Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038676.t1 | XP_024628877.1 | 68.6 | 354 | 107 | 1 | 1 | 350 | 1 | 354 | 2.30E-136 | 495.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038676.t1 | A0A396JIW9 | 55.1 | 363 | 146 | 5 | 1 | 358 | 1 | 351 | 4.6e-102 | 381.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038676.t1 | MTR_0010s0370 | 61.667 | 180 | 69 | 0 | 1 | 180 | 1 | 180 | 4.32e-76 | 236 |
MS.gene038676.t1 | MTR_0010s0350 | 61.667 | 180 | 69 | 0 | 1 | 180 | 1 | 180 | 4.32e-76 | 236 |
MS.gene038676.t1 | MTR_1g036720 | 62.727 | 110 | 41 | 0 | 1 | 110 | 1 | 110 | 5.68e-44 | 150 |
MS.gene038676.t1 | MTR_1g036710 | 38.756 | 209 | 74 | 8 | 132 | 335 | 1 | 160 | 1.56e-33 | 128 |
MS.gene038676.t1 | MTR_6g033215 | 32.738 | 168 | 113 | 0 | 32 | 199 | 127 | 294 | 1.03e-25 | 107 |
MS.gene038676.t1 | MTR_7g089990 | 41.593 | 113 | 64 | 1 | 104 | 214 | 86 | 198 | 1.56e-20 | 90.5 |
MS.gene038676.t1 | MTR_3g053920 | 29.167 | 168 | 100 | 3 | 4 | 171 | 8 | 156 | 6.22e-19 | 87.0 |
MS.gene038676.t1 | MTR_4g103530 | 35.000 | 100 | 64 | 1 | 57 | 156 | 5 | 103 | 2.34e-17 | 80.5 |
MS.gene038676.t1 | MTR_2g061500 | 31.200 | 125 | 84 | 1 | 3 | 127 | 7 | 129 | 8.66e-17 | 77.4 |
MS.gene038676.t1 | MTR_2g063055 | 50.000 | 66 | 33 | 0 | 385 | 450 | 67 | 132 | 7.07e-14 | 70.1 |
MS.gene038676.t1 | MTR_7g106180 | 27.273 | 143 | 103 | 1 | 33 | 175 | 25 | 166 | 2.02e-13 | 70.1 |
MS.gene038676.t1 | MTR_3g024240 | 33.058 | 121 | 79 | 1 | 82 | 200 | 55 | 175 | 4.65e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038676.t1 | AT3G31430 | 24.883 | 213 | 156 | 1 | 3 | 215 | 103 | 311 | 2.85e-20 | 92.0 |
MS.gene038676.t1 | AT5G18636 | 25.472 | 212 | 156 | 1 | 4 | 215 | 9 | 218 | 6.72e-20 | 91.7 |
MS.gene038676.t1 | AT5G25200 | 25.472 | 212 | 156 | 1 | 4 | 215 | 9 | 218 | 8.33e-20 | 91.3 |
MS.gene038676.t1 | AT2G41590 | 25.943 | 212 | 155 | 1 | 4 | 215 | 9 | 218 | 1.57e-19 | 90.5 |
MS.gene038676.t1 | AT2G02103 | 25.000 | 212 | 157 | 1 | 4 | 215 | 9 | 218 | 2.56e-19 | 90.1 |
MS.gene038676.t1 | AT2G17920 | 24.528 | 212 | 158 | 1 | 4 | 215 | 9 | 218 | 1.53e-18 | 86.7 |
MS.gene038676.t1 | AT2G13450 | 24.348 | 230 | 167 | 3 | 4 | 228 | 9 | 236 | 1.01e-17 | 85.5 |
MS.gene038676.t1 | AT3G57587 | 24.528 | 212 | 158 | 1 | 4 | 215 | 9 | 218 | 4.47e-17 | 83.2 |
MS.gene038676.t1 | AT5G36228 | 23.944 | 213 | 160 | 1 | 3 | 215 | 8 | 218 | 6.02e-17 | 82.8 |
MS.gene038676.t1 | AT4G02000 | 26.974 | 152 | 104 | 3 | 82 | 228 | 7 | 156 | 3.28e-14 | 73.9 |
MS.gene038676.t1 | AT3G47920 | 26.241 | 141 | 102 | 2 | 75 | 215 | 9 | 147 | 2.29e-13 | 71.2 |
MS.gene038676.t1 | AT5G36225 | 30.526 | 95 | 66 | 0 | 121 | 215 | 17 | 111 | 4.32e-13 | 69.3 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
56889 | gene | 6657 | 14214 | 6657 | ID=MS.gene038676 |
56889 | mRNA | 6657 | 14214 | 6657 | ID=MS.gene038676.t1;Parent=MS.gene038676 |
56889 | exon | 13053 | 14214 | 13053 | ID=MS.gene038676.t1.exon1;Parent=MS.gene038676.t1 |
56889 | CDS | 13053 | 14214 | 13053 | ID=cds.MS.gene038676.t1;Parent=MS.gene038676.t1 |
56889 | exon | 12062 | 12226 | 12062 | ID=MS.gene038676.t1.exon2;Parent=MS.gene038676.t1 |
56889 | CDS | 12062 | 12226 | 12062 | ID=cds.MS.gene038676.t1;Parent=MS.gene038676.t1 |
56889 | exon | 6657 | 6745 | 6657 | ID=MS.gene038676.t1.exon3;Parent=MS.gene038676.t1 |
56889 | CDS | 6657 | 6745 | 6657 | ID=cds.MS.gene038676.t1;Parent=MS.gene038676.t1 |
Gene Sequence |
Protein sequence |