AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39956


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39956.t1 MTR_3g053920 59.026 349 74 4 1 349 1 280 6.88e-128 374
MS.gene39956.t1 MTR_2g061500 84.496 129 20 0 1 129 1 129 1.10e-74 232
MS.gene39956.t1 MTR_4g103530 82.105 95 17 0 55 149 1 95 4.77e-51 172
MS.gene39956.t1 MTR_7g011710 69.412 85 26 0 55 139 1 85 5.10e-36 131
MS.gene39956.t1 MTR_6g033215 33.333 171 112 1 31 199 124 294 9.03e-31 121
MS.gene39956.t1 MTR_0010s0370 36.313 179 102 4 7 177 3 177 2.59e-29 114
MS.gene39956.t1 MTR_0010s0350 36.313 179 102 4 7 177 3 177 2.59e-29 114
MS.gene39956.t1 MTR_8g463110 55.208 96 43 0 403 498 194 289 3.65e-29 122
MS.gene39956.t1 MTR_8g463110 62.281 114 41 1 292 403 1 114 1.92e-28 119
MS.gene39956.t1 MTR_6g034215 47.863 117 58 1 385 498 177 293 5.09e-29 117
MS.gene39956.t1 MTR_4g020630 52.632 95 45 0 404 498 131 225 5.81e-27 114
MS.gene39956.t1 MTR_1g100687 41.935 93 54 0 404 496 133 225 7.73e-22 94.7
MS.gene39956.t1 MTR_3g044860 36.792 106 41 1 404 509 87 166 3.05e-16 79.7
MS.gene39956.t1 MTR_1g051330 36.170 94 59 1 403 496 349 441 2.57e-13 73.2
MS.gene39956.t1 MTR_0042s0130 34.375 96 63 0 404 499 234 329 3.03e-13 71.2
MS.gene39956.t1 MTR_1g036720 33.028 109 71 1 7 113 3 111 3.49e-13 66.2
MS.gene39956.t1 MTR_6g009010 40.299 67 40 0 399 465 197 263 1.31e-11 65.5
MS.gene39956.t1 MTR_3g024240 32.500 120 77 2 84 199 55 174 9.27e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39956.t1 AT2G17920 26.027 219 144 5 8 216 9 219 2.02e-17 83.6
MS.gene39956.t1 AT3G57587 28.873 142 97 2 77 216 80 219 9.69e-16 79.3
MS.gene39956.t1 AT2G41590 29.114 158 102 3 67 216 64 219 1.00e-15 79.3
MS.gene39956.t1 AT3G31430 27.273 209 144 4 11 215 107 311 3.65e-15 77.0
MS.gene39956.t1 AT5G36228 27.039 233 126 5 8 227 32 233 1.65e-14 75.5
MS.gene39956.t1 AT2G13450 27.174 184 128 4 35 215 38 218 2.24e-14 75.5
MS.gene39956.t1 AT5G25200 26.455 189 123 4 36 216 39 219 7.86e-14 73.6
MS.gene39956.t1 AT2G02103 26.984 189 122 4 36 216 39 219 8.13e-14 73.6
MS.gene39956.t1 AT5G18636 26.455 189 123 4 36 216 39 219 8.45e-14 73.6
MS.gene39956.t1 AT3G47920 28.873 142 97 2 77 216 9 148 2.01e-13 71.6
MS.gene39956.t1 AT4G02000 27.941 136 94 2 83 216 6 139 3.30e-12 68.2

Find 142 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACTCGGTTTCAAGGTTT+AGG 0.239735 1.4:+58623204 None:intergenic
GCAGCTTGAACCGGGGTTTA+AGG 0.252060 1.4:-58621204 MS.gene39956:CDS
CTGATGATGGTGTTAGAAAT+TGG 0.263857 1.4:-58622593 MS.gene39956:CDS
ATTTGCTGCTGATGGGGATA+TGG 0.268644 1.4:-58622100 MS.gene39956:CDS
ATTGAAGGATGTTGGATTTC+CGG 0.275936 1.4:+58622416 None:intergenic
CCTATCCCTTGACCTACTTT+AGG 0.278128 1.4:+58622855 None:intergenic
GTGATTCAAGGGCACAAAAC+TGG 0.287367 1.4:+58622926 None:intergenic
CAAGTCCATGGTCTTCCATT+TGG 0.307171 1.4:-58622888 MS.gene39956:CDS
CGACATGCGTTCGCTGAAAT+AGG 0.325418 1.4:+58623115 None:intergenic
GATATGGGAAACAATGTAAT+AGG 0.328449 1.4:-58622084 MS.gene39956:CDS
AGACTCGGTTTCAAGGTTTA+GGG 0.335047 1.4:+58623205 None:intergenic
TCATAGCAGTGAGTTGGTTC+TGG 0.337700 1.4:+58622376 None:intergenic
TGCTTGCAAAGTGCATCTTC+TGG 0.344153 1.4:-58622292 MS.gene39956:CDS
CGCCACCAGCAGCATTGGTT+TGG 0.349189 1.4:+58622481 None:intergenic
GCAGGTAGCCCGAGCACTAT+AGG 0.370103 1.4:+58622222 None:intergenic
TTCTTGCATGCCTTGTTCAT+TGG 0.374242 1.4:+58620809 None:intergenic
CCCACAAATCTTAACCTTGC+TGG 0.383915 1.4:-58623254 MS.gene39956:CDS
TGTCACAGGTGCGGCTTGCT+TGG 0.388808 1.4:-58622657 MS.gene39956:CDS
ATCCTTGAACACTGCTTGAT+AGG 0.396899 1.4:-58623170 MS.gene39956:CDS
ATCATTGTAATAAAATCAAA+AGG 0.397666 1.4:-58621088 MS.gene39956:CDS
AGGCGCAACACTGACAAGTA+TGG 0.397885 1.4:+58621277 None:intergenic
TTTAGCATATGCTGCATTCT+GGG 0.398491 1.4:+58622335 None:intergenic
CGCGGCACAGAGGCAGGGAT+GGG 0.398696 1.4:+58622504 None:intergenic
AAGACATGTGGGAGTGGAAT+AGG 0.405268 1.4:-58621112 MS.gene39956:CDS
GAATGCGTGGCAGCTTGAAC+CGG 0.405871 1.4:-58621213 MS.gene39956:CDS
GTTTGGCGCGGCACAGAGGC+AGG 0.413106 1.4:+58622498 None:intergenic
ACCAGCAAGGTTAAGATTTG+TGG 0.415806 1.4:+58623253 None:intergenic
TGATGATGGTGTTAGAAATT+GGG 0.422542 1.4:-58622592 MS.gene39956:CDS
CCAGACCGCCCTATAGTGCT+CGG 0.425872 1.4:-58622231 MS.gene39956:CDS
GCAGGTATATCGCAGCCAAC+AGG 0.430100 1.4:+58622447 None:intergenic
TCCCTTGACCTACTTTAGGT+TGG 0.431376 1.4:+58622859 None:intergenic
GACCTATCAAGCAGTGTTCA+AGG 0.434622 1.4:+58623168 None:intergenic
