene055560.t1
chr1.2 exon 60140344 60140416 60140344 ID=MS.gene055560.t1.exon3;Parent=MS.gene055560.t1
chr1.2 CDS 60140344 60140416 60140344 ID=cds.MS.gene055560.t1;Parent=MS.gene055560.t1
chr1.2 exon 60140034 60140182 60140034 ID=MS.gene055560.t1.exon4;Parent=MS.gene055560.t1
chr1.2 CDS 60140034 60140182 60140034 ID=cds.MS.gene055560.t1;Parent=MS.gene055560.t1
chr1.2 exon 60139471 60139962 60139471 ID=MS.gene055560.t1.exon5;Parent=MS.gene055560.t1
chr1.2 CDS 60139471 60139962 60139471 ID=cds.MS.gene055560.t1;Parent=MS.gene055560.t1
chr1.2 exon 60138960 60139393 60138960 ID=MS.gene055560.t1.exon6;Parent=MS.gene055560.t1
chr1.2 CDS 60138960 60139393 60138960 ID=cds.MS.gene055560.t1;Parent=MS.gene055560.t1
Gene Sequence

>MS.gene055560

ATGAGTCTCTCCTCCGTACCACCTCCAAATGCAAGAACTGTCGGCGGCTTTCCGATGGTTTTGCGTATGGTTTCGGAAACGTGTTGGTGGGTGGGTTTAACCACCATCTTCGCGCCTGTGTTACGGTGAGTATTTTCACCGCGCCGCGGTAAGGAATATTTCTTGATCTTTATCTCTAATCAGGAACATATTTCTTGTTTCTTTTGATTAAATCCACTGTCGATGCCCAGGCGTGTGGATTGTGTTCTATCTAGTTCCATTGAAACCCCAAGCGGGGTTGTGTTTGTTGGTACGCAGCTGATGTGGATCCAATAAGGATTCACCATGCAAGGATCTTTGACCTAAGTGTAATTTTCTTGAATTGAGATAGAAAATGAAGGAAAATGATAGAAAATCTAAGAAAATTGACCAAACTATGAATAGAAAGAAAATATACAAATGGAATTAGATGAGAAGTGGGAAGAACGATCGCCACATTCAAGATGAACGATAAGATCGAATTGCGGATCCGCCACAAGAATAAGATGCTCTTGATAAGGATCTAGATTTGGTTCATCCAAGAACTTATAAGAGCAATTCTAACTCTCCCTTCAATCAAAAATTGAAAATATCAAATTGTATTCACCTCCTTCAAAATGATAACATGATTGTTATTTATACCTACTCATTGGCCATCACATATAAGGCCAAATAAGGAACTAGAAAAACAAGGAGCATTATACAACTCCAAAATAAAAGTAATACTAAACACTATTACAATTAAAATTCACTAAAGAAAATAACATATTGGTCCTCGTCAGCGGCGGTGTTGTCTTGACTCACGATGGTGTACAAAAAGGTCCGTTGGTTTGTTCGTTTTTAGGTTCCGTTTTAAAACTCGTCGTGGTTTCACTGGTTTCGGTTTTTCAGATCCAGTAATGATTCGCGTGGGGTTCGTTAGGCTCAAGAGGGCTTTTAATGCTTGCTGTGATTTATCCAGGGGCTTATATGGTTCGTAAGCTTTTCCGTGATGGCGGTAGTTCATACACCATACATATTAAAAAATAAGTTTGATTTATTCTGGCTTGTTTCTGGTTCTTTTACACACCTTTTCCTTTGGTGAAATGATGAAATTCAATCTTGTGTCTCGGCTGTGCTTGTATGATAGCTTGTTGTGAGGCAGAAATGGCTGATTAAGCTTATGATCAGTTGGTGTTTGTGGATATGCTAATTACTGTGTTGGCGGTCGAATCCACCCCTACTTTCAAGCATTTGTCCGTGGTTATCCCAACCATCTATTGATTGACATGAGACTGTATGGACTCAAAAGTGTCGTCAATGCTAGTTGTCGTTGTTGCAGGGAGTTGATGGTACGTGAACCGATTTTGTGTTGACAATCGATTCATTCGCCAAACTTTGGACCCGCGTTTAATGTTAGATTTGTTTAGGGTTGGATCCACTTTGTGGATTTTTTATTTTTATTTATTTTTTGTTTTGCCCGTTTGAGTTGTTGACTGGGTCAGGTTTTATGTCCCCCAGTTTTTATGTAATTTTTCCTTTTTTTAATAATATATATGAGCAATTGGCAACCGATTAGAGTAGTGTACCAACATAAAAACAAATTGTCTCTATATATGGTCTCCTAGGGTTTCCACCTCCTAAGGTTTCTAGTGCCACCCTCCTTTGGGCTGCTGCCGCATCTTGGGCTGGATCTTCCTTGTGAGAAGTTGCATCTCATCTGATCCATGATCTAGATGTTTCTATTCCTGCCTATTTATTCATCTGGTTTTCACATACTTGTGATTCATCAAAACCCTAGTTCCTGTAAACCGCTTTCTTCCCTTAGTCTTGCGTCTGTCTCTGGTTCCTTGTTTCCACAGCCATTCCCCTTGTTTTCCCTGCTGTTTCACCGATTCCATGGATCCCACACACCTAAGTCTTGATGGTCTTACCTTGTCAGAGGAGGGTCTAACCCTAAACCTAGCATCCGAACCTGAAACCGCTGCCGTTTTGGAACACTGTCTGATTGGTAGGTTTTGGCTGATCGTGAAATCCAGATTGCCTATTTCAGTGAGCGAATGTCTCGTGCATGGAAGCCAGACAAACGGGTTATGATCACCAAATCTGTGGATGATCGATATCTCTTCCAGTTTCACTATAAGGTAGATGCTGCTCGTGTTTTAGAGGAAGGTCCATGGCTTTACGACAATTTCCATATTGTCATGGACCGTATCTCCCCTGGTACTGTCGCGTCTTTTGTTCCCTTGAATCATATTGATTTTTGGGTTCAGGTTCATGGGCTACCTTTTGGTTTTATCGAGCCTAACGTCGGTCAAGGTATAGGAAGTTTTCTAGGTACATTTAGGGCTTATGATGTCCGTAATTCTATCCATAGTTCCTATATGAGAATCAAAGTGTCAATTGATGTTACTGTCCCACTTAAGAAAGAGTGGCGTGTTCGTGCTAGTAATGGTGAATTTGTGACTGTTAACTTTAAGTATGAAAAACTCGGTGTTTTTTGTCACATGTGTGGAGTTATCGGACATACCGACAAAGTGTGTCCGGAGCTGTTCGAGTTAGAATCAGATGATGGTATTCGCAACTGGGGACCGTATCTAAAACCTGCCCAACAATGCATTGGTACTGCTGCAACCCTATTCCCCCAACAGTGCCGCGCCAAAATCAACATGATGCTGCTGTCCCTGCTGGCCGAGCTACAGATGCTGCTGATACAGGAAAATTGACAACTTTTAATGACCGTATGCTTGCTTTCCAGAACCAACTCACTGCCATGAAACAAGATGTCCTTGCTGCCCAAAATGCAGTGCATGCTAAAAAAGGTAACGGTACTAATTCTGCTTGCAAAGTGCACCTTCTGGCTTCCTCCTCCACAGGAACTTCGGCCTCTAGCTTGCTGCCAGGTCGCCCTTTAGTGCTCGGCTTCCCTGCTGGTCCGTTTGTGACTGAAAACAATGATGAAGTGTATGAGGAAAATGGCTCGGAGCTGAGGAAAATGGCTCGGATCTGGAGAAAAGGAAGCTTATGCTTGCCCTTCAGAATGGAGAACCATTTGATGCTGATGGGGCTTTGGGAAACAATGTAA
Protein sequence

>MS.gene055560.t1

MSLSSVPPPNARTVGGFPMVLRMVSETCWWVGLTTIFAPVLRRVDCVLSSSIETPSGVVFVGFPPPKVSSATLLWAAAASWAGSSFHSPCFPCCFTDSMDPTHLSLDGLTLSEEGLTLNLASEPETAAVLEHCLIDKRVMITKSVDDRYLFQFHYKVDAARVLEEGPWLYDNFHIVMDRISPGTVASFVPLNHIDFWVQVHGLPFGFIEPNVGQGIGSFLGTFRAYDVRNSIHSSYMRIKVSIDVTVPLKKEWRVRASNGEFVTVNFKYEKLGVFCHMCGVIGHTDKVCPELFELESDDVPRQNQHDAAVPAGRATDAADTGKLTTFNDRMLAFQNQLTAMKQDVLAAQNAVHAKKGNGTNSACKVHLLASSSTGTSASSLLPGRPLVLGFPAGPFVTENNDEVYEENGSELRKMARIWRKGSLCLPFRMENHLMLMGLWETM