Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013676.t1 | XP_024630779.1 | 43 | 344 | 88 | 3 | 1 | 241 | 1 | 339 | 4.20E-61 | 245 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013676.t1 | A0A396JIW9 | 40.1 | 372 | 116 | 6 | 1 | 267 | 1 | 370 | 1.1e-53 | 219.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013676.t1 | MTR_0010s0370 | 72.358 | 123 | 34 | 0 | 1 | 123 | 1 | 123 | 7.15e-62 | 194 |
| MS.gene013676.t1 | MTR_0010s0350 | 72.358 | 123 | 34 | 0 | 1 | 123 | 1 | 123 | 7.15e-62 | 194 |
| MS.gene013676.t1 | MTR_1g036720 | 71.171 | 111 | 32 | 0 | 1 | 111 | 1 | 111 | 9.36e-54 | 170 |
| MS.gene013676.t1 | MTR_1g051330 | 64.394 | 132 | 47 | 0 | 148 | 279 | 20 | 151 | 2.04e-45 | 163 |
| MS.gene013676.t1 | MTR_1g036710 | 41.905 | 105 | 51 | 2 | 128 | 229 | 63 | 160 | 3.70e-17 | 80.1 |
| MS.gene013676.t1 | MTR_2g061500 | 34.409 | 93 | 61 | 0 | 34 | 126 | 36 | 128 | 2.59e-13 | 66.2 |
| MS.gene013676.t1 | MTR_3g053920 | 31.915 | 94 | 64 | 0 | 33 | 126 | 35 | 128 | 1.38e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCAATTTGCCCCATTC+TGG | 0.182081 | 3.3:-75428654 | MS.gene013676:CDS |
| GATTATGCCATTGTTGATTT+TGG | 0.205400 | 3.3:+75428102 | None:intergenic |
| AGTACCACGGGCCCTTCTTT+AGG | 0.279703 | 3.3:+75428737 | None:intergenic |
| AGGATGATGGCACACGACTA+TGG | 0.305531 | 3.3:-75428327 | MS.gene013676:CDS |
| TGCAGAGGTGTTCTCATTGC+AGG | 0.311234 | 3.3:+75427886 | None:intergenic |
| GATCCTCGCCTCTGCCTTGT+TGG | 0.331565 | 3.3:-75428910 | MS.gene013676:CDS |
| TTTAAGCCTCTAGAACGTTT+TGG | 0.335560 | 3.3:+75428016 | None:intergenic |
| TGGAAACGATAGAGACCTTC+TGG | 0.340204 | 3.3:-75428846 | MS.gene013676:CDS |
| GGCCCTTCTTTAGGATTCTC+TGG | 0.365353 | 3.3:+75428746 | None:intergenic |
| AGTCAATACGGAGCTGTTAC+AGG | 0.366760 | 3.3:-75428071 | MS.gene013676:CDS |
| TTTGTTATTAATTGTATTGA+AGG | 0.366911 | 3.3:+75427979 | None:intergenic |
| GTGTGAGGGCTTCGTCGATC+TGG | 0.368163 | 3.3:+75428941 | None:intergenic |
| CTCGCCGTCAATCAGAATTC+GGG | 0.373416 | 3.3:-75428255 | MS.gene013676:CDS |
| GCTCGCCGTCAATCAGAATT+CGG | 0.378069 | 3.3:-75428256 | MS.gene013676:CDS |
| ATTTGCCCCATTCTGGATAC+AGG | 0.379704 | 3.3:-75428647 | MS.gene013676:intron |
| AATCGAGGTGGTGTGCAAAT+TGG | 0.392884 | 3.3:+75428770 | None:intergenic |
| AATTGAAGGGCAACTTGGTT+AGG | 0.399290 | 3.3:+75428667 | None:intergenic |
| TGGTTAGGAGCAGTATTCTC+TGG | 0.399461 | 3.3:+75428682 | None:intergenic |
| ATCATCATATATGACCGAAT+TGG | 0.403084 | 3.3:+75428868 | None:intergenic |
| CTGGGATCACATTGAGGATC+AGG | 0.418784 | 3.3:+75428701 | None:intergenic |
| TTCACACAAACAAGCCAATT+CGG | 0.419848 | 3.3:-75428882 | MS.gene013676:CDS |
| ATAGGCCTGGCTCTATCTCT+TGG | 0.434596 | 3.3:+75428800 | None:intergenic |
| CATGCACCTGTATCCAGAAT+GGG | 0.472692 | 3.3:+75428641 | None:intergenic |
| TCCAGAATGGGGCAAATTGA+AGG | 0.483650 | 3.3:+75428653 | None:intergenic |
| CCTCATCACTGAGGGAAAGT+TGG | 0.485135 | 3.3:+75428980 | None:intergenic |
| AAAATCCAAGAGATAGAGCC+AGG | 0.490259 | 3.3:-75428805 | MS.gene013676:CDS |
| GTGCAAATTGGAAGGTGAAT+AGG | 0.493892 | 3.3:+75428782 | None:intergenic |
| GGGCAAATTGAAGGGCAACT+TGG | 0.494299 | 3.3:+75428662 | None:intergenic |
| AATCAATAACTCAGTCAATA+CGG | 0.499775 | 3.3:-75428083 | MS.gene013676:CDS |
| TCATGCACCTGTATCCAGAA+TGG | 0.505879 | 3.3:+75428640 | None:intergenic |
