AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56991

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56991.t1 MTR_3g053920 53.757 346 78 4 1 330 1 280 3.70e-110 324
MS.gene56991.t1 MTR_2g061500 72.093 129 20 1 1 113 1 129 2.39e-57 184
MS.gene56991.t1 MTR_4g103530 80.460 87 17 0 47 133 9 95 1.04e-45 156
MS.gene56991.t1 MTR_8g463110 58.678 121 48 1 273 391 1 121 2.44e-30 123
MS.gene56991.t1 MTR_7g011710 64.557 79 28 0 45 123 7 85 5.55e-30 113
MS.gene56991.t1 MTR_6g033215 31.472 197 112 4 5 183 103 294 4.30e-26 107
MS.gene56991.t1 MTR_0010s0370 34.659 176 91 5 8 161 4 177 2.03e-25 102
MS.gene56991.t1 MTR_0010s0350 34.659 176 91 5 8 161 4 177 2.03e-25 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56991.t1 AT2G17920 27.152 151 105 3 53 200 71 219 2.01e-17 82.8
MS.gene56991.t1 AT3G57587 29.730 148 98 3 56 200 75 219 5.31e-16 79.3
MS.gene56991.t1 AT5G36228 25.962 208 129 4 13 210 37 229 8.82e-16 78.6
MS.gene56991.t1 AT2G41590 27.891 147 102 2 56 200 75 219 2.10e-15 77.4
MS.gene56991.t1 AT3G47920 29.730 148 98 3 56 200 4 148 3.59e-15 75.9
MS.gene56991.t1 AT3G31430 28.472 144 95 4 58 199 174 311 1.10e-14 75.1
MS.gene56991.t1 AT2G13450 26.220 164 104 3 38 199 70 218 1.85e-13 71.6

Find 115 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGCTATGAATGGTATTT+TGG 0.144951 5.1:-55497292 None:intergenic
CAGTTTCAGTTTCGGTTTCT+AGG 0.215056 5.1:-55496916 None:intergenic
CCTATACCTTGACCTACTTT+TGG 0.251887 5.1:-55497236 None:intergenic
TCGGACAGTCCGTTGGTTCT+TGG 0.252711 5.1:+55497851 MS.gene56991:CDS
CGTTGAATCACATAGAGTTT+TGG 0.281948 5.1:+55497177 MS.gene56991:CDS
GATTCCAACTCGAACAATTC+AGG 0.287582 5.1:-55497476 None:intergenic
GAAATGGGAACTTTCGTAAT+AGG 0.297255 5.1:+55497998 MS.gene56991:CDS
CCAAAAGTAGGTCAAGGTAT+AGG 0.309973 5.1:+55497236 MS.gene56991:CDS
TGTCACAGGTGTGGAGTTAT+TGG 0.314486 5.1:+55497434 MS.gene56991:CDS
TTGCTGCCCTCCTCCTCTTC+AGG 0.328284 5.1:+55497806 MS.gene56991:CDS
TTTGGGCATCATAAGCCTTA+AGG 0.342578 5.1:-55497274 None:intergenic
CGGATGATGGAGTTCGCAAC+TGG 0.358559 5.1:+55497498 MS.gene56991:CDS
CAAAAGTAGGTCAAGGTATA+GGG 0.367422 5.1:+55497237 MS.gene56991:CDS
TTGGGCATCATAAGCCTTAA+GGG 0.370046 5.1:-55497273 None:intergenic
CTCGACTTCCAATCCTCTTT+CGG 0.370755 5.1:+55497832 MS.gene56991:CDS
GACAGCCGCAGTTTCAGTTT+CGG 0.383038 5.1:-55496924 None:intergenic
TTTACTGCTAATGGTGAAAT+GGG 0.402911 5.1:+55497983 MS.gene56991:CDS
TTTAGCTAACACCGCGTTCT+GGG 0.403474 5.1:-55497747 None:intergenic
TCAGGTGTGTCTCGGCCAGC+AGG 0.427188 5.1:-55497635 None:intergenic
GTAATGGTTGGCACGGCAGC+AGG 0.432575 5.1:-55497593 None:intergenic
GTCTTAGAACACTGTTTGAT+AGG 0.439263 5.1:+55496944 MS.gene56991:CDS
