AlfalfaGEDB | MS.gene98471

M. sativa cultivar XinJiangDaYe / MS.gene98471

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98471.t1	AES70414.1	58	174	29	2	20	174	132	280	5.90E-40	174.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98471.t1	G7J017	58.0	174	29	2	20	174	132	280	4.3e-40	174.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene98471	MS.gene055560	PPI
MS.gene98471	MS.gene024297	PPI
MS.gene87529	MS.gene98471	PPI
MS.gene024405	MS.gene98471	PPI
MS.gene98471	MS.gene37537	PPI
MS.gene012748	MS.gene98471	PPI
MS.gene04134	MS.gene98471	PPI
MS.gene98471	MS.gene62249	PPI
MS.gene062067	MS.gene98471	PPI
MS.gene98471	MS.gene069786	PPI
MS.gene98471	MS.gene42010	PPI
MS.gene98471	MS.gene025158	PPI
MS.gene98471	MS.gene27329	PPI
MS.gene57044	MS.gene98471	PPI
MS.gene98471	MS.gene41393	PPI
MS.gene038676	MS.gene98471	PPI
MS.gene98471	MS.gene016632	PPI
MS.gene98471	MS.gene018474	PPI
MS.gene71637	MS.gene98471	PPI
MS.gene042651	MS.gene98471	PPI
MS.gene98471	MS.gene40469	PPI
MS.gene05576	MS.gene98471	PPI
MS.gene034643	MS.gene98471	PPI
MS.gene56991	MS.gene98471	PPI
MS.gene98471	MS.gene037049	PPI
MS.gene98471	MS.gene026680	PPI
MS.gene98471	MS.gene61499	PPI
MS.gene071784	MS.gene98471	PPI
MS.gene98471	MS.gene019165	PPI
MS.gene061579	MS.gene98471	PPI
MS.gene98471	MS.gene81194	PPI
MS.gene98471	MS.gene060773	PPI
MS.gene76420	MS.gene98471	PPI
MS.gene071320	MS.gene98471	PPI
MS.gene42903	MS.gene98471	PPI
MS.gene81712	MS.gene98471	PPI
MS.gene026680	MS.gene98471	PPI
MS.gene98471	MS.gene038394	PPI
MS.gene98471	MS.gene019001	PPI
MS.gene048747	MS.gene98471	PPI
MS.gene98471	MS.gene53904	PPI
MS.gene98471	MS.gene24070	PPI
MS.gene042559	MS.gene98471	PPI
MS.gene44083	MS.gene98471	PPI
MS.gene98471	MS.gene73261	PPI
MS.gene22200	MS.gene98471	PPI
MS.gene98471	MS.gene85538	PPI
MS.gene98471	MS.gene025675	PPI
MS.gene98471	MS.gene26844	PPI
MS.gene98471	MS.gene055546	PPI
MS.gene26038	MS.gene98471	PPI
MS.gene98471	MS.gene71637	PPI
MS.gene98471	MS.gene55209	PPI
MS.gene98471	MS.gene074257	PPI
MS.gene98471	MS.gene073573	PPI
MS.gene98471	MS.gene28718	PPI
MS.gene031967	MS.gene98471	PPI
MS.gene34812	MS.gene98471	PPI
MS.gene02896	MS.gene98471	PPI
MS.gene063214	MS.gene98471	PPI
MS.gene97410	MS.gene98471	PPI
MS.gene32415	MS.gene98471	PPI
MS.gene035626	MS.gene98471	PPI
MS.gene98471	MS.gene068629	PPI
MS.gene98471	MS.gene009781	PPI
MS.gene067340	MS.gene98471	PPI
MS.gene65623	MS.gene98471	PPI
MS.gene71675	MS.gene98471	PPI
MS.gene69495	MS.gene98471	PPI
MS.gene049512	MS.gene98471	PPI
MS.gene98471	MS.gene29406	PPI
MS.gene98471	MS.gene21066	PPI
MS.gene038623	MS.gene98471	PPI
MS.gene98471	MS.gene009213	PPI
MS.gene98471	MS.gene013890	PPI
MS.gene98471	MS.gene98127	PPI
MS.gene05357	MS.gene98471	PPI
MS.gene98471	MS.gene003264	PPI
MS.gene98471	MS.gene054652	PPI
MS.gene032311	MS.gene98471	PPI
MS.gene96174	MS.gene98471	PPI
MS.gene86849	MS.gene98471	PPI
MS.gene98471	MS.gene45083	PPI
MS.gene98471	MS.gene049561	PPI
MS.gene98471	MS.gene008658	PPI
MS.gene98471	MS.gene80362	PPI
MS.gene98471	MS.gene49057	PPI
MS.gene39956	MS.gene98471	PPI
