Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073573.t1 | AES70414.1 | 63.8 | 345 | 56 | 4 | 28 | 368 | 1 | 280 | 3.30E-110 | 408.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073573.t1 | O04244 | 25.7 | 136 | 97 | 2 | 110 | 243 | 6 | 139 | 1.8e-08 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073573.t1 | G7J017 | 63.8 | 345 | 56 | 4 | 28 | 368 | 1 | 280 | 2.4e-110 | 408.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073573.t1 | MTR_3g053920 | 63.768 | 345 | 56 | 4 | 28 | 368 | 1 | 280 | 3.27e-141 | 404 |
| MS.gene073573.t1 | MTR_2g061500 | 82.946 | 129 | 22 | 0 | 28 | 156 | 1 | 129 | 5.06e-75 | 230 |
| MS.gene073573.t1 | MTR_4g103530 | 80.412 | 97 | 19 | 0 | 82 | 178 | 1 | 97 | 1.61e-50 | 169 |
| MS.gene073573.t1 | MTR_4g103530 | 54.688 | 64 | 25 | 3 | 278 | 338 | 119 | 181 | 2.33e-11 | 63.2 |
| MS.gene073573.t1 | MTR_7g011710 | 69.048 | 84 | 26 | 0 | 82 | 165 | 1 | 84 | 7.25e-36 | 129 |
| MS.gene073573.t1 | MTR_6g033215 | 30.631 | 222 | 140 | 3 | 7 | 226 | 85 | 294 | 6.42e-31 | 120 |
| MS.gene073573.t1 | MTR_0010s0370 | 35.028 | 177 | 105 | 3 | 35 | 204 | 4 | 177 | 1.11e-30 | 117 |
| MS.gene073573.t1 | MTR_0010s0350 | 35.028 | 177 | 105 | 3 | 35 | 204 | 4 | 177 | 1.11e-30 | 117 |
| MS.gene073573.t1 | MTR_8g463110 | 63.636 | 110 | 37 | 1 | 314 | 420 | 1 | 110 | 8.92e-29 | 119 |
| MS.gene073573.t1 | MTR_1g036720 | 37.179 | 78 | 49 | 0 | 63 | 140 | 34 | 111 | 3.34e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073573.t1 | AT2G17920 | 26.636 | 214 | 149 | 5 | 35 | 243 | 9 | 219 | 2.10e-15 | 77.0 |
| MS.gene073573.t1 | AT3G31430 | 24.675 | 231 | 164 | 5 | 18 | 242 | 85 | 311 | 1.72e-14 | 74.7 |
| MS.gene073573.t1 | AT3G57587 | 26.147 | 218 | 147 | 6 | 34 | 243 | 8 | 219 | 5.06e-13 | 70.5 |
| MS.gene073573.t1 | AT5G36228 | 24.227 | 194 | 141 | 4 | 63 | 253 | 39 | 229 | 1.21e-12 | 69.3 |
| MS.gene073573.t1 | AT2G41590 | 25.676 | 222 | 141 | 6 | 35 | 243 | 9 | 219 | 1.60e-12 | 68.9 |
Find 111 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGAATCACATTGATTTC+TGG | 0.057421 | 1.1:-33988659 | MS.gene073573:CDS |
| CTGATGACGGTGTTCGTAAT+TGG | 0.216769 | 1.1:-33988338 | MS.gene073573:CDS |
| CATCGACCTTGTGGTGAAAT+TGG | 0.247896 | 1.1:+33988775 | None:intergenic |
| GAGGAGTCTCTTGATGTTAC+TGG | 0.263036 | 1.1:-33981635 | MS.gene073573:CDS |
| GATTCCAGCTCAAACAATTC+TGG | 0.273451 | 1.1:+33988360 | None:intergenic |
| TGACATACGCTCGCTGAAAT+AGG | 0.282731 | 1.1:+33988860 | None:intergenic |
| CAGGCTCAGATGCGAGGTTT+AGG | 0.291241 | 1.1:+33988949 | None:intergenic |
| AGGTTAGACCATCGATATTA+AGG | 0.291923 | 1.1:+33988991 | None:intergenic |
| TCTGAATCACATTGATTTCT+GGG | 0.299773 | 1.1:-33988658 | MS.gene073573:CDS |
| ATTAAGGTTGTTGGGATTCA+TGG | 0.300482 | 1.1:+33989007 | None:intergenic |
