Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047954.t1 | PNX72859.1 | 59.1 | 66 | 27 | 0 | 1 | 66 | 123 | 188 | 5.00E-14 | 88.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047954.t1 | A0A2K3L2W5 | 59.1 | 66 | 27 | 0 | 1 | 66 | 123 | 188 | 3.6e-14 | 88.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047954.t1 | MTR_3g053920 | 52.381 | 63 | 30 | 0 | 2 | 64 | 5 | 67 | 2.54e-17 | 80.1 |
| MS.gene047954.t1 | MTR_2g061500 | 51.613 | 62 | 30 | 0 | 3 | 64 | 6 | 67 | 1.24e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTTCGCTTACGCAATTC+AGG | 0.198053 | 2.4:-64628658 | None:intergenic |
| CAAGCCTGACACATGGAAAA+TGG | 0.269471 | 2.4:+64628279 | MS.gene047954:CDS |
| TCTCGGCGGGCCTGGTGTTC+AGG | 0.283411 | 2.4:-64628844 | None:intergenic |
| GCTCAATCGTTGCTTAAAAT+AGG | 0.321970 | 2.4:-64627723 | None:intergenic |
| ACTGCCTGGAGACCAGTTAA+AGG | 0.333601 | 2.4:+64627746 | MS.gene047954:CDS |
| ACAAAGAGCAAGAGGATTAA+AGG | 0.347381 | 2.4:-64628524 | None:intergenic |
| CTCATTGCTCTCGGCGGGCC+TGG | 0.364529 | 2.4:-64628852 | None:intergenic |
| ACAAAGAACTTGACTCAATA+AGG | 0.372570 | 2.4:+64628476 | MS.gene047954:CDS |
| AATCCTCTTGCTCTTTGTGC+AGG | 0.386155 | 2.4:+64628529 | MS.gene047954:CDS |
| ATAATATCAACGCCTTTAAC+TGG | 0.387554 | 2.4:-64627758 | None:intergenic |
| CTAGTGCTGATATGTCTGTT+AGG | 0.388402 | 2.4:+64628782 | MS.gene047954:CDS |
| ACAGCCTACTGTCCTTGCTT+TGG | 0.404265 | 2.4:+64628603 | MS.gene047954:CDS |
| TGGGCACGACAGCAACAAAT+AGG | 0.404872 | 2.4:+64628299 | MS.gene047954:CDS |
| GATCAAGTATGACAGAGTTC+TGG | 0.410717 | 2.4:-64627655 | None:intergenic |
| CTTCTAAAGTGAGGCCATCT+AGG | 0.411232 | 2.4:-64627598 | None:intergenic |
| TCTTTCCCACCAGCCTTTGA+AGG | 0.423213 | 2.4:-64628553 | None:intergenic |
| ACCATGGACATTAACCTAGA+TGG | 0.427427 | 2.4:+64627584 | None:intergenic |
| GGACAGAAGCATCAAGCTCC+AGG | 0.449338 | 2.4:-64627634 | None:intergenic |
| TGTGCAGGTCCTTCAAAGGC+TGG | 0.454522 | 2.4:+64628544 | MS.gene047954:CDS |
| AAGCCTGACACATGGAAAAT+GGG | 0.471795 | 2.4:+64628280 | MS.gene047954:CDS |
| ATACTTGATCACTGTCTCAT+TGG | 0.475134 | 2.4:+64627668 | MS.gene047954:CDS |
| TGACCGCATAGCAGAGGTAT+TGG | 0.475228 | 2.4:-64628428 | None:intergenic |
| AAGTGGTTCGAGCAGTGCTC+TGG | 0.475420 | 2.4:+64628351 | MS.gene047954:CDS |
| GCCTACTGTCCTTGCTTTGG+AGG | 0.480598 | 2.4:+64628606 | MS.gene047954:CDS |