GCGAACGCATGTCGCGTGCC+TGG 0.435880 1.4:-58623106 MS.gene39956:CDS
AAGCCGGTTTCACACAAGAT+TGG 0.450238 1.4:-58622558 MS.gene39956:CDS
GTACCAATCTTGTGTGAAAC+CGG 0.451896 1.4:+58622555 None:intergenic
TCTTGTGTGAAACCGGCTTA+AGG 0.455891 1.4:+58622562 None:intergenic
GCGCGGCACAGAGGCAGGGA+TGG 0.458014 1.4:+58622503 None:intergenic
GGCGCAAATGCTGCTCCTGT+TGG 0.459054 1.4:-58622462 MS.gene39956:CDS
CTTCTGGCCTCTTCCTCTAC+AGG 0.461221 1.4:-58622276 MS.gene39956:CDS
CGGTTCCTTTGAAGAAAGAA+TGG 0.461408 1.4:-58622746 MS.gene39956:CDS
GTGCCTGGAAGCCAGTCAAA+AGG 0.461780 1.4:-58623091 MS.gene39956:CDS
CCAGCAAGGTTAAGATTTGT+GGG 0.465000 1.4:+58623254 None:intergenic
GTTAAGATTTGTGGGATCCA+TGG 0.466327 1.4:+58623262 None:intergenic
GTTCGCTGAAATAGGCAAAC+TGG 0.470508 1.4:+58623123 None:intergenic
GCGTCTCGTGTCCTTGATGA+AGG 0.476940 1.4:-58623008 MS.gene39956:CDS
GGATTTCCGGTACCAGCAGC+AGG 0.477987 1.4:+58622429 None:intergenic
TCAATCTCAAATGGAACAGC+AGG 0.478918 1.4:+58622204 None:intergenic
GTGCGGCTTGCTTGGTCATA+CGG 0.483738 1.4:-58622649 MS.gene39956:CDS
GCGGCACAGAGGCAGGGATG+GGG 0.485237 1.4:+58622505 None:intergenic
ACAAAACTGGGAACGACACC+AGG 0.487376 1.4:+58622939 None:intergenic
GGTTTCATCCAACCTAAAGT+AGG 0.488608 1.4:-58622867 MS.gene39956:CDS
CGAAGTACCTGTAGAGGAAG+AGG 0.488829 1.4:+58622269 None:intergenic
AATGCGTGGCAGCTTGAACC+GGG 0.489082 1.4:-58621212 MS.gene39956:CDS
CCTAAAGTAGGTCAAGGGAT+AGG 0.489538 1.4:-58622855 MS.gene39956:CDS
CCAGCAGCATTGGTTTGGCG+CGG 0.489542 1.4:+58622486 None:intergenic
ATGGTTCGGAATTGAAGAAA+AGG 0.493268 1.4:-58622155 MS.gene39956:CDS
TTTGCTGCTGATGGGGATAT+GGG 0.496695 1.4:-58622099 MS.gene39956:CDS
TCATACGGACAAGGTGTGTC+CGG 0.497073 1.4:-58622634 MS.gene39956:CDS
GGAGAACCATTTGCTGCTGA+TGG 0.498253 1.4:-58622108 MS.gene39956:CDS
CAGGTAGCCCGAGCACTATA+GGG 0.500656 1.4:+58622223 None:intergenic
CTAAAGTAGGTCAAGGGATA+GGG 0.500860 1.4:-58622854 MS.gene39956:CDS
TGGTCTGACTTTGTCTGAAG+AGG 0.501622 1.4:-58623234 MS.gene39956:CDS
CCGAGCACTATAGGGCGGTC+TGG 0.505204 1.4:+58622231 None:intergenic
CTTGTTTCATAGCAGTGAGT+TGG 0.508037 1.4:+58622370 None:intergenic
GCAAGGAAATGCAAGACATT+CGG 0.509824 1.4:-58621049 MS.gene39956:CDS
CGCCAAACCAATGCTGCTGG+TGG 0.513803 1.4:-58622483 MS.gene39956:CDS
TTAGGTTGGATGAAACCAAA+TGG 0.515115 1.4:+58622873 None:intergenic
TCCGCACATAAAGATAACTT+TGG 0.516698 1.4:+58621134 None:intergenic
TGATTCAAGGGCACAAAACT+GGG 0.517706 1.4:+58622927 None:intergenic
TTAAGATTTGTGGGATCCAT+GGG 0.519569 1.4:+58623263 None:intergenic
ACACGCCATTCTTTCTTCAA+AGG 0.520389 1.4:+58622741 None:intergenic
ATTTGCGCCACCAGCAGCAT+TGG 0.521878 1.4:+58622476 None:intergenic
CCGCGCCAAACCAATGCTGC+TGG 0.521917 1.4:-58622486 MS.gene39956:CDS
GCGGTCTGGCAGCATATTAG+AGG 0.524222 1.4:+58622245 None:intergenic
ATACGATCATTGAAGGATGT+TGG 0.525082 1.4:+58622408 None:intergenic
CGTTTATGAACTTGAGGCCA+AGG 0.529381 1.4:+58621251 None:intergenic
AGCAAGCATACGATCATTGA+AGG 0.529590 1.4:+58622401 None:intergenic
AGGAGCTAGTTACTAACTCA+TGG 0.534186 1.4:-58621184 MS.gene39956:CDS
TATGAGTTGGACTCTGATGA+TGG 0.535904 1.4:-58622606 MS.gene39956:CDS
AGTGCATGAGGACAATGGTT+CGG 0.537247 1.4:-58622169 MS.gene39956:CDS
ATCCAACCTAAAGTAGGTCA+AGG 0.540339 1.4:-58622861 MS.gene39956:CDS
ATATCCCCATCAGCAGCAAA+TGG 0.542146 1.4:+58622102 None:intergenic
GGGGTCTTGAAGCCAACGAT+TGG 0.542402 1.4:+58622524 None:intergenic
GATATACCTGCTGCTGGTAC+CGG 0.542864 1.4:-58622435 MS.gene39956:CDS
CGCATGTTCAACCTTCAGAA+TGG 0.543074 1.4:-58622129 MS.gene39956:CDS
CTTTATGTGCGGAAGACATG+TGG 0.545978 1.4:-58621124 MS.gene39956:CDS
TTGGGGAGCTGACCTTAAGC+CGG 0.550680 1.4:-58622574 MS.gene39956:CDS
GCATAAGAGTGCTTGCTGAA+TGG 0.552056 1.4:+58621156 None:intergenic
TGAACTTGAGGCCAAGGTGT+AGG 0.552355 1.4:+58621257 None:intergenic
GGTCTGACTTTGTCTGAAGA+GGG 0.553936 1.4:-58623233 MS.gene39956:CDS
AGCCACTCTGAGGCGCATAT+AGG 0.554985 1.4:+58622779 None:intergenic
GAGAACCATTTGCTGCTGAT+GGG 0.561514 1.4:-58622107 MS.gene39956:CDS
AGAGGCCGAAGTACCTGTAG+AGG 0.562749 1.4:+58622263 None:intergenic
ATGCGTGGCAGCTTGAACCG+GGG 0.563660 1.4:-58621211 MS.gene39956:CDS
TGCCTGGAAGCCAGTCAAAA+GGG 0.564305 1.4:-58623090 MS.gene39956:CDS
CAAATGGTTCTCCATTCTGA+AGG 0.565773 1.4:+58622118 None:intergenic
CAGACCGCCCTATAGTGCTC+GGG 0.567187 1.4:-58622230 MS.gene39956:CDS
GTAACTAGCTCCTTAAACCC+CGG 0.569868 1.4:+58621194 None:intergenic
GGCGCAACACTGACAAGTAT+GGG 0.569959 1.4:+58621278 None:intergenic
GTACTGCTGCAACCAATCGT+TGG 0.571005 1.4:-58622536 MS.gene39956:CDS