CCATCGAGGTTGAGATTTGT+GGG 0.444470 5.1:-55496860 None:intergenic
ATAGTGATCAGCCACCGATT+TGG 0.445050 5.1:-55497033 None:intergenic
TGATTCAACGAGACAAAGTT+GGG 0.445411 5.1:-55497164 None:intergenic
GGTTGGCACGGCAGCAGGGA+TGG 0.449521 5.1:-55497588 None:intergenic
CAGCGAATTCACTTGGAAAA+GGG 0.452029 5.1:-55497886 None:intergenic
TCAGCGAATTCACTTGGAAA+AGG 0.453589 5.1:-55497887 None:intergenic
ACCATCGAGGTTGAGATTTG+TGG 0.457117 5.1:-55496861 None:intergenic
TGAATTGTTCGAGTTGGAAT+CGG 0.458733 5.1:+55497478 MS.gene56991:CDS
GTTGGCACGGCAGCAGGGAT+GGG 0.462197 5.1:-55497587 None:intergenic
GCTGCCCGCGTCCTTGATGA+AGG 0.476946 5.1:+55497083 MS.gene56991:CDS
TTCGAGTTGGAATCGGATGA+TGG 0.485383 5.1:+55497485 MS.gene56991:CDS
GCATAGCAGTGAGTTGTGTC+TGG 0.485654 5.1:-55497706 None:intergenic
GTGATTCAACGAGACAAAGT+TGG 0.486299 5.1:-55497165 None:intergenic
CGGACTGTCCGAAAGAGGAT+TGG 0.489653 5.1:-55497840 None:intergenic
CTGGGGACCGTATCTTAAAC+CGG 0.490931 5.1:+55497517 MS.gene56991:CDS
ACATCATCAGCGAATTCACT+TGG 0.491870 5.1:-55497893 None:intergenic
ATTGTGCCTGTACCTTCATC+AGG 0.493208 5.1:-55497653 None:intergenic
GAAAGTCACCATCACCAAAT+CGG 0.500791 5.1:+55497019 MS.gene56991:CDS
CGAGGTACCTGAAGAGGAGG+AGG 0.502360 5.1:-55497813 None:intergenic
TTTGGTTGGATAAAGACAAA+AGG 0.503300 5.1:-55497218 None:intergenic
AAACCGGTGTCTCAAAGGAT+TGG 0.512045 5.1:+55497533 MS.gene56991:CDS
GACAAAGTTGGGGACAGCAC+CGG 0.512464 5.1:-55497153 None:intergenic
ACAAAGTTGGGGACAGCACC+GGG 0.518939 5.1:-55497152 None:intergenic
GAAGAAAAGAAAGCGTATGC+TGG 0.523331 5.1:+55497940 MS.gene56991:CDS
AGCCACCTTGATACGCATAT+AGG 0.524133 5.1:-55497312 None:intergenic
TAGGATCAAATGTTAGTCAT+GGG 0.524354 5.1:+55498017 MS.gene56991:CDS
TGAGACACCGGTTTAAGATA+CGG 0.525356 5.1:-55497524 None:intergenic
TCCTCTTTCGGACAGTCCGT+TGG 0.526368 5.1:+55497844 MS.gene56991:CDS
ATTCCAACTCGAACAATTCA+GGG 0.526369 5.1:-55497475 None:intergenic
CAAAAGCACCATTGCTAGCA+CGG 0.526781 5.1:-55497373 None:intergenic
ATCTTAAACCGGTGTCTCAA+AGG 0.527567 5.1:+55497528 MS.gene56991:CDS
CGTATGCTGGCTCTTCAGAA+TGG 0.528478 5.1:+55497953 MS.gene56991:CDS
CTGTTTGATAGGTCGTGTCT+TGG 0.536227 5.1:+55496955 MS.gene56991:CDS
ATGCCCTGAATTGTTCGAGT+TGG 0.537003 5.1:+55497472 MS.gene56991:CDS
ATCTTGTAACCAACGATTGG+TGG 0.539715 5.1:-55497564 None:intergenic
TACCTTCATCAGGTGTGTCT+CGG 0.542413 5.1:-55497643 None:intergenic
TGATAACTTTCACATCGTCA+TGG 0.543889 5.1:+55497118 MS.gene56991:CDS
GCGTCCTTGATGAAGGTCCA+TGG 0.551347 5.1:+55497090 MS.gene56991:CDS
ATAGGATCAAATGTTAGTCA+TGG 0.552771 5.1:+55498016 MS.gene56991:CDS
GGTCTTACTCTGTCCGATGA+AGG 0.555608 5.1:+55496881 MS.gene56991:CDS
TAGCTCCTATATGCGTATCA+AGG 0.556706 5.1:+55497307 MS.gene56991:CDS