| AACGCCTTTAACTGGTCTCC+AGG | 0.483494 | 2.4:-64627750 | None:intergenic |
| TCTTTGTGCAGGTCCTTCAA+AGG | 0.493593 | 2.4:+64628540 | MS.gene047954:CDS |
| TGGTCGTGTCCTCACTGATA+AGG | 0.499925 | 2.4:+64627688 | MS.gene047954:CDS |
| AGCAACGATTGAGCACTGCC+TGG | 0.504028 | 2.4:+64627732 | MS.gene047954:CDS |
| GTTGATATTATCCCCACAAC+TGG | 0.504233 | 2.4:+64627770 | MS.gene047954:CDS |
| TGATACTCATTGCTCTCGGC+GGG | 0.522076 | 2.4:-64628857 | None:intergenic |
| GAAAATGATGTAATAACGGC+GGG | 0.526538 | 2.4:+64628820 | MS.gene047954:CDS |
| AGGTATCGATTACCAGTTGT+GGG | 0.528868 | 2.4:-64627782 | None:intergenic |
| TAGTGCTGATATGTCTGTTA+GGG | 0.529972 | 2.4:+64628783 | MS.gene047954:CDS |
| ATTTGAAAATGATGTAATAA+CGG | 0.531467 | 2.4:+64628816 | MS.gene047954:CDS |
| CTGATGATGGTCTGCGAGGG+TGG | 0.536455 | 2.4:+64628245 | MS.gene047954:CDS |
| GCCATCTAGGTTAATGTCCA+TGG | 0.537983 | 2.4:-64627585 | None:intergenic |
| ACCTCTGCTATGCGGTCACT+AGG | 0.538899 | 2.4:+64628433 | MS.gene047954:CDS |
| GGCCTCACTTTAGAAGATGA+AGG | 0.576806 | 2.4:+64627605 | MS.gene047954:CDS |
| AACGGCGGGACCTGAACACC+AGG | 0.587595 | 2.4:+64628834 | MS.gene047954:CDS |
| ATGATACTCATTGCTCTCGG+CGG | 0.590230 | 2.4:-64628858 | None:intergenic |
| CTAGTATCAAGCCTGACACA+TGG | 0.592830 | 2.4:+64628272 | MS.gene047954:CDS |
| TGCTCTGGCAAGTACAGATG+CGG | 0.593194 | 2.4:+64628366 | MS.gene047954:CDS |
| CAGGTATCGATTACCAGTTG+TGG | 0.598861 | 2.4:-64627783 | None:intergenic |
| GCTATGATACTCATTGCTCT+CGG | 0.599395 | 2.4:-64628861 | None:intergenic |
| CAGGTCCTTCAAAGGCTGGT+GGG | 0.599889 | 2.4:+64628548 | MS.gene047954:CDS |
| GCAGGTCCTTCAAAGGCTGG+TGG | 0.604222 | 2.4:+64628547 | MS.gene047954:CDS |
| AGAAGATGAAGGTATGACCC+TGG | 0.604670 | 2.4:+64627616 | MS.gene047954:CDS |
| TACCTTCATCTTCTAAAGTG+AGG | 0.608632 | 2.4:-64627607 | None:intergenic |
| GGACCTGCACAAAGAGCAAG+AGG | 0.610336 | 2.4:-64628532 | None:intergenic |
| GTGCAGTCAAGTGACTCAGT+GGG | 0.610418 | 2.4:+64628388 | MS.gene047954:CDS |
| GACAGAAGCATCAAGCTCCA+GGG | 0.616389 | 2.4:-64627633 | None:intergenic |
| TTGGTACGGCCTCCAAAGCA+AGG | 0.617470 | 2.4:-64628615 | None:intergenic |
| TGGCTAAGAGATCATGTCAA+GGG | 0.618041 | 2.4:+64628322 | MS.gene047954:CDS |
| CTGCTATGCGGTCACTAGGA+GGG | 0.620606 | 2.4:+64628437 | MS.gene047954:CDS |
| TCCTAGTGACCGCATAGCAG+AGG | 0.623182 | 2.4:-64628434 | None:intergenic |
| TATGACAAAGAAACTGATGA+TGG | 0.628877 | 2.4:+64628232 | MS.gene047954:intron |