MS.gene98471	MS.gene89815	PPI
MS.gene021968	MS.gene98471	PPI
MS.gene98471	MS.gene048088	PPI
MS.gene98471	MS.gene86868	PPI
MS.gene09589	MS.gene98471	PPI
MS.gene98471	MS.gene058889	PPI
MS.gene43393	MS.gene98471	PPI
MS.gene98471	MS.gene034643	PPI
MS.gene34197	MS.gene98471	PPI
MS.gene005120	MS.gene98471	PPI
MS.gene98471	MS.gene012889	PPI
MS.gene98471	MS.gene34463	PPI
MS.gene98471	MS.gene038757	PPI
MS.gene98471	MS.gene000506	PPI
MS.gene048072	MS.gene98471	PPI
MS.gene060386	MS.gene98471	PPI
MS.gene71588	MS.gene98471	PPI
MS.gene04749	MS.gene98471	PPI
MS.gene05436	MS.gene98471	PPI
MS.gene98471	MS.gene51804	PPI
MS.gene059736	MS.gene98471	PPI
MS.gene98471	MS.gene013644	PPI
MS.gene70932	MS.gene98471	PPI
MS.gene35175	MS.gene98471	PPI
MS.gene021965	MS.gene98471	PPI
MS.gene055683	MS.gene98471	PPI
MS.gene042614	MS.gene98471	PPI
MS.gene98471	MS.gene010890	PPI
MS.gene021555	MS.gene98471	PPI
MS.gene98471	MS.gene061579	PPI
MS.gene96109	MS.gene98471	PPI
MS.gene98471	MS.gene04970	PPI
MS.gene009121	MS.gene98471	PPI
MS.gene98471	MS.gene060788	PPI
MS.gene94654	MS.gene98471	PPI
MS.gene98471	MS.gene43924	PPI
MS.gene98471	MS.gene41643	PPI
MS.gene36069	MS.gene98471	PPI
MS.gene98471	MS.gene027994	PPI
MS.gene98471	MS.gene022929	PPI
MS.gene98471	MS.gene26433	PPI
MS.gene98471	MS.gene007022	PPI
MS.gene83772	MS.gene98471	PPI
MS.gene008927	MS.gene98471	PPI
MS.gene98471	MS.gene69584	PPI
MS.gene98471	MS.gene52349	PPI
MS.gene016102	MS.gene98471	PPI
MS.gene045614	MS.gene98471	PPI
MS.gene96541	MS.gene98471	PPI
MS.gene000634	MS.gene98471	PPI
MS.gene98471	MS.gene021647	PPI
MS.gene63762	MS.gene98471	PPI
MS.gene98471	MS.gene048342	PPI
MS.gene30208	MS.gene98471	PPI
MS.gene98471	MS.gene069624	PPI
MS.gene025873	MS.gene98471	PPI
MS.gene013676	MS.gene98471	PPI
MS.gene98471	MS.gene073582	PPI
MS.gene05358	MS.gene98471	PPI
MS.gene030090	MS.gene98471	PPI
MS.gene95561	MS.gene98471	PPI
MS.gene98471	MS.gene016719	PPI
MS.gene98471	MS.gene028714	PPI
MS.gene018196	MS.gene98471	PPI
MS.gene98471	MS.gene88393	PPI
MS.gene98471	MS.gene048706	PPI
MS.gene065627	MS.gene98471	PPI
MS.gene98471	MS.gene69586	PPI
MS.gene98471	MS.gene053373	PPI
MS.gene57019	MS.gene98471	PPI
MS.gene018745	MS.gene98471	PPI
MS.gene65546	MS.gene98471	PPI
MS.gene98471	MS.gene96163	PPI
MS.gene98471	MS.gene63150	PPI
MS.gene98471	MS.gene03936	PPI
MS.gene03936	MS.gene98471	PPI
MS.gene038098	MS.gene98471	PPI
MS.gene98471	MS.gene072852	PPI
MS.gene98471	MS.gene65474	PPI
MS.gene60059	MS.gene98471	PPI
MS.gene98471	MS.gene08708	PPI
MS.gene28545	MS.gene98471	PPI
MS.gene98471	MS.gene06164	PPI
MS.gene98471	MS.gene50392	PPI
MS.gene98471	MS.gene86275	PPI
MS.gene98471	MS.gene22730	PPI
MS.gene28718	MS.gene98471	PPI
MS.gene98471	MS.gene032299	PPI
MS.gene98471	MS.gene017586	PPI
MS.gene008275	MS.gene98471	PPI
MS.gene98471	MS.gene037634	PPI
MS.gene98471	MS.gene057828	PPI
MS.gene038757	MS.gene98471	PPI
MS.gene98471	MS.gene08606	PPI
MS.gene064966	MS.gene98471	PPI
MS.gene98471	MS.gene000640	PPI
MS.gene98471	MS.gene98756	PPI
MS.gene98471	MS.gene028716	PPI
MS.gene98471	MS.gene74639	PPI
MS.gene98471	MS.gene071133	PPI