TCAGTGTTGCGCCTACACCT+TGG 0.572430 1.4:-58621268 MS.gene39956:CDS
CTTGCTTGGTCATACGGACA+AGG 0.574893 1.4:-58622643 MS.gene39956:CDS
CAGAGTGGCTATTGATGTCA+CGG 0.576319 1.4:-58622766 MS.gene39956:CDS
AAATGTCGTTTATGAACTTG+AGG 0.576587 1.4:+58621245 None:intergenic
TTTGGCGCGGCACAGAGGCA+GGG 0.578514 1.4:+58622499 None:intergenic
GAGTCCAACTCATACAGCTC+CGG 0.581105 1.4:+58622615 None:intergenic
CTCTTCCTCTACAGGTACTT+CGG 0.581706 1.4:-58622268 MS.gene39956:CDS
ATGGGATAGTGATCAGAAGA+AGG 0.585857 1.4:+58621296 None:intergenic
GTGCGGAAGACATGTGGGAG+TGG 0.589143 1.4:-58621118 MS.gene39956:CDS
GCTAGTTACTAACTCATGGC+AGG 0.590601 1.4:-58621180 MS.gene39956:CDS
TCATTGTAATAAAATCAAAA+GGG 0.591564 1.4:-58621087 MS.gene39956:CDS
GGCTGCGATATACCTGCTGC+TGG 0.599666 1.4:-58622441 MS.gene39956:CDS
ACAACCACGGACCTTCATCA+AGG 0.599966 1.4:+58622997 None:intergenic
GCCAAAGTTATCTTTATGTG+CGG 0.604967 1.4:-58621135 MS.gene39956:CDS
TGGCGTGTTCGTGCTAGTAA+CGG 0.608633 1.4:-58622726 MS.gene39956:CDS
TCCAACCTAAAGTAGGTCAA+GGG 0.620577 1.4:-58622860 MS.gene39956:CDS
GTTACGATCACAAAGTCTGT+TGG 0.630755 1.4:-58623068 MS.gene39956:CDS
TTTATGTGCGGAAGACATGT+GGG 0.631802 1.4:-58621123 MS.gene39956:CDS
CACGAGACGCATCCACCTTG+TGG 0.636445 1.4:+58623021 None:intergenic
GTGTCCGGAGCTGTATGAGT+TGG 0.640068 1.4:-58622619 MS.gene39956:CDS
TGCTATTGTTGAGACTCTTG+TGG 0.642175 1.4:-58621321 MS.gene39956:intron
ATTGGTTTGGCGCGGCACAG+AGG 0.646767 1.4:+58622494 None:intergenic
TGAAACCAAATGGAAGACCA+TGG 0.650045 1.4:+58622883 None:intergenic
GATGATGGTGTTAGAAATTG+GGG 0.652352 1.4:-58622591 MS.gene39956:CDS
GTTGTTTCAATTTCACCACA+AGG 0.656998 1.4:-58623036 MS.gene39956:CDS
AATAAAGTTACCAATGAACA+AGG 0.657390 1.4:-58620819 MS.gene39956:CDS
AAATAACGAGGAAGTGCATG+AGG 0.657967 1.4:-58622181 MS.gene39956:CDS
GAGGAAGTGCATGAGGACAA+TGG 0.662059 1.4:-58622174 MS.gene39956:CDS
GGACATCGAAGATTGTCGCA+AGG 0.662937 1.4:-58621066 MS.gene39956:CDS
AGAACCATTTGCTGCTGATG+GGG 0.663812 1.4:-58622106 MS.gene39956:CDS
ACTGGATTTCACGATCAGCA+AGG 0.672093 1.4:+58623141 None:intergenic
GTTATGGATCGAATCAACCC+TGG 0.674896 1.4:-58622957 MS.gene39956:CDS
TGAAAATTATCATACAACCA+CGG 0.679439 1.4:+58622984 None:intergenic
GGTACTCTCAAGGCATACGA+TGG 0.681865 1.4:-58622822 MS.gene39956:CDS
CAGACAAAGTCAGACCAGCA+AGG 0.687776 1.4:+58623240 None:intergenic
GTTTCAATTTCACCACAAGG+TGG 0.694224 1.4:-58623033 MS.gene39956:CDS
ATTTGAGATTGAAAATAACG+AGG 0.703259 1.4:-58622193 MS.gene39956:CDS
GTGTCCTTGATGAAGGTCCG+TGG 0.705004 1.4:-58623001 MS.gene39956:CDS
TGCCTATATGCGCCTCAGAG+TGG 0.706841 1.4:-58622781 MS.gene39956:CDS
GTAGCCCGAGCACTATAGGG+CGG 0.715033 1.4:+58622226 None:intergenic
TGACATCAATAGCCACTCTG+AGG 0.720871 1.4:+58622769 None:intergenic
CAAAACTGGGAACGACACCA+GGG 0.748480 1.4:+58622940 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTGTAATAAAATCAAA+AGG - chr1.4:58622977-58622996 MS.gene39956:CDS 15.0%
!! TCATTGTAATAAAATCAAAA+GGG - chr1.4:58622978-58622997 MS.gene39956:CDS 15.0%
!!! CATTTTAAATATGAGAAATT+GGG - chr1.4:58621378-58621397 MS.gene39956:intron 15.0%
!!! TCATTTTAAATATGAGAAAT+TGG - chr1.4:58621377-58621396 MS.gene39956:intron 15.0%
!!! TGATAATTTTCATATTGTTA+TGG - chr1.4:58621092-58621111 MS.gene39956:CDS 15.0%
!! AGTATTATTTACAAGTTCAA+CGG + chr1.4:58622380-58622399 None:intergenic 20.0%
! AACTTCAAAAAAGAATGCAA+CGG - chr1.4:58623076-58623095 MS.gene39956:CDS 25.0%
! AATAAAGTTACCAATGAACA+AGG - chr1.4:58623246-58623265 MS.gene39956:CDS 25.0%
! GAACTTGTAAATAATACTCT+TGG - chr1.4:58622382-58622401 MS.gene39956:CDS 25.0%
! TAAATAATACTCTTGGCATT+TGG - chr1.4:58622389-58622408 MS.gene39956:CDS 25.0%
! TATACTTGGTTTAAAAGTCT+TGG - chr1.4:58622649-58622668 MS.gene39956:CDS 25.0%
! TGAAAATTATCATACAACCA+CGG + chr1.4:58621084-58621103 None:intergenic 25.0%
!! AAGACTTTTAAACCAAGTAT+AGG + chr1.4:58622650-58622669 None:intergenic 25.0%
!! AGACTTTTAAACCAAGTATA+GGG + chr1.4:58622649-58622668 None:intergenic 25.0%
!! ATTTGAGATTGAAAATAACG+AGG - chr1.4:58621872-58621891 MS.gene39956:intron 25.0%
!!! TCGTTATTTTCAATCTCAAA+TGG + chr1.4:58621873-58621892 None:intergenic 25.0%
AAAACTCATTGGTACAAAGA+TGG - chr1.4:58623138-58623157 MS.gene39956:CDS 30.0%
AATGCAGCATATGCTAAAAA+AGG - chr1.4:58621735-58621754 MS.gene39956:intron 30.0%
ACATCTTGCTCATCAAAAAA+AGG + chr1.4:58622056-58622075 None:intergenic 30.0%
ATAGGAACAAATGTTAGTCA+TGG - chr1.4:58621999-58622018 MS.gene39956:intron 30.0%
CAAAAATCGATGTGATTCAA+GGG + chr1.4:58621153-58621172 None:intergenic 30.0%
