AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058889

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058889.t1 MTR_0010s0370 47.727 132 67 1 89 220 4 133 1.35e-35 129
MS.gene058889.t1 MTR_0010s0350 47.727 132 67 1 89 220 4 133 1.35e-35 129
MS.gene058889.t1 MTR_1g036720 44.545 110 59 1 89 198 4 111 1.05e-27 105
MS.gene058889.t1 MTR_3g053920 30.693 202 123 6 90 280 4 199 1.60e-21 93.6
MS.gene058889.t1 MTR_2g061500 36.000 125 75 2 91 212 5 127 1.86e-21 89.7
MS.gene058889.t1 MTR_4g103530 42.466 73 42 0 145 217 6 78 7.93e-14 69.7
MS.gene058889.t1 MTR_6g033215 24.675 154 112 1 67 220 79 228 2.85e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 101 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGAGTTATTAATTACTAT+TGG 0.248802 6.2:-39647605 None:intergenic
TGATTGAGAGGAACATATTT+TGG 0.253635 6.2:-39647101 None:intergenic
CTCTCAATCATATACCCTTC+TGG 0.292054 6.2:+39647114 MS.gene058889:CDS
ATGGAGCACCTTTCCATTGC+AGG 0.293915 6.2:+39646777 MS.gene058889:CDS
ACATATGAATGTTGTTTACT+AGG 0.312897 6.2:-39647581 None:intergenic
TGTTTGTCAGATGTCTATTA+AGG 0.315865 6.2:+39646950 MS.gene058889:CDS
CGCTCAAGGAGTACTGATTC+TGG 0.328449 6.2:+39647764 MS.gene058889:CDS
GAAAGAAGGAAAGGAGATAA+AGG 0.328807 6.2:-39646664 None:intergenic
AGAAATGGTAGTGGAAGTTC+TGG 0.341712 6.2:+39647488 MS.gene058889:CDS
AGAAGGGTGAAAGTCGTAAC+AGG 0.359479 6.2:-39646692 None:intergenic
GCTGCCGCTGAGAGCCTTGA+AGG 0.384129 6.2:+39646840 MS.gene058889:CDS
CTGATGATGGCACACGCCTT+TGG 0.408898 6.2:+39647438 MS.gene058889:CDS
TTAATAGACATCTGACAAAC+AGG 0.416021 6.2:-39646948 None:intergenic
GAGAGGATGGTGGTCCGGTT+AGG 0.417943 6.2:+39647525 MS.gene058889:CDS
TTGATGGAAGAAGAATTAAA+TGG 0.421284 6.2:+39647728 MS.gene058889:CDS
CAATTGTTTACCTGCAGTAA+TGG 0.424201 6.2:-39647171 None:intergenic
TCCACTACCATTTCTCTTCA+CGG 0.427375 6.2:-39647480 None:intergenic
TCTCGGGGTCCAGCTTTAGA+AGG 0.429910 6.2:-39648614 None:intergenic
CCACTACCATTTCTCTTCAC+GGG 0.431490 6.2:-39647479 None:intergenic
TGTCACGAGGGTGAAAGAAC+TGG 0.445172 6.2:-39646998 None:intergenic
TTCATCCTCTTCACCTGCAA+TGG 0.458106 6.2:-39646790 None:intergenic
TGTAAACGAGACTGAATTGA+TGG 0.463122 6.2:+39647712 MS.gene058889:CDS
CTCGTAGGGTTATCGCATCC+TGG 0.466560 6.2:+39646606 MS.gene058889:CDS
GACGGCCATCTTCTGGTACT+AGG 0.470820 6.2:+39647056 MS.gene058889:CDS
GAGGGTGAAAGAACTGGAAT+AGG 0.478785 6.2:-39646992 None:intergenic
GAAGGTTCCTATGTTCTAGT+TGG 0.479471 6.2:+39646858 MS.gene058889:CDS
CATATGAATGTTGTTTACTA+GGG 0.484050 6.2:-39647580 None:intergenic
CACCGTTCATAATCCTCTCA+TGG 0.498357 6.2:+39646758 MS.gene058889:CDS