MS.gene98471	MS.gene60266	PPI
MS.gene98471	MS.gene98467	PPI
MS.gene43924	MS.gene98471	PPI
MS.gene046089	MS.gene98471	PPI
MS.gene98471	MS.gene024522	PPI
MS.gene047954	MS.gene98471	PPI
MS.gene98471	MS.gene54051	PPI
MS.gene98471	MS.gene22111	PPI
MS.gene036423	MS.gene98471	PPI
MS.gene98471	MS.gene049610	PPI
MS.gene98471	MS.gene010290	PPI
MS.gene98471	MS.gene37955	PPI
MS.gene98471	MS.gene92517	PPI
MS.gene98471	MS.gene36069	PPI
MS.gene98471	MS.gene045875	PPI
MS.gene98471	MS.gene84790	PPI
MS.gene98471	MS.gene044729	PPI
MS.gene72520	MS.gene98471	PPI
MS.gene66651	MS.gene98471	PPI
MS.gene98471	MS.gene60390	PPI
MS.gene98471	MS.gene039692	PPI
MS.gene35202	MS.gene98471	PPI
MS.gene051449	MS.gene98471	PPI
MS.gene98471	MS.gene55682	PPI
MS.gene98471	MS.gene002590	PPI
MS.gene63743	MS.gene98471	PPI
MS.gene48477	MS.gene98471	PPI
MS.gene98471	MS.gene77990	PPI
MS.gene98471	MS.gene062511	PPI
MS.gene30136	MS.gene98471	PPI
MS.gene98471	MS.gene059269	PPI
MS.gene008861	MS.gene98471	PPI
MS.gene98471	MS.gene057934	PPI
MS.gene61452	MS.gene98471	PPI
MS.gene98471	MS.gene024841	PPI
MS.gene83979	MS.gene98471	PPI
MS.gene46941	MS.gene98471	PPI
MS.gene98471	MS.gene76420	PPI
MS.gene98471	MS.gene46353	PPI
MS.gene85295	MS.gene98471	PPI
MS.gene98471	MS.gene40828	PPI
MS.gene47792	MS.gene98471	PPI
MS.gene46948	MS.gene98471	PPI
MS.gene98471	MS.gene51799	PPI
MS.gene012019	MS.gene98471	PPI
MS.gene98471	MS.gene61651	PPI
MS.gene85308	MS.gene98471	PPI
MS.gene93396	MS.gene98471	PPI
MS.gene98471	MS.gene09023	PPI
MS.gene05231	MS.gene98471	PPI
MS.gene98471	MS.gene054508	PPI
MS.gene98471	MS.gene025987	PPI
MS.gene98471	MS.gene95960	PPI
MS.gene98471	MS.gene043140	PPI
MS.gene010656	MS.gene98471	PPI
MS.gene98471	MS.gene041264	PPI
MS.gene000629	MS.gene98471	PPI
MS.gene98471	MS.gene03149	PPI
MS.gene041264	MS.gene98471	PPI
MS.gene41979	MS.gene98471	PPI
MS.gene64130	MS.gene98471	PPI
MS.gene98471	MS.gene29321	PPI
MS.gene05319	MS.gene98471	PPI
MS.gene050679	MS.gene98471	PPI
MS.gene98471	MS.gene025401	PPI
MS.gene20246	MS.gene98471	PPI
MS.gene98471	MS.gene015093	PPI
MS.gene055223	MS.gene98471	PPI
MS.gene98471	MS.gene24278	PPI
MS.gene98471	MS.gene000379	PPI
MS.gene053747	MS.gene98471	PPI
MS.gene98471	MS.gene34618	PPI
MS.gene98471	MS.gene59460	PPI
MS.gene65471	MS.gene98471	PPI
MS.gene98471	MS.gene66650	PPI
MS.gene061850	MS.gene98471	PPI
MS.gene26433	MS.gene98471	PPI
MS.gene98471	MS.gene08713	PPI
MS.gene98471	MS.gene09517	PPI
MS.gene98471	MS.gene87845	PPI
MS.gene98616	MS.gene98471	PPI
MS.gene98471	MS.gene64178	PPI
MS.gene042027	MS.gene98471	PPI
MS.gene69490	MS.gene98471	PPI
MS.gene98471	MS.gene58419	PPI
MS.gene015248	MS.gene98471	PPI
MS.gene98471	MS.gene44144	PPI
MS.gene98471	MS.gene05576	PPI
MS.gene80362	MS.gene98471	PPI
MS.gene98471	MS.gene060718	PPI
MS.gene013193	MS.gene98471	PPI
MS.gene04970	MS.gene98471	PPI
MS.gene08106	MS.gene98471	PPI
MS.gene98471	MS.gene48477	PPI
MS.gene58419	MS.gene98471	PPI
MS.gene98471	MS.gene027169	PPI
MS.gene98471	MS.gene004417	PPI
MS.gene98471	MS.gene019177	PPI
MS.gene23521	MS.gene98471	PPI