| GCGACCATCATAAGACTTAA+AGG | 0.327355 | 1.1:+33988563 | None:intergenic |
| GTCTGGTCGTGAATTGGTGC+TGG | 0.350461 | 1.1:-33981693 | MS.gene073573:CDS |
| TGATGACGGTGTTCGTAATT+GGG | 0.360979 | 1.1:-33988337 | MS.gene073573:CDS |
| AGGCTCAGATGCGAGGTTTA+GGG | 0.361247 | 1.1:+33988950 | None:intergenic |
| GTTTGGCCTTTGCAGCGACT+TGG | 0.375304 | 1.1:+33988094 | None:intergenic |
| TCCTTTGAGTGACTGGCTTA+AGG | 0.377764 | 1.1:+33988307 | None:intergenic |
| ACTCCTCACAGCCAGCATTA+AGG | 0.380531 | 1.1:+33981651 | None:intergenic |
| CATGGACACAGTTTCGAAAC+AGG | 0.383688 | 1.1:+33989025 | None:intergenic |
| GGCAGACCGAAAACAGTAAC+AGG | 0.393384 | 1.1:+33989077 | None:intergenic |
| ACCATCGATATTAAGGTTGT+TGG | 0.403347 | 1.1:+33988998 | None:intergenic |
| CAGCAAGGACACGACCGATT+AGG | 0.408317 | 1.1:+33988901 | None:intergenic |
| CCATCGATATTAAGGTTGTT+GGG | 0.411779 | 1.1:+33988999 | None:intergenic |
| TCGTGAATTGGTGCTGGGTT+TGG | 0.415160 | 1.1:-33981687 | MS.gene073573:CDS |
| TACCTTGATCTACTTTCTGT+TGG | 0.419268 | 1.1:+33988604 | None:intergenic |
| TCAGCTTCAAACTTGTTGTC+TGG | 0.419576 | 1.1:-33981710 | MS.gene073573:intron |
| GGTTAAACCCTCCTTTGATA+AGG | 0.420287 | 1.1:+33988971 | None:intergenic |
| CAAGGGAACAATTACATCAA+TGG | 0.425045 | 1.1:+33988503 | None:intergenic |
| CAAGTCCACGGTCTACCCTT+TGG | 0.428096 | 1.1:-33988633 | MS.gene073573:CDS |
| ACTAGCACCTGAACTGTGTT+TGG | 0.428126 | 1.1:+33988077 | None:intergenic |
| GTTCTCGAAGATTGCCTAAT+CGG | 0.431059 | 1.1:-33988915 | MS.gene073573:CDS |
| GAATCATCATTTGCTACTGA+TGG | 0.431716 | 1.1:-33981563 | MS.gene073573:CDS |
| GATAGGCCATTCTTGTTTCA+AGG | 0.431870 | 1.1:+33988485 | None:intergenic |
| GTGATTCAGAGAGACAAAAC+TGG | 0.433322 | 1.1:+33988671 | None:intergenic |
| CTTGTTGTCTGGTCGTGAAT+TGG | 0.433519 | 1.1:-33981699 | MS.gene073573:CDS |
| GAACCTATCCTTTGAGTGAC+TGG | 0.441871 | 1.1:+33988300 | None:intergenic |
| GGTACCTTTAAGTCTTATGA+TGG | 0.448301 | 1.1:-33988567 | MS.gene073573:CDS |
| AAGAAAGTGACAAGGAAAAC+AGG | 0.449653 | 1.1:+33989056 | None:intergenic |
| ATGTGTCGCGGTACTGAAGC+AGG | 0.450223 | 1.1:+33988243 | None:intergenic |
| TCGAGAACAGCAGCAGTGTC+AGG | 0.453990 | 1.1:+33988930 | None:intergenic |
| ATGTCACGTGCTTGGAAGCC+AGG | 0.454165 | 1.1:-33988843 | MS.gene073573:CDS |
| TAGGTTCTGCTGCAACTAAC+CGG | 0.454487 | 1.1:-33988284 | MS.gene073573:CDS |
| GCAAAGGCCAAACACAGTTC+AGG | 0.457645 | 1.1:-33988084 | MS.gene073573:CDS |
| GTAATCGTAACTTTCTTGCC+TGG | 0.459905 | 1.1:+33988825 | None:intergenic |
| TTGGTGCTGGGTTTGGCTGT+TGG | 0.459915 | 1.1:-33981680 | MS.gene073573:CDS |
| CTGGTTCCGATTTGAAGAAA+AGG | 0.462538 | 1.1:-33981616 | MS.gene073573:CDS |
| GTTGGTCCGTTCCTTAATGC+TGG | 0.470925 | 1.1:-33981662 | MS.gene073573:CDS |