CAGGGAAAGGAAAGAAGGAA+AGG 0.498951 6.2:-39646673 None:intergenic
AATTCAGTCTCGTTTACATC+CGG 0.500067 6.2:-39647707 None:intergenic
CTAGAACATAGGAACCTTCA+AGG 0.504807 6.2:-39646854 None:intergenic
CCAATAGTAATTAATAACTC+GGG 0.506814 6.2:+39647605 MS.gene058889:CDS
GTTCTTTCACCCTCGTGACA+TGG 0.508138 6.2:+39647001 MS.gene058889:CDS
GGCTGTATGTCCATTACTGC+AGG 0.508562 6.2:+39647161 MS.gene058889:CDS
AAAACGTCCAACTAGAACAT+AGG 0.509009 6.2:-39646865 None:intergenic
GATGGCGCAACAATCCTAAC+CGG 0.513324 6.2:-39647539 None:intergenic
TACAGCCGCTCGGGACATCA+TGG 0.514759 6.2:-39647145 None:intergenic
GCTGCGAGAGGATGGTGGTC+CGG 0.517224 6.2:+39647520 MS.gene058889:CDS
TCCAATAGTAATTAATAACT+CGG 0.517652 6.2:+39647604 MS.gene058889:CDS
CGGAGAGAAATCTTCTCACC+AGG 0.520564 6.2:-39646624 None:intergenic
ACATGTCCTGCTTTCTGTGA+TGG 0.521547 6.2:-39647557 None:intergenic
CGTAACAGGGAAAGGAAAGA+AGG 0.522611 6.2:-39646678 None:intergenic
CACTACCATTTCTCTTCACG+GGG 0.523078 6.2:-39647478 None:intergenic
ATCCGGAGTTAAATTTGACT+TGG 0.524266 6.2:-39647690 None:intergenic
TATGCCAATGCTACTGATGA+TGG 0.526255 6.2:+39647425 MS.gene058889:CDS
CCTTTCCATTGCAGGTGAAG+AGG 0.530028 6.2:+39646785 MS.gene058889:CDS
GACGCATATCTCCATGGCTG+TGG 0.531084 6.2:+39647628 MS.gene058889:CDS
TAATGGACATACAGCCGCTC+GGG 0.538615 6.2:-39647154 None:intergenic
GAAAGAACTGGAATAGGTAC+AGG 0.541774 6.2:-39646986 None:intergenic
TTGACTTGGTTGTCGAGGGA+GGG 0.543322 6.2:-39647676 None:intergenic
AAATTTGACTTGGTTGTCGA+GGG 0.545829 6.2:-39647680 None:intergenic
CTCGGGGACGCATATCTCCA+TGG 0.552135 6.2:+39647622 MS.gene058889:CDS
GGGTCCAGCTTTAGAAGGAT+AGG 0.552602 6.2:-39648609 None:intergenic
TATTCGAATCTATGCGATGA+AGG 0.553708 6.2:+39646902 MS.gene058889:CDS
TAAATTTGACTTGGTTGTCG+AGG 0.558241 6.2:-39647681 None:intergenic
GAGGGAGGGAATAAAGTAGC+AGG 0.561743 6.2:-39647662 None:intergenic
GGTGAGAGTCGTAACAGAGA+AGG 0.566690 6.2:-39646709 None:intergenic
TCATCGCATAGATTCGAATA+CGG 0.566745 6.2:-39646899 None:intergenic
ATCATGGACTTGCAACCAGA+AGG 0.569010 6.2:-39647129 None:intergenic
TTTGACTTGGTTGTCGAGGG+AGG 0.572535 6.2:-39647677 None:intergenic
CCTCTTCACCTGCAATGGAA+AGG 0.574754 6.2:-39646785 None:intergenic
AAAGTGAGGTGTAACAGAGA+AGG 0.577068 6.2:-39646731 None:intergenic
TGTGCCATCATCAGTAGCAT+TGG 0.578475 6.2:-39647429 None:intergenic
ATTTATGAATGCCACAGCCA+TGG 0.578616 6.2:-39647639 None:intergenic
TTGTCAGATGTCTATTAAGG+AGG 0.578781 6.2:+39646953 MS.gene058889:CDS
GTGAGAGTCGTAACAGAGAA+GGG 0.581565 6.2:-39646708 None:intergenic