MS.gene29406	MS.gene98471	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98471.t1	MTR_3g053920	55.429	175	34	2	19	174	131	280	1.10e-51	169
MS.gene98471.t1	MTR_8g463110	77.000	100	23	0	137	236	21	120	3.64e-33	126

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 72 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTGACGACGGTGTCCGTAAC+TGG	0.261198	5.4:+19020058	MS.gene98471:CDS
CCTATGCCTTGACCTACTTT+TGG	0.272981	5.4:-19019796	None:intergenic
GATGAGGGAAATACAGTAAT+AGG	0.305593	5.4:+19020561	MS.gene98471:CDS
CACCTTCAACAGTTGCATTT+CGG	0.328086	5.4:-19020203	None:intergenic
CTGGTGCTTGGACTGTCTGC+TGG	0.392114	5.4:+19020420	MS.gene98471:CDS
CCTACTTGGCCTCTGGTGCT+TGG	0.404644	5.4:+19020408	MS.gene98471:CDS
GACACACCACTCTTGTTTCA+AGG	0.410740	5.4:-19019911	None:intergenic
GCCAAAGCAAAACAAGGTTC+TGG	0.414080	5.4:+19020315	MS.gene98471:CDS
CTCTTACCGTCCTCTTCAAC+AGG	0.419316	5.4:+19020363	MS.gene98471:CDS
GTTGCTGCTGCTGCCTCTGT+TGG	0.421080	5.4:+19020180	MS.gene98471:CDS
GCAGCAGTAGTAAAAGGAAA+TGG	0.421529	5.4:-19020444	None:intergenic
TCCTCTTCAACAGGTAACTT+AGG	0.427895	5.4:+19020372	MS.gene98471:CDS
CGCGGCACAACTACGGGAAT+AGG	0.438628	5.4:-19020147	None:intergenic
GCAAAATCTCAAGAGGAAAT+CGG	0.445460	5.4:+19020465	MS.gene98471:CDS
TCTACTTCCTACTTGGCCTC+TGG	0.463232	5.4:+19020401	MS.gene98471:CDS
TGTATGGCGCGGCACAACTA+CGG	0.466101	5.4:-19020154	None:intergenic
GGTTCTGGTGCGAACTCTCC+AGG	0.468743	5.4:+19020330	MS.gene98471:CDS
GGTCCAATCTACTTCCTACT+TGG	0.469116	5.4:+19020394	MS.gene98471:CDS
AGGCCAAGTAGGAAGTAGAT+TGG	0.472065	5.4:-19020397	None:intergenic
TGAGATAAGCACCCCAGTTA+CGG	0.479656	5.4:-19020071	None:intergenic
TCGGTACTGCTGTAACCAAC+AGG	0.484719	5.4:+19020112	MS.gene98471:CDS
GCAGACAGTCCAAGCACCAG+AGG	0.486586	5.4:-19020417	None:intergenic
TGTCACAGGTGTGGTGTCCT+CGG	0.489686	5.4:+19019994	MS.gene98471:intron
CAGCAGCAGCAACATTTGTA+TGG	0.496877	5.4:-19020170	None:intergenic
TGATTTATCCAGCCAAAAGT+AGG	0.500370	5.4:+19019784	MS.gene98471:intron
CCTCTTCAACAGGTAACTTA+GGG	0.502533	5.4:+19020373	MS.gene98471:CDS
CCAAGCACCAGAGGCCAAGT+AGG	0.508320	5.4:-19020408	None:intergenic
TAGGAACAAATGTTAGTCAT+GGG	0.515296	5.4:+19020580	MS.gene98471:CDS
ACATACGGACAAGGTGTGTC+CGG	0.515722	5.4:+19020017	MS.gene98471:CDS
ACCATCCTGTCATTGAAGCT+TGG	0.516139	5.4:-19020234	None:intergenic
GTATGGCGCGGCACAACTAC+GGG	0.516948	5.4:-19020153	None:intergenic
GTACCGATACGTTGCAAAGT+AGG	0.518389	5.4:-19020096	None:intergenic
GGTAAGAGATGTACCATGCC+TGG	0.518626	5.4:-19020348	None:intergenic
TGACGACGGTGTCCGTAACT+GGG	0.523857	5.4:+19020059	MS.gene98471:CDS
TGCAACTGTTGAAGGTGTAC+TGG	0.530799	5.4:+19020209	MS.gene98471:CDS
GAAGAAAATAAAGAGGATGC+TGG	0.533193	5.4:+19020497	MS.gene98471:CDS
TGGTTCCAAGCTTCAATGAC+AGG	0.533487	5.4:+19020229	MS.gene98471:CDS
GCTTTCAATTCAAACAGCTC+CGG	0.535106	5.4:-19020036	None:intergenic
GCAGCACGTGTTCTCGATGA+AGG	0.536950	5.4:+19019643	MS.gene98471:CDS
GGCCGAAATGCAACTGTTGA+AGG	0.538531	5.4:+19020201	MS.gene98471:CDS
GTGTGGTGTCCTCGGACATA+CGG	0.541284	5.4:+19020002	MS.gene98471:CDS
GCAGCAACATTTGTATGGCG+CGG	0.542401	5.4:-19020165	None:intergenic
ATAGGAACAAATGTTAGTCA+TGG	0.543713	5.4:+19020579	MS.gene98471:CDS