| ATTCCAGCTCAAACAATTCT+GGG | 0.477103 | 1.1:+33988361 | None:intergenic |
| ACAAAACTGGGTACGACACC+AGG | 0.483362 | 1.1:+33988684 | None:intergenic |
| TTCTGTTGGATGAAACCAAA+GGG | 0.491366 | 1.1:+33988618 | None:intergenic |
| ATTTGCTACTGATGGGGATG+AGG | 0.491773 | 1.1:-33981555 | MS.gene073573:CDS |
| TGCAACTAACCGGTGGCTAC+AGG | 0.493637 | 1.1:-33988274 | MS.gene073573:CDS |
| TTATAGAAGTTAATTGACTC+TGG | 0.497479 | 1.1:+33988136 | None:intergenic |
| TTGTTCCCTTGAAACAAGAA+TGG | 0.500526 | 1.1:-33988491 | MS.gene073573:CDS |
| GAATACGCATATAAGAGTTA+TGG | 0.501914 | 1.1:+33988532 | None:intergenic |
| CGCGGTACTGAAGCAGGGAT+AGG | 0.503771 | 1.1:+33988249 | None:intergenic |
| CACTGCCCAAGTCGCTGCAA+AGG | 0.507043 | 1.1:-33988100 | MS.gene073573:CDS |
| TCTGGTCGTGAATTGGTGCT+GGG | 0.507773 | 1.1:-33981692 | MS.gene073573:CDS |
| AAATTACCTGTTGAGGAAGA+AGG | 0.508087 | 1.1:+33988030 | None:intergenic |
| GTACGACACCAGGGGAAATC+CGG | 0.510073 | 1.1:+33988694 | None:intergenic |
| AATCATCATTTGCTACTGAT+GGG | 0.512878 | 1.1:-33981562 | MS.gene073573:CDS |
| ATGATTCTTCACCATTCTGA+AGG | 0.517798 | 1.1:+33981579 | None:intergenic |
| CAAAGGAACTGTTGCTAGCA+CGG | 0.524259 | 1.1:+33988463 | None:intergenic |
| ATTATGGACCGGATTTCCCC+TGG | 0.526899 | 1.1:-33988702 | MS.gene073573:CDS |
| GTGCCCAGAATTGTTTGAGC+TGG | 0.531217 | 1.1:-33988364 | MS.gene073573:CDS |
| TTTGGCCTTTGCAGCGACTT+GGG | 0.532857 | 1.1:+33988095 | None:intergenic |
| GCGGTACTGAAGCAGGGATA+GGG | 0.542585 | 1.1:+33988250 | None:intergenic |
| CCCAACAACCTTAATATCGA+TGG | 0.549360 | 1.1:-33988999 | MS.gene073573:CDS |
| GATTTCTGGGTGCAAGTCCA+CGG | 0.551953 | 1.1:-33988645 | MS.gene073573:CDS |
| ATAGGCCATTCTTGTTTCAA+GGG | 0.552281 | 1.1:+33988486 | None:intergenic |
| ACTCATCAAATTACCTGTTG+AGG | 0.553898 | 1.1:+33988023 | None:intergenic |
| TTTAAAATTAATCGTAACAA+AGG | 0.555344 | 1.1:+33988446 | None:intergenic |
| GCGAGCGTATGTCACGTGCT+TGG | 0.557701 | 1.1:-33988851 | MS.gene073573:CDS |
| TTTGCTACTGATGGGGATGA+GGG | 0.559100 | 1.1:-33981554 | MS.gene073573:CDS |
| ATCCAACAGAAAGTAGATCA+AGG | 0.569377 | 1.1:-33988606 | MS.gene073573:CDS |
| CGATGGTCTAACCTTATCAA+AGG | 0.570520 | 1.1:-33988982 | MS.gene073573:CDS |
| AAGCCAGTCACTCAAAGGAT+AGG | 0.571341 | 1.1:-33988303 | MS.gene073573:CDS |
| GCTGCACGCATCCTTGATGA+AGG | 0.577101 | 1.1:-33988753 | MS.gene073573:CDS |
| TCTGTTGCATTTCGACCAGC+GGG | 0.577444 | 1.1:+33988204 | None:intergenic |
| CTTGTTCCAATTTCACCACA+AGG | 0.581975 | 1.1:-33988781 | MS.gene073573:CDS |
| GAAGAAAAGGAAGAGAATGC+TGG | 0.582814 | 1.1:-33981603 | MS.gene073573:CDS |
| ACCTTAAGCCAGTCACTCAA+AGG | 0.584072 | 1.1:-33988308 | MS.gene073573:CDS |
| AATGATGCTGTTGTTCCCGC+TGG | 0.587827 | 1.1:-33988219 | MS.gene073573:CDS |
| AGAATGCTGGCCCTTCAGAA+TGG | 0.591615 | 1.1:-33981590 | MS.gene073573:CDS |