GTGAAAGTCGTAACAGGGAA+AGG 0.581594 6.2:-39646686 None:intergenic
TGCGATGAAGGAGAAGATGC+CGG 0.583018 6.2:+39646914 MS.gene058889:CDS
AAATTCCTAGTACCAGAAGA+TGG 0.585362 6.2:-39647061 None:intergenic
ATGGAGCGAGTACTCAAGAA+AGG 0.596060 6.2:+39647020 MS.gene058889:CDS
AGGATCTTCTCACGGCGGCA+CGG 0.596223 6.2:-39646644 None:intergenic
GTTGCGCCATCACAGAAAGC+AGG 0.597706 6.2:+39647551 MS.gene058889:CDS
CCCGTGAAGAGAAATGGTAG+TGG 0.597914 6.2:+39647479 MS.gene058889:CDS
AAGTGAGGTGTAACAGAGAA+GGG 0.598372 6.2:-39646730 None:intergenic
CAGAAGGGTATATGATTGAG+AGG 0.604011 6.2:-39647113 None:intergenic
TCAAAGTGGCTGCGAGAGGA+TGG 0.606599 6.2:+39647512 MS.gene058889:CDS
AGTACTCGCTCCATGTCACG+AGG 0.611590 6.2:-39647011 None:intergenic
TGATTCTGGAACTGCACCAA+AGG 0.614269 6.2:+39647778 MS.gene058889:CDS
CACATAGCTCAGAACTCCAA+AGG 0.614435 6.2:-39647454 None:intergenic
TCATGGACTTGCAACCAGAA+GGG 0.615325 6.2:-39647128 None:intergenic
ATGGAAAGGTGCTCCATGAG+AGG 0.619220 6.2:-39646771 None:intergenic
CAAACAGGTTTCATGAACTC+CGG 0.621481 6.2:-39646933 None:intergenic
AACCAAGTCAAATTTAACTC+CGG 0.622858 6.2:+39647688 MS.gene058889:CDS
GTAATGGACATACAGCCGCT+CGG 0.630761 6.2:-39647155 None:intergenic
GGAGATAAAGGATCTTCTCA+CGG 0.642322 6.2:-39646652 None:intergenic
AAGTGGCTGCGAGAGGATGG+TGG 0.642997 6.2:+39647515 MS.gene058889:CDS
TGGATCAAAGTGGCTGCGAG+AGG 0.643439 6.2:+39647508 MS.gene058889:CDS
CAATAGTAATTAATAACTCG+GGG 0.647755 6.2:+39647606 MS.gene058889:CDS
CTCCATGAGAGGATTATGAA+CGG 0.649136 6.2:-39646760 None:intergenic
ATAGATTCGAATACGGCGGT+CGG 0.654296 6.2:-39646892 None:intergenic
GAGTACTCAAGAAAGGTCCA+TGG 0.655584 6.2:+39647027 MS.gene058889:CDS
GATAGGTGAATGATCTGAAG+TGG 0.662753 6.2:-39648592 None:intergenic
GTGGAAGTTCTGGATCAAAG+TGG 0.693437 6.2:+39647498 MS.gene058889:CDS
ATGAACGGTGAGCAAAAGTG+AGG 0.696367 6.2:-39646745 None:intergenic
GAAGGGTGAAAGTCGTAACA+GGG 0.697958 6.2:-39646691 None:intergenic
CAAGTCCATGATGTCCCGAG+CGG 0.706719 6.2:+39647140 MS.gene058889:CDS
GGAACCTTCAAGGCTCTCAG+CGG 0.722207 6.2:-39646844 None:intergenic
TCGCATAGATTCGAATACGG+CGG 0.732883 6.2:-39646896 None:intergenic
ACTACCATTTCTCTTCACGG+GGG 0.754436 6.2:-39647477 None:intergenic
GTACTCGCTCCATGTCACGA+GGG 0.761679 6.2:-39647010 None:intergenic
GATAAAGGATCTTCTCACGG+CGG 0.767449 6.2:-39646649 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATTTATAATATTACAT+TGG - chr6.2:39648164-39648183 None:intergenic 10.0%
!!! TAGTCTTAATCTTTTTAAAT+CGG - chr6.2:39647304-39647323 None:intergenic 15.0%
!! AGATTAATTAATCTTGCATT+CGG - chr6.2:39648564-39648583 None:intergenic 20.0%