GTCATGGATCGTATTTCTCC+CGG 0.557360 5.1:+55497134 MS.gene56991:CDS
GTCTTTATCCAACCAAAAGT+AGG 0.557530 5.1:+55497224 MS.gene56991:CDS
GAACCAATCCTTTGAGACAC+CGG 0.560579 5.1:-55497536 None:intergenic
ATCAGTAGCACCTTGAGTAA+TGG 0.561360 5.1:-55497609 None:intergenic
GTTCTGCTGCCACCAATCGT+TGG 0.564490 5.1:+55497555 MS.gene56991:CDS
TACAAGCTTCAATGACCGTA+TGG 0.568500 5.1:+55497676 MS.gene56991:CDS
ACCAACGGACTGTCCGAAAG+AGG 0.570910 5.1:-55497845 None:intergenic
GGTGCTACTGATGTCCCTGC+TGG 0.571305 5.1:+55497620 MS.gene56991:CDS
GTTTAGAGTGAGACCTTCAT+CGG 0.574943 5.1:-55496894 None:intergenic
ACCTTGAGTAATGGTTGGCA+CGG 0.577836 5.1:-55497600 None:intergenic
AGCGAATTCACTTGGAAAAG+GGG 0.579549 5.1:-55497885 None:intergenic
GGCCGAGACACACCTGATGA+AGG 0.579930 5.1:+55497641 MS.gene56991:CDS
GGGATCTTGTAACCAACGAT+TGG 0.583369 5.1:-55497567 None:intergenic
CGCGGGCAGCATCCACCTTG+TGG 0.587665 5.1:-55497070 None:intergenic
ATGGACCTTCATCAAGGACG+CGG 0.588604 5.1:-55497088 None:intergenic
ATCCAACCAAAAGTAGGTCA+AGG 0.590347 5.1:+55497230 MS.gene56991:CDS
AAAGCCATGGACCTTCATCA+AGG 0.598408 5.1:-55497094 None:intergenic
GTGTCTGGAATGCAGCCATA+CGG 0.600565 5.1:-55497691 None:intergenic
GGATGATGGAGTTCGCAACT+GGG 0.601583 5.1:+55497499 MS.gene56991:CDS
AGTCGAGGTACCTGAAGAGG+AGG 0.601682 5.1:-55497816 None:intergenic
GGAAGTCGAGGTACCTGAAG+AGG 0.602927 5.1:-55497819 None:intergenic
TGGCGTGTCCGTGCTAGCAA+TGG 0.609339 5.1:+55497365 MS.gene56991:CDS
TGGACCTTCATCAAGGACGC+GGG 0.609475 5.1:-55497087 None:intergenic
GCAGACAAACCAAGAACCAA+CGG 0.610720 5.1:-55497860 None:intergenic
TAATGGTTGGCACGGCAGCA+GGG 0.610945 5.1:-55497592 None:intergenic
GACACACCTGATGAAGGTAC+AGG 0.613421 5.1:+55497647 MS.gene56991:CDS
CAGGTGTGTCTCGGCCAGCA+GGG 0.616099 5.1:-55497634 None:intergenic
ACGCATATAGGAGCTATGAA+TGG 0.617014 5.1:-55497300 None:intergenic
CCCACAAATCTCAACCTCGA+TGG 0.618201 5.1:+55496860 MS.gene56991:CDS
ACACCGCGTTCTGGGCAGCA+AGG 0.620275 5.1:-55497739 None:intergenic
TGAAAGTTATCATAAAGCCA+TGG 0.620426 5.1:-55497107 None:intergenic
GCCGTGCCAACCATTACTCA+AGG 0.620464 5.1:+55497599 MS.gene56991:CDS
ATCAGCCACCGATTTGGTGA+TGG 0.623554 5.1:-55497027 None:intergenic
GATGATGTGAATGAGGAGAA+TGG 0.626258 5.1:+55497908 MS.gene56991:CDS
AGGATCAAATGTTAGTCATG+GGG 0.630671 5.1:+55498018 MS.gene56991:CDS
AGAAACCGAAACTGAAACTG+CGG 0.633585 5.1:+55496919 MS.gene56991:CDS
GGATCAAATGTTAGTCATGG+GGG 0.636318 5.1:+55498019 MS.gene56991:CDS
GTAGCACCTTGAGTAATGGT+TGG 0.647314 5.1:-55497605 None:intergenic
GGGCAGCATCCACCTTGTGG+TGG 0.648348 5.1:-55497067 None:intergenic
ATTCGCTGATGATGTGAATG+AGG 0.652502 5.1:+55497901 MS.gene56991:CDS
