AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49057

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49057.t1 MTR_1g036720 57.282 103 44 0 3 105 6 108 2.49e-37 128
MS.gene49057.t1 MTR_0010s0370 49.565 115 57 1 4 117 7 121 1.93e-31 115
MS.gene49057.t1 MTR_0010s0350 49.565 115 57 1 4 117 7 121 1.93e-31 115
MS.gene49057.t1 MTR_2g061500 28.571 112 75 1 5 111 10 121 6.79e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTCAACTGTAACGTTTC+TGG 0.166497 1.3:+69794233 None:intergenic
TCCTAAAGGACGAATTAAAT+TGG 0.168009 1.3:+69794131 None:intergenic
CAACGAAAATGGCAGAATTT+TGG 0.190929 1.3:-69794884 MS.gene49057:CDS
CTTTGCGCAGGTGTGTTATC+TGG 0.206826 1.3:+69794720 None:intergenic
TCTCTTCATGAGGTGATAAA+TGG 0.229010 1.3:+69794088 None:intergenic
ACCTCATGAAGAGACTTTAT+TGG 0.263869 1.3:-69794079 MS.gene49057:CDS
GTCATCATGTGCCCTCTAAT+TGG 0.284195 1.3:+69794906 None:intergenic
CAGATGATGGATTAAGATAC+TGG 0.300286 1.3:-69794365 MS.gene49057:CDS
CGGTCACGTGCTGAATTAAT+TGG 0.309753 1.3:-69794018 MS.gene49057:CDS
TTGATATTAACCCCTCTTCC+TGG 0.311044 1.3:+69794858 None:intergenic
CCCAATTTAATTCGTCCTTT+AGG 0.314734 1.3:-69794132 MS.gene49057:CDS
GCACATGATGACAACGAAAA+TGG 0.363689 1.3:-69794895 MS.gene49057:CDS
CTTACTGATAAACCAATTAG+AGG 0.375750 1.3:-69794918 MS.gene49057:CDS
GCAGAGGTTCTCGCTGGCTC+CGG 0.388303 1.3:-69794305 MS.gene49057:CDS
GTTCCTCCTCTTCGTCACTT+AGG 0.390268 1.3:+69795009 None:intergenic
TTCCTCCTCTTCGTCACTTA+GGG 0.391799 1.3:+69795010 None:intergenic
AATTTGAATGTGAAAAGGTT+TGG 0.399065 1.3:+69794825 None:intergenic
CTTGTGTCAGCAGTATTGTT+AGG 0.406931 1.3:+69794963 None:intergenic
CTCTAATTGGTTTATCAGTA+AGG 0.407046 1.3:+69794919 None:intergenic
CCTAAAGGACGAATTAAATT+GGG 0.413621 1.3:+69794132 None:intergenic
GACACAAGTGCTTGTCTTGT+GGG 0.419038 1.3:-69794948 MS.gene49057:CDS
CTGGCTCCGGGAGGAAGGCC+AGG 0.433495 1.3:-69794292 MS.gene49057:CDS
TGGTTTGCATATCACGGAAA+TGG 0.438112 1.3:+69794799 None:intergenic
CCTCTTCGTCACTTAGGGAT+AGG 0.439494 1.3:+69795015 None:intergenic
GGAAGAATTTGAATGTGAAA+AGG 0.442727 1.3:+69794820 None:intergenic
CAGAGGTTCTCGCTGGCTCC+GGG 0.448953 1.3:-69794304 MS.gene49057:CDS
CTCTTCATGAGGTGATAAAT+GGG 0.456893 1.3:+69794089 None:intergenic
TTAAATTGGGATTCTTCAGC+AGG 0.458575 1.3:+69794145 None:intergenic
ACCACTCCTGGCCTTCCTCC+CGG 0.465960 1.3:+69794286 None:intergenic
TTGTTAGGAATATCCTCAAT+TGG 0.466496 1.3:+69794978 None:intergenic
GGAAAGTACTTCAACAATCC+AGG 0.470097 1.3:-69794052 MS.gene49057:CDS
GTAACGTTTCTGGCCGCCCT+TGG 0.476205 1.3:+69794243 None:intergenic