ATGAATTGTCACCATTCTGA+AGG	0.545818	5.4:-19020521	None:intergenic
CCCTAAGTTACCTGTTGAAG+AGG	0.548014	5.4:-19020373	None:intergenic
AGGATCTTGTATCCACCTGT+TGG	0.567194	5.4:-19020127	None:intergenic
TACTGCTGCAAAATCTCAAG+AGG	0.568886	5.4:+19020458	MS.gene98471:CDS
CTGAATTGAAGAAAATAAAG+AGG	0.569177	5.4:+19020490	MS.gene98471:CDS
TGCGACACAGATACACATAT+AGG	0.572503	5.4:-19019872	None:intergenic
ACACACCACTCTTGTTTCAA+GGG	0.575839	5.4:-19019910	None:intergenic
AAGCCTACTTTGCAACGTAT+CGG	0.575843	5.4:+19020093	MS.gene98471:CDS
TGGTGCGAACTCTCCAGGCA+TGG	0.581722	5.4:+19020335	MS.gene98471:CDS
CCAAAAGTAGGTCAAGGCAT+AGG	0.584813	5.4:+19019796	MS.gene98471:CDS
AGGATGCTGGCCCTTCAGAA+TGG	0.591615	5.4:+19020510	MS.gene98471:CDS
AAGTAGGTCAAGGCATAGGA+AGG	0.603236	5.4:+19019800	MS.gene98471:CDS
ATCCAGCCAAAAGTAGGTCA+AGG	0.604521	5.4:+19019790	MS.gene98471:intron
TCCAAGCTTCAATGACAGGA+TGG	0.614971	5.4:+19020233	MS.gene98471:CDS
AGGAACAAATGTTAGTCATG+GGG	0.621613	5.4:+19020581	MS.gene98471:CDS
GGAACAAATGTTAGTCATGG+GGG	0.626566	5.4:+19020582	MS.gene98471:CDS
TTTGTTGCTGATGAGGATGA+GGG	0.628969	5.4:+19020546	MS.gene98471:CDS
GACGACGGTGTCCGTAACTG+GGG	0.635519	5.4:+19020060	MS.gene98471:CDS
TGAATTGTCACCATTCTGAA+GGG	0.638224	5.4:-19020520	None:intergenic
AAGTTACCTGTTGAAGAGGA+CGG	0.645741	5.4:-19020369	None:intergenic
TAGGCTGCCAAAGCAAAACA+AGG	0.657259	5.4:+19020309	MS.gene98471:intron
AGATACACATATAGGAACTG+TGG	0.658892	5.4:-19019864	None:intergenic
TGTCCTCGGACATACGGACA+AGG	0.659763	5.4:+19020008	MS.gene98471:CDS
ACACCTTGTCCGTATGTCCG+AGG	0.663830	5.4:-19020011	None:intergenic
GAACAAATGTTAGTCATGGG+GGG	0.666834	5.4:+19020583	MS.gene98471:CDS
GTACTGCTGTAACCAACAGG+TGG	0.687537	5.4:+19020115	MS.gene98471:CDS
AGTTGCATTTCGGCCAACAG+AGG	0.693072	5.4:-19020193	None:intergenic
TTTGAATTGAAAGCTGACGA+CGG	0.717213	5.4:+19020045	MS.gene98471:CDS
CTGTTCCCTTGAAACAAGAG+TGG	0.744089	5.4:+19019905	MS.gene98471:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACTTTAAATATGAAAAGCT+GGG	+	chr5.4:19019964-19019983	MS.gene98471:intron	20.0%
!!	TAACTTTAAATATGAAAAGC+TGG	+	chr5.4:19019963-19019982	MS.gene98471:intron	20.0%
!	CTGAATTGAAGAAAATAAAG+AGG	+	chr5.4:19020490-19020509	MS.gene98471:CDS	25.0%
	ATAGGAACAAATGTTAGTCA+TGG	+	chr5.4:19020579-19020598	MS.gene98471:CDS	30.0%
	TAGGAACAAATGTTAGTCAT+GGG	+	chr5.4:19020580-19020599	MS.gene98471:CDS	30.0%
	TGATAACTTTCATATCGTCA+TGG	+	chr5.4:19019678-19019697	MS.gene98471:intron	30.0%
	TTTGGCTGGATAAATCAAAA+GGG	-	chr5.4:19019781-19019800	None:intergenic	30.0%
!!	TTTTGGCTGGATAAATCAAA+AGG	-	chr5.4:19019782-19019801	None:intergenic	30.0%
	AAAAATCTATGTGGTTCAGC+GGG	-	chr5.4:19019738-19019757	None:intergenic	35.0%
	AAAAGGGTAAGCCATAAACT+TGG	-	chr5.4:19019765-19019784	None:intergenic	35.0%
	AGATACACATATAGGAACTG+TGG	-	chr5.4:19019867-19019886	None:intergenic	35.0%
	AGGAACAAATGTTAGTCATG+GGG	+	chr5.4:19020581-19020600	MS.gene98471:CDS	35.0%
	ATCACTGCAATCAAACATGA+TGG	+	chr5.4:19020273-19020292	MS.gene98471:intron	35.0%
	ATGAATTGTCACCATTCTGA+AGG	-	chr5.4:19020524-19020543	None:intergenic	35.0%