| GGATGATGGCACACGACTAT+GGG | 0.511194 | 3.3:-75428326 | MS.gene013676:CDS |
| TTGGCTTGTTTGTGTGAAAA+CGG | 0.519984 | 3.3:+75428887 | None:intergenic |
| TATTAATTGTATTGAAGGAC+TGG | 0.520039 | 3.3:+75427984 | None:intergenic |
| AATTCGGTCATATATGATGA+TGG | 0.525605 | 3.3:-75428866 | MS.gene013676:CDS |
| ATGTGCTAAGGCTGCAGAGT+TGG | 0.530202 | 3.3:+75428156 | None:intergenic |
| ATTTCTGCCTCGTTAACTGC+AGG | 0.531682 | 3.3:+75427950 | None:intergenic |
| AATTGGAAGGTGAATAGGCC+TGG | 0.533003 | 3.3:+75428787 | None:intergenic |
| TTTCCAGAGAATCCTAAAGA+AGG | 0.533702 | 3.3:-75428749 | MS.gene013676:CDS |
| CATCACTGAGGGAAAGTTGG+TGG | 0.544634 | 3.3:+75428983 | None:intergenic |
| GGTTAGGAGCAGTATTCTCT+GGG | 0.546869 | 3.3:+75428683 | None:intergenic |
| TTGGCTGGACGCATTAATTG+TGG | 0.548346 | 3.3:+75428121 | None:intergenic |
| GCAGCAGTTACAGTTTCAAA+CGG | 0.560023 | 3.3:-75428214 | MS.gene013676:CDS |
| GAGGATCATCTGTCTGTGTG+AGG | 0.568745 | 3.3:+75428926 | None:intergenic |
| AGGATCATCTGTCTGTGTGA+GGG | 0.571450 | 3.3:+75428927 | None:intergenic |
| TTTGAAACTGTAACTGCTGC+CGG | 0.577227 | 3.3:+75428217 | None:intergenic |
| TACTCGGCTGATGAGGATGA+TGG | 0.578869 | 3.3:-75428340 | MS.gene013676:intron |
| ACCTTCTGGAATCCTGTCAA+AGG | 0.580850 | 3.3:-75428832 | MS.gene013676:CDS |
| TTCGTTCTCCTCATCACTGA+GGG | 0.583353 | 3.3:+75428972 | None:intergenic |
| CCAGAATGGGGCAAATTGAA+GGG | 0.587445 | 3.3:+75428654 | None:intergenic |
| TCGCCGTCAATCAGAATTCG+GGG | 0.589042 | 3.3:-75428254 | MS.gene013676:CDS |
| TTGTGTGAAAACGGCCAACA+AGG | 0.590289 | 3.3:+75428896 | None:intergenic |
| GGTGATTGTCAAAGTACCAC+GGG | 0.595716 | 3.3:+75428725 | None:intergenic |
| TTCCAGAGAATCCTAAAGAA+GGG | 0.596625 | 3.3:-75428748 | MS.gene013676:CDS |
| TTAGGATTCTCTGGAAATCG+AGG | 0.600593 | 3.3:+75428755 | None:intergenic |
| CGGCCAACAAGGCAGAGGCG+AGG | 0.607947 | 3.3:+75428907 | None:intergenic |
| GTTACATTCATGGCTTGCAG+AGG | 0.609201 | 3.3:+75427871 | None:intergenic |
| TCCTTTGACAGGATTCCAGA+AGG | 0.610347 | 3.3:+75428831 | None:intergenic |
| TATTCTCTGGGATCACATTG+AGG | 0.619180 | 3.3:+75428695 | None:intergenic |
| GAAAACGGCCAACAAGGCAG+AGG | 0.620339 | 3.3:+75428902 | None:intergenic |
| AACTGCGTGTAGAAAAGCAA+AGG | 0.620924 | 3.3:-75428297 | MS.gene013676:CDS |
| GTTACAGTTTCAAACGGTAA+CGG | 0.628501 | 3.3:-75428208 | MS.gene013676:CDS |
| CGTCCAGCCAAAATCAACAA+TGG | 0.628631 | 3.3:-75428109 | MS.gene013676:CDS |
| ATCATCACCTGCAGTTAACG+AGG | 0.637893 | 3.3:-75427957 | MS.gene013676:CDS |
| CCAACTTTCCCTCAGTGATG+AGG | 0.637986 | 3.3:-75428980 | MS.gene013676:CDS |
| AGCAAACCAAAACGTTCTAG+AGG | 0.638592 | 3.3:-75428022 | MS.gene013676:CDS |
| ACGTTCTAGAGGCTTAAATG+AGG | 0.651463 | 3.3:-75428011 | MS.gene013676:CDS |
| GGATCACATTGAGGATCAGG+AGG | 0.653310 | 3.3:+75428704 | None:intergenic |
| ATTGCGCAGTAAATGTGCTA+AGG | 0.668027 | 3.3:+75428144 | None:intergenic |
| ATGCACCTGTATCCAGAATG+GGG | 0.670343 | 3.3:+75428642 | None:intergenic |
| GGATTCTCTGGAAATCGAGG+TGG | 0.674590 | 3.3:+75428758 | None:intergenic |
| GATGATGGCACACGACTATG+GGG | 0.677657 | 3.3:-75428325 | MS.gene013676:CDS |
| AGGTGATTGTCAAAGTACCA+CGG | 0.679925 | 3.3:+75428724 | None:intergenic |
| CGCCGTCAATCAGAATTCGG+GGG | 0.682054 | 3.3:-75428253 | MS.gene013676:CDS |