GATATGGGAAACAATGTAAT+AGG - chr1.4:58621981-58622000 MS.gene39956:intron 30.0%
GCATATGCTAAAAAAGGTAA+CGG - chr1.4:58621741-58621760 MS.gene39956:intron 30.0%
TACAAAGTTCTTTCATGCTT+CGG - chr1.4:58623170-58623189 MS.gene39956:CDS 30.0%
TAGGAACAAATGTTAGTCAT+GGG - chr1.4:58622000-58622019 MS.gene39956:intron 30.0%
TCACTAAGGAATAAAAGATC+CGG + chr1.4:58622199-58622218 None:intergenic 30.0%
! AAATGTCGTTTATGAACTTG+AGG + chr1.4:58622823-58622842 None:intergenic 30.0%
! TTTTGATGAGCAAGATGTAA+TGG - chr1.4:58622058-58622077 MS.gene39956:intron 30.0%
!! TGATGATGGTGTTAGAAATT+GGG - chr1.4:58621473-58621492 MS.gene39956:intron 30.0%
AAATCACCAAAGATACACCA+CGG + chr1.4:58622505-58622524 None:intergenic 35.0%
AGAGTCTCAACAATAGCATT+TGG + chr1.4:58622742-58622761 None:intergenic 35.0%
AGGAACAAATGTTAGTCATG+GGG - chr1.4:58622001-58622020 MS.gene39956:intron 35.0%
ATACGATCATTGAAGGATGT+TGG + chr1.4:58621660-58621679 None:intergenic 35.0%
ATTAGGATAGCCATAATAGC+CGG + chr1.4:58622422-58622441 None:intergenic 35.0%
ATTGAAGGATGTTGGATTTC+CGG + chr1.4:58621652-58621671 None:intergenic 35.0%
CATCATCAAGAGAAGTTATG+CGG + chr1.4:58623218-58623237 None:intergenic 35.0%
CCAAAAATCGATGTGATTCA+AGG + chr1.4:58621154-58621173 None:intergenic 35.0%
GCCAAAGTTATCTTTATGTG+CGG - chr1.4:58622930-58622949 MS.gene39956:CDS 35.0%
GTATAGGGATATCCTTCAAT+CGG + chr1.4:58622634-58622653 None:intergenic 35.0%
TATAGGGATATCCTTCAATC+GGG + chr1.4:58622633-58622652 None:intergenic 35.0%
TATTATGGCTATCCTAATGG+AGG - chr1.4:58622424-58622443 MS.gene39956:CDS 35.0%
TCCGCACATAAAGATAACTT+TGG + chr1.4:58622934-58622953 None:intergenic 35.0%
TTGAAGGATATCCCTATACT+TGG - chr1.4:58622635-58622654 MS.gene39956:CDS 35.0%
TTTAGCATATGCTGCATTCT+GGG + chr1.4:58621733-58621752 None:intergenic 35.0%
TTTCCCAAGATGATGCTTAT+TGG - chr1.4:58623103-58623122 MS.gene39956:CDS 35.0%
! ATGGTTCGGAATTGAAGAAA+AGG - chr1.4:58621910-58621929 MS.gene39956:intron 35.0%
! GATAGCAGTATTTTCAGACT+CGG + chr1.4:58620878-58620897 None:intergenic 35.0%
! GATGATGGTGTTAGAAATTG+GGG - chr1.4:58621474-58621493 MS.gene39956:intron 35.0%
! GTTGTTTCAATTTCACCACA+AGG - chr1.4:58621029-58621048 MS.gene39956:intron 35.0%
! TTATGCGGTTTACCTTTTTC+CGG + chr1.4:58623203-58623222 None:intergenic 35.0%
! TTTTAGCATATGCTGCATTC+TGG + chr1.4:58621734-58621753 None:intergenic 35.0%
!! ACTTCTCTTGATGATGATGT+AGG - chr1.4:58623222-58623241 MS.gene39956:CDS 35.0%
!! ATTTTTGCTATGAGAATGCG+TGG - chr1.4:58622839-58622858 MS.gene39956:CDS 35.0%
!! CTGATGATGGTGTTAGAAAT+TGG - chr1.4:58621472-58621491 MS.gene39956:intron 35.0%
!! GAAATTGAGTTGAGAGTTGT+CGG + chr1.4:58622477-58622496 None:intergenic 35.0%
!! TATTTTCAGACTCGGTTTCA+AGG + chr1.4:58620870-58620889 None:intergenic 35.0%
!! TGGTGATTTTAACGACATCT+TGG - chr1.4:58622516-58622535 MS.gene39956:CDS 35.0%
!! TTAGGTTGGATGAAACCAAA+TGG + chr1.4:58621195-58621214 None:intergenic 35.0%
!!! AATTGGGTGTTTTTTGTCAC+AGG - chr1.4:58621394-58621413 MS.gene39956:intron 35.0%
!!! CCTTGAATCACATCGATTTT+TGG - chr1.4:58621151-58621170 MS.gene39956:CDS 35.0%
AACAAATGTTAGTCATGGGG+GGG - chr1.4:58622004-58622023 MS.gene39956:intron 40.0%
ACACGCCATTCTTTCTTCAA+AGG + chr1.4:58621327-58621346 None:intergenic 40.0%
ACCAGCAAGGTTAAGATTTG+TGG + chr1.4:58620815-58620834 None:intergenic 40.0%
ACGCCAATAAGCATCATCTT+GGG + chr1.4:58623109-58623128 None:intergenic 40.0%
AGCAAGCATACGATCATTGA+AGG + chr1.4:58621667-58621686 None:intergenic 40.0%
AGGAGCTAGTTACTAACTCA+TGG - chr1.4:58622881-58622900 MS.gene39956:CDS 40.0%
ATCCAACCTAAAGTAGGTCA+AGG - chr1.4:58621204-58621223 MS.gene39956:CDS 40.0%
ATCCTTGAACACTGCTTGAT+AGG - chr1.4:58620895-58620914 MS.gene39956:intron 40.0%
ATGGGATAGTGATCAGAAGA+AGG + chr1.4:58622772-58622791 None:intergenic 40.0%
CAAATGGTTCTCCATTCTGA+AGG + chr1.4:58621950-58621969 None:intergenic 40.0%
CAACTCTCAACTCAATTTCC+AGG - chr1.4:58622478-58622497 MS.gene39956:CDS 40.0%
CAGACCTTAAGTACCTAGTT+CGG - chr1.4:58622164-58622183 MS.gene39956:CDS 40.0%
CCAAAATAAAGCTAAACCCC+CGG + chr1.4:58622308-58622327 None:intergenic 40.0%
CCAGCAAGGTTAAGATTTGT+GGG + chr1.4:58620814-58620833 None:intergenic 40.0%
CGCTCTTCATGGCTTATAAA+TGG - chr1.4:58622568-58622587 MS.gene39956:CDS 40.0%
CTAAAGTAGGTCAAGGGATA+GGG - chr1.4:58621211-58621230 MS.gene39956:CDS 40.0%
CTTGGACACTAGTGAGAAAA+GGG - chr1.4:58622534-58622553 MS.gene39956:CDS 40.0%
CTTGTTTCATAGCAGTGAGT+TGG + chr1.4:58621698-58621717 None:intergenic 40.0%