!! TATAATATTACATTGGATAG+AGG - chr6.2:39648157-39648176 None:intergenic 20.0%
!! TCAATATGGAAAAAAATATC+CGG - chr6.2:39648021-39648040 None:intergenic 20.0%
!! TCCAATAGTAATTAATAACT+CGG + chr6.2:39647604-39647623 MS.gene058889:CDS 20.0%
!!! ATCTTTTTAAATCGGATAAA+TGG - chr6.2:39647296-39647315 None:intergenic 20.0%
! AAAAAGATTAAGACTAAGAC+TGG + chr6.2:39647308-39647327 MS.gene058889:intron 25.0%
! AACTTGCAAGTTAATGAAAT+TGG - chr6.2:39648190-39648209 None:intergenic 25.0%
! ATTATGTAGAAAAACGATTC+TGG - chr6.2:39646576-39646595 None:intergenic 25.0%
! CAATAGTAATTAATAACTCG+GGG + chr6.2:39647606-39647625 MS.gene058889:CDS 25.0%
! CATATAAGAAGCAAGAAAAT+TGG - chr6.2:39647243-39647262 None:intergenic 25.0%
! CCAATAGTAATTAATAACTC+GGG + chr6.2:39647605-39647624 MS.gene058889:CDS 25.0%
! GATTAATTAATCTTGCATTC+GGG - chr6.2:39648563-39648582 None:intergenic 25.0%
! TTGATGGAAGAAGAATTAAA+TGG + chr6.2:39647728-39647747 MS.gene058889:CDS 25.0%
!! ACATATGAATGTTGTTTACT+AGG - chr6.2:39647584-39647603 None:intergenic 25.0%
!! ACGAAATGAGTATTTTATGT+TGG + chr6.2:39647929-39647948 MS.gene058889:intron 25.0%
!! CATATGAATGTTGTTTACTA+GGG - chr6.2:39647583-39647602 None:intergenic 25.0%
!!! AGAGAAGTTTTTTATTTGCT+TGG + chr6.2:39648066-39648085 MS.gene058889:intron 25.0%
AAACAATTGGGTAATTTCGT+TGG + chr6.2:39647185-39647204 MS.gene058889:intron 30.0%
AAATCACCTATAATACACCA+AGG - chr6.2:39648327-39648346 None:intergenic 30.0%
AACCAAGTCAAATTTAACTC+CGG + chr6.2:39647688-39647707 MS.gene058889:CDS 30.0%
AATCACCTATAATACACCAA+GGG - chr6.2:39648326-39648345 None:intergenic 30.0%
AGTGAGACAAAGTTTCAATA+TGG - chr6.2:39648035-39648054 None:intergenic 30.0%
ATTACTGCAGGTAAACAATT+GGG + chr6.2:39647173-39647192 MS.gene058889:intron 30.0%
CAACCCACAAAAATAACAAA+AGG - chr6.2:39647372-39647391 None:intergenic 30.0%
CATAAAATACTCATTTCGTC+CGG - chr6.2:39647928-39647947 None:intergenic 30.0%
CCCGAGTTATTAATTACTAT+TGG - chr6.2:39647608-39647627 None:intergenic 30.0%
TAAAAGGATATCCTTCTAGA+GGG - chr6.2:39648455-39648474 None:intergenic 30.0%
TAATTTCGTTGGCGAATATA+TGG + chr6.2:39647196-39647215 MS.gene058889:intron 30.0%
TACAATCATTTACTGCAGAA+CGG - chr6.2:39648419-39648438 None:intergenic 30.0%
TGTTTGTCAGATGTCTATTA+AGG + chr6.2:39646950-39646969 MS.gene058889:CDS 30.0%
TTAATAGACATCTGACAAAC+AGG - chr6.2:39646951-39646970 None:intergenic 30.0%
TTCAGATTTGTATCTACCTT+TGG - chr6.2:39647797-39647816 None:intergenic 30.0%
! TACTTTACTGTTGATAGAGA+AGG + chr6.2:39648099-39648118 MS.gene058889:intron 30.0%
! TGATTGAGAGGAACATATTT+TGG - chr6.2:39647104-39647123 None:intergenic 30.0%