| GAATCCTAAAGAAGGGCCCG+TGG | 0.693392 | 3.3:-75428741 | MS.gene013676:CDS |
| GAGGTGGTGTGCAAATTGGA+AGG | 0.694439 | 3.3:+75428774 | None:intergenic |
| ATTCGTTCTCCTCATCACTG+AGG | 0.717239 | 3.3:+75428971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTATTAATTGTATTGA+AGG | + | chr3.3:75428117-75428136 | None:intergenic | 15.0% |
| !! | AAGCAATGAATATAATATCT+TGG | - | chr3.3:75428317-75428336 | MS.gene013676:CDS | 20.0% |
| !!! | TAGCAAGTTAATGAAATTTT+GGG | + | chr3.3:75428575-75428594 | None:intergenic | 20.0% |
| !!! | TTAGCAAGTTAATGAAATTT+TGG | + | chr3.3:75428576-75428595 | None:intergenic | 20.0% |
| ! | AATCAATAACTCAGTCAATA+CGG | - | chr3.3:75428010-75428029 | MS.gene013676:CDS | 25.0% |
| ! | GATATTATATTCATTGCTTC+CGG | + | chr3.3:75428316-75428335 | None:intergenic | 25.0% |
| ! | TATTAATTGTATTGAAGGAC+TGG | + | chr3.3:75428112-75428131 | None:intergenic | 25.0% |
| !!! | TATTTTTGGCATCATATTCA+AGG | + | chr3.3:75427542-75427561 | None:intergenic | 25.0% |
| AAAAAAATCAAGAGACAAGG+TGG | - | chr3.3:75427633-75427652 | MS.gene013676:intron | 30.0% | |
| AAAAAATCAAGAGACAAGGT+GGG | - | chr3.3:75427634-75427653 | MS.gene013676:intron | 30.0% | |
| AATTCGGTCATATATGATGA+TGG | - | chr3.3:75427227-75427246 | MS.gene013676:intron | 30.0% | |
| ATCATCATATATGACCGAAT+TGG | + | chr3.3:75427228-75427247 | None:intergenic | 30.0% | |
| CAGAAAAAAATCAAGAGACA+AGG | - | chr3.3:75427630-75427649 | MS.gene013676:intron | 30.0% | |
| CTAATTAAAGATCCTGTCAT+TGG | - | chr3.3:75428592-75428611 | MS.gene013676:intron | 30.0% | |
| GTAGAAAAGCAAAGGAAAAA+CGG | - | chr3.3:75427804-75427823 | MS.gene013676:intron | 30.0% | |
| TCAATGAGGATTACAATTTC+CGG | + | chr3.3:75428409-75428428 | None:intergenic | 30.0% | |
| TGTAATCCTCATTGAAACTT+TGG | - | chr3.3:75428414-75428433 | MS.gene013676:intron | 30.0% | |
| TTATATGATATGCCTCTTCA+TGG | - | chr3.3:75428829-75428848 | MS.gene013676:CDS | 30.0% | |
| !!! | ATTTTTTTCTGACGCTTCAA+TGG | + | chr3.3:75427621-75427640 | None:intergenic | 30.0% |
| !!! | GATTATGCCATTGTTGATTT+TGG | + | chr3.3:75427994-75428013 | None:intergenic | 30.0% |
| AAAAATCAAGAGACAAGGTG+GGG | - | chr3.3:75427635-75427654 | MS.gene013676:intron | 35.0% | |
| AAGTTCAAATATGAGCGTCT+AGG | - | chr3.3:75427672-75427691 | MS.gene013676:intron | 35.0% | |
| AATCAACAGAATTTCGCCAA+AGG | + | chr3.3:75428534-75428553 | None:intergenic | 35.0% | |
| ACGGACATTGCGAATTATAT+TGG | - | chr3.3:75427510-75427529 | MS.gene013676:intron | 35.0% | |
| CAATTTCCGGTTTATAGACA+CGG | + | chr3.3:75428396-75428415 | None:intergenic | 35.0% | |
| CACGAATTCTCATATAGGAA+CGG | + | chr3.3:75427578-75427597 | None:intergenic | 35.0% | |
| CATTCACCAAAGTTTCAATG+AGG | + | chr3.3:75428423-75428442 | None:intergenic | 35.0% | |
| CTCATTGAAACTTTGGTGAA+TGG | - | chr3.3:75428421-75428440 | MS.gene013676:intron | 35.0% | |
| GTTACAGTTTCAAACGGTAA+CGG | - | chr3.3:75427885-75427904 | MS.gene013676:CDS | 35.0% | |
| TCAGACTTATGCTACTCTAT+TGG | - | chr3.3:75428454-75428473 | MS.gene013676:intron | 35.0% | |
| TTACTGCGAGAAACTTTACT+CGG | - | chr3.3:75427737-75427756 | MS.gene013676:intron | 35.0% | |
| TTCACACAAACAAGCCAATT+CGG | - | chr3.3:75427211-75427230 | MS.gene013676:intron | 35.0% | |
| TTCATGGTTACCAATTCACA+TGG | - | chr3.3:75428845-75428864 | MS.gene013676:CDS | 35.0% | |