GTCTGTTTAATGCATCCTAA+AGG 0.476805 1.3:+69794117 None:intergenic
TTTGCGCAGGTGTGTTATCT+GGG 0.479680 1.3:+69794721 None:intergenic
CACCGTCAGCTTCGATGCCA+AGG 0.479744 1.3:-69794260 MS.gene49057:CDS
TCTCGCTGGCTCCGGGAGGA+AGG 0.480967 1.3:-69794297 MS.gene49057:CDS
TCGTCACTTAGGGATAGGTT+TGG 0.487764 1.3:+69795020 None:intergenic
TTTGCTTGAACAACCTCCAT+TGG 0.489998 1.3:+69793907 None:intergenic
GCAAAACCGTCCTCTTCTGC+CGG 0.496001 1.3:-69793870 MS.gene49057:CDS
TGAAGAGACTTTATTGGAGG+AGG 0.502674 1.3:-69794073 MS.gene49057:CDS
TGACACAAGTGCTTGTCTTG+TGG 0.505896 1.3:-69794949 MS.gene49057:CDS
GATTCTTCAGCAGGTCAGCT+AGG 0.508161 1.3:+69794154 None:intergenic
AGGAAGAGGGGTTAATATCA+AGG 0.509402 1.3:-69794856 MS.gene49057:CDS
TGAATCCTCACCTGTCAAAA+CGG 0.511410 1.3:-69794181 MS.gene49057:CDS
TGAGAATGGTTTGCATATCA+CGG 0.519519 1.3:+69794793 None:intergenic
CTGACGGTGGTAACCACTCC+TGG 0.526065 1.3:+69794274 None:intergenic
TGTTATCTGGGAGAGTATTG+AGG 0.534936 1.3:+69794733 None:intergenic
GGAGAGTATTGAGGATCAGT+AGG 0.538423 1.3:+69794742 None:intergenic
TCATGAAGAGACTTTATTGG+AGG 0.541631 1.3:-69794076 MS.gene49057:CDS
CAAAACCGTCCTCTTCTGCC+GGG 0.555484 1.3:-69793869 MS.gene49057:CDS
TATTCGGTAGACTCAGATGA+TGG 0.559891 1.3:-69794378 MS.gene49057:intron
ACCGTCAGCTTCGATGCCAA+GGG 0.561086 1.3:-69794259 MS.gene49057:CDS
CAAAGCAGTAAGTGATGGTG+TGG 0.561122 1.3:+69793960 None:intergenic
GGAACTCGAAATTCCAATTG+AGG 0.564851 1.3:-69794991 MS.gene49057:CDS
AGATGATGGATTAAGATACT+GGG 0.567295 1.3:-69794364 MS.gene49057:CDS
TTACTGATAAACCAATTAGA+GGG 0.570058 1.3:-69794917 MS.gene49057:CDS
ACTTAGGGATAGGTTTGGCA+TGG 0.570217 1.3:+69795025 None:intergenic
GCTATAACATTCATGACTCC+CGG 0.572817 1.3:+69793851 None:intergenic
CAATCCAGGGTAATACAAAA+CGG 0.573232 1.3:-69794038 MS.gene49057:CDS
TTCATGACTCCCGGCAGAAG+AGG 0.576524 1.3:+69793860 None:intergenic
TCCGGGAGGAAGGCCAGGAG+TGG 0.581253 1.3:-69794287 MS.gene49057:CDS
TGTAGAGGCACACTTTGCGC+AGG 0.583748 1.3:+69794708 None:intergenic
GCCCTTGGCATCGAAGCTGA+CGG 0.587549 1.3:+69794258 None:intergenic
TCCAATAAAGTCTCTTCATG+AGG 0.602168 1.3:+69794078 None:intergenic
CAATACTCAGTCAACACCAA+TGG 0.604425 1.3:-69793923 MS.gene49057:CDS
ACGAAGGCAGAGGTTCTCGC+TGG 0.605120 1.3:-69794311 MS.gene49057:CDS
TGACTCCCGGCAGAAGAGGA+CGG 0.608463 1.3:+69793864 None:intergenic
GTCAGCTTCGATGCCAAGGG+CGG 0.609448 1.3:-69794256 MS.gene49057:CDS
GAAAGTACTTCAACAATCCA+GGG 0.609461 1.3:-69794051 MS.gene49057:CDS
ATCCCTAAGTGACGAAGAGG+AGG 0.619327 1.3:-69795012 MS.gene49057:CDS