!!! ATAATCGTTTTTTCTCTCGT+AGG + chr6.2:39646591-39646610 MS.gene058889:CDS 30.0%
!!! GGTCCTTTTGTTATTTTTGT+GGG + chr6.2:39647366-39647385 MS.gene058889:intron 30.0%
!!! TAATCGTTTTTTCTCTCGTA+GGG + chr6.2:39646592-39646611 MS.gene058889:CDS 30.0%
AAAACGTCCAACTAGAACAT+AGG - chr6.2:39646868-39646887 None:intergenic 35.0%
AAATTCCTAGTACCAGAAGA+TGG - chr6.2:39647064-39647083 None:intergenic 35.0%
AATTCAGTCTCGTTTACATC+CGG - chr6.2:39647710-39647729 None:intergenic 35.0%
ATCCGGAGTTAAATTTGACT+TGG - chr6.2:39647693-39647712 None:intergenic 35.0%
CAATTGTTTACCTGCAGTAA+TGG - chr6.2:39647174-39647193 None:intergenic 35.0%
CATTACTGCAGGTAAACAAT+TGG + chr6.2:39647172-39647191 MS.gene058889:intron 35.0%
CCTTATCTGTGTCTATAAAC+CGG + chr6.2:39647999-39648018 MS.gene058889:intron 35.0%
CGTTTCAAATATGAGAGACT+CGG + chr6.2:39647344-39647363 MS.gene058889:intron 35.0%
GAAAGAAGGAAAGGAGATAA+AGG - chr6.2:39646667-39646686 None:intergenic 35.0%
GTAAAAGGATATCCTTCTAG+AGG - chr6.2:39648456-39648475 None:intergenic 35.0%
GTTTCAAATATGAGAGACTC+GGG + chr6.2:39647345-39647364 MS.gene058889:intron 35.0%
TATTCGAATCTATGCGATGA+AGG + chr6.2:39646902-39646921 MS.gene058889:CDS 35.0%
TCATCGCATAGATTCGAATA+CGG - chr6.2:39646902-39646921 None:intergenic 35.0%
TGTAAACGAGACTGAATTGA+TGG + chr6.2:39647712-39647731 MS.gene058889:CDS 35.0%
TTGTCAGATGTCTATTAAGG+AGG + chr6.2:39646953-39646972 MS.gene058889:CDS 35.0%
TTTACCTGGTTCAAAAGTCT+TGG + chr6.2:39648471-39648490 MS.gene058889:intron 35.0%
TTTAGACTAGGAACTACCTT+AGG - chr6.2:39647976-39647995 None:intergenic 35.0%
! AGACTTTTGAACCAGGTAAA+AGG - chr6.2:39648471-39648490 None:intergenic 35.0%
! ATGGCGACTAACTTCTTTTT+GGG + chr6.2:39648230-39648249 MS.gene058889:intron 35.0%
! CAGATAAGGTCTTTTAGACT+AGG - chr6.2:39647988-39648007 None:intergenic 35.0%
! TAGAAGGATATCCTTTTACC+TGG + chr6.2:39648457-39648476 MS.gene058889:intron 35.0%
! TATGGCGACTAACTTCTTTT+TGG + chr6.2:39648229-39648248 MS.gene058889:intron 35.0%
!! AAATTTGACTTGGTTGTCGA+GGG - chr6.2:39647683-39647702 None:intergenic 35.0%
!! TAAATTTGACTTGGTTGTCG+AGG - chr6.2:39647684-39647703 None:intergenic 35.0%
!! TGATCCATTGTAGTTTGTTG+TGG - chr6.2:39647866-39647885 None:intergenic 35.0%
!!! CATTTTTTATCGACAGAGTC+TGG + chr6.2:39647890-39647909 MS.gene058889:intron 35.0%
!!! GGGTCCTTTTGTTATTTTTG+TGG + chr6.2:39647365-39647384 MS.gene058889:intron 35.0%
!!! TGTTATTTTTGTGGGTTGCT+TGG + chr6.2:39647374-39647393 MS.gene058889:intron 35.0%
AAAGTGAGGTGTAACAGAGA+AGG - chr6.2:39646734-39646753 None:intergenic 40.0%