| TTCCAGAGAATCCTAAAGAA+GGG | - | chr3.3:75427345-75427364 | MS.gene013676:intron | 35.0% | |
| TTTCCAGAGAATCCTAAAGA+AGG | - | chr3.3:75427344-75427363 | MS.gene013676:intron | 35.0% | |
| ! | GAGGTGGTTGGAATTATTTT+TGG | + | chr3.3:75427556-75427575 | None:intergenic | 35.0% |
| ! | TCTCATTGCAGGATGATTTT+TGG | + | chr3.3:75428199-75428218 | None:intergenic | 35.0% |
| !! | CATTTTTCAGTTGACCGTAT+TGG | - | chr3.3:75428487-75428506 | MS.gene013676:intron | 35.0% |
| !! | TTGGCTTGTTTGTGTGAAAA+CGG | + | chr3.3:75427209-75427228 | None:intergenic | 35.0% |
| !!! | CTCGGCAACTCATTTTTTAT+CGG | - | chr3.3:75428268-75428287 | MS.gene013676:CDS | 35.0% |
| !!! | TTTAAGCCTCTAGAACGTTT+TGG | + | chr3.3:75428080-75428099 | None:intergenic | 35.0% |
| AAAATCCAAGAGATAGAGCC+AGG | - | chr3.3:75427288-75427307 | MS.gene013676:intron | 40.0% | |
| AACTGCGTGTAGAAAAGCAA+AGG | - | chr3.3:75427796-75427815 | MS.gene013676:intron | 40.0% | |
| AATCCTCTAATGAGCCATGA+AGG | + | chr3.3:75428784-75428803 | None:intergenic | 40.0% | |
| AATTGAAGGGCAACTTGGTT+AGG | + | chr3.3:75427429-75427448 | None:intergenic | 40.0% | |
| AGCAAACCAAAACGTTCTAG+AGG | - | chr3.3:75428071-75428090 | MS.gene013676:CDS | 40.0% | |
| ATAATATCTTGGAACTGCCG+CGG | - | chr3.3:75428328-75428347 | MS.gene013676:CDS | 40.0% | |
| ATGGCTCATTAGAGGATTTC+AGG | - | chr3.3:75428786-75428805 | MS.gene013676:CDS | 40.0% | |
| ATTGCGCAGTAAATGTGCTA+AGG | + | chr3.3:75427952-75427971 | None:intergenic | 40.0% | |
| CAGCACACGAATTCTCATAT+AGG | + | chr3.3:75427583-75427602 | None:intergenic | 40.0% | |
| GAAAAGCAAAGGAAAAACGG+AGG | - | chr3.3:75427807-75427826 | MS.gene013676:intron | 40.0% | |
| GAATTCTCATATAGGAACGG+AGG | + | chr3.3:75427575-75427594 | None:intergenic | 40.0% | |
| GCAGCAGTTACAGTTTCAAA+CGG | - | chr3.3:75427879-75427898 | MS.gene013676:CDS | 40.0% | |
| GTGCAAATTGGAAGGTGAAT+AGG | + | chr3.3:75427314-75427333 | None:intergenic | 40.0% | |
| TCTCGCAGTAATCTTCTATG+TGG | + | chr3.3:75427728-75427747 | None:intergenic | 40.0% | |
| TGCTCTTGAACCATGTGAAT+TGG | + | chr3.3:75428858-75428877 | None:intergenic | 40.0% | |
| TTATATTCATTGCTTCCGGC+AGG | + | chr3.3:75428312-75428331 | None:intergenic | 40.0% | |
| ! | AGGTGATTGTCAAAGTACCA+CGG | + | chr3.3:75427372-75427391 | None:intergenic | 40.0% |
| ! | CGGACAAGGTCTTTAATTTC+AGG | + | chr3.3:75428376-75428395 | None:intergenic | 40.0% |
| ! | GTGAATTGGTAACCATGAAG+AGG | + | chr3.3:75428844-75428863 | None:intergenic | 40.0% |
| ! | TTAGGATTCTCTGGAAATCG+AGG | + | chr3.3:75427341-75427360 | None:intergenic | 40.0% |
| ! | TTCACATGGTTCAAGAGCAT+CGG | - | chr3.3:75428859-75428878 | MS.gene013676:CDS | 40.0% |
| ! | TTGACCGTATTGGTAGAAGT+GGG | - | chr3.3:75428497-75428516 | MS.gene013676:intron | 40.0% |
| ! | TTTGAAACTGTAACTGCTGC+CGG | + | chr3.3:75427879-75427898 | None:intergenic | 40.0% |
| ! | TTTTGTCTTCAGAGGAGAGA+TGG | + | chr3.3:75428744-75428763 | None:intergenic | 40.0% |
| !! | ACGTTCTAGAGGCTTAAATG+AGG | - | chr3.3:75428082-75428101 | MS.gene013676:CDS | 40.0% |
| !! | TATTCTCTGGGATCACATTG+AGG | + | chr3.3:75427401-75427420 | None:intergenic | 40.0% |
| !!! | ATGCCATTGTTGATTTTGGC+TGG | + | chr3.3:75427990-75428009 | None:intergenic | 40.0% |
| !!! | GGATGATTTTTGGTCTGTTG+AGG | + | chr3.3:75428189-75428208 | None:intergenic | 40.0% |
