AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038676


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038676.t1 MTR_0010s0370 61.667 180 69 0 1 180 1 180 4.32e-76 236
MS.gene038676.t1 MTR_0010s0350 61.667 180 69 0 1 180 1 180 4.32e-76 236
MS.gene038676.t1 MTR_1g036720 62.727 110 41 0 1 110 1 110 5.68e-44 150
MS.gene038676.t1 MTR_1g036710 38.756 209 74 8 132 335 1 160 1.56e-33 128
MS.gene038676.t1 MTR_6g033215 32.738 168 113 0 32 199 127 294 1.03e-25 107
MS.gene038676.t1 MTR_7g089990 41.593 113 64 1 104 214 86 198 1.56e-20 90.5
MS.gene038676.t1 MTR_3g053920 29.167 168 100 3 4 171 8 156 6.22e-19 87.0
MS.gene038676.t1 MTR_4g103530 35.000 100 64 1 57 156 5 103 2.34e-17 80.5
MS.gene038676.t1 MTR_2g061500 31.200 125 84 1 3 127 7 129 8.66e-17 77.4
MS.gene038676.t1 MTR_2g063055 50.000 66 33 0 385 450 67 132 7.07e-14 70.1
MS.gene038676.t1 MTR_7g106180 27.273 143 103 1 33 175 25 166 2.02e-13 70.1
MS.gene038676.t1 MTR_3g024240 33.058 121 79 1 82 200 55 175 4.65e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038676.t1 AT3G31430 24.883 213 156 1 3 215 103 311 2.85e-20 92.0
MS.gene038676.t1 AT5G18636 25.472 212 156 1 4 215 9 218 6.72e-20 91.7
MS.gene038676.t1 AT5G25200 25.472 212 156 1 4 215 9 218 8.33e-20 91.3
MS.gene038676.t1 AT2G41590 25.943 212 155 1 4 215 9 218 1.57e-19 90.5
MS.gene038676.t1 AT2G02103 25.000 212 157 1 4 215 9 218 2.56e-19 90.1
MS.gene038676.t1 AT2G17920 24.528 212 158 1 4 215 9 218 1.53e-18 86.7
MS.gene038676.t1 AT2G13450 24.348 230 167 3 4 228 9 236 1.01e-17 85.5
MS.gene038676.t1 AT3G57587 24.528 212 158 1 4 215 9 218 4.47e-17 83.2
MS.gene038676.t1 AT5G36228 23.944 213 160 1 3 215 8 218 6.02e-17 82.8
MS.gene038676.t1 AT4G02000 26.974 152 104 3 82 228 7 156 3.28e-14 73.9
MS.gene038676.t1 AT3G47920 26.241 141 102 2 75 215 9 147 2.29e-13 71.2
MS.gene038676.t1 AT5G36225 30.526 95 66 0 121 215 17 111 4.32e-13 69.3

Find 0 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
56889 gene 6657 14214 6657 ID=MS.gene038676
56889 mRNA 6657 14214 6657 ID=MS.gene038676.t1;Parent=MS.gene038676
56889 exon 13053 14214 13053 ID=MS.gene038676.t1.exon1;Parent=MS.gene038676.t1