AAGCCATTATAAAGCCAAGC+CGG - chr6.2:39648396-39648415 None:intergenic 40.0%
AAGTGAGGTGTAACAGAGAA+GGG - chr6.2:39646733-39646752 None:intergenic 40.0%
ACGCTGCACATCTTTCATAA+TGG - chr6.2:39647837-39647856 None:intergenic 40.0%
ATTTATGAATGCCACAGCCA+TGG - chr6.2:39647642-39647661 None:intergenic 40.0%
CAAACAGGTTTCATGAACTC+CGG - chr6.2:39646936-39646955 None:intergenic 40.0%
CCGGTTTATAGACACAGATA+AGG - chr6.2:39648002-39648021 None:intergenic 40.0%
CTAGAACATAGGAACCTTCA+AGG - chr6.2:39646857-39646876 None:intergenic 40.0%
CTCCATGAGAGGATTATGAA+CGG - chr6.2:39646763-39646782 None:intergenic 40.0%
CTCTCAATCATATACCCTTC+TGG + chr6.2:39647114-39647133 MS.gene058889:CDS 40.0%
GAAAGAACTGGAATAGGTAC+AGG - chr6.2:39646989-39647008 None:intergenic 40.0%
GAAGGTTCCTATGTTCTAGT+TGG + chr6.2:39646858-39646877 MS.gene058889:CDS 40.0%
GATAGGTGAATGATCTGAAG+TGG - chr6.2:39648595-39648614 None:intergenic 40.0%
GGAGATAAAGGATCTTCTCA+CGG - chr6.2:39646655-39646674 None:intergenic 40.0%
GGTTCCACAACAAACTACAA+TGG + chr6.2:39647859-39647878 MS.gene058889:intron 40.0%
TATAATACACCAAGGGTTCG+TGG - chr6.2:39648319-39648338 None:intergenic 40.0%
TATGAAAGATGTGCAGCGTA+CGG + chr6.2:39647838-39647857 MS.gene058889:intron 40.0%
TATGCCAATGCTACTGATGA+TGG + chr6.2:39647425-39647444 MS.gene058889:CDS 40.0%
TATGCGTATTCGTGTTATGC+TGG + chr6.2:39647259-39647278 MS.gene058889:intron 40.0%
TCCACTACCATTTCTCTTCA+CGG - chr6.2:39647483-39647502 None:intergenic 40.0%
TTACCAGTGATGACAAACGA+GGG + chr6.2:39648358-39648377 MS.gene058889:intron 40.0%
! ACGAACCCTTGGTGTATTAT+AGG + chr6.2:39648318-39648337 MS.gene058889:intron 40.0%
! AGTTCCAAGACTTTTGAACC+AGG - chr6.2:39648478-39648497 None:intergenic 40.0%
! ATTTTATGTTGGAACTGCCG+AGG + chr6.2:39647940-39647959 MS.gene058889:intron 40.0%
! CAGAAGGGTATATGATTGAG+AGG - chr6.2:39647116-39647135 None:intergenic 40.0%
! GTACTAGGAATTTTGCAGCA+AGG + chr6.2:39647071-39647090 MS.gene058889:CDS 40.0%
! TGGCGACTAACTTCTTTTTG+GGG + chr6.2:39648231-39648250 MS.gene058889:intron 40.0%
!! AAAGGTCCATGGTTTTTCGA+CGG + chr6.2:39647038-39647057 MS.gene058889:CDS 40.0%
!! AGAAATGGTAGTGGAAGTTC+TGG + chr6.2:39647488-39647507 MS.gene058889:CDS 40.0%
!! GTACTGTTAAAAAGCGCTCA+AGG + chr6.2:39647750-39647769 MS.gene058889:CDS 40.0%
!! GTGGTTGTCTTGCTGTTATT+TGG + chr6.2:39648127-39648146 MS.gene058889:intron 40.0%
AAATACTCATTTCGTCCGGC+AGG - chr6.2:39647924-39647943 None:intergenic 45.0%
AAGTCTTGGAACTCCTCTTG+CGG + chr6.2:39648485-39648504 MS.gene058889:intron 45.0%
ACATGTCCTGCTTTCTGTGA+TGG - chr6.2:39647560-39647579 None:intergenic 45.0%