| TCTGCTATGCGGTCACTAGG+AGG | 0.638464 | 2.4:+64628436 | MS.gene047954:CDS |
| GCCTCCAAAGCAAGGACAGT+AGG | 0.643075 | 2.4:-64628607 | None:intergenic |
| CATGTCAAGGGTGAATCAAG+TGG | 0.648644 | 2.4:+64628334 | MS.gene047954:CDS |
| TCGTGTCCTCACTGATAAGG+AGG | 0.650148 | 2.4:+64627691 | MS.gene047954:CDS |
| TGAAAATGATGTAATAACGG+CGG | 0.654101 | 2.4:+64628819 | MS.gene047954:CDS |
| GGTGCAGTCAAGTGACTCAG+TGG | 0.659597 | 2.4:+64628387 | MS.gene047954:CDS |
| GTGGCTAAGAGATCATGTCA+AGG | 0.659956 | 2.4:+64628321 | MS.gene047954:CDS |
| GCACGACAGCAACAAATAGG+TGG | 0.682280 | 2.4:+64628302 | MS.gene047954:CDS |
| GAAACTGATGATGGTCTGCG+AGG | 0.703756 | 2.4:+64628241 | MS.gene047954:intron |
| AAACTGATGATGGTCTGCGA+GGG | 0.705490 | 2.4:+64628242 | MS.gene047954:CDS |
| ATCGCACCTCCTTATCAGTG+AGG | 0.721008 | 2.4:-64627697 | None:intergenic |
| ATGCCAATACCTCTGCTATG+CGG | 0.724662 | 2.4:+64628425 | MS.gene047954:CDS |
| GGTATCGATTACCAGTTGTG+GGG | 0.732973 | 2.4:-64627781 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAAAATGATGTAATAA+CGG | + | chr2.4:64628816-64628835 | MS.gene047954:CDS | 15.0% |
| !!! | ATTACATCATTTTCAAATAC+AGG | - | chr2.4:64628814-64628833 | None:intergenic | 20.0% |
| !!! | TTACATCATTTTCAAATACA+GGG | - | chr2.4:64628813-64628832 | None:intergenic | 20.0% |
| !!! | CATCATTTTTGTGATTGAAT+TGG | - | chr2.4:64627811-64627830 | None:intergenic | 25.0% |
| ACAAAGAACTTGACTCAATA+AGG | + | chr2.4:64628476-64628495 | MS.gene047954:CDS | 30.0% | |
| ACTGTTCAAATATGAGAAGT+TGG | + | chr2.4:64628150-64628169 | MS.gene047954:intron | 30.0% | |
| ATAATATCAACGCCTTTAAC+TGG | - | chr2.4:64627761-64627780 | None:intergenic | 30.0% | |
| CTGTTCAAATATGAGAAGTT+GGG | + | chr2.4:64628151-64628170 | MS.gene047954:intron | 30.0% | |
| TAGTCATGAAGTAGAAAAAG+TGG | + | chr2.4:64628747-64628766 | MS.gene047954:CDS | 30.0% | |
| TATGACAAAGAAACTGATGA+TGG | + | chr2.4:64628232-64628251 | MS.gene047954:intron | 30.0% | |
| TCAACTTCATAAACATGCTA+TGG | - | chr2.4:64628054-64628073 | None:intergenic | 30.0% | |
| TGAAAATGATGTAATAACGG+CGG | + | chr2.4:64628819-64628838 | MS.gene047954:CDS | 30.0% | |
| TGTTCAAATATGAGAAGTTG+GGG | + | chr2.4:64628152-64628171 | MS.gene047954:intron | 30.0% | |
| TTCAATTGCATAAACCCAAA+TGG | - | chr2.4:64627968-64627987 | None:intergenic | 30.0% | |