TACTCAGTCAACACCAATGG+AGG 0.622045 1.3:-69793920 MS.gene49057:CDS
ACACAAGTGCTTGTCTTGTG+GGG 0.628413 1.3:-69794947 MS.gene49057:CDS
AAACTGAAGAACGAAGGCAG+AGG 0.647380 1.3:-69794321 MS.gene49057:CDS
AGGTTCTCGCTGGCTCCGGG+AGG 0.649071 1.3:-69794301 MS.gene49057:CDS
GTTGACCAGATAAACAGTAA+CGG 0.656551 1.3:-69794219 MS.gene49057:CDS
AAAGCAGTAAGTGATGGTGT+GGG 0.661018 1.3:+69793961 None:intergenic
CCTATCCCTAAGTGACGAAG+AGG 0.662777 1.3:-69795015 MS.gene49057:CDS
GATGATGGATTAAGATACTG+GGG 0.666377 1.3:-69794363 MS.gene49057:CDS
CTTGGCATCGAAGCTGACGG+TGG 0.683357 1.3:+69794261 None:intergenic
TGTTGCAAAGCAGTAAGTGA+TGG 0.707455 1.3:+69793955 None:intergenic
AGGTTGTTGTCAAAGTACCA+AGG 0.719247 1.3:+69794762 None:intergenic
AAGCAGTAAGTGATGGTGTG+GGG 0.725643 1.3:+69793962 None:intergenic
ATGATGGATTAAGATACTGG+GGG 0.736995 1.3:-69794362 MS.gene49057:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATTTGAATGTGAAAAGGTT+TGG + chr1.3:69794062-69794081 None:intergenic 25.0%
! TTACTGATAAACCAATTAGA+GGG - chr1.3:69793967-69793986 MS.gene49057:CDS 25.0%
! TTATTGTGACAAACTGTATT+CGG - chr1.3:69794490-69794509 MS.gene49057:intron 25.0%
ATGCAAACCATTCTCAAAAA+AGG - chr1.3:69794098-69794117 MS.gene49057:CDS 30.0%
CCTAAAGGACGAATTAAATT+GGG + chr1.3:69794755-69794774 None:intergenic 30.0%
CTTACTGATAAACCAATTAG+AGG - chr1.3:69793966-69793985 MS.gene49057:CDS 30.0%
GGAAGAATTTGAATGTGAAA+AGG + chr1.3:69794067-69794086 None:intergenic 30.0%
TCCTAAAGGACGAATTAAAT+TGG + chr1.3:69794756-69794775 None:intergenic 30.0%
TTGGAGTATGATGTCAAAAA+CGG - chr1.3:69794293-69794312 MS.gene49057:CDS 30.0%
TTGTTAGGAATATCCTCAAT+TGG + chr1.3:69793909-69793928 None:intergenic 30.0%
! CATATATGATCTGAGATGAT+TGG + chr1.3:69794321-69794340 None:intergenic 30.0%
! CTCTAATTGGTTTATCAGTA+AGG + chr1.3:69793968-69793987 None:intergenic 30.0%
!! AGATGATGGATTAAGATACT+GGG - chr1.3:69794520-69794539 MS.gene49057:intron 30.0%
!! CTTTTGTCTTTTGAGTGATT+TGG + chr1.3:69794369-69794388 None:intergenic 30.0%
AAATTCAAGTACGAACGTCT+AGG - chr1.3:69794425-69794444 MS.gene49057:intron 35.0%
ACCTCATGAAGAGACTTTAT+TGG - chr1.3:69794805-69794824 MS.gene49057:CDS 35.0%
ATCATGAATACGAACCCAAA+AGG + chr1.3:69794210-69794229 None:intergenic 35.0%
CAAAAGAAAATCAGACGTAC+AGG - chr1.3:69794383-69794402 MS.gene49057:intron 35.0%
CAATCCAGGGTAATACAAAA+CGG - chr1.3:69794846-69794865 MS.gene49057:CDS 35.0%
CCCAATTTAATTCGTCCTTT+AGG - chr1.3:69794752-69794771 MS.gene49057:CDS 35.0%
CTCTTCATGAGGTGATAAAT+GGG + chr1.3:69794798-69794817 None:intergenic 35.0%