TGTCCTTGCTGCCCAGAACG+CGG 0.655676 5.1:+55497736 MS.gene56991:CDS
CGAAAGAGGATTGGAAGTCG+AGG 0.655738 5.1:-55497831 None:intergenic
CTTTCAATTCCACCACAAGG+TGG 0.656901 5.1:+55497058 MS.gene56991:CDS
GAGGTACCTGAAGAGGAGGA+GGG 0.660573 5.1:-55497812 None:intergenic
GATCAAATGTTAGTCATGGG+GGG 0.670161 5.1:+55498020 MS.gene56991:CDS
TGTGAATGAGGAGAATGGCT+CGG 0.679209 5.1:+55497913 MS.gene56991:CDS
AGTCACCATCACCAAATCGG+TGG 0.682273 5.1:+55497022 MS.gene56991:CDS
GATGATGGAGTTCGCAACTG+GGG 0.686985 5.1:+55497500 MS.gene56991:CDS
CTCCTATATGCGTATCAAGG+TGG 0.691467 5.1:+55497310 MS.gene56991:CDS
TCTCTTTCAATTCCACCACA+AGG 0.692771 5.1:+55497055 MS.gene56991:CDS
GATTCAACGAGACAAAGTTG+GGG 0.737212 5.1:-55497163 None:intergenic
AGTTATTGGACATACAGACA+AGG 0.744095 5.1:+55497448 MS.gene56991:CDS
CGGACAGAGTAAGACCATCG+AGG 0.782431 5.1:-55496874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTAAATATGAAAAACA+TGG + chr5.1:55497404-55497423 MS.gene56991:CDS 15.0%
ATAGGATCAAATGTTAGTCA+TGG + chr5.1:55498016-55498035 MS.gene56991:CDS 30.0%
GTGTTAGCTAAAAAAGGTAA+CGG + chr5.1:55497758-55497777 MS.gene56991:CDS 30.0%
TAGGATCAAATGTTAGTCAT+GGG + chr5.1:55498017-55498036 MS.gene56991:CDS 30.0%
TGAAAGTTATCATAAAGCCA+TGG - chr5.1:55497110-55497129 None:intergenic 30.0%
TTTACTGCTAATGGTGAAAT+GGG + chr5.1:55497983-55498002 MS.gene56991:CDS 30.0%
TTTGGTTGGATAAAGACAAA+AGG - chr5.1:55497221-55497240 None:intergenic 30.0%
! GTTGAATCACATAGAGTTTT+GGG + chr5.1:55497178-55497197 MS.gene56991:CDS 30.0%
! TTTTACTGCTAATGGTGAAA+TGG + chr5.1:55497982-55498001 MS.gene56991:CDS 30.0%
!!! GGAGAATTTTTTACTGCTAA+TGG + chr5.1:55497974-55497993 MS.gene56991:CDS 30.0%
AGGATCAAATGTTAGTCATG+GGG + chr5.1:55498018-55498037 MS.gene56991:CDS 35.0%
AGTTATTGGACATACAGACA+AGG + chr5.1:55497448-55497467 MS.gene56991:CDS 35.0%
ATTCCAACTCGAACAATTCA+GGG - chr5.1:55497478-55497497 None:intergenic 35.0%
CAAAAGTAGGTCAAGGTATA+GGG + chr5.1:55497237-55497256 MS.gene56991:CDS 35.0%
GAAATGGGAACTTTCGTAAT+AGG + chr5.1:55497998-55498017 MS.gene56991:CDS 35.0%
GTCTTAGAACACTGTTTGAT+AGG + chr5.1:55496944-55496963 MS.gene56991:CDS 35.0%
GTCTTTATCCAACCAAAAGT+AGG + chr5.1:55497224-55497243 MS.gene56991:CDS 35.0%
TGATAACTTTCACATCGTCA+TGG + chr5.1:55497118-55497137 MS.gene56991:CDS 35.0%
TGATTCAACGAGACAAAGTT+GGG - chr5.1:55497167-55497186 None:intergenic 35.0%
TTCTTTATGCTCGCTGAAAT+AGG - chr5.1:55497002-55497021 None:intergenic 35.0%
! AGGAGCTATGAATGGTATTT+TGG - chr5.1:55497295-55497314 None:intergenic 35.0%
! CGTTGAATCACATAGAGTTT+TGG + chr5.1:55497177-55497196 MS.gene56991:CDS 35.0%
! CTGTTCCTTTGAAAAAAGAG+TGG + chr5.1:55497345-55497364 MS.gene56991:CDS 35.0%