| ! | AAATCCAGACAGACATTTTT+CGG | - | chr2.4:64627914-64627933 | None:intergenic | 30.0% |
| ! | ATCATTTTCAGCATTTGGTA+CGG | - | chr2.4:64628632-64628651 | None:intergenic | 30.0% |
| ! | ATTTGGGTTTATGCAATTGA+AGG | + | chr2.4:64627967-64627986 | MS.gene047954:intron | 30.0% |
| ! | TTTTGTGATTGAATTGGAAC+AGG | - | chr2.4:64627805-64627824 | None:intergenic | 30.0% |
| !!! | TTTTTTGAATATCTCTGTGC+AGG | + | chr2.4:64627931-64627950 | MS.gene047954:intron | 30.0% |
| ACAAAGAGCAAGAGGATTAA+AGG | - | chr2.4:64628527-64628546 | None:intergenic | 35.0% | |
| AGGTACATAACCTTCCATTT+GGG | + | chr2.4:64627951-64627970 | MS.gene047954:intron | 35.0% | |
| ATACTTGATCACTGTCTCAT+TGG | + | chr2.4:64627668-64627687 | MS.gene047954:CDS | 35.0% | |
| ATTGCATAAACCCAAATGGA+AGG | - | chr2.4:64627964-64627983 | None:intergenic | 35.0% | |
| CAAGCAATTGGTAAGTACTT+GGG | + | chr2.4:64627995-64628014 | MS.gene047954:intron | 35.0% | |
| GAAAATGATGTAATAACGGC+GGG | + | chr2.4:64628820-64628839 | MS.gene047954:CDS | 35.0% | |
| GACGTATGATAACTGCAATT+TGG | + | chr2.4:64627859-64627878 | MS.gene047954:intron | 35.0% | |
| GCTCAATCGTTGCTTAAAAT+AGG | - | chr2.4:64627726-64627745 | None:intergenic | 35.0% | |
| GGTTTATGCAATTGAAGGTA+GGG | + | chr2.4:64627972-64627991 | MS.gene047954:intron | 35.0% | |
| TGATGCTGAAAATGTTCTGA+AGG | + | chr2.4:64627826-64627845 | MS.gene047954:intron | 35.0% | |
| TTTGTCATACAACATCTCAC+AGG | - | chr2.4:64628221-64628240 | None:intergenic | 35.0% | |
| ! | CTCTCATCATTTTCAGCATT+TGG | - | chr2.4:64628637-64628656 | None:intergenic | 35.0% |
| !! | AGTGTTGAGTTCTGATTTTG+CGG | + | chr2.4:64628579-64628598 | MS.gene047954:CDS | 35.0% |
| !! | TACCTTCATCTTCTAAAGTG+AGG | - | chr2.4:64627610-64627629 | None:intergenic | 35.0% |
| !! | TAGTGCTGATATGTCTGTTA+GGG | + | chr2.4:64628783-64628802 | MS.gene047954:CDS | 35.0% |
| AAGCCTGACACATGGAAAAT+GGG | + | chr2.4:64628280-64628299 | MS.gene047954:CDS | 40.0% | |
| CAGGTACATAACCTTCCATT+TGG | + | chr2.4:64627950-64627969 | MS.gene047954:intron | 40.0% | |
| GATCAAGTATGACAGAGTTC+TGG | - | chr2.4:64627658-64627677 | None:intergenic | 40.0% | |
| GATTCCGAAAAATGTCTGTC+TGG | + | chr2.4:64627907-64627926 | MS.gene047954:intron | 40.0% | |
| GCAAGCAATTGGTAAGTACT+TGG | + | chr2.4:64627994-64628013 | MS.gene047954:intron | 40.0% | |
| GGGTTTATGCAATTGAAGGT+AGG | + | chr2.4:64627971-64627990 | MS.gene047954:intron | 40.0% | |