| !!! | TCTAGAACGTTTTGGTTTGC+TGG | + | chr3.3:75428072-75428091 | None:intergenic | 40.0% |
| !!! | TGGATTTTGACTCCTTTGAC+AGG | + | chr3.3:75427276-75427295 | None:intergenic | 40.0% |
| AAACGCTGCACTCCAAACTT+TGG | - | chr3.3:75428951-75428970 | MS.gene013676:CDS | 45.0% | |
| AACGATCCATGGTGCATCAT+TGG | - | chr3.3:75428706-75428725 | MS.gene013676:CDS | 45.0% | |
| AAGCAAAGGAAAAACGGAGG+AGG | - | chr3.3:75427810-75427829 | MS.gene013676:intron | 45.0% | |
| AAGTCACCAATGATGCACCA+TGG | + | chr3.3:75428715-75428734 | None:intergenic | 45.0% | |
| AATCGAGGTGGTGTGCAAAT+TGG | + | chr3.3:75427326-75427345 | None:intergenic | 45.0% | |
| AATTGGAAGGTGAATAGGCC+TGG | + | chr3.3:75427309-75427328 | None:intergenic | 45.0% | |
| ACGGTCAATACGAGCTTCTT+TGG | + | chr3.3:75428896-75428915 | None:intergenic | 45.0% | |
| AGGATCATCTGTCTGTGTGA+GGG | + | chr3.3:75427169-75427188 | None:intergenic | 45.0% | |
| AGTCAATACGGAGCTGTTAC+AGG | - | chr3.3:75428022-75428041 | MS.gene013676:CDS | 45.0% | |
| ATATGGAGGCCACCAAAGTT+TGG | + | chr3.3:75428966-75428985 | None:intergenic | 45.0% | |
| ATCATCACCTGCAGTTAACG+AGG | - | chr3.3:75428136-75428155 | MS.gene013676:CDS | 45.0% | |
| ATGCACCTGTATCCAGAATG+GGG | + | chr3.3:75427454-75427473 | None:intergenic | 45.0% | |
| ATTCGTTCTCCTCATCACTG+AGG | + | chr3.3:75427125-75427144 | None:intergenic | 45.0% | |
| ATTTCTGCCTCGTTAACTGC+AGG | + | chr3.3:75428146-75428165 | None:intergenic | 45.0% | |
| ATTTGCCCCATTCTGGATAC+AGG | - | chr3.3:75427446-75427465 | MS.gene013676:intron | 45.0% | |
| CATGCACCTGTATCCAGAAT+GGG | + | chr3.3:75427455-75427474 | None:intergenic | 45.0% | |
| CCAGAATGGGGCAAATTGAA+GGG | + | chr3.3:75427442-75427461 | None:intergenic | 45.0% | |
| CCTTGTCCGTGTCTATAAAC+CGG | - | chr3.3:75428387-75428406 | MS.gene013676:intron | 45.0% | |
| CGTCCAGCCAAAATCAACAA+TGG | - | chr3.3:75427984-75428003 | MS.gene013676:CDS | 45.0% | |
| CTCTAATGAGCCATGAAGGA+CGG | + | chr3.3:75428780-75428799 | None:intergenic | 45.0% | |
| GAAACTTTACTCGGCTGATG+AGG | - | chr3.3:75427746-75427765 | MS.gene013676:intron | 45.0% | |
| GGAAACTACTGCTACTACTG+CGG | - | chr3.3:75427693-75427712 | MS.gene013676:intron | 45.0% | |
| GGTTAGGAGCAGTATTCTCT+GGG | + | chr3.3:75427413-75427432 | None:intergenic | 45.0% | |
| GTCAATACGAGCTTCTTTGG+AGG | + | chr3.3:75428893-75428912 | None:intergenic | 45.0% | |
| TCATGCACCTGTATCCAGAA+TGG | + | chr3.3:75427456-75427475 | None:intergenic | 45.0% | |
| TCCAGAATGGGGCAAATTGA+AGG | + | chr3.3:75427443-75427462 | None:intergenic | 45.0% | |
| TCCTTTGACAGGATTCCAGA+AGG | + | chr3.3:75427265-75427284 | None:intergenic | 45.0% | |
| TCTAGGCTTCATGACAGAGA+AGG | - | chr3.3:75427482-75427501 | MS.gene013676:intron | 45.0% | |
| TGCTACTACTGCGGAATGTT+AGG | - | chr3.3:75427702-75427721 | MS.gene013676:intron | 45.0% | |
| TGGAAACGATAGAGACCTTC+TGG | - | chr3.3:75427247-75427266 | MS.gene013676:intron | 45.0% | |
| TGGTCGTCGAAGAGAATCAT+GGG | - | chr3.3:75428654-75428673 | MS.gene013676:CDS | 45.0% | |
| TGGTTAGGAGCAGTATTCTC+TGG | + | chr3.3:75427414-75427433 | None:intergenic | 45.0% | |
| TTCGTTCTCCTCATCACTGA+GGG | + | chr3.3:75427124-75427143 | None:intergenic | 45.0% | |
| TTCTACGGTTACCCAGATTC+TGG | - | chr3.3:75428634-75428653 | MS.gene013676:intron | 45.0% | |