ACTACCATTTCTCTTCACGG+GGG - chr6.2:39647480-39647499 None:intergenic 45.0%
AGAAGGGTGAAAGTCGTAAC+AGG - chr6.2:39646695-39646714 None:intergenic 45.0%
AGTCTTTCTTCAACCGCAAG+AGG - chr6.2:39648501-39648520 None:intergenic 45.0%
ATAGATTCGAATACGGCGGT+CGG - chr6.2:39646895-39646914 None:intergenic 45.0%
ATCATGGACTTGCAACCAGA+AGG - chr6.2:39647132-39647151 None:intergenic 45.0%
ATGAACGGTGAGCAAAAGTG+AGG - chr6.2:39646748-39646767 None:intergenic 45.0%
ATGCACAACGTCGACAATCT+TGG + chr6.2:39648265-39648284 MS.gene058889:intron 45.0%
ATGGAGCGAGTACTCAAGAA+AGG + chr6.2:39647020-39647039 MS.gene058889:CDS 45.0%
CAAGTTAATGACCCAGACAG+AGG + chr6.2:39648204-39648223 MS.gene058889:intron 45.0%
CACATAGCTCAGAACTCCAA+AGG - chr6.2:39647457-39647476 None:intergenic 45.0%
CACCGTTCATAATCCTCTCA+TGG + chr6.2:39646758-39646777 MS.gene058889:CDS 45.0%
CACTACCATTTCTCTTCACG+GGG - chr6.2:39647481-39647500 None:intergenic 45.0%
CAGGGAAAGGAAAGAAGGAA+AGG - chr6.2:39646676-39646695 None:intergenic 45.0%
CCACTACCATTTCTCTTCAC+GGG - chr6.2:39647482-39647501 None:intergenic 45.0%
CGTAACAGGGAAAGGAAAGA+AGG - chr6.2:39646681-39646700 None:intergenic 45.0%
CTTACCAGTGATGACAAACG+AGG + chr6.2:39648357-39648376 MS.gene058889:intron 45.0%
GAAGGGTGAAAGTCGTAACA+GGG - chr6.2:39646694-39646713 None:intergenic 45.0%
GAGGGTGAAAGAACTGGAAT+AGG - chr6.2:39646995-39647014 None:intergenic 45.0%
GAGTACTCAAGAAAGGTCCA+TGG + chr6.2:39647027-39647046 MS.gene058889:CDS 45.0%
GATAAAGGATCTTCTCACGG+CGG - chr6.2:39646652-39646671 None:intergenic 45.0%
GTGAAAGTCGTAACAGGGAA+AGG - chr6.2:39646689-39646708 None:intergenic 45.0%
GTGAGAGTCGTAACAGAGAA+GGG - chr6.2:39646711-39646730 None:intergenic 45.0%
TACCAGTGATGACAAACGAG+GGG + chr6.2:39648359-39648378 MS.gene058889:intron 45.0%
TCATGGACTTGCAACCAGAA+GGG - chr6.2:39647131-39647150 None:intergenic 45.0%
TCGCATAGATTCGAATACGG+CGG - chr6.2:39646899-39646918 None:intergenic 45.0%
TGCTGCAGAATTCATCTGTG+TGG - chr6.2:39647400-39647419 None:intergenic 45.0%
TGGACATAGCAGTAAGGTCA+CGG - chr6.2:39648299-39648318 None:intergenic 45.0%
TGTGCCATCATCAGTAGCAT+TGG - chr6.2:39647432-39647451 None:intergenic 45.0%
TTACATGACCTCCCTCTAGA+AGG + chr6.2:39648441-39648460 MS.gene058889:intron 45.0%
TTCATCCTCTTCACCTGCAA+TGG - chr6.2:39646793-39646812 None:intergenic 45.0%
! AAGGATATCCTTCTAGAGGG+AGG - chr6.2:39648452-39648471 None:intergenic 45.0%
! GTTGATAGAGAAGGACGTAG+TGG + chr6.2:39648108-39648127 MS.gene058889:intron 45.0%
!! AGACCGGCTTGGCTTTATAA+TGG + chr6.2:39648390-39648409 MS.gene058889:intron 45.0%