GAATTTCATTGGCGAATTCT+TGG - chr1.3:69794274-69794293 MS.gene49057:CDS 35.0%
GGTAATTTCTGTTACTACTG+TGG - chr1.3:69794446-69794465 MS.gene49057:intron 35.0%
GTCTGTTTAATGCATCCTAA+AGG + chr1.3:69794770-69794789 None:intergenic 35.0%
GTTGACCAGATAAACAGTAA+CGG - chr1.3:69794665-69794684 MS.gene49057:intron 35.0%
TCATGAAGAGACTTTATTGG+AGG - chr1.3:69794808-69794827 MS.gene49057:CDS 35.0%
TCATGAATACGAACCCAAAA+GGG + chr1.3:69794209-69794228 None:intergenic 35.0%
TCCAATAAAGTCTCTTCATG+AGG + chr1.3:69794809-69794828 None:intergenic 35.0%
TCTCTTCATGAGGTGATAAA+TGG + chr1.3:69794799-69794818 None:intergenic 35.0%
TTAAATTGGGATTCTTCAGC+AGG + chr1.3:69794742-69794761 None:intergenic 35.0%
! CAACGAAAATGGCAGAATTT+TGG - chr1.3:69794000-69794019 MS.gene49057:CDS 35.0%
! CTTTTCCGTTACTGTTTATC+TGG + chr1.3:69794673-69794692 None:intergenic 35.0%
! TCTACAATCAGTACCCTTTT+GGG - chr1.3:69794193-69794212 MS.gene49057:CDS 35.0%
! TGAGAATGGTTTGCATATCA+CGG + chr1.3:69794094-69794113 None:intergenic 35.0%
!! ATGATGGATTAAGATACTGG+GGG - chr1.3:69794522-69794541 MS.gene49057:intron 35.0%
!! CAGATGATGGATTAAGATAC+TGG - chr1.3:69794519-69794538 MS.gene49057:intron 35.0%
!! GAAAGTACTTCAACAATCCA+GGG - chr1.3:69794833-69794852 MS.gene49057:CDS 35.0%
!! GATGATGGATTAAGATACTG+GGG - chr1.3:69794521-69794540 MS.gene49057:intron 35.0%
AAACACCTGGGGAATTTCAT+TGG - chr1.3:69794263-69794282 MS.gene49057:CDS 40.0%
AAGAAAATCAGACGTACAGG+AGG - chr1.3:69794386-69794405 MS.gene49057:intron 40.0%
AGAAAATCAGACGTACAGGA+GGG - chr1.3:69794387-69794406 MS.gene49057:intron 40.0%
AGGAAGAGGGGTTAATATCA+AGG - chr1.3:69794028-69794047 MS.gene49057:CDS 40.0%
CAATACTCAGTCAACACCAA+TGG - chr1.3:69794961-69794980 MS.gene49057:CDS 40.0%
CCATTCTCAAAAAAGGTCCT+TGG - chr1.3:69794105-69794124 MS.gene49057:CDS 40.0%
CGTATTCATGATGTTCCTGT+TGG - chr1.3:69794218-69794237 MS.gene49057:CDS 40.0%
CTTGTGTCAGCAGTATTGTT+AGG + chr1.3:69793924-69793943 None:intergenic 40.0%
CTTTCTGTCATAAAGCCAAC+AGG + chr1.3:69794236-69794255 None:intergenic 40.0%
GCACATGATGACAACGAAAA+TGG - chr1.3:69793989-69794008 MS.gene49057:CDS 40.0%
GCTTTATGACAGAAAGAGTG+GGG - chr1.3:69794240-69794259 MS.gene49057:CDS 40.0%
GGAACTCGAAATTCCAATTG+AGG - chr1.3:69793893-69793912 MS.gene49057:CDS 40.0%
GTCGAAAAACTGAAGAACGA+AGG - chr1.3:69794557-69794576 MS.gene49057:intron 40.0%
TATTCGGTAGACTCAGATGA+TGG - chr1.3:69794506-69794525 MS.gene49057:intron 40.0%
TGAAGAGACTTTATTGGAGG+AGG - chr1.3:69794811-69794830 MS.gene49057:CDS 40.0%