| TTCTCATATAGGAACGGAGG+TGG | + | chr3.3:75427572-75427591 | None:intergenic | 45.0% | |
| TTCTCTGTCATGAAGCCTAG+AGG | + | chr3.3:75427483-75427502 | None:intergenic | 45.0% | |
| TTGGCTGGACGCATTAATTG+TGG | + | chr3.3:75427975-75427994 | None:intergenic | 45.0% | |
| TTGTGTGAAAACGGCCAACA+AGG | + | chr3.3:75427200-75427219 | None:intergenic | 45.0% | |
| ! | AAAGTTTGGAGTGCAGCGTT+TGG | + | chr3.3:75428952-75428971 | None:intergenic | 45.0% |
| ! | AAGAGGAGTGTGGTCAGATA+TGG | + | chr3.3:75428983-75429002 | None:intergenic | 45.0% |
| ! | AATACGAGCTTCTTTGGAGG+AGG | + | chr3.3:75428890-75428909 | None:intergenic | 45.0% |
| ! | ATACGAGCTTCTTTGGAGGA+GGG | + | chr3.3:75428889-75428908 | None:intergenic | 45.0% |
| ! | CTCTCCTCTGAAGACAAAAG+AGG | - | chr3.3:75428745-75428764 | MS.gene013676:CDS | 45.0% |
| ! | GGTGATTGTCAAAGTACCAC+GGG | + | chr3.3:75427371-75427390 | None:intergenic | 45.0% |
| ! | GTTACATTCATGGCTTGCAG+AGG | + | chr3.3:75428225-75428244 | None:intergenic | 45.0% |
| ! | GTTGACCGTATTGGTAGAAG+TGG | - | chr3.3:75428496-75428515 | MS.gene013676:intron | 45.0% |
| ! | GTTTGGATAAAGCGTTTGCC+AGG | + | chr3.3:75428935-75428954 | None:intergenic | 45.0% |
| ! | TCCACCTCTTTTGTCTTCAG+AGG | + | chr3.3:75428752-75428771 | None:intergenic | 45.0% |
| ! | TCCTCTGAAGACAAAAGAGG+TGG | - | chr3.3:75428748-75428767 | MS.gene013676:CDS | 45.0% |
| ! | TGACCGTATTGGTAGAAGTG+GGG | - | chr3.3:75428498-75428517 | MS.gene013676:intron | 45.0% |
| ! | TGCTTTTCTACACGCAGTTC+AGG | + | chr3.3:75427795-75427814 | None:intergenic | 45.0% |
| !! | AAGATCCTGTCATTGGTTCC+TGG | - | chr3.3:75428599-75428618 | MS.gene013676:intron | 45.0% |
| !! | ACCTTCTGGAATCCTGTCAA+AGG | - | chr3.3:75427261-75427280 | MS.gene013676:intron | 45.0% |
| !! | GCAGAGTTGGCAGTTTTGAT+TGG | + | chr3.3:75427927-75427946 | None:intergenic | 45.0% |
| !!! | CATTTTTTATCGGCAGAGCC+TGG | - | chr3.3:75428278-75428297 | MS.gene013676:CDS | 45.0% |
| AAGCGTTTGCCAGGAAGAAG+TGG | + | chr3.3:75428926-75428945 | None:intergenic | 50.0% | |
| AGGAAGAAGTGGCTAGAGCA+CGG | + | chr3.3:75428915-75428934 | None:intergenic | 50.0% | |
| AGGCTTCATGACAGAGAAGG+TGG | - | chr3.3:75427485-75427504 | MS.gene013676:intron | 50.0% | |
| ATGTGCTAAGGCTGCAGAGT+TGG | + | chr3.3:75427940-75427959 | None:intergenic | 50.0% | |
| CAAAGGAAAAACGGAGGAGG+CGG | - | chr3.3:75427813-75427832 | MS.gene013676:intron | 50.0% | |
| CAGGTGCATGACATTCCTCT+AGG | - | chr3.3:75427465-75427484 | MS.gene013676:intron | 50.0% | |
| CATATAGGAACGGAGGTGGT+TGG | + | chr3.3:75427568-75427587 | None:intergenic | 50.0% | |
| CATCACTGAGGGAAAGTTGG+TGG | + | chr3.3:75427113-75427132 | None:intergenic | 50.0% | |
| CCAACTTTCCCTCAGTGATG+AGG | - | chr3.3:75427113-75427132 | MS.gene013676:intron | 50.0% | |
| CCCCATGGAAGTTTCACACT+CGG | - | chr3.3:75428250-75428269 | MS.gene013676:CDS | 50.0% | |
| CCCTTCAATTTGCCCCATTC+TGG | - | chr3.3:75427439-75427458 | MS.gene013676:intron | 50.0% | |
| CCGAGTGTGAAACTTCCATG+GGG | + | chr3.3:75428253-75428272 | None:intergenic | 50.0% | |
| CCGGTTTATAGACACGGACA+AGG | + | chr3.3:75428390-75428409 | None:intergenic | 50.0% | |
| CCTCATCACTGAGGGAAAGT+TGG | + | chr3.3:75427116-75427135 | None:intergenic | 50.0% | |
| CGAGTGTGAAACTTCCATGG+GGG | + | chr3.3:75428252-75428271 | None:intergenic | 50.0% | |