| GTTGATATTATCCCCACAAC+TGG | + | chr2.4:64627770-64627789 | MS.gene047954:CDS | 40.0% | |
| TAAGTACTTGGGTGAGTTCT+TGG | + | chr2.4:64628006-64628025 | MS.gene047954:intron | 40.0% | |
| TGGCTAAGAGATCATGTCAA+GGG | + | chr2.4:64628322-64628341 | MS.gene047954:CDS | 40.0% | |
| TTGCAGTTATCATACGTCCA+CGG | - | chr2.4:64627857-64627876 | None:intergenic | 40.0% | |
| !! | ACATTTTTCGGAATCATGCC+AGG | - | chr2.4:64627902-64627921 | None:intergenic | 40.0% |
| !! | AGGTATCGATTACCAGTTGT+GGG | - | chr2.4:64627785-64627804 | None:intergenic | 40.0% |
| !! | CAAAGCCTTTAAAGCAAGAG+TGG | + | chr2.4:64628092-64628111 | MS.gene047954:intron | 40.0% |
| !! | CTAGTGCTGATATGTCTGTT+AGG | + | chr2.4:64628782-64628801 | MS.gene047954:CDS | 40.0% |
| !! | GCTGAAAATGTTCTGAAGGA+TGG | + | chr2.4:64627830-64627849 | MS.gene047954:intron | 40.0% |
| AATCCTCTTGCTCTTTGTGC+AGG | + | chr2.4:64628529-64628548 | MS.gene047954:CDS | 45.0% | |
| ACCTGCCACTCTTGCTTTAA+AGG | - | chr2.4:64628100-64628119 | None:intergenic | 45.0% | |
| ATGCCAATACCTCTGCTATG+CGG | + | chr2.4:64628425-64628444 | MS.gene047954:CDS | 45.0% | |
| CAACATCTCACAGGTACGAT+CGG | - | chr2.4:64628212-64628231 | None:intergenic | 45.0% | |
| CAAGCCTGACACATGGAAAA+TGG | + | chr2.4:64628279-64628298 | MS.gene047954:CDS | 45.0% | |
| CATGTCAAGGGTGAATCAAG+TGG | + | chr2.4:64628334-64628353 | MS.gene047954:CDS | 45.0% | |
| CTAGTATCAAGCCTGACACA+TGG | + | chr2.4:64628272-64628291 | MS.gene047954:CDS | 45.0% | |
| GTGATTGAAAGAATTGCGCC+TGG | + | chr2.4:64627881-64627900 | MS.gene047954:intron | 45.0% | |
| GTGGCTAAGAGATCATGTCA+AGG | + | chr2.4:64628321-64628340 | MS.gene047954:CDS | 45.0% | |
| TCTTTGTGCAGGTCCTTCAA+AGG | + | chr2.4:64628540-64628559 | MS.gene047954:CDS | 45.0% | |
| TTGAAGGTAGGGCAAGCAAT+TGG | + | chr2.4:64627983-64628002 | MS.gene047954:intron | 45.0% | |
| ! | AGAAGATGAAGGTATGACCC+TGG | + | chr2.4:64627616-64627635 | MS.gene047954:CDS | 45.0% |
| ! | GGCCTCACTTTAGAAGATGA+AGG | + | chr2.4:64627605-64627624 | MS.gene047954:CDS | 45.0% |
| !! | AAACTGATGATGGTCTGCGA+GGG | + | chr2.4:64628242-64628261 | MS.gene047954:CDS | 45.0% |
| !! | CAGGTATCGATTACCAGTTG+TGG | - | chr2.4:64627786-64627805 | None:intergenic | 45.0% |
| !! | CTTCTAAAGTGAGGCCATCT+AGG | - | chr2.4:64627601-64627620 | None:intergenic | 45.0% |
| !! | GGTATCGATTACCAGTTGTG+GGG | - | chr2.4:64627784-64627803 | None:intergenic | 45.0% |