| ATCTGTTGCATTTCGACCAG+CGG | 0.591692 | 1.1:+33988203 | None:intergenic |
| GGTCTAACCTTATCAAAGGA+GGG | 0.593790 | 1.1:-33988978 | MS.gene073573:CDS |
| GGTCGAAATGCAACAGATGG+TGG | 0.597642 | 1.1:-33988198 | MS.gene073573:CDS |
| TGGTCTAACCTTATCAAAGG+AGG | 0.600301 | 1.1:-33988979 | MS.gene073573:CDS |
| GAACTGTTGCTAGCACGGAT+AGG | 0.604920 | 1.1:+33988468 | None:intergenic |
| AAACACAGTTCAGGTGCTAG+TGG | 0.606555 | 1.1:-33988075 | MS.gene073573:CDS |
| ACAGCCACGGACCTTCATCA+AGG | 0.610826 | 1.1:+33988742 | None:intergenic |
| GATGACGGTGTTCGTAATTG+GGG | 0.611582 | 1.1:-33988336 | MS.gene073573:CDS |
| TGATTCTTCACCATTCTGAA+GGG | 0.621952 | 1.1:+33981580 | None:intergenic |
| GCTGGTCGAAATGCAACAGA+TGG | 0.622518 | 1.1:-33988201 | MS.gene073573:CDS |
| GGATAGGGTCCTGTAGCCAC+CGG | 0.627094 | 1.1:+33988265 | None:intergenic |
| ATCATCATTTGCTACTGATG+GGG | 0.628490 | 1.1:-33981561 | MS.gene073573:CDS |
| CAGTGTCAGGCTCAGATGCG+AGG | 0.632572 | 1.1:+33988943 | None:intergenic |
| TTTCTGTTGGATGAAACCAA+AGG | 0.643348 | 1.1:+33988617 | None:intergenic |
| AAACGATGAAGAAAGTGACA+AGG | 0.652384 | 1.1:+33989048 | None:intergenic |
| GCATCCTTGATGAAGGTCCG+TGG | 0.657441 | 1.1:-33988746 | MS.gene073573:CDS |
| TCACAGCCAGCATTAAGGAA+CGG | 0.664582 | 1.1:+33981656 | None:intergenic |
| TGTGTCGCGGTACTGAAGCA+GGG | 0.664643 | 1.1:+33988244 | None:intergenic |
| GTTCCTTAATGCTGGCTGTG+AGG | 0.666664 | 1.1:-33981654 | MS.gene073573:CDS |
| TTTGAGCTGGAATCTGATGA+CGG | 0.667631 | 1.1:-33988351 | MS.gene073573:CDS |
| TGAAAATTATCATACAGCCA+CGG | 0.673079 | 1.1:+33988729 | None:intergenic |
| CAAAACTGGGTACGACACCA+GGG | 0.677507 | 1.1:+33988685 | None:intergenic |
| ACAGCATCATTTATGTGTCG+CGG | 0.684400 | 1.1:+33988231 | None:intergenic |
| GTTCTGCTGCAACTAACCGG+TGG | 0.700184 | 1.1:-33988281 | MS.gene073573:CDS |
| TGATTCAGAGAGACAAAACT+GGG | 0.701308 | 1.1:+33988672 | None:intergenic |
| AAAACTGGGTACGACACCAG+GGG | 0.702625 | 1.1:+33988686 | None:intergenic |
| TGCGTGCAGCATCGACCTTG+TGG | 0.712710 | 1.1:+33988766 | None:intergenic |
| TGAAACCAAAGGGTAGACCG+TGG | 0.726358 | 1.1:+33988628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 33981538 | 33989108 | 33981538 | ID=MS.gene073573 |
| chr1.1 | mRNA | 33981538 | 33989108 | 33981538 | ID=MS.gene073573.t1;Parent=MS.gene073573 |
| chr1.1 | exon | 33988037 | 33989108 | 33988037 | ID=MS.gene073573.t1.exon1;Parent=MS.gene073573.t1 |
| chr1.1 | CDS | 33988037 | 33989108 | 33988037 | ID=cds.MS.gene073573.t1;Parent=MS.gene073573.t1 |
| chr1.1 | exon | 33981538 | 33981728 | 33981538 | ID=MS.gene073573.t1.exon2;Parent=MS.gene073573.t1 |
| chr1.1 | CDS | 33981538 | 33981728 | 33981538 | ID=cds.MS.gene073573.t1;Parent=MS.gene073573.t1 |
| Gene Sequence |
| Protein sequence |