| CGTCCTTCATGGCTCATTAG+AGG | - | chr3.3:75428778-75428797 | MS.gene013676:CDS | 50.0% | |
| CGTTAGAGAGGCTGCTTAGA+TGG | + | chr3.3:75428690-75428709 | None:intergenic | 50.0% | |
| CTCCCCCGAATTCTGATTGA+CGG | + | chr3.3:75427845-75427864 | None:intergenic | 50.0% | |
| CTCGCCGTCAATCAGAATTC+GGG | - | chr3.3:75427838-75427857 | MS.gene013676:intron | 50.0% | |
| CTCTTCGACGACCAGAATCT+GGG | + | chr3.3:75428648-75428667 | None:intergenic | 50.0% | |
| CTGGGATCACATTGAGGATC+AGG | + | chr3.3:75427395-75427414 | None:intergenic | 50.0% | |
| CTGGTCGTCGAAGAGAATCA+TGG | - | chr3.3:75428653-75428672 | MS.gene013676:CDS | 50.0% | |
| GACCCCCACTTCTACCAATA+CGG | + | chr3.3:75428504-75428523 | None:intergenic | 50.0% | |
| GAGGATCATCTGTCTGTGTG+AGG | + | chr3.3:75427170-75427189 | None:intergenic | 50.0% | |
| GAGGTGGTGTGCAAATTGGA+AGG | + | chr3.3:75427322-75427341 | None:intergenic | 50.0% | |
| GCCGAGTGTGAAACTTCCAT+GGG | + | chr3.3:75428254-75428273 | None:intergenic | 50.0% | |
| GCTCGCCGTCAATCAGAATT+CGG | - | chr3.3:75427837-75427856 | MS.gene013676:intron | 50.0% | |
| GCTTCATGACAGAGAAGGTG+GGG | - | chr3.3:75427487-75427506 | MS.gene013676:intron | 50.0% | |
| GGATCACATTGAGGATCAGG+AGG | + | chr3.3:75427392-75427411 | None:intergenic | 50.0% | |
| GGCTTCATGACAGAGAAGGT+GGG | - | chr3.3:75427486-75427505 | MS.gene013676:intron | 50.0% | |
| GGGCAAATTGAAGGGCAACT+TGG | + | chr3.3:75427434-75427453 | None:intergenic | 50.0% | |
| GGTAACCGTAGAAAGCTGTG+AGG | + | chr3.3:75428627-75428646 | None:intergenic | 50.0% | |
| TACTCGGCTGATGAGGATGA+TGG | - | chr3.3:75427753-75427772 | MS.gene013676:intron | 50.0% | |
| TCGCCGTCAATCAGAATTCG+GGG | - | chr3.3:75427839-75427858 | MS.gene013676:intron | 50.0% | |
| TCTCTTCGACGACCAGAATC+TGG | + | chr3.3:75428649-75428668 | None:intergenic | 50.0% | |
| TGAATGTAACCATGCCCCCA+TGG | - | chr3.3:75428235-75428254 | MS.gene013676:CDS | 50.0% | |
| TGCACCATGGATCGTTAGAG+AGG | + | chr3.3:75428702-75428721 | None:intergenic | 50.0% | |
| TGCCGAGTGTGAAACTTCCA+TGG | + | chr3.3:75428255-75428274 | None:intergenic | 50.0% | |
| ! | AGGAGTGTGGTCAGATATGG+AGG | + | chr3.3:75428980-75428999 | None:intergenic | 50.0% |
| ! | AGGATGATGGCACACGACTA+TGG | - | chr3.3:75427766-75427785 | MS.gene013676:intron | 50.0% |
| ! | GACCGTATTGGTAGAAGTGG+GGG | - | chr3.3:75428499-75428518 | MS.gene013676:intron | 50.0% |
| ! | GATGATGGCACACGACTATG+GGG | - | chr3.3:75427768-75427787 | MS.gene013676:intron | 50.0% |
| ! | GGATGATGGCACACGACTAT+GGG | - | chr3.3:75427767-75427786 | MS.gene013676:intron | 50.0% |
| ! | GGATTCTCTGGAAATCGAGG+TGG | + | chr3.3:75427338-75427357 | None:intergenic | 50.0% |
| ! | TGGGGGCATGGTTACATTCA+TGG | + | chr3.3:75428235-75428254 | None:intergenic | 50.0% |
| !! | ATAGGCCTGGCTCTATCTCT+TGG | + | chr3.3:75427296-75427315 | None:intergenic | 50.0% |
| !! | GGCCCTTCTTTAGGATTCTC+TGG | + | chr3.3:75427350-75427369 | None:intergenic | 50.0% |
| !! | TGCAGAGGTGTTCTCATTGC+AGG | + | chr3.3:75428210-75428229 | None:intergenic | 50.0% |
| AGTACCACGGGCCCTTCTTT+AGG | + | chr3.3:75427359-75427378 | None:intergenic | 55.0% | |
| ATGAGCCATGAAGGACGGTC+TGG | + | chr3.3:75428775-75428794 | None:intergenic | 55.0% | |
| CATGACAGAGAAGGTGGGGA+CGG | - | chr3.3:75427491-75427510 | MS.gene013676:intron | 55.0% | |