! GGAGCTATGAATGGTATTTT+GGG - chr5.1:55497294-55497313 None:intergenic 35.0%
!! TGAATTGTTCGAGTTGGAAT+CGG + chr5.1:55497478-55497497 MS.gene56991:CDS 35.0%
!!! CAAGGTATAGGGAGTTTTTT+AGG + chr5.1:55497248-55497267 MS.gene56991:CDS 35.0%
!!! GAGTTTTTTAGGTACCCTTA+AGG + chr5.1:55497259-55497278 MS.gene56991:CDS 35.0%
ACATCATCAGCGAATTCACT+TGG - chr5.1:55497896-55497915 None:intergenic 40.0%
ACGCATATAGGAGCTATGAA+TGG - chr5.1:55497303-55497322 None:intergenic 40.0%
AGAAACCGAAACTGAAACTG+CGG + chr5.1:55496919-55496938 MS.gene56991:CDS 40.0%
AGCGAATTCACTTGGAAAAG+GGG - chr5.1:55497888-55497907 None:intergenic 40.0%
ATCAGTAGCACCTTGAGTAA+TGG - chr5.1:55497612-55497631 None:intergenic 40.0%
ATCCAACCAAAAGTAGGTCA+AGG + chr5.1:55497230-55497249 MS.gene56991:CDS 40.0%
ATCTTAAACCGGTGTCTCAA+AGG + chr5.1:55497528-55497547 MS.gene56991:CDS 40.0%
ATCTTGTAACCAACGATTGG+TGG - chr5.1:55497567-55497586 None:intergenic 40.0%
CAGCGAATTCACTTGGAAAA+GGG - chr5.1:55497889-55497908 None:intergenic 40.0%
CAGTTTCAGTTTCGGTTTCT+AGG - chr5.1:55496919-55496938 None:intergenic 40.0%
CCAAAAGTAGGTCAAGGTAT+AGG + chr5.1:55497236-55497255 MS.gene56991:CDS 40.0%
GAAAGTCACCATCACCAAAT+CGG + chr5.1:55497019-55497038 MS.gene56991:CDS 40.0%
GATCAAATGTTAGTCATGGG+GGG + chr5.1:55498020-55498039 MS.gene56991:CDS 40.0%
GATGATGTGAATGAGGAGAA+TGG + chr5.1:55497908-55497927 MS.gene56991:CDS 40.0%
GATTCAACGAGACAAAGTTG+GGG - chr5.1:55497166-55497185 None:intergenic 40.0%
GATTCCAACTCGAACAATTC+AGG - chr5.1:55497479-55497498 None:intergenic 40.0%
GGATCAAATGTTAGTCATGG+GGG + chr5.1:55498019-55498038 MS.gene56991:CDS 40.0%
GTGATTCAACGAGACAAAGT+TGG - chr5.1:55497168-55497187 None:intergenic 40.0%
TACAAGCTTCAATGACCGTA+TGG + chr5.1:55497676-55497695 MS.gene56991:CDS 40.0%
TAGCTCCTATATGCGTATCA+AGG + chr5.1:55497307-55497326 MS.gene56991:CDS 40.0%
TCAGCGAATTCACTTGGAAA+AGG - chr5.1:55497890-55497909 None:intergenic 40.0%
TCTCTTTCAATTCCACCACA+AGG + chr5.1:55497055-55497074 MS.gene56991:CDS 40.0%
TTGGGCATCATAAGCCTTAA+GGG - chr5.1:55497276-55497295 None:intergenic 40.0%
TTTGGGCATCATAAGCCTTA+AGG - chr5.1:55497277-55497296 None:intergenic 40.0%
! AACATGGTGTGTTTTGTCAC+AGG + chr5.1:55497420-55497439 MS.gene56991:CDS 40.0%
! AACGCGGTGTTAGCTAAAAA+AGG + chr5.1:55497752-55497771 MS.gene56991:CDS 40.0%
! ATTCGCTGATGATGTGAATG+AGG + chr5.1:55497901-55497920 MS.gene56991:CDS 40.0%
! CCTATACCTTGACCTACTTT+TGG - chr5.1:55497239-55497258 None:intergenic 40.0%
! GAAGAAAAGAAAGCGTATGC+TGG + chr5.1:55497940-55497959 MS.gene56991:CDS 40.0%
! GTTTAGAGTGAGACCTTCAT+CGG - chr5.1:55496897-55496916 None:intergenic 40.0%
!! TACCTTGACCTACTTTTGGT+TGG - chr5.1:55497235-55497254 None:intergenic 40.0%