TGAATCCTCACCTGTCAAAA+CGG - chr1.3:69794703-69794722 MS.gene49057:intron 40.0%
TGTCACAATAATCCTCGATG+TGG + chr1.3:69794481-69794500 None:intergenic 40.0%
TGTTGCAAAGCAGTAAGTGA+TGG + chr1.3:69794932-69794951 None:intergenic 40.0%
TTGATATTAACCCCTCTTCC+TGG + chr1.3:69794029-69794048 None:intergenic 40.0%
TTTGCTTGAACAACCTCCAT+TGG + chr1.3:69794980-69794999 None:intergenic 40.0%
! AAAGCAGTAAGTGATGGTGT+GGG + chr1.3:69794926-69794945 None:intergenic 40.0%
! AGGTTGTTGTCAAAGTACCA+AGG + chr1.3:69794125-69794144 None:intergenic 40.0%
! CTCTACAATCAGTACCCTTT+TGG - chr1.3:69794192-69794211 MS.gene49057:CDS 40.0%
! GGCTTTATGACAGAAAGAGT+GGG - chr1.3:69794239-69794258 MS.gene49057:CDS 40.0%
! TGGTTTGCATATCACGGAAA+TGG + chr1.3:69794088-69794107 None:intergenic 40.0%
!! AATTTTGGCATCCAGGAAGA+GGG - chr1.3:69794015-69794034 MS.gene49057:CDS 40.0%
!! CAAAAGGGTACTGATTGTAG+AGG + chr1.3:69794194-69794213 None:intergenic 40.0%
!! GGAAAGTACTTCAACAATCC+AGG - chr1.3:69794832-69794851 MS.gene49057:CDS 40.0%
!! TGGCTTTATGACAGAAAGAG+TGG - chr1.3:69794238-69794257 MS.gene49057:CDS 40.0%
!! TGTTATCTGGGAGAGTATTG+AGG + chr1.3:69794154-69794173 None:intergenic 40.0%
!!! CCAAGGACCTTTTTTGAGAA+TGG + chr1.3:69794108-69794127 None:intergenic 40.0%
AAACTGAAGAACGAAGGCAG+AGG - chr1.3:69794563-69794582 MS.gene49057:intron 45.0%
ACACAAGTGCTTGTCTTGTG+GGG - chr1.3:69793937-69793956 MS.gene49057:CDS 45.0%
ATTCGCCAATGAAATTCCCC+AGG + chr1.3:69794271-69794290 None:intergenic 45.0%
CGGTCACGTGCTGAATTAAT+TGG - chr1.3:69794866-69794885 MS.gene49057:CDS 45.0%
CTGGTCAACTGTAACGTTTC+TGG + chr1.3:69794654-69794673 None:intergenic 45.0%
GAAAATCAGACGTACAGGAG+GGG - chr1.3:69794388-69794407 MS.gene49057:intron 45.0%
GACACAAGTGCTTGTCTTGT+GGG - chr1.3:69793936-69793955 MS.gene49057:CDS 45.0%
GTCATCATGTGCCCTCTAAT+TGG + chr1.3:69793981-69794000 None:intergenic 45.0%
TACTCAGTCAACACCAATGG+AGG - chr1.3:69794964-69794983 MS.gene49057:CDS 45.0%
TCGTCACTTAGGGATAGGTT+TGG + chr1.3:69793867-69793886 None:intergenic 45.0%
TGACACAAGTGCTTGTCTTG+TGG - chr1.3:69793935-69793954 MS.gene49057:CDS 45.0%
TGTTACTACTGTGGAGCTCT+AGG - chr1.3:69794455-69794474 MS.gene49057:intron 45.0%
TTCCTCCTCTTCGTCACTTA+GGG + chr1.3:69793877-69793896 None:intergenic 45.0%
TTTGCGCAGGTGTGTTATCT+GGG + chr1.3:69794166-69794185 None:intergenic 45.0%
! AAGCAGTAAGTGATGGTGTG+GGG + chr1.3:69794925-69794944 None:intergenic 45.0%
! ACGGTTTTGCTAGAAGAGGA+CGG + chr1.3:69795004-69795023 None:intergenic 45.0%
! CAAAGCAGTAAGTGATGGTG+TGG + chr1.3:69794927-69794946 None:intergenic 45.0%