GAACAAATGTTAGTCATGGG+GGG - chr1.4:58622003-58622022 MS.gene39956:intron 40.0%
GAAGAACTTCGTTGTTTGCT+TGG - chr1.4:58622244-58622263 MS.gene39956:CDS 40.0%
GCAAGGAAATGCAAGACATT+CGG - chr1.4:58623016-58623035 MS.gene39956:CDS 40.0%
GGAACAAATGTTAGTCATGG+GGG - chr1.4:58622002-58622021 MS.gene39956:intron 40.0%
GGCTATTATGGCTATCCTAA+TGG - chr1.4:58622421-58622440 MS.gene39956:CDS 40.0%
GGTTTCATCCAACCTAAAGT+AGG - chr1.4:58621198-58621217 MS.gene39956:CDS 40.0%
GTACCAATCTTGTGTGAAAC+CGG + chr1.4:58621513-58621532 None:intergenic 40.0%
GTTACGATCACAAAGTCTGT+TGG - chr1.4:58620997-58621016 MS.gene39956:intron 40.0%
GTTTCAATTTCACCACAAGG+TGG - chr1.4:58621032-58621051 MS.gene39956:intron 40.0%
TCAATCTCAAATGGAACAGC+AGG + chr1.4:58621864-58621883 None:intergenic 40.0%
TCCAACCTAAAGTAGGTCAA+GGG - chr1.4:58621205-58621224 MS.gene39956:CDS 40.0%
TCTTGGACACTAGTGAGAAA+AGG - chr1.4:58622533-58622552 MS.gene39956:CDS 40.0%
TGAAACCAAATGGAAGACCA+TGG + chr1.4:58621185-58621204 None:intergenic 40.0%
TGCTATTGTTGAGACTCTTG+TGG - chr1.4:58622744-58622763 MS.gene39956:CDS 40.0%
TTGGACACTAGTGAGAAAAG+GGG - chr1.4:58622535-58622554 MS.gene39956:CDS 40.0%
TTGTCGGAGAAAATTCCAAG+CGG + chr1.4:58622461-58622480 None:intergenic 40.0%
TTTATGTGCGGAAGACATGT+GGG - chr1.4:58622942-58622961 MS.gene39956:CDS 40.0%
! AAATAACGAGGAAGTGCATG+AGG - chr1.4:58621884-58621903 MS.gene39956:intron 40.0%
! AGACTCGGTTTCAAGGTTTA+GGG + chr1.4:58620863-58620882 None:intergenic 40.0%
! CGGTTCCTTTGAAGAAAGAA+TGG - chr1.4:58621319-58621338 MS.gene39956:intron 40.0%
! GAGTTTTCTAGGTACTCTCA+AGG - chr1.4:58621233-58621252 MS.gene39956:CDS 40.0%
! GCGCACTTGCTAATGATTTA+TGG - chr1.4:58622704-58622723 MS.gene39956:CDS 40.0%
! TATGAGTTGGACTCTGATGA+TGG - chr1.4:58621459-58621478 MS.gene39956:intron 40.0%
! TATGCGGTTTACCTTTTTCC+GGG + chr1.4:58623202-58623221 None:intergenic 40.0%
! TGATTCAAGGGCACAAAACT+GGG + chr1.4:58621141-58621160 None:intergenic 40.0%
! TTAAGGTCTGGAATTGCACT+CGG + chr1.4:58622154-58622173 None:intergenic 40.0%
! TTCTTGCATGCCTTGTTCAT+TGG + chr1.4:58623259-58623278 None:intergenic 40.0%
AAGACATGTGGGAGTGGAAT+AGG - chr1.4:58622953-58622972 MS.gene39956:CDS 45.0%
ACTGGATTTCACGATCAGCA+AGG + chr1.4:58620927-58620946 None:intergenic 45.0%
AGTGCATGAGGACAATGGTT+CGG - chr1.4:58621896-58621915 MS.gene39956:intron 45.0%
ATATCCCCATCAGCAGCAAA+TGG + chr1.4:58621966-58621985 None:intergenic 45.0%
CAAGTCCATGGTCTTCCATT+TGG - chr1.4:58621177-58621196 MS.gene39956:CDS 45.0%
CAGAGTGGCTATTGATGTCA+CGG - chr1.4:58621299-58621318 MS.gene39956:CDS 45.0%
CCCACAAATCTTAACCTTGC+TGG - chr1.4:58620811-58620830 MS.gene39956:CDS 45.0%
CCTAAAGTAGGTCAAGGGAT+AGG - chr1.4:58621210-58621229 MS.gene39956:CDS 45.0%
CCTATCCCTTGACCTACTTT+AGG + chr1.4:58621213-58621232 None:intergenic 45.0%
CGAACTAGGTACTTAAGGTC+TGG + chr1.4:58622166-58622185 None:intergenic 45.0%
CGCATGTTCAACCTTCAGAA+TGG - chr1.4:58621936-58621955 MS.gene39956:intron 45.0%
CGTTTATGAACTTGAGGCCA+AGG + chr1.4:58622817-58622836 None:intergenic 45.0%
CTAAACTCATTTGCCTAGGC+AGG + chr1.4:58622102-58622121 None:intergenic 45.0%
CTCTTCCTCTACAGGTACTT+CGG - chr1.4:58621797-58621816 MS.gene39956:intron 45.0%
CTTTATGTGCGGAAGACATG+TGG - chr1.4:58622941-58622960 MS.gene39956:CDS 45.0%
GACCTATCAAGCAGTGTTCA+AGG + chr1.4:58620900-58620919 None:intergenic 45.0%
GACGCCAATAAGCATCATCT+TGG + chr1.4:58623110-58623129 None:intergenic 45.0%
GATGAGCAAGATGTAATGGC+AGG - chr1.4:58622062-58622081 MS.gene39956:intron 45.0%
GCCACTAAACTCATTTGCCT+AGG + chr1.4:58622106-58622125 None:intergenic 45.0%
GCCTAGGCAAATGAGTTTAG+TGG - chr1.4:58622102-58622121 MS.gene39956:CDS 45.0%
GCTAGTTACTAACTCATGGC+AGG - chr1.4:58622885-58622904 MS.gene39956:CDS 45.0%
GGCAAATGAGTTTAGTGGCA+TGG - chr1.4:58622107-58622126 MS.gene39956:CDS 45.0%
GGTCTGACTTTGTCTGAAGA+GGG - chr1.4:58620832-58620851 MS.gene39956:intron 45.0%
GTAACTAGCTCCTTAAACCC+CGG + chr1.4:58622874-58622893 None:intergenic 45.0%
GTCAACGCGCTAAAACTCAT+TGG - chr1.4:58623127-58623146 MS.gene39956:CDS 45.0%
GTTATGGATCGAATCAACCC+TGG - chr1.4:58621108-58621127 MS.gene39956:CDS 45.0%
GTTCGCTGAAATAGGCAAAC+TGG + chr1.4:58620945-58620964 None:intergenic 45.0%
GTTTAGTGGCATGGAATTGC+CGG - chr1.4:58622116-58622135 MS.gene39956:CDS 45.0%
TCCCTTGACCTACTTTAGGT+TGG + chr1.4:58621209-58621228 None:intergenic 45.0%
TGACATCAATAGCCACTCTG+AGG + chr1.4:58621299-58621318 None:intergenic 45.0%
TGCTTGCAAAGTGCATCTTC+TGG - chr1.4:58621773-58621792 MS.gene39956:intron 45.0%