| ACAGCCTACTGTCCTTGCTT+TGG | + | chr2.4:64628603-64628622 | MS.gene047954:CDS | 50.0% | |
| ACTGCCTGGAGACCAGTTAA+AGG | + | chr2.4:64627746-64627765 | MS.gene047954:CDS | 50.0% | |
| ATCGCACCTCCTTATCAGTG+AGG | - | chr2.4:64627700-64627719 | None:intergenic | 50.0% | |
| CGCTTTCGCTTACGCAATTC+AGG | - | chr2.4:64628661-64628680 | None:intergenic | 50.0% | |
| GCACGACAGCAACAAATAGG+TGG | + | chr2.4:64628302-64628321 | MS.gene047954:CDS | 50.0% | |
| GTGCAGTCAAGTGACTCAGT+GGG | + | chr2.4:64628388-64628407 | MS.gene047954:CDS | 50.0% | |
| TCGTGTCCTCACTGATAAGG+AGG | + | chr2.4:64627691-64627710 | MS.gene047954:CDS | 50.0% | |
| TCTTTCCCACCAGCCTTTGA+AGG | - | chr2.4:64628556-64628575 | None:intergenic | 50.0% | |
| TGCTCTGGCAAGTACAGATG+CGG | + | chr2.4:64628366-64628385 | MS.gene047954:CDS | 50.0% | |
| TGCTTTGCGTGTGGTGTCTT+AGG | + | chr2.4:64628181-64628200 | MS.gene047954:intron | 50.0% | |
| TGGGCACGACAGCAACAAAT+AGG | + | chr2.4:64628299-64628318 | MS.gene047954:CDS | 50.0% | |
| TGGTCGTGTCCTCACTGATA+AGG | + | chr2.4:64627688-64627707 | MS.gene047954:CDS | 50.0% | |
| ! | AACGCCTTTAACTGGTCTCC+AGG | - | chr2.4:64627753-64627772 | None:intergenic | 50.0% |
| ! | GTGCCCATTTTCCATGTGTC+AGG | - | chr2.4:64628286-64628305 | None:intergenic | 50.0% |
| ! | TGACCGCATAGCAGAGGTAT+TGG | - | chr2.4:64628431-64628450 | None:intergenic | 50.0% |
| !! | ATGTTCTGAAGGATGGACCG+TGG | + | chr2.4:64627837-64627856 | MS.gene047954:intron | 50.0% |
| !! | GAAACTGATGATGGTCTGCG+AGG | + | chr2.4:64628241-64628260 | MS.gene047954:intron | 50.0% |
| !! | GACAGAAGCATCAAGCTCCA+GGG | - | chr2.4:64627636-64627655 | None:intergenic | 50.0% |
| !! | GCCTTTAAAGCAAGAGTGGC+AGG | + | chr2.4:64628096-64628115 | MS.gene047954:intron | 50.0% |
| AAGTGGTTCGAGCAGTGCTC+TGG | + | chr2.4:64628351-64628370 | MS.gene047954:CDS | 55.0% | |
| ACCTCTGCTATGCGGTCACT+AGG | + | chr2.4:64628433-64628452 | MS.gene047954:CDS | 55.0% | |
| CAGGTCCTTCAAAGGCTGGT+GGG | + | chr2.4:64628548-64628567 | MS.gene047954:CDS | 55.0% | |
| CTGCTATGCGGTCACTAGGA+GGG | + | chr2.4:64628437-64628456 | MS.gene047954:CDS | 55.0% | |
| GCCTACTGTCCTTGCTTTGG+AGG | + | chr2.4:64628606-64628625 | MS.gene047954:CDS | 55.0% | |
| GCCTCCAAAGCAAGGACAGT+AGG | - | chr2.4:64628610-64628629 | None:intergenic | 55.0% | |
| GGACCTGCACAAAGAGCAAG+AGG | - | chr2.4:64628535-64628554 | None:intergenic | 55.0% | |