	CAAAAATCTATGTGGTTCAG+CGG	-	chr5.4:19019739-19019758	None:intergenic	35.0%
	CATGTTTGATTGCAGTGATT+TGG	-	chr5.4:19020272-19020291	None:intergenic	35.0%
	GAAGAAAATAAAGAGGATGC+TGG	+	chr5.4:19020497-19020516	MS.gene98471:CDS	35.0%
	GATGAGGGAAATACAGTAAT+AGG	+	chr5.4:19020561-19020580	MS.gene98471:CDS	35.0%
	GCAAAATCTCAAGAGGAAAT+CGG	+	chr5.4:19020465-19020484	MS.gene98471:CDS	35.0%
	TGAATTGTCACCATTCTGAA+GGG	-	chr5.4:19020523-19020542	None:intergenic	35.0%
	TGATTTATCCAGCCAAAAGT+AGG	+	chr5.4:19019784-19019803	MS.gene98471:intron	35.0%
	TTTGAATTGAAAGCTGACGA+CGG	+	chr5.4:19020045-19020064	MS.gene98471:CDS	35.0%
!	GATTTTGCAGCAGTAGTAAA+AGG	-	chr5.4:19020453-19020472	None:intergenic	35.0%
!	GCTGAACCACATAGATTTTT+GGG	+	chr5.4:19019738-19019757	MS.gene98471:intron	35.0%
!	TTCATCTTTTGTTGCTGATG+AGG	+	chr5.4:19020539-19020558	MS.gene98471:CDS	35.0%
!!	CAAAAGTACCATTGTTAGCA+CGG	-	chr5.4:19019936-19019955	None:intergenic	35.0%
!!!	GATTTTTGGGTCCAAGTTTA+TGG	+	chr5.4:19019751-19019770	MS.gene98471:intron	35.0%
	AAGCCTACTTTGCAACGTAT+CGG	+	chr5.4:19020093-19020112	MS.gene98471:CDS	40.0%
	AAGTTACCTGTTGAAGAGGA+CGG	-	chr5.4:19020372-19020391	None:intergenic	40.0%
	ACTTTCATATCGTCATGGAC+CGG	+	chr5.4:19019683-19019702	MS.gene98471:intron	40.0%
	CACCTTCAACAGTTGCATTT+CGG	-	chr5.4:19020206-19020225	None:intergenic	40.0%
	CCTCTTCAACAGGTAACTTA+GGG	+	chr5.4:19020373-19020392	MS.gene98471:CDS	40.0%
	CTTGGACCCAAAAATCTATG+TGG	-	chr5.4:19019747-19019766	None:intergenic	40.0%
	GAACAAATGTTAGTCATGGG+GGG	+	chr5.4:19020583-19020602	MS.gene98471:CDS	40.0%
	GCAGCAGTAGTAAAAGGAAA+TGG	-	chr5.4:19020447-19020466	None:intergenic	40.0%
	GCTTTCAATTCAAACAGCTC+CGG	-	chr5.4:19020039-19020058	None:intergenic	40.0%
	GGAACAAATGTTAGTCATGG+GGG	+	chr5.4:19020582-19020601	MS.gene98471:CDS	40.0%
	TACTGCTGCAAAATCTCAAG+AGG	+	chr5.4:19020458-19020477	MS.gene98471:CDS	40.0%
	TCCTCTTCAACAGGTAACTT+AGG	+	chr5.4:19020372-19020391	MS.gene98471:CDS	40.0%
	TGCGACACAGATACACATAT+AGG	-	chr5.4:19019875-19019894	None:intergenic	40.0%
	TTTGTTGCTGATGAGGATGA+GGG	+	chr5.4:19020546-19020565	MS.gene98471:CDS	40.0%
!	ACACACCACTCTTGTTTCAA+GGG	-	chr5.4:19019913-19019932	None:intergenic	40.0%
!	CAAGGCATAGGAAGGTTTTT+AGG	+	chr5.4:19019808-19019827	MS.gene98471:CDS	40.0%
!	CGCTGAACCACATAGATTTT+TGG	+	chr5.4:19019737-19019756	MS.gene98471:intron	40.0%
!	TTTTGTTGCTGATGAGGATG+AGG	+	chr5.4:19020545-19020564	MS.gene98471:CDS	40.0%
!!	GGTACTTTTAAGTCGTACGA+TGG	+	chr5.4:19019829-19019848	MS.gene98471:CDS	40.0%
!!!	ACCAGAACCTTGTTTTGCTT+TGG	-	chr5.4:19020319-19020338	None:intergenic	40.0%
	AAAAGAGGGAACGACATCAG+GGG	-	chr5.4:19019713-19019732	None:intergenic	45.0%
	AAGTAGGTCAAGGCATAGGA+AGG	+	chr5.4:19019800-19019819	MS.gene98471:CDS	45.0%
	ACAAAAGAGGGAACGACATC+AGG	-	chr5.4:19019715-19019734	None:intergenic	45.0%
	ACCATCCTGTCATTGAAGCT+TGG	-	chr5.4:19020237-19020256	None:intergenic	45.0%
	AGGATCTTGTATCCACCTGT+TGG	-	chr5.4:19020130-19020149	None:intergenic	45.0%
	AGGCCAAGTAGGAAGTAGAT+TGG	-	chr5.4:19020400-19020419	None:intergenic	45.0%
	ATCCAGCCAAAAGTAGGTCA+AGG	+	chr5.4:19019790-19019809	MS.gene98471:intron	45.0%