TGGACACTAGTGAGAAAAGG+GGG - chr1.4:58622536-58622555 MS.gene39956:CDS 45.0%
TGGTCTGACTTTGTCTGAAG+AGG - chr1.4:58620831-58620850 MS.gene39956:intron 45.0%
TGTGAGCTAGAGTCTCACTA+AGG + chr1.4:58622213-58622232 None:intergenic 45.0%
TTATCTGACGTCCCGATTGA+AGG - chr1.4:58622619-58622638 MS.gene39956:CDS 45.0%
TTTAGTGGCATGGAATTGCC+GGG - chr1.4:58622117-58622136 MS.gene39956:CDS 45.0%
TTTGCTGCTGATGGGGATAT+GGG - chr1.4:58621966-58621985 MS.gene39956:intron 45.0%
! AAGCCGGTTTCACACAAGAT+TGG - chr1.4:58621507-58621526 MS.gene39956:intron 45.0%
! AGAACCATTTGCTGCTGATG+GGG - chr1.4:58621959-58621978 MS.gene39956:intron 45.0%
! AGTGCCGAACTAGGTACTTA+AGG + chr1.4:58622171-58622190 None:intergenic 45.0%
! ATTTGCTGCTGATGGGGATA+TGG - chr1.4:58621965-58621984 MS.gene39956:intron 45.0%
! CAAGGGATAGGGAGTTTTCT+AGG - chr1.4:58621222-58621241 MS.gene39956:CDS 45.0%
! CAGACTCGGTTTCAAGGTTT+AGG + chr1.4:58620864-58620883 None:intergenic 45.0%
! GAGAACCATTTGCTGCTGAT+GGG - chr1.4:58621958-58621977 MS.gene39956:intron 45.0%
! GTGATCGTAACCCTTTTGAC+TGG + chr1.4:58620988-58621007 None:intergenic 45.0%
! GTGATTCAAGGGCACAAAAC+TGG + chr1.4:58621142-58621161 None:intergenic 45.0%
! TAAGGTCTGGAATTGCACTC+GGG + chr1.4:58622153-58622172 None:intergenic 45.0%
! TATAAGCCATGAAGAGCGCA+TGG + chr1.4:58622566-58622585 None:intergenic 45.0%
! TCTTGTGTGAAACCGGCTTA+AGG + chr1.4:58621506-58621525 None:intergenic 45.0%
!! GCATAAGAGTGCTTGCTGAA+TGG + chr1.4:58622912-58622931 None:intergenic 45.0%
!! TCATAGCAGTGAGTTGGTTC+TGG + chr1.4:58621692-58621711 None:intergenic 45.0%
!!! CCGGGGGTTTAGCTTTATTT+TGG - chr1.4:58622305-58622324 MS.gene39956:CDS 45.0%
!!! GATTTTTGGCTGCAAGTCCA+TGG - chr1.4:58621165-58621184 MS.gene39956:CDS 45.0%
!!! GGTGTTTTTTGTCACAGGTG+CGG - chr1.4:58621399-58621418 MS.gene39956:intron 45.0%
AATGGCAGGTCCTGATGATC+AGG - chr1.4:58622076-58622095 MS.gene39956:intron 50.0%
ACAAAACTGGGAACGACACC+AGG + chr1.4:58621129-58621148 None:intergenic 50.0%
ACAACCACGGACCTTCATCA+AGG + chr1.4:58621071-58621090 None:intergenic 50.0%
ACATTCGGCTGCATGTTACC+GGG - chr1.4:58623031-58623050 MS.gene39956:CDS 50.0%
AGGCGCAACACTGACAAGTA+TGG + chr1.4:58622791-58622810 None:intergenic 50.0%
CAAAACTGGGAACGACACCA+GGG + chr1.4:58621128-58621147 None:intergenic 50.0%
CAACTCAATTTCCAGGTCCG+TGG - chr1.4:58622485-58622504 MS.gene39956:CDS 50.0%
CAGACAAAGTCAGACCAGCA+AGG + chr1.4:58620828-58620847 None:intergenic 50.0%
CCTAGTTCGGCACTTCAATC+CGG - chr1.4:58622177-58622196 MS.gene39956:CDS 50.0%
CGACATGCGTTCGCTGAAAT+AGG + chr1.4:58620953-58620972 None:intergenic 50.0%
CGTCGAGCTGTTCTTGATTC+AGG - chr1.4:58622595-58622614 MS.gene39956:CDS 50.0%
CTTGCTTGGTCATACGGACA+AGG - chr1.4:58621422-58621441 MS.gene39956:intron 50.0%
CTTGGCATTTGGCGTCTTAC+CGG - chr1.4:58622400-58622419 MS.gene39956:CDS 50.0%
GACATTCGGCTGCATGTTAC+CGG - chr1.4:58623030-58623049 MS.gene39956:CDS 50.0%
GAGTCCAACTCATACAGCTC+CGG + chr1.4:58621453-58621472 None:intergenic 50.0%
GATATACCTGCTGCTGGTAC+CGG - chr1.4:58621630-58621649 MS.gene39956:intron 50.0%
GCTGTTCTACGACCTCCATT+AGG + chr1.4:58622439-58622458 None:intergenic 50.0%
GGACATCGAAGATTGTCGCA+AGG - chr1.4:58622999-58623018 MS.gene39956:CDS 50.0%
GGCGCAACACTGACAAGTAT+GGG + chr1.4:58622790-58622809 None:intergenic 50.0%
GGTACTCTCAAGGCATACGA+TGG - chr1.4:58621243-58621262 MS.gene39956:CDS 50.0%
GTACTGCTGCAACCAATCGT+TGG - chr1.4:58621529-58621548 MS.gene39956:intron 50.0%
TCATACGGACAAGGTGTGTC+CGG - chr1.4:58621431-58621450 MS.gene39956:intron 50.0%
TGAACTTGAGGCCAAGGTGT+AGG + chr1.4:58622811-58622830 None:intergenic 50.0%
TGCCTGGAAGCCAGTCAAAA+GGG - chr1.4:58620975-58620994 MS.gene39956:intron 50.0%
TGCTTTCATGTAGACCGCAC+CGG - chr1.4:58622277-58622296 MS.gene39956:CDS 50.0%
TGGCGTGTTCGTGCTAGTAA+CGG - chr1.4:58621339-58621358 MS.gene39956:intron 50.0%
TTAGTGGCATGGAATTGCCG+GGG - chr1.4:58622118-58622137 MS.gene39956:CDS 50.0%
! CGAAGTACCTGTAGAGGAAG+AGG + chr1.4:58621799-58621818 None:intergenic 50.0%
! GAGGAAGTGCATGAGGACAA+TGG - chr1.4:58621891-58621910 MS.gene39956:intron 50.0%
! GGAGAACCATTTGCTGCTGA+TGG - chr1.4:58621957-58621976 MS.gene39956:intron 50.0%
! TGGCGTCTTACCGGCTATTA+TGG - chr1.4:58622409-58622428 MS.gene39956:CDS 50.0%
!! CATGCGATTTTGATCCTCCC+CGG + chr1.4:58623052-58623071 None:intergenic 50.0%
!!! AACCCTTTTGACTGGCTTCC+AGG + chr1.4:58620980-58620999 None:intergenic 50.0%
AACCTTTCTTCCACCGCACG+CGG + chr1.4:58622679-58622698 None:intergenic 55.0%