| CGCCGTCAATCAGAATTCGG+GGG | - | chr3.3:75427840-75427859 | MS.gene013676:intron | 55.0% | |
| CGCTGCACTCCAAACTTTGG+TGG | - | chr3.3:75428954-75428973 | MS.gene013676:CDS | 55.0% | |
| CGTCAATCAGAATTCGGGGG+AGG | - | chr3.3:75427843-75427862 | MS.gene013676:intron | 55.0% | |
| GAAAACGGCCAACAAGGCAG+AGG | + | chr3.3:75427194-75427213 | None:intergenic | 55.0% | |
| GAATCCTAAAGAAGGGCCCG+TGG | - | chr3.3:75427352-75427371 | MS.gene013676:intron | 55.0% | |
| GCAGCCTCTCTAACGATCCA+TGG | - | chr3.3:75428695-75428714 | MS.gene013676:CDS | 55.0% | |
| GCTGTAGGAGAAGAGGAGTG+TGG | + | chr3.3:75428993-75429012 | None:intergenic | 55.0% | |
| GTGAAACTTCCATGGGGGCA+TGG | + | chr3.3:75428247-75428266 | None:intergenic | 55.0% | |
| GTGCTCTAGCCACTTCTTCC+TGG | - | chr3.3:75428914-75428933 | MS.gene013676:CDS | 55.0% | |
| TGGCGCCTCACAGCTTTCTA+CGG | - | chr3.3:75428619-75428638 | MS.gene013676:intron | 55.0% | |
| AGGCGCCAGGAACCAATGAC+AGG | + | chr3.3:75428607-75428626 | None:intergenic | 60.0% | |
| ATCTTGGAACTGCCGCGGTC+TGG | - | chr3.3:75428333-75428352 | MS.gene013676:intron | 60.0% | |
| CCTTAACGTTCCCCAGACCG+CGG | + | chr3.3:75428348-75428367 | None:intergenic | 60.0% | |
| CGGGGGAGGAGTTTCTTCAC+CGG | - | chr3.3:75427857-75427876 | MS.gene013676:intron | 60.0% | |
| GATCCTCGCCTCTGCCTTGT+TGG | - | chr3.3:75427183-75427202 | MS.gene013676:intron | 60.0% | |
| GTGGACCAGACCGTCCTTCA+TGG | - | chr3.3:75428767-75428786 | MS.gene013676:CDS | 60.0% | |
| GTGGGGGTCTCGCTATCCTT+TGG | - | chr3.3:75428515-75428534 | MS.gene013676:intron | 60.0% | |
| GTGTGAGGGCTTCGTCGATC+TGG | + | chr3.3:75427155-75427174 | None:intergenic | 60.0% | |
| TCTTGGAACTGCCGCGGTCT+GGG | - | chr3.3:75428334-75428353 | MS.gene013676:intron | 60.0% | |
| TTCATTGCTTCCGGCAGGCC+TGG | + | chr3.3:75428307-75428326 | None:intergenic | 60.0% | |
| ! | GTAGAAAGCTGTGAGGCGCC+AGG | + | chr3.3:75428620-75428639 | None:intergenic | 60.0% |
| ATCGGCAGAGCCTGGCTTCC+AGG | - | chr3.3:75428286-75428305 | MS.gene013676:CDS | 65.0% | |
| CCGCGGTCTGGGGAACGTTA+AGG | - | chr3.3:75428345-75428364 | MS.gene013676:intron | 65.0% | |
| CTTGGAACTGCCGCGGTCTG+GGG | - | chr3.3:75428335-75428354 | MS.gene013676:intron | 65.0% | |
| AGCCTGGCTTCCAGGCCTGC+CGG | - | chr3.3:75428294-75428313 | MS.gene013676:CDS | 70.0% | |
| CGGCCAACAAGGCAGAGGCG+AGG | + | chr3.3:75427189-75427208 | None:intergenic | 70.0% | |
| TTCCGGCAGGCCTGGAAGCC+AGG | + | chr3.3:75428299-75428318 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 75427099 | 75429016 | 75427099 | ID=MS.gene013676 |
| chr3.3 | mRNA | 75427099 | 75429016 | 75427099 | ID=MS.gene013676.t1;Parent=MS.gene013676 |
| chr3.3 | exon | 75428648 | 75429016 | 75428648 | ID=MS.gene013676.t1.exon1;Parent=MS.gene013676.t1 |
| chr3.3 | CDS | 75428648 | 75429016 | 75428648 | ID=cds.MS.gene013676.t1;Parent=MS.gene013676.t1 |
| chr3.3 | exon | 75427876 | 75428347 | 75427876 | ID=MS.gene013676.t1.exon2;Parent=MS.gene013676.t1 |
| chr3.3 | CDS | 75427876 | 75428347 | 75427876 | ID=cds.MS.gene013676.t1;Parent=MS.gene013676.t1 |
| chr3.3 | exon | 75427099 | 75427103 | 75427099 | ID=MS.gene013676.t1.exon3;Parent=MS.gene013676.t1 |
| chr3.3 | CDS | 75427099 | 75427103 | 75427099 | ID=cds.MS.gene013676.t1;Parent=MS.gene013676.t1 |
| Gene Sequence |
| Protein sequence |