| GGTGCAGTCAAGTGACTCAG+TGG | + | chr2.4:64628387-64628406 | MS.gene047954:CDS | 55.0% | |
| TCCTAGTGACCGCATAGCAG+AGG | - | chr2.4:64628437-64628456 | None:intergenic | 55.0% | |
| TCTCACAGGTACGATCGGTG+TGG | - | chr2.4:64628207-64628226 | None:intergenic | 55.0% | |
| TCTGCTATGCGGTCACTAGG+AGG | + | chr2.4:64628436-64628455 | MS.gene047954:CDS | 55.0% | |
| TGTGCAGGTCCTTCAAAGGC+TGG | + | chr2.4:64628544-64628563 | MS.gene047954:CDS | 55.0% | |
| TTGGTACGGCCTCCAAAGCA+AGG | - | chr2.4:64628618-64628637 | None:intergenic | 55.0% | |
| ! | AGCAACGATTGAGCACTGCC+TGG | + | chr2.4:64627732-64627751 | MS.gene047954:CDS | 55.0% |
| ! | GGGACGTTTTGCTTTGCGTG+TGG | + | chr2.4:64628172-64628191 | MS.gene047954:intron | 55.0% |
| !! | GGACAGAAGCATCAAGCTCC+AGG | - | chr2.4:64627637-64627656 | None:intergenic | 55.0% |
| GCAGGTCCTTCAAAGGCTGG+TGG | + | chr2.4:64628547-64628566 | MS.gene047954:CDS | 60.0% | |
| !! | CTGATGATGGTCTGCGAGGG+TGG | + | chr2.4:64628245-64628264 | MS.gene047954:CDS | 60.0% |
| AACGGCGGGACCTGAACACC+AGG | + | chr2.4:64628834-64628853 | MS.gene047954:CDS | 65.0% | |
| TCGTGACCCACTCTCCGCCA+CGG | - | chr2.4:64628129-64628148 | None:intergenic | 65.0% | |
| CGTGACCCACTCTCCGCCAC+GGG | - | chr2.4:64628128-64628147 | None:intergenic | 70.0% | |
| TCTCGGCGGGCCTGGTGTTC+AGG | - | chr2.4:64628847-64628866 | None:intergenic | 70.0% | |
| GAGTGGCAGGTGCGCACCCG+TGG | + | chr2.4:64628109-64628128 | MS.gene047954:intron | 75.0% | |
| TGGCAGGTGCGCACCCGTGG+CGG | + | chr2.4:64628112-64628131 | MS.gene047954:intron | 75.0% | |
| ! | GCGCACCCGTGGCGGAGAGT+GGG | + | chr2.4:64628120-64628139 | MS.gene047954:intron | 75.0% |
| ! | TGCGCACCCGTGGCGGAGAG+TGG | + | chr2.4:64628119-64628138 | MS.gene047954:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 64627587 | 64628873 | 64627587 | ID=MS.gene047954 |
| chr2.4 | mRNA | 64627587 | 64628873 | 64627587 | ID=MS.gene047954.t1;Parent=MS.gene047954 |
| chr2.4 | exon | 64627587 | 64627791 | 64627587 | ID=MS.gene047954.t1.exon1;Parent=MS.gene047954.t1 |
| chr2.4 | CDS | 64627587 | 64627791 | 64627587 | ID=cds.MS.gene047954.t1;Parent=MS.gene047954.t1 |
| chr2.4 | exon | 64628242 | 64628873 | 64628242 | ID=MS.gene047954.t1.exon2;Parent=MS.gene047954.t1 |
| chr2.4 | CDS | 64628242 | 64628873 | 64628242 | ID=cds.MS.gene047954.t1;Parent=MS.gene047954.t1 |
| Gene Sequence |
| Protein sequence |