AATGCGTGGCAGCTTGAACC+GGG - chr1.4:58622853-58622872 MS.gene39956:CDS 55.0%
ATTTGCGCCACCAGCAGCAT+TGG + chr1.4:58621592-58621611 None:intergenic 55.0%
CAGGTAGCCCGAGCACTATA+GGG + chr1.4:58621845-58621864 None:intergenic 55.0%
CATTCGGCTGCATGTTACCG+GGG - chr1.4:58623032-58623051 MS.gene39956:CDS 55.0%
CCAAAGATACACCACGGACC+TGG + chr1.4:58622499-58622518 None:intergenic 55.0%
CCAGGTCCGTGGTGTATCTT+TGG - chr1.4:58622496-58622515 MS.gene39956:CDS 55.0%
CTTCTGGCCTCTTCCTCTAC+AGG - chr1.4:58621789-58621808 MS.gene39956:intron 55.0%
GAATGCGTGGCAGCTTGAAC+CGG - chr1.4:58622852-58622871 MS.gene39956:CDS 55.0%
GCAGCTTGAACCGGGGTTTA+AGG - chr1.4:58622861-58622880 MS.gene39956:CDS 55.0%
GCAGGTATATCGCAGCCAAC+AGG + chr1.4:58621621-58621640 None:intergenic 55.0%
GCGGTCTGGCAGCATATTAG+AGG + chr1.4:58621823-58621842 None:intergenic 55.0%
GCGTCTCGTGTCCTTGATGA+AGG - chr1.4:58621057-58621076 MS.gene39956:CDS 55.0%
GGGGTCTTGAAGCCAACGAT+TGG + chr1.4:58621544-58621563 None:intergenic 55.0%
GTGCCTGGAAGCCAGTCAAA+AGG - chr1.4:58620974-58620993 MS.gene39956:intron 55.0%
GTGTCCGGAGCTGTATGAGT+TGG - chr1.4:58621446-58621465 MS.gene39956:intron 55.0%
GTGTCCTTGATGAAGGTCCG+TGG - chr1.4:58621064-58621083 MS.gene39956:CDS 55.0%
TCAGTGTTGCGCCTACACCT+TGG - chr1.4:58622797-58622816 MS.gene39956:CDS 55.0%
TGCCTATATGCGCCTCAGAG+TGG - chr1.4:58621284-58621303 MS.gene39956:CDS 55.0%
TTCATGCTTCGGCAACAGCC+CGG - chr1.4:58623181-58623200 MS.gene39956:CDS 55.0%
TTCGGCAACAGCCCGGAAAA+AGG - chr1.4:58623188-58623207 MS.gene39956:CDS 55.0%
TTGGGGAGCTGACCTTAAGC+CGG - chr1.4:58621491-58621510 MS.gene39956:intron 55.0%
! AGAGGCCGAAGTACCTGTAG+AGG + chr1.4:58621805-58621824 None:intergenic 55.0%
! GTGCGGCTTGCTTGGTCATA+CGG - chr1.4:58621416-58621435 MS.gene39956:intron 55.0%
!! AGCCACTCTGAGGCGCATAT+AGG + chr1.4:58621289-58621308 None:intergenic 55.0%
!! CCGGATTGAAGTGCCGAACT+AGG + chr1.4:58622180-58622199 None:intergenic 55.0%
ACCTTTCTTCCACCGCACGC+GGG + chr1.4:58622678-58622697 None:intergenic 60.0%
AGCTAAACCCCCGGCTCTTC+CGG + chr1.4:58622299-58622318 None:intergenic 60.0%
ATGCGTGGCAGCTTGAACCG+GGG - chr1.4:58622854-58622873 MS.gene39956:CDS 60.0%
CACGAGACGCATCCACCTTG+TGG + chr1.4:58621047-58621066 None:intergenic 60.0%
CAGACCGCCCTATAGTGCTC+GGG - chr1.4:58621835-58621854 MS.gene39956:intron 60.0%
CCAGACCGCCCTATAGTGCT+CGG - chr1.4:58621834-58621853 MS.gene39956:intron 60.0%
CCTAGGCAGGCCTGATCATC+AGG + chr1.4:58622089-58622108 None:intergenic 60.0%
CCTGATGATCAGGCCTGCCT+AGG - chr1.4:58622086-58622105 MS.gene39956:CDS 60.0%
CGCCAAACCAATGCTGCTGG+TGG - chr1.4:58621582-58621601 MS.gene39956:intron 60.0%
GAGGTCGTAGAACAGCCGCT+TGG - chr1.4:58622443-58622462 MS.gene39956:CDS 60.0%
GCAGGTAGCCCGAGCACTAT+AGG + chr1.4:58621846-58621865 None:intergenic 60.0%
GCATGGAATTGCCGGGGTGT+AGG - chr1.4:58622124-58622143 MS.gene39956:CDS 60.0%
GGATTTCCGGTACCAGCAGC+AGG + chr1.4:58621639-58621658 None:intergenic 60.0%
GGCGCAAATGCTGCTCCTGT+TGG - chr1.4:58621603-58621622 MS.gene39956:intron 60.0%
GGCTGCGATATACCTGCTGC+TGG - chr1.4:58621624-58621643 MS.gene39956:intron 60.0%
GTAGCCCGAGCACTATAGGG+CGG + chr1.4:58621842-58621861 None:intergenic 60.0%
GTGCGGAAGACATGTGGGAG+TGG - chr1.4:58622947-58622966 MS.gene39956:CDS 60.0%
! TGTCACAGGTGCGGCTTGCT+TGG - chr1.4:58621408-58621427 MS.gene39956:intron 60.0%
!! ATTGGTTTGGCGCGGCACAG+AGG + chr1.4:58621574-58621593 None:intergenic 60.0%
!! CCAGCAGCATTGGTTTGGCG+CGG + chr1.4:58621582-58621601 None:intergenic 60.0%
!! CGCCACCAGCAGCATTGGTT+TGG + chr1.4:58621587-58621606 None:intergenic 60.0%
AAGTCTTGGCACCCCGCGTG+CGG - chr1.4:58622663-58622682 MS.gene39956:CDS 65.0%
CACTCGGGCTACCTACACCC+CGG + chr1.4:58622138-58622157 None:intergenic 65.0%
CCGAGCACTATAGGGCGGTC+TGG + chr1.4:58621837-58621856 None:intergenic 65.0%
CCGCGCCAAACCAATGCTGC+TGG - chr1.4:58621579-58621598 MS.gene39956:intron 65.0%
CCTTTCTTCCACCGCACGCG+GGG + chr1.4:58622677-58622696 None:intergenic 65.0%
GGCGCACCATGCGCTCTTCA+TGG - chr1.4:58622557-58622576 MS.gene39956:CDS 65.0%
GTAGACCGCACCGGAAGAGC+CGG - chr1.4:58622286-58622305 MS.gene39956:CDS 65.0%
TAGACCGCACCGGAAGAGCC+GGG - chr1.4:58622287-58622306 MS.gene39956:CDS 65.0%
TCGGCTGCATGTTACCGGGG+AGG - chr1.4:58623035-58623054 MS.gene39956:CDS 65.0%
TTTGGCGCGGCACAGAGGCA+GGG + chr1.4:58621569-58621588 None:intergenic 65.0%
AACCCCCGGCTCTTCCGGTG+CGG + chr1.4:58622294-58622313 None:intergenic 70.0%
AGACCGCACCGGAAGAGCCG+GGG - chr1.4:58622288-58622307 MS.gene39956:CDS 70.0%