56889 CDS 13053 14214 13053 ID=cds.MS.gene038676.t1;Parent=MS.gene038676.t1
56889 exon 12062 12226 12062 ID=MS.gene038676.t1.exon2;Parent=MS.gene038676.t1
56889 CDS 12062 12226 12062 ID=cds.MS.gene038676.t1;Parent=MS.gene038676.t1
56889 exon 6657 6745 6657 ID=MS.gene038676.t1.exon3;Parent=MS.gene038676.t1
56889 CDS 6657 6745 6657 ID=cds.MS.gene038676.t1;Parent=MS.gene038676.t1
Gene Sequence

>MS.gene038676

ATGGCTTCCATATCAAACCTTTCCCTGAGTGACGAAGATGATGAGTTAGAAATACCAAACGACGATATTCCTAATCAATCCATTGACAGCAGTTGTTCCCTTGTAGGGCGATTTCTCACCAACAAACCCATTCGGGGATACATGATGACGGAAATAATCGCTGAGTTCTGGCATCCTGGTAGAGGAGTCGATATCAAAGAGATAGAGCCAAACCTTTTCACATTCAAGTTCTTCCACTACCGTGACATGCAGCGCATTCTGAAGAAAGGGCCGTGGTATTTCGATAACCACCTACTGATTCTTGATGTCCTCCCGGATAACACACCCCCTAAGCATATCCCTCTCCAATCAGTACCCTTTTGGGTGCAAATTCATGACATTCCAACAGGCTTTATGACTGAAAGAGTAGGCAAGGAGCTTGGCAATTTCATCGGTGATTTCCTGGAATATGATGTCAAAAATAAGTCCAACCATCTCAGGTCTCATATGCGAATTCGTGTGCTCATCGATGTCACTAAACCTCTCAAGCGCCAGAAGAAGATAAAACGTCCAGGCGGGGAGACAAGAATGGTGAAATTCAAATATGAGAGATTGGGAAATTTTTGTTATTATTGTGGTACCCTTGGACACAATGAAGATTACTGTGAAAAGCTCTACTCTGTTACAAATGACGATGGCGTCCGTCATTGGGGACCAGAGCTACGTGTGGAAAGGCAGAGAAATGCAGGACGACGATCGAAGTGGCTGAGAGAGGAGGGTCAAGAGTGGTCGCCACCGTCCGTGTCTGCCGGAAATGGCTCTGCAGGTGCAGACATCAGTAACGGTCCAGCATTGAATGCAGCTATCCCAACTTCAACAACGGTCAATCCGATTAATTTGCTTAAAAATCCACATTTACTGCGCCCATCAAAGAGCAATGAATTTTCAGGTACAACAAAATCCCCCCATGATGAGGCATTGAATGAGGAAAACGTAGAAACTGTGATTACTACAAATGCAAAACGGTCCAGAGCTGAATTTAATGCTAATGATATGAGTGCTGACTCATCAGTGAAGTGCCACCAGAATGCTACTCACACCCCTCCGGAGGACAACAACCTGCAGACAACACCTATGCAGATCGGGCAAACCAGTTCAGAAAACAAAAACTCGTCTACCACCGGTCATTTTTTATCGGCAGAGCCTGGCTCCCAGGCCTGCCGGGGTCATGAATGTCATATCTTGGAACTGCCGAGGCCTTGGAAATGTTAAGGCAGTTCCGTGTATCAAAGACCTTGTCCGAGTCTATAAACCGGACATTCTTATTCTTATTGAAACTTTATGCAATGATAATAAAATCTCTAGTTTGCGTTATTCCATTGGCTTTGATCACTATTTTTCTGTGGATTGTATCGGGAGGAGCGGAGGCATTGCTGTCCTCTGGAATAATTCTGCAAGTTGTTCTATACTCAATTACTCTCAAAATTTTGTCAATCTGTCCATCCAAGACTCTACTAAAGGTGAGTGGCGCCTCACTGCTTTTTACGGTTTCCCTGATTCTAGTAGACGTCGCGAGTCTTGGGATCTGCTCCGCTATCTTAGTTCTCTGTCAAACATTCCATGGTGTGTAATAGGGGATTTCAATGATCATTTATCACCGACAGATAAGAGAGGAGGACCTGACCGCGCCCCCTGGCTCATCAGAGGCTTTAAAGATGCTGTGAATGATTGTGGTCTCTATGATCTTCCACTATTGGGGTATCAATTTACATGGTTCAAAAGTATTGGTACTAATGATTTGAAGGAAGCTCGGCTTGATAGAGCTTTATGTACGGTTCCTTGGCAAGATTTGTTCCCACAAGCAACGCTGCAAACTTTGGTTGCTCCTATGTCAGACCACACGCCTATACTGCTGCAGCTCGAACAAAACAGTTGGCGCTCCCCTTATAGAAGCTTCCGTTTTAACAACTCTTGGCTTTTGGAACTTGACCTGGCTCATGTTGTCAAAGAAAATTGGATCTATTATCCGTCCAACAACATTGTAACCAAATTGAGCTACTGTATTGAGGATATGATATCTTGGAGTAAGTCTAATCATCCTCATTTTCATAGTCGTATTCAGCAGCTGCGTGCGCGTATTGAAGATTCTCGCAGTTCGTTAGCCGAGCCTGAAGGTTCACAATTTTTAGAGCTTCAAAAAGAACTCGCCAATTTATTGCTCCAGGAAGAAAGTTACTGGAGACAACGGTCGAAAGTTTTTTGGTTGAGAGACGGAGACACGAACAACAAATTTTTTCATGCTCAAGCTACTGCTCGTCGCAAGAAAAATACCATCACCAAACTGCGGCATCCTAACGGGGCCTGGCTCACTTCCCATGAAGAGATGAGCGCACATGTTTATGACTATTTCTCGACCATTTTCCAGGCTGTTCAAGGGGATCACAGTGTTGTTACATCTCACGTCCAGACTTGTGTTTCAAGCACAGATAACGAGATACTCACAAAGCCTTTCTTGTTTGAGGAATTCCAGGAAGCAGCTTTCAGCATGCACCCAGACAAATCACCGGGGCCAGATGGCCTAAATCCAGGTTTTTACCAATTCTTTTGGGAGGACATAGGTGAAGAGCTCTACACCACAGCCTGCTCTTGGCTCGAAGCAGGGTCTTTCCCACCTCATCTCAACGACACTCATATTATTCTTGCTCCAAAGGGGGTCCATCCAGAGACCATAAAGGACCTCCGTCCAATATCATTATGTAATGTACTTTACAAAATTATATCAAAGGTTCTGGCTAACCGGCTCCGTCCTCTTATTGGAAAATTCATTTCTCCGGAGCAAGCCGCTTTTATACCGCACCGGTCTATCATGGATAATGCATTAACAGCCTTTGAAGTCCTTCACTATATGAGGTGTAAGCGCAAAGGCAAATCAGGAGAGGTCGCATTAAAGCTCGATATCTCAAAGGCTTTTGATAGTGTTAGTTGGAACTATCTTGAAGCGGTTATGAGAAAATTAGGTTTCTGTGATCGTTGGATATCTTGGATGATGATGTGCATTACTTCGGTAGACTATCACGTTCTTTTTAATGGTGATCGTATAGGCCCGATAAATCCAGCAAGGGGCCTTAGACAAGGCTGTCTGTCGCCTTACTTATATATTATTTGTGCCGAAGGCCTCTCATCTTTATTGAAGCACCATGAGCAAACTGGCAGCATTCATGGTGCGCGTGTTTGTCGATCAGCCCCGCCTATCAGTCATCTCCTTTTTGCAGACGACAGTTTCATCTTCTGTAAACCTACTCCTCAAGAAGCGAACTGTCTAAAGGATATTCTTCTAAGCTATGAAGCAGCCTCTGGACAGTCCCTGAACTTTGGTAAGTCTGCTATATCCTTTAGTCAAAACACGACTCCTGATATAATTACTTCCATATCTGATTGTTTGGGTGTTACAAGAAGTATTGGCGAAGGAAAATATCTAGGCCTCCCGTCCTTAGTAGGTAGAAGTAAGAAGTCTATATTTAATTATATCAAAGATAGAATTTGGAAGAAGTGTCAGGCTTGGAGTGCAAGAGCGTTGTCTAGAGCGGACAAAGAGGTGCTTATTAAATCAGTTGCCCAAGCTATCCCCTCTTATTGCATGGGTGCGTTTCTTATTCCTTCCTCTTTGTGTGAAGAAATAGAAAGAATAATGAACTCGTTCTATTGGGGCTCTAAGAAAAATGGAAGTCGCGGCATTAATTGGTTGAGGTGGGATAAACTCACAATTCACAAATCCATGGGAGGTCTAGGCTTTCGCAACTTAGAAGCGTTCAATCTATCTATGCTAGGAAAACAAGGATGGAAACTCCTAAATGATCCAAACTCCTTACTATCACGCACTCTCAAAGCTAAATATTTCCCTAGGCGGGATTTCTTGGAAGCTAGCATTGGCCACAATCCAAGCTTTACATGGAGGAGTATATGGAGTTCTCAGAACCTTATTAAGCTGGGCTATAGATGGAAAATTGGGGACGGCTCGCAAATCAATGTCTGGACAGATCCGTGGATCCGTACACTTCCGGGTCTCAAGCCATCCACGCCTCCACCCCTAAATATGGAGGACCTCACTGTTAAGGACTTAATGTCACAAGACCTGTTATCATGGAACTCAAATGTGATCTACAACTTGTTTTCCGCACAGGATGCTGCTGCTGTACTTAACATACCGCTGCCAACACGCAAGCTTGCTGATATCCGCGTTTGGCATCAAACTACGGACGGAATCTACACTGTCAAATCTGCATATCAAAGGTGTATGTCCATTGCTGCCGAATCTGAAGCACAACCAGCAGAGATGCAGATAAATTGGAACAAAATCTGGAAGCAACAAGTCCCTCATAAAGTCCGTTCCTTTCTTTGGAGGCTAGCTCGCACATGTCTCCTTATGCGCACAAGTCTCATTCAGAGGGGGGGTCCACTGTTCGGATGCCTGCGTCACATGTGACACTATGGCTGAAACACATTTGCACACATTTTTTATTTGTCCAAAAGCTTTAAGTTGTTGGGAATTAGTGCATTTAGATAATGTCATATCTGAACTTATATATACTACTCATGACTGCACTACGCTTCTGTTCAGCCTCTTTGACAGGTTAACCGCTCAGCAACAATCATTGGCCTCTATGGTTCTTTGGAGTATTTGGAAGAGCCGCAACTTCAAATTATGGGAAAATTCTGACACTCCTCCTTCAACCATTGTTCGTAGAGCTAAAGACTCTTTAAACGAGTGGCAATTCATGCAAAGAGCAATACAACCGAGTCAGGGTACACATAAAGAATCTAAGTGGTTAAAACCATTACCGGCAACTATGAAGTGTAATGTTGACTGTGCGCTTTTCAACAACAACACTATTACTGGTTATGGACTTTGCTTTCGTGATTCGACAGGTCAGTTAGTGCTTGGTATGTCTAATTATGATTTCTTTTCCTCATCTCCAACTGGGGCTGAAGCACTAGGATTATTGGAAGCAATTAAGCTTGCTGCTGCGCGTGGCTATCATTCTGTAACCTTTGAATCCGACTGCAGATTTGTTGTAGATGCAGTCAATACTACTCAAGTCCCTCAGAATGAAGTCGGAGACATCATTAGTAGCTGTCACGAATTGTTGTCTTTTCACAGTCATTTTTCTGTCAAATATGTAAGGAGGCAAGCAAATGAGGTTGCTCACTCTATAGCTAGAGCTTCCTTATCTTACCCTCGCCCCCATATTTTTAATGATGTACCTTCCTACTTGTACCCTTTAATTATGAATGAAATGTCGTAGTTTTGCCTTTGCTCAAAAAAAAAAAAAAAGTCACTTGAGAAGGATAAGTAGTGCGGTGTTTTCCGGCGAAGTTGAATTTGGTACGACTCCGACTCTTCTGAAACAGCATGGGAAAAGCAGCAGCGGAGTTTTGTTGATTTTAGGGTTTTAATTATCTTATTTATATACAACTAAATCTTTTACCCGTGCTACCGCCCGGGACATTAAAAATGGAGAAGCTAAAAATATTGCGAAATTATTCATTACATTAATAATAAAATAAATAAACATAAACAGTATTTAAGGGCATACAATATTGGGTCGAACATTTTTTGAATATCTCCTTATACACTACATTTGAAGTGGTGTTAATACAATCCTCATTGTCATCCGTTAATAATATCTTCAGACCATCCCTTGATGTAACACGTGATAATGCAACATATAGCTGCCCATGCGAGAAGACCGATTGTGGAAGATAGATGCCAACTTGCTTAAGTGATTGTCCTTGACTTTTGTTTATAGTCATTGCAAAACACACATATATAGGAAACTGTCTGCGTTGATATTTGAAAGGAATTCTGGTATCAGACGGTGTCAATGACAATCTTGGTATGTAGACCTTCTCTCCAACCTTGCTTCCTGATATAACCCTACCTTCAAGACATGTCTCTAGTTTATCAAACACATGCCAAAACAAATATAGTGAGCTAACCAAATCTGAACTGGTATAAAAACCATAAATTACCAATTTCAGGGTAATCATATTAAATCACATTTTATATGCAACCATATGAAGTGATCCAATTTCTATCCCATTGGCAACAAAAATGAACTTCCAATGTTATTAGGAAAAAAAAAACCATCAGGAACATAAAAAAAAATCATGATACAAAATTTCATTAACTTGCAATGCTCACTTTACATTTACAAACATTCGTGACACTACTAAACTTGATTTTCAGATCTTAACATGCCCCAAACAAAGCTACTTACTTTATAGCCAATTGTACATAGAGGTGAATATCAAGAGGAGGAATTTTCTGACCATGGGATGCACATGGTGAATCATGGTACGTAATACTGACTTGTAACAGCCGAACTTTAAGGAAATATTTACCAAGCAAAATAATTTACTGATGTCTAAATGTGGACCAATAAAAATGTACAGTCACACAGTTATGTGTTTCCTGTATATAAACCATTTAAAATATACGAAAACAATGGTTACCTGGTACACGCATAACACGCATGCTCAACAATAAGAACAAAAACTTGAGTTTTAAATGTCACCAGAATTAAGAATCAAAAGAAATTGAAGAGGCATATGCTCAACAATAAGAACAAAAACTTAAGAAATCCAACTATTCTATAATAGCTTGTTTTCGTTAATACATAAACTCTAAGCATAATCTCAGGCTTCTTACATTGAAATTTAGAATACAGCTACACTTTTAGTCACAATCAAACACTAATGTTTAATTTCCTTCATGTATCCACTGCTGATAGCACTAAATTAAACATAGCACTGCAATCATAGTTTTATGCAGGTTTTGGAGTGCATCCCCTCCCCACCGAGTAATTATATAGCATGTACATACTCTCATAACCTCTTCTCTTGTGTACAAAAGACAATTGGCATCATCCTTTTAGCCAAGCCCAATGCAAACTGAAACTCACAAAACAACAAATCAATACCTTCTTTTTTTAACATATCAATAATATCACAAACTATATAATAATCAACATTAACATATCAATACCTAAATACCTAAACAAAAAGCCATGTTATAAATATTTTGTAGAAAGAAAAATTAAAAACAAACATCCATGTTACAAATATATAGTAGCATTCCATCCCTGATTTGAGACGCCGTAAACAAATTCAAACAAAGTTATTAAATCACAGAAACAAAGGGGTTAAAAACAACTCCTTACATGTAAATCCTTTGAGAAACTAATGAACACTGCATACACAACCCACATAGACAATTGGTCTTCTCCATCGAACAGTCACTCTTTCGCCACCATCTTCGATCCATCAGATTTCGCATTTAAGAAATCCAATCAACCTTCACTTCTTATTTTCTTTCGTTTCATTATGTTGCCGCTGCCGCATCAAAGTTTCTTTCGCCATCAAAGTTTCAGTGTGGAGATGGGGATGATGTTAAGATTCAGATTTGAATTAGAATTGGAATTTTTTTCTAGCTCTCAATCTCATCGTTCTCAAAGTGGTTTCAGGTGAGGTTGCCGGAAGTGGAGGCGATGAGGGTGAAGAAGAAGAACAAACGAAATGA

Protein sequence

>MS.gene038676.t1

MASISNLSLSDEDDELEIPNDDIPNQSIDSSCSLVGRFLTNKPIRGYMMTEIIAEFWHPGRGVDIKEIEPNLFTFKFFHYRDMQRILKKGPWYFDNHLLILDVLPDNTPPKHIPLQSVPFWVQIHDIPTGFMTERVGKELGNFIGDFLEYDVKNKSNHLRSHMRIRVLIDVTKPLKRQKKIKRPGGETRMVKFKYERLGNFCYYCGTLGHNEDYCEKLYSVTNDDGVRHWGPELRVERQRNAGRRSKWLREEGQEWSPPSVSAGNGSAGADISNGPALNAAIPTSTTVNPINLLKNPHLLRPSKSNEFSGTTKSPHDEALNEENVETVITTNAKRSRAEFNANDMSADSSVKCHQNATHTPPEDNNLQTTPMQIGQTSSENKNSSTTENWIYYPSNNIVTKLSYCIEDMISWSKSNHPHFHSRIQQLRARIEDSRSSLAEPEALNLIVLKVVSGEVAGSGGDEGEEEEQTK