	CAAAAGAGGGAACGACATCA+GGG	-	chr5.4:19019714-19019733	None:intergenic	45.0%
	CAGCAGCAGCAACATTTGTA+TGG	-	chr5.4:19020173-19020192	None:intergenic	45.0%
	CCAAAAGTAGGTCAAGGCAT+AGG	+	chr5.4:19019796-19019815	MS.gene98471:CDS	45.0%
	CCCTAAGTTACCTGTTGAAG+AGG	-	chr5.4:19020376-19020395	None:intergenic	45.0%
	CTGTTCCCTTGAAACAAGAG+TGG	+	chr5.4:19019905-19019924	MS.gene98471:CDS	45.0%
	GCCAAAGCAAAACAAGGTTC+TGG	+	chr5.4:19020315-19020334	MS.gene98471:CDS	45.0%
	GGTCCAATCTACTTCCTACT+TGG	+	chr5.4:19020394-19020413	MS.gene98471:CDS	45.0%
	TAGGCTGCCAAAGCAAAACA+AGG	+	chr5.4:19020309-19020328	MS.gene98471:intron	45.0%
	TCCAAGCTTCAATGACAGGA+TGG	+	chr5.4:19020233-19020252	MS.gene98471:CDS	45.0%
	TGAGATAAGCACCCCAGTTA+CGG	-	chr5.4:19020074-19020093	None:intergenic	45.0%
	TGGTTCCAAGCTTCAATGAC+AGG	+	chr5.4:19020229-19020248	MS.gene98471:CDS	45.0%
!	CCTATGCCTTGACCTACTTT+TGG	-	chr5.4:19019799-19019818	None:intergenic	45.0%
!	GACACACCACTCTTGTTTCA+AGG	-	chr5.4:19019914-19019933	None:intergenic	45.0%
!	GTACCGATACGTTGCAAAGT+AGG	-	chr5.4:19020099-19020118	None:intergenic	45.0%
!	GTGTTCTCGATGAAGGTATG+TGG	+	chr5.4:19019650-19019669	MS.gene98471:intron	45.0%
!	TGATGGTCTTGCTGCTCAAT+AGG	+	chr5.4:19020290-19020309	MS.gene98471:intron	45.0%
!	TGCAACTGTTGAAGGTGTAC+TGG	+	chr5.4:19020209-19020228	MS.gene98471:CDS	45.0%
!!!	AGCTGGGTGTTTTTTGTCAC+AGG	+	chr5.4:19019980-19019999	MS.gene98471:intron	45.0%
!!!	GGTGTTTTTTGTCACAGGTG+TGG	+	chr5.4:19019985-19020004	MS.gene98471:intron	45.0%
	ACATACGGACAAGGTGTGTC+CGG	+	chr5.4:19020017-19020036	MS.gene98471:CDS	50.0%
	AGTTGCATTTCGGCCAACAG+AGG	-	chr5.4:19020196-19020215	None:intergenic	50.0%
	CTCTTACCGTCCTCTTCAAC+AGG	+	chr5.4:19020363-19020382	MS.gene98471:CDS	50.0%
	GAACGACATCAGGGGAAATC+CGG	-	chr5.4:19019705-19019724	None:intergenic	50.0%
	GCAGCAACATTTGTATGGCG+CGG	-	chr5.4:19020168-19020187	None:intergenic	50.0%
	GGCCGAAATGCAACTGTTGA+AGG	+	chr5.4:19020201-19020220	MS.gene98471:CDS	50.0%
	GGTAAGAGATGTACCATGCC+TGG	-	chr5.4:19020351-19020370	None:intergenic	50.0%
	GTACTGCTGTAACCAACAGG+TGG	+	chr5.4:19020115-19020134	MS.gene98471:CDS	50.0%
	TCGGTACTGCTGTAACCAAC+AGG	+	chr5.4:19020112-19020131	MS.gene98471:CDS	50.0%
	TCTACTTCCTACTTGGCCTC+TGG	+	chr5.4:19020401-19020420	MS.gene98471:CDS	50.0%
	TGGTGTGTCCGTGCTAACAA+TGG	+	chr5.4:19019925-19019944	MS.gene98471:intron	50.0%
	TGGTTCAGCGGGACAAAAGA+GGG	-	chr5.4:19019727-19019746	None:intergenic	50.0%
!!	TGCCTTGACCTACTTTTGGC+TGG	-	chr5.4:19019795-19019814	None:intergenic	50.0%
	ACACCTTGTCCGTATGTCCG+AGG	-	chr5.4:19020014-19020033	None:intergenic	55.0%
	AGGATGCTGGCCCTTCAGAA+TGG	+	chr5.4:19020510-19020529	MS.gene98471:CDS	55.0%
	GCAGCACGTGTTCTCGATGA+AGG	+	chr5.4:19019643-19019662	MS.gene98471:CDS	55.0%
	GTGGTTCAGCGGGACAAAAG+AGG	-	chr5.4:19019728-19019747	None:intergenic	55.0%
	GTGTGGTGTCCTCGGACATA+CGG	+	chr5.4:19020002-19020021	MS.gene98471:CDS	55.0%
	TGACGACGGTGTCCGTAACT+GGG	+	chr5.4:19020059-19020078	MS.gene98471:CDS	55.0%
	TGTATGGCGCGGCACAACTA+CGG	-	chr5.4:19020157-19020176	None:intergenic	55.0%
	TGTCACAGGTGTGGTGTCCT+CGG	+	chr5.4:19019994-19020013	MS.gene98471:intron	55.0%