!! TGAGACACCGGTTTAAGATA+CGG - chr5.1:55497527-55497546 None:intergenic 40.0%
!!! ACACGCCACTCTTTTTTCAA+AGG - chr5.1:55497353-55497372 None:intergenic 40.0%
!!! TCACATAGAGTTTTGGGTTC+AGG + chr5.1:55497184-55497203 MS.gene56991:CDS 40.0%
AAACCGGTGTCTCAAAGGAT+TGG + chr5.1:55497533-55497552 MS.gene56991:CDS 45.0%
AAAGCCATGGACCTTCATCA+AGG - chr5.1:55497097-55497116 None:intergenic 45.0%
ACCATCGAGGTTGAGATTTG+TGG - chr5.1:55496864-55496883 None:intergenic 45.0%
ACCTTGAGTAATGGTTGGCA+CGG - chr5.1:55497603-55497622 None:intergenic 45.0%
AGCCACCTTGATACGCATAT+AGG - chr5.1:55497315-55497334 None:intergenic 45.0%
ATGCCCTGAATTGTTCGAGT+TGG + chr5.1:55497472-55497491 MS.gene56991:CDS 45.0%
ATTGTGCCTGTACCTTCATC+AGG - chr5.1:55497656-55497675 None:intergenic 45.0%
CCATCGAGGTTGAGATTTGT+GGG - chr5.1:55496863-55496882 None:intergenic 45.0%
CTCCTATATGCGTATCAAGG+TGG + chr5.1:55497310-55497329 MS.gene56991:CDS 45.0%
CTCGACTTCCAATCCTCTTT+CGG + chr5.1:55497832-55497851 MS.gene56991:CDS 45.0%
CTGTTTGATAGGTCGTGTCT+TGG + chr5.1:55496955-55496974 MS.gene56991:CDS 45.0%
CTTTCAATTCCACCACAAGG+TGG + chr5.1:55497058-55497077 MS.gene56991:CDS 45.0%
GCAGACAAACCAAGAACCAA+CGG - chr5.1:55497863-55497882 None:intergenic 45.0%
GCTCGCTGAAATAGGCAAAT+TGG - chr5.1:55496994-55497013 None:intergenic 45.0%
GGGATCTTGTAACCAACGAT+TGG - chr5.1:55497570-55497589 None:intergenic 45.0%
GTAGCACCTTGAGTAATGGT+TGG - chr5.1:55497608-55497627 None:intergenic 45.0%
GTCATGGATCGTATTTCTCC+CGG + chr5.1:55497134-55497153 MS.gene56991:CDS 45.0%
TACCTTCATCAGGTGTGTCT+CGG - chr5.1:55497646-55497665 None:intergenic 45.0%
TGTCACAGGTGTGGAGTTAT+TGG + chr5.1:55497434-55497453 MS.gene56991:CDS 45.0%
TGTGAATGAGGAGAATGGCT+CGG + chr5.1:55497913-55497932 MS.gene56991:CDS 45.0%
TTTAGCTAACACCGCGTTCT+GGG - chr5.1:55497750-55497769 None:intergenic 45.0%
! ATAGTGATCAGCCACCGATT+TGG - chr5.1:55497036-55497055 None:intergenic 45.0%
!! CAAAAGCACCATTGCTAGCA+CGG - chr5.1:55497376-55497395 None:intergenic 45.0%
!! GAACCAATCCTTTGAGACAC+CGG - chr5.1:55497539-55497558 None:intergenic 45.0%
!! TTCGAGTTGGAATCGGATGA+TGG + chr5.1:55497485-55497504 MS.gene56991:CDS 45.0%
!! TTTTAGCTAACACCGCGTTC+TGG - chr5.1:55497751-55497770 None:intergenic 45.0%
!!! GAGTTTTGGGTTCAGGTTCA+TGG + chr5.1:55497191-55497210 MS.gene56991:CDS 45.0%
AGTCACCATCACCAAATCGG+TGG + chr5.1:55497022-55497041 MS.gene56991:CDS 50.0%
ATGGACCTTCATCAAGGACG+CGG - chr5.1:55497091-55497110 None:intergenic 50.0%
CCCACAAATCTCAACCTCGA+TGG + chr5.1:55496860-55496879 MS.gene56991:CDS 50.0%
CGAAAGAGGATTGGAAGTCG+AGG - chr5.1:55497834-55497853 None:intergenic 50.0%
CTGGGGACCGTATCTTAAAC+CGG + chr5.1:55497517-55497536 MS.gene56991:CDS 50.0%