CCCCGCGTGCGGTGGAAGAA+AGG - chr1.4:58622674-58622693 MS.gene39956:CDS 70.0%
CGCGGCACAGAGGCAGGGAT+GGG + chr1.4:58621564-58621583 None:intergenic 70.0%
GCGAACGCATGTCGCGTGCC+TGG - chr1.4:58620959-58620978 MS.gene39956:intron 70.0%
GCGGCACAGAGGCAGGGATG+GGG + chr1.4:58621563-58621582 None:intergenic 70.0%
GTTTGGCGCGGCACAGAGGC+AGG + chr1.4:58621570-58621589 None:intergenic 70.0%
GACCGCACCGGAAGAGCCGG+GGG - chr1.4:58622289-58622308 MS.gene39956:CDS 75.0%
GCGCGGCACAGAGGCAGGGA+TGG + chr1.4:58621565-58621584 None:intergenic 75.0%
TCTTGGCACCCCGCGTGCGG+TGG - chr1.4:58622666-58622685 MS.gene39956:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 58620805 58623282 58620805 ID=MS.gene39956
chr1.4 mRNA 58620805 58623282 58620805 ID=MS.gene39956.t1;Parent=MS.gene39956
chr1.4 exon 58622077 58623282 58622077 ID=MS.gene39956.t1.exon1;Parent=MS.gene39956.t1
chr1.4 CDS 58622077 58623282 58622077 ID=cds.MS.gene39956.t1;Parent=MS.gene39956.t1
chr1.4 exon 58621043 58621330 58621043 ID=MS.gene39956.t1.exon2;Parent=MS.gene39956.t1
chr1.4 CDS 58621043 58621330 58621043 ID=cds.MS.gene39956.t1;Parent=MS.gene39956.t1
chr1.4 exon 58620805 58620843 58620805 ID=MS.gene39956.t1.exon3;Parent=MS.gene39956.t1
chr1.4 CDS 58620805 58620843 58620805 ID=cds.MS.gene39956.t1;Parent=MS.gene39956.t1
Gene Sequence

>MS.gene39956

ATGGATCCCACAAATCTTAACCTTGCTGGTCTGACTTTGTCTGAAGAGGGTCTAACCCTAAACCTTGAAACCGAGTCTGAAAATACTGCTATCCTTGAACACTGCTTGATAGGTCGAGTCCTTGCTGATCGTGAAATCCAGTTTGCCTATTTCAGCGAACGCATGTCGCGTGCCTGGAAGCCAGTCAAAAGGGTTACGATCACAAAGTCTGTTGGTGATCGCTTGTTGTTTCAATTTCACCACAAGGTGGATGCGTCTCGTGTCCTTGATGAAGGTCCGTGGTTGTATGATAATTTTCATATTGTTATGGATCGAATCAACCCTGGTGTCGTTCCCAGTTTTGTGCCCTTGAATCACATCGATTTTTGGCTGCAAGTCCATGGTCTTCCATTTGGTTTCATCCAACCTAAAGTAGGTCAAGGGATAGGGAGTTTTCTAGGTACTCTCAAGGCATACGATGGTCGTAACACAATTCACAGTGCCTATATGCGCCTCAGAGTGGCTATTGATGTCACGGTTCCTTTGAAGAAAGAATGGCGTGTTCGTGCTAGTAACGGTGCTTTTGTGACAGTTCATTTTAAATATGAGAAATTGGGTGTTTTTTGTCACAGGTGCGGCTTGCTTGGTCATACGGACAAGGTGTGTCCGGAGCTGTATGAGTTGGACTCTGATGATGGTGTTAGAAATTGGGGAGCTGACCTTAAGCCGGTTTCACACAAGATTGGTACTGCTGCAACCAATCGTTGGCTTCAAGACCCCATCCCTGCCTCTGTGCCGCGCCAAACCAATGCTGCTGGTGGCGCAAATGCTGCTCCTGTTGGCTGCGATATACCTGCTGCTGGTACCGGAAATCCAACATCCTTCAATGATCGTATGCTTGCTTTCCAGAACCAACTCACTGCTATGAAACAAGATGTTATCGCTGCCCAGAATGCAGCATATGCTAAAAAAGGTAACGGTTCTAATTCTGCTTGCAAAGTGCATCTTCTGGCCTCTTCCTCTACAGGTACTTCGGCCTCTAATATGCTGCCAGACCGCCCTATAGTGCTCGGGCTACCTGCTGTTCCATTTGAGATTGAAAATAACGAGGAAGTGCATGAGGACAATGGTTCGGAATTGAAGAAAAGGAAGCGCATGTTCAACCTTCAGAATGGAGAACCATTTGCTGCTGATGGGGATATGGGAAACAATGTAATAGGAACAAATGTTAGTCATGGGGGGGATGCTGAAATGAATGTATTTTCTAATCCTTTTTTTGATGAGCAAGATGTAATGGCAGGTCCTGATGATCAGGCCTGCCTAGGCAAATGAGTTTAGTGGCATGGAATTGCCGGGGTGTAGGTAGCCCGAGTGCAATTCCAGACCTTAAGTACCTAGTTCGGCACTTCAATCCGGATCTTTTATTCCTTAGTGAGACTCTAGCTCACAGAAATAAAATTGAAGAACTTCGTTGTTTGCTTGGTTACGATTCTTGCTTTCATGTAGACCGCACCGGAAGAGCCGGGGGTTTAGCTTTATTTTGGAAAAATTCTTTGCATTGTCAACTTATTAATTTTTCAAATAATCATATTACCGTTGAACTTGTAAATAATACTCTTGGCATTTGGCGTCTTACCGGCTATTATGGCTATCCTAATGGAGGTCGTAGAACAGCCGCTTGGAATTTTCTCCGACAACTCTCAACTCAATTTCCAGGTCCGTGGTGTATCTTTGGTGATTTTAACGACATCTTGGACACTAGTGAGAAAAGGGGGCGCACCATGCGCTCTTCATGGCTTATAAATGGCTTTCGTCGAGCTGTTCTTGATTCAGGTTTATCTGACGTCCCGATTGAAGGATATCCCTATACTTGGTTTAAAAGTCTTGGCACCCCGCGTGCGGTGGAAGAAAGGTTAGATCGCGCACTTGCTAATGATTTATGGTTTAATATGTTTCCAAATGCTATTGTTGAGACTCTTGTGGCACCTTCTTCTGATCACTATCCCATACTTGTCAGTGTTGCGCCTACACCTTGGCCTCAAGTTCATAAACGACATTTTTGCTATGAGAATGCGTGGCAGCTTGAACCGGGGTTTAAGGAGCTAGTTACTAACTCATGGCAGGACCATTCAGCAAGCACTCTTATGCCAAAGTTATCTTTATGTGCGGAAGACATGTGGGAGTGGAATAGGCATCATTGTAATAAAATCAAAAGGGACATCGAAGATTGTCGCAAGGAAATGCAAGACATTCGGCTGCATGTTACCGGGGAGGATCAAAATCGCATGCTTGAACTTCAAAAAAGAATGCAACGGCTGCTTTCCCAAGATGATGCTTATTGGCGTCAACGCGCTAAAACTCATTGGTACAAAGATGGAGACAGAAATACAAAGTTCTTTCATGCTTCGGCAACAGCCCGGAAAAAGGTAAACCGCATAACTTCTCTTGATGATGATGTAGGTAATAAAGTTACCAATGAACAAGGCATGCAAGAAGTAG

Protein sequence

>MS.gene39956.t1

MDPTNLNLAGLTLSEEGLTLNLETESENTAILEHCLIGRVLADREIQFAYFSERMSRAWKPVKRVTITKSVGDRLLFQFHHKVDASRVLDEGPWLYDNFHIVMDRINPGVVPSFVPLNHIDFWLQVHGLPFGFIQPKVGQGIGSFLGTLKAYDGRNTIHSAYMRLRVAIDVTVPLKKEWRVRASNGAFVTVHFKYEKLGVFCHRCGLLGHTDKVCPELYELDSDDGVRNWGADLKPVSHKIGTAATNRWLQDPIPASVPRQTNAAGGANAAPVGCDIPAAGTGNPTSFNDRMLAFQNQLTAMKQDVIAAQNAAYAKKGNGSNSACKVHLLASSSTGTSASNMLPDRPIVLGLPAVPFEIENNEEVHEDNGSELKKRKRMFNLQNGEPFAADGDMGNNVIGTNTLVAPSSDHYPILVSVAPTPWPQVHKRHFCYENAWQLEPGFKELVTNSWQDHSASTLMPKLSLCAEDMWEWNRHHCNKIKRDIEDCRKEMQDIRLHVIKLPMNKACKK