	TGTCCTCGGACATACGGACA+AGG	+	chr5.4:19020008-19020027	MS.gene98471:CDS	55.0%
	CCAAGCACCAGAGGCCAAGT+AGG	-	chr5.4:19020411-19020430	None:intergenic	60.0%
	CCTACTTGGCCTCTGGTGCT+TGG	+	chr5.4:19020408-19020427	MS.gene98471:CDS	60.0%
	CGCGGCACAACTACGGGAAT+AGG	-	chr5.4:19020150-19020169	None:intergenic	60.0%
	CTGACGACGGTGTCCGTAAC+TGG	+	chr5.4:19020058-19020077	MS.gene98471:CDS	60.0%
	CTGGTGCTTGGACTGTCTGC+TGG	+	chr5.4:19020420-19020439	MS.gene98471:CDS	60.0%
	GACGACGGTGTCCGTAACTG+GGG	+	chr5.4:19020060-19020079	MS.gene98471:CDS	60.0%
	GCAGACAGTCCAAGCACCAG+AGG	-	chr5.4:19020420-19020439	None:intergenic	60.0%
	GTATGGCGCGGCACAACTAC+GGG	-	chr5.4:19020156-19020175	None:intergenic	60.0%
	GTTGCTGCTGCTGCCTCTGT+TGG	+	chr5.4:19020180-19020199	MS.gene98471:CDS	60.0%
	TGGTGCGAACTCTCCAGGCA+TGG	+	chr5.4:19020335-19020354	MS.gene98471:CDS	60.0%
!	GGTTCTGGTGCGAACTCTCC+AGG	+	chr5.4:19020330-19020349	MS.gene98471:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	19019641	19020617	19019641	ID=MS.gene98471
chr5.4	mRNA	19019641	19020617	19019641	ID=MS.gene98471.t1;Parent=MS.gene98471
chr5.4	exon	19019641	19019664	19019641	ID=MS.gene98471.t1.exon1;Parent=MS.gene98471.t1
chr5.4	CDS	19019641	19019664	19019641	ID=cds.MS.gene98471.t1;Parent=MS.gene98471.t1
chr5.4	exon	19019796	19019926	19019796	ID=MS.gene98471.t1.exon2;Parent=MS.gene98471.t1
chr5.4	CDS	19019796	19019926	19019796	ID=cds.MS.gene98471.t1;Parent=MS.gene98471.t1
chr5.4	exon	19020002	19020254	19020002	ID=MS.gene98471.t1.exon3;Parent=MS.gene98471.t1
chr5.4	CDS	19020002	19020254	19020002	ID=cds.MS.gene98471.t1;Parent=MS.gene98471.t1
chr5.4	exon	19020312	19020617	19020312	ID=MS.gene98471.t1.exon4;Parent=MS.gene98471.t1
chr5.4	CDS	19020312	19020617	19020312	ID=cds.MS.gene98471.t1;Parent=MS.gene98471.t1

Gene Sequence

>MS.gene98471

ATGCAGCACGTGTTCTCGATGAAGGTATGTGGCTTTATGATAACTTTCATATCGTCATGGACCGGATTTCCCCTGATGTCGTTCCCTCTTTTGTCCCGCTGAACCACATAGATTTTTGGGTCCAAGTTTATGGCTTACCCTTTTGATTTATCCAGCCAAAAGTAGGTCAAGGCATAGGAAGGTTTTTAGGTACTTTTAAGTCGTACGATGGTCGTAATTCAATCCACAGTTCCTATATGTGTATCTGTGTCGCAATTGATGTGACTGTTCCCTTGAAACAAGAGTGGTGTGTCCGTGCTAACAATGGTACTTTTGTTACTGTTAACTTTAAATATGAAAAGCTGGGTGTTTTTTGTCACAGGTGTGGTGTCCTCGGACATACGGACAAGGTGTGTCCGGAGCTGTTTGAATTGAAAGCTGACGACGGTGTCCGTAACTGGGGTGCTTATCTCAAGCCTACTTTGCAACGTATCGGTACTGCTGTAACCAACAGGTGGATACAAGATCCTATTCCCGTAGTTGTGCCGCGCCATACAAATGTTGCTGCTGCTGCCTCTGTTGGCCGAAATGCAACTGTTGAAGGTGTACTGGTTCCAAGCTTCAATGACAGGATGGTAGCTGTACAGAACCAAATCACTGCAATCAAACATGATGGTCTTGCTGCTCAATAGGCTGCCAAAGCAAAACAAGGTTCTGGTGCGAACTCTCCAGGCATGGTACATCTCTTACCGTCCTCTTCAACAGGTAACTTAGGGTCCAATCTACTTCCTACTTGGCCTCTGGTGCTTGGACTGTCTGCTGGTCCATTTCCTTTTACTACTGCTGCAAAATCTCAAGAGGAAATCGGCTCTGAATTGAAGAAAATAAAGAGGATGCTGGCCCTTCAGAATGGTGACAATTCATCTTTTGTTGCTGATGAGGATGAGGGAAATACAGTAATAGGAACAAATGTTAGTCATGGGGGGATGATGATATGA

Protein sequence

>MS.gene98471.t1

MQHVFSMKPKVGQGIGRFLGTFKSYDGRNSIHSSYMCICVAIDVTVPLKQEWCGVLGHTDKVCPELFELKADDGVRNWGAYLKPTLQRIGTAVTNRWIQDPIPVVVPRHTNVAAAASVGRNATVEGVLVPSFNDRMAAKAKQGSGANSPGMVHLLPSSSTGNLGSNLLPTWPLVLGLSAGPFPFTTAAKSQEEIGSELKKIKRMLALQNGDNSSFVADEDEGNTVIGTNVSHGGMMI