GACAGCCGCAGTTTCAGTTT+CGG - chr5.1:55496927-55496946 None:intergenic 50.0%
GCATAGCAGTGAGTTGTGTC+TGG - chr5.1:55497709-55497728 None:intergenic 50.0%
GGTCTTACTCTGTCCGATGA+AGG + chr5.1:55496881-55496900 MS.gene56991:CDS 50.0%
! GACACACCTGATGAAGGTAC+AGG + chr5.1:55497647-55497666 MS.gene56991:CDS 50.0%
! GGTGTGTTTTGTCACAGGTG+TGG + chr5.1:55497425-55497444 MS.gene56991:CDS 50.0%
! GTGTCTGGAATGCAGCCATA+CGG - chr5.1:55497694-55497713 None:intergenic 50.0%
!! ATCAGCCACCGATTTGGTGA+TGG - chr5.1:55497030-55497049 None:intergenic 50.0%
!! CGTATGCTGGCTCTTCAGAA+TGG + chr5.1:55497953-55497972 MS.gene56991:CDS 50.0%
!! GATGATGGAGTTCGCAACTG+GGG + chr5.1:55497500-55497519 MS.gene56991:CDS 50.0%
!! GGATGATGGAGTTCGCAACT+GGG + chr5.1:55497499-55497518 MS.gene56991:CDS 50.0%
ACAAAGTTGGGGACAGCACC+GGG - chr5.1:55497155-55497174 None:intergenic 55.0%
CGGACAGAGTAAGACCATCG+AGG - chr5.1:55496877-55496896 None:intergenic 55.0%
CGGACTGTCCGAAAGAGGAT+TGG - chr5.1:55497843-55497862 None:intergenic 55.0%
GACAAAGTTGGGGACAGCAC+CGG - chr5.1:55497156-55497175 None:intergenic 55.0%
GCCGTGCCAACCATTACTCA+AGG + chr5.1:55497599-55497618 MS.gene56991:CDS 55.0%
GCGTCCTTGATGAAGGTCCA+TGG + chr5.1:55497090-55497109 MS.gene56991:CDS 55.0%
GTTCTGCTGCCACCAATCGT+TGG + chr5.1:55497555-55497574 MS.gene56991:CDS 55.0%
TAATGGTTGGCACGGCAGCA+GGG - chr5.1:55497595-55497614 None:intergenic 55.0%
TCCTCTTTCGGACAGTCCGT+TGG + chr5.1:55497844-55497863 MS.gene56991:CDS 55.0%
TGGACCTTCATCAAGGACGC+GGG - chr5.1:55497090-55497109 None:intergenic 55.0%
! AGTCGAGGTACCTGAAGAGG+AGG - chr5.1:55497819-55497838 None:intergenic 55.0%
! GAGGTACCTGAAGAGGAGGA+GGG - chr5.1:55497815-55497834 None:intergenic 55.0%
! GGAAGTCGAGGTACCTGAAG+AGG - chr5.1:55497822-55497841 None:intergenic 55.0%
!! ACCAACGGACTGTCCGAAAG+AGG - chr5.1:55497848-55497867 None:intergenic 55.0%
!! CGGATGATGGAGTTCGCAAC+TGG + chr5.1:55497498-55497517 MS.gene56991:CDS 55.0%
!! TCGGACAGTCCGTTGGTTCT+TGG + chr5.1:55497851-55497870 MS.gene56991:CDS 55.0%
GGCCGAGACACACCTGATGA+AGG + chr5.1:55497641-55497660 MS.gene56991:CDS 60.0%
GTAATGGTTGGCACGGCAGC+AGG - chr5.1:55497596-55497615 None:intergenic 60.0%
TGGCGTGTCCGTGCTAGCAA+TGG + chr5.1:55497365-55497384 MS.gene56991:CDS 60.0%
TGTCCTTGCTGCCCAGAACG+CGG + chr5.1:55497736-55497755 MS.gene56991:CDS 60.0%
TTGCTGCCCTCCTCCTCTTC+AGG + chr5.1:55497806-55497825 MS.gene56991:CDS 60.0%
! CGAGGTACCTGAAGAGGAGG+AGG - chr5.1:55497816-55497835 None:intergenic 60.0%
!! GGTGCTACTGATGTCCCTGC+TGG + chr5.1:55497620-55497639 MS.gene56991:CDS 60.0%
CAGGTGTGTCTCGGCCAGCA+GGG - chr5.1:55497637-55497656 None:intergenic 65.0%
GCTGCCCGCGTCCTTGATGA+AGG + chr5.1:55497083-55497102 MS.gene56991:CDS 65.0%