! GTGACCGTTTTGTATTACCC+TGG + chr1.3:69794853-69794872 None:intergenic 45.0%
!! AGTTTTTCGACGCGTAACTC+AGG + chr1.3:69794548-69794567 None:intergenic 45.0%
!! ATGGCAGAATTTTGGCATCC+AGG - chr1.3:69794008-69794027 MS.gene49057:CDS 45.0%
!! ATTTTGGCATCCAGGAAGAG+GGG - chr1.3:69794016-69794035 MS.gene49057:CDS 45.0%
!! GAATTTTGGCATCCAGGAAG+AGG - chr1.3:69794014-69794033 MS.gene49057:CDS 45.0%
!! GGAGAGTATTGAGGATCAGT+AGG + chr1.3:69794145-69794164 None:intergenic 45.0%
AAAGAGTGGGGAAACACCTG+GGG - chr1.3:69794252-69794271 MS.gene49057:CDS 50.0%
AGAAAGAGTGGGGAAACACC+TGG - chr1.3:69794250-69794269 MS.gene49057:CDS 50.0%
ATCCCTAAGTGACGAAGAGG+AGG - chr1.3:69793872-69793891 MS.gene49057:CDS 50.0%
CCTATCCCTAAGTGACGAAG+AGG - chr1.3:69793869-69793888 MS.gene49057:CDS 50.0%
CCTCTTCGTCACTTAGGGAT+AGG + chr1.3:69793872-69793891 None:intergenic 50.0%
CTTTGCGCAGGTGTGTTATC+TGG + chr1.3:69794167-69794186 None:intergenic 50.0%
GAAAGAGTGGGGAAACACCT+GGG - chr1.3:69794251-69794270 MS.gene49057:CDS 50.0%
GATTCTTCAGCAGGTCAGCT+AGG + chr1.3:69794733-69794752 None:intergenic 50.0%
GTTCCTCCTCTTCGTCACTT+AGG + chr1.3:69793878-69793897 None:intergenic 50.0%
! GAGGACGGTTTTGCTAGAAG+AGG + chr1.3:69795008-69795027 None:intergenic 50.0%
ACCGTCAGCTTCGATGCCAA+GGG - chr1.3:69794625-69794644 MS.gene49057:intron 55.0%
CAAAACCGTCCTCTTCTGCC+GGG - chr1.3:69795015-69795034 MS.gene49057:CDS 55.0%
GCAAAACCGTCCTCTTCTGC+CGG - chr1.3:69795014-69795033 MS.gene49057:CDS 55.0%
! TGTAGAGGCACACTTTGCGC+AGG + chr1.3:69794179-69794198 None:intergenic 55.0%
!! GCTAGGCTGACCGTTTTGAC+AGG + chr1.3:69794716-69794735 None:intergenic 55.0%
!! GCTGACCGTTTTGACAGGTG+AGG + chr1.3:69794711-69794730 None:intergenic 55.0%
ACGAAGGCAGAGGTTCTCGC+TGG - chr1.3:69794573-69794592 MS.gene49057:intron 60.0%
CACCGTCAGCTTCGATGCCA+AGG - chr1.3:69794624-69794643 MS.gene49057:intron 60.0%
CTGACGGTGGTAACCACTCC+TGG + chr1.3:69794613-69794632 None:intergenic 60.0%
GTCAGCTTCGATGCCAAGGG+CGG - chr1.3:69794628-69794647 MS.gene49057:intron 60.0%
TGACTCCCGGCAGAAGAGGA+CGG + chr1.3:69795023-69795042 None:intergenic 60.0%
! CTTGGCATCGAAGCTGACGG+TGG + chr1.3:69794626-69794645 None:intergenic 60.0%
! GCCCTTGGCATCGAAGCTGA+CGG + chr1.3:69794629-69794648 None:intergenic 60.0%
!! GTAACGTTTCTGGCCGCCCT+TGG + chr1.3:69794644-69794663 None:intergenic 60.0%
!! TGGAGCTCTAGGCCACATCG+AGG - chr1.3:69794466-69794485 MS.gene49057:intron 60.0%
! ACCACTCCTGGCCTTCCTCC+CGG + chr1.3:69794601-69794620 None:intergenic 65.0%
!! CAGAGGTTCTCGCTGGCTCC+GGG - chr1.3:69794580-69794599 MS.gene49057:intron 65.0%
!! GCAGAGGTTCTCGCTGGCTC+CGG - chr1.3:69794579-69794598 MS.gene49057:intron 65.0%
TCCGGGAGGAAGGCCAGGAG+TGG - chr1.3:69794597-69794616 MS.gene49057:intron 70.0%
!! AGGTTCTCGCTGGCTCCGGG+AGG - chr1.3:69794583-69794602 MS.gene49057:intron 70.0%
!! TCTCGCTGGCTCCGGGAGGA+AGG - chr1.3:69794587-69794606 MS.gene49057:intron 70.0%
CTGGCTCCGGGAGGAAGGCC+AGG - chr1.3:69794592-69794611 MS.gene49057:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 69793861 69795045 69793861 ID=MS.gene49057
chr1.3 mRNA 69793861 69795045 69793861 ID=MS.gene49057.t1;Parent=MS.gene49057
chr1.3 exon 69794721 69795045 69794721 ID=MS.gene49057.t1.exon1;Parent=MS.gene49057.t1
chr1.3 CDS 69794721 69795045 69794721 ID=cds.MS.gene49057.t1;Parent=MS.gene49057.t1
chr1.3 exon 69793861 69794390 69793861 ID=MS.gene49057.t1.exon2;Parent=MS.gene49057.t1
chr1.3 CDS 69793861 69794390 69793861 ID=cds.MS.gene49057.t1;Parent=MS.gene49057.t1
Gene Sequence

>MS.gene49057

ATGCCAAACCTATCCCTAAGTGACGAAGAGGAGGAACTCGAAATTCCAATTGAGGATATTCCTAACAATACTGCTGACACAAGTGCTTGTCTTGTGGGGAAATTCCTTACTGATAAACCAATTAGAGGGCACATGATGACAACGAAAATGGCAGAATTTTGGCATCCAGGAAGAGGGGTTAATATCAAGGAAATTGAGCCAAACCTTTTCACATTCAAATTCTTCCATTTCCGTGATATGCAAACCATTCTCAAAAAAGGTCCTTGGTACTTTGACAACAACCTACTGATCCTCAATACTCTCCCAGATAACACACCTGCGCAAAGTGTGCCTCTACAATCAGTACCCTTTTGGGTTCGTATTCATGATGTTCCTGTTGGCTTTATGACAGAAAGAGTGGGGAAACACCTGGGGAATTTCATTGGCGAATTCTTGGAGTATGATGTCAAAAACGGCGCCAATCATCTCAGATCATATATGCGCATATGAGTGCTGCTTGACGTTTCCAAATCACTCAAAAGACAAAAGAAAATCAGACGTACAGGAGGGGACTCGCAAATTGTCAAATTCAAGTACGAACGTCTAGGTAATTTCTGTTACTACTGTGGAGCTCTAGGCCACATCGAGGATTATTGTGACAAACTGTATTCGGTAGACTCAGATGATGGATTAAGATACTGGGGGCCTGAGTTACGCGTCGAAAAACTGAAGAACGAAGGCAGAGGTTCTCGCTGGCTCCGGGAGGAAGGCCAGGAGTGGTTACCACCGTCAGCTTCGATGCCAAGGGCGGCCAGAAACGTTACAGTTGACCAGATAAACAGTAACGGAAAAGCATTAATTTTTGAATCCTCACCTGTCAAAACGGTCAGCCTAGCTGACCTGCTGAAGAATCCCAATTTAATTCGTCCTTTAGGATGCATTAAACAGACAGAATCCCATTTATCACCTCATGAAGAGACTTTATTGGAGGAGGAAAGTACTTCAACAATCCAGGGTAATACAAAACGGTCACGTGCTGAATTAATTGGAGCTTCTTTGTCTGCTGACTCATCATTTGTGCGCCCCACACCATCACTTACTGCTTTGCAACATGAAAAAAGCAATACTCAGTCAACACCAATGGAGGTTGTTCAAGCAAAACCGTCCTCTTCTAGCAAAACCGTCCTCTTCTGCCGGGAGTCATGA
Protein sequence

>MS.gene49057.t1

MPNLSLSDEEEELEIPIEDIPNNTADTSACLVGKFLTDKPIRGHMMTTKMAEFWHPGRGVNIKEIEPNLFTFKFFHFRDMQTILKKGPWYFDNNLLILNTLPDNTPAQNSDDGLRYWGPELRVEKLKNEGRGSRWLREEGQEWLPPSASMPRAARNVTVDQINSNGKALIFESSPVKTVSLADLLKNPNLIRPLGCIKQTESHLSPHEETLLEEESTSTIQGNTKRSRAELIGASLSADSSFVRPTPSLTALQHEKSNTQSTPMEVVQAKPSSSSKTVLFCRES