GGGCAGCATCCACCTTGTGG+TGG - chr5.1:55497070-55497089 None:intergenic 65.0%
GTTGGCACGGCAGCAGGGAT+GGG - chr5.1:55497590-55497609 None:intergenic 65.0%
TCAGGTGTGTCTCGGCCAGC+AGG - chr5.1:55497638-55497657 None:intergenic 65.0%
! ACACCGCGTTCTGGGCAGCA+AGG - chr5.1:55497742-55497761 None:intergenic 65.0%
CGCGGGCAGCATCCACCTTG+TGG - chr5.1:55497073-55497092 None:intergenic 70.0%
GGTTGGCACGGCAGCAGGGA+TGG - chr5.1:55497591-55497610 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 55496854 55498054 55496854 ID=MS.gene56991
chr5.1 mRNA 55496854 55498054 55496854 ID=MS.gene56991.t1;Parent=MS.gene56991
chr5.1 exon 55496854 55496983 55496854 ID=MS.gene56991.t1.exon1;Parent=MS.gene56991.t1
chr5.1 CDS 55496854 55496983 55496854 ID=cds.MS.gene56991.t1;Parent=MS.gene56991.t1
chr5.1 exon 55497009 55498054 55497009 ID=MS.gene56991.t1.exon2;Parent=MS.gene56991.t1
chr5.1 CDS 55497009 55498054 55497009 ID=cds.MS.gene56991.t1;Parent=MS.gene56991.t1
Gene Sequence

>MS.gene56991

ATGGATCCCACAAATCTCAACCTCGATGGTCTTACTCTGTCCGATGAAGGTCTCACTCTAAACCTAGAAACCGAAACTGAAACTGCGGCTGTCTTAGAACACTGTTTGATAGGTCGTGTCTTGGCTGATCGTGAAATCCAATTTGCCTATTTCAGCGAGCATAAAGAAAGTCACCATCACCAAATCGGTGGCTGATCACTATCTCTTTCAATTCCACCACAAGGTGGATGCTGCCCGCGTCCTTGATGAAGGTCCATGGCTTTATGATAACTTTCACATCGTCATGGATCGTATTTCTCCCGGTGCTGTCCCCAACTTTGTCTCGTTGAATCACATAGAGTTTTGGGTTCAGGTTCATGGTTTACCTTTTGTCTTTATCCAACCAAAAGTAGGTCAAGGTATAGGGAGTTTTTTAGGTACCCTTAAGGCTTATGATGCCCAAAATACCATTCATAGCTCCTATATGCGTATCAAGGTGGCTATAGATGTCACTGTTCCTTTGAAAAAAGAGTGGCGTGTCCGTGCTAGCAATGGTGCTTTTGTTACTGTTGATTTTAAATATGAAAAACATGGTGTGTTTTGTCACAGGTGTGGAGTTATTGGACATACAGACAAGGTATGCCCTGAATTGTTCGAGTTGGAATCGGATGATGGAGTTCGCAACTGGGGACCGTATCTTAAACCGGTGTCTCAAAGGATTGGTTCTGCTGCCACCAATCGTTGGTTACAAGATCCCATCCCTGCTGCCGTGCCAACCATTACTCAAGGTGCTACTGATGTCCCTGCTGGCCGAGACACACCTGATGAAGGTACAGGCACAATTACAAGCTTCAATGACCGTATGGCTGCATTCCAGACACAACTCACTGCTATGCGACATGATGTCCTTGCTGCCCAGAACGCGGTGTTAGCTAAAAAAGGTAACGGTGTCAATTCTGCTTGCAAAGTGCACTTGCTGCCCTCCTCCTCTTCAGGTACCTCGACTTCCAATCCTCTTTCGGACAGTCCGTTGGTTCTTGGTTTGTCTGCTGCCCCTTTTCCAAGTGAATTCGCTGATGATGTGAATGAGGAGAATGGCTCGGAGCTGAAGAAAAGAAAGCGTATGCTGGCTCTTCAGAATGGAGAATTTTTTACTGCTAATGGTGAAATGGGAACTTTCGTAATAGGATCAAATGTTAGTCATGGGGGGATGTTGAAATGA
Protein sequence

>MS.gene56991.t1

MDPTNLNLDGLTLSDEGLTLNLETETETAAVLEHCLIGRVLADPSIKKVTITKSVADHYLFQFHHKVDAARVLDEGPWLYDNFHIVMDRISPGAVPNFVSLNHIEFWVQVHGLPFVFIQPKVGQGIGSFLGTLKAYDAQNTIHSSYMRIKVAIDVTVPLKKEWRVRASNGAFVTVDFKYEKHGVFCHRCGVIGHTDKVCPELFELESDDGVRNWGPYLKPVSQRIGSAATNRWLQDPIPAAVPTITQGATDVPAGRDTPDEGTGTITSFNDRMAAFQTQLTAMRHDVLAAQNAVLAKKGNGVNSACKVHLLPSSSSGTSTSNPLSDSPLVLGLSAAPFPSEFADDVNEENGSELKKRKRMLALQNGEFFTANGEMGTFVIGSNVSHGGMLK