!! GTGGAAGTTCTGGATCAAAG+TGG + chr6.2:39647498-39647517 MS.gene058889:CDS 45.0%
!! TGATTCTGGAACTGCACCAA+AGG + chr6.2:39647778-39647797 MS.gene058889:CDS 45.0%
ACATAGCAGTAAGGTCACGG+AGG - chr6.2:39648296-39648315 None:intergenic 50.0%
ACCAGTGATGACAAACGAGG+GGG + chr6.2:39648360-39648379 MS.gene058889:intron 50.0%
AGATGGCCGTCGAAAAACCA+TGG - chr6.2:39647047-39647066 None:intergenic 50.0%
ATAAAGCCAAGCCGGTCTCT+CGG - chr6.2:39648388-39648407 None:intergenic 50.0%
ATCGACAGAGTCTGGTTACC+AGG + chr6.2:39647898-39647917 MS.gene058889:intron 50.0%
CCCGTGAAGAGAAATGGTAG+TGG + chr6.2:39647479-39647498 MS.gene058889:CDS 50.0%
CCTCTTCACCTGCAATGGAA+AGG - chr6.2:39646788-39646807 None:intergenic 50.0%
CCTTTCCATTGCAGGTGAAG+AGG + chr6.2:39646785-39646804 MS.gene058889:CDS 50.0%
CGGAGAGAAATCTTCTCACC+AGG - chr6.2:39646627-39646646 None:intergenic 50.0%
CGGGAAAAGAGTAAGCCATG+AGG - chr6.2:39648544-39648563 None:intergenic 50.0%
GAGCATTCCACACATCCTCA+TGG + chr6.2:39648526-39648545 MS.gene058889:intron 50.0%
GAGGGAGGGAATAAAGTAGC+AGG - chr6.2:39647665-39647684 None:intergenic 50.0%
GAGTAAGCCATGAGGATGTG+TGG - chr6.2:39648536-39648555 None:intergenic 50.0%
GATGGCGCAACAATCCTAAC+CGG - chr6.2:39647542-39647561 None:intergenic 50.0%
GGCTGTATGTCCATTACTGC+AGG + chr6.2:39647161-39647180 MS.gene058889:CDS 50.0%
GGTGAGAGTCGTAACAGAGA+AGG - chr6.2:39646712-39646731 None:intergenic 50.0%
GGTTCGTGGACATAGCAGTA+AGG - chr6.2:39648305-39648324 None:intergenic 50.0%
GTTCTTTCACCCTCGTGACA+TGG + chr6.2:39647001-39647020 MS.gene058889:CDS 50.0%
TGCGATGAAGGAGAAGATGC+CGG + chr6.2:39646914-39646933 MS.gene058889:CDS 50.0%
TGTCACGAGGGTGAAAGAAC+TGG - chr6.2:39647001-39647020 None:intergenic 50.0%
! ATGACCCAGACAGAGGCATA+TGG + chr6.2:39648211-39648230 MS.gene058889:intron 50.0%
! ATGGAGCACCTTTCCATTGC+AGG + chr6.2:39646777-39646796 MS.gene058889:CDS 50.0%
! TAATGGACATACAGCCGCTC+GGG - chr6.2:39647157-39647176 None:intergenic 50.0%
!! ATGGAAAGGTGCTCCATGAG+AGG - chr6.2:39646774-39646793 None:intergenic 50.0%
!! CGCTCAAGGAGTACTGATTC+TGG + chr6.2:39647764-39647783 MS.gene058889:CDS 50.0%
!! GTAATGGACATACAGCCGCT+CGG - chr6.2:39647158-39647177 None:intergenic 50.0%
!! GTTTTTCGACGGCCATCTTC+TGG + chr6.2:39647049-39647068 MS.gene058889:CDS 50.0%
!! TTGACTTGGTTGTCGAGGGA+GGG - chr6.2:39647679-39647698 None:intergenic 50.0%
!! TTTGACTTGGTTGTCGAGGG+AGG - chr6.2:39647680-39647699 None:intergenic 50.0%
AGTACTCGCTCCATGTCACG+AGG - chr6.2:39647014-39647033 None:intergenic 55.0%
AGTCGCCATATGCCTCTGTC+TGG - chr6.2:39648219-39648238 None:intergenic 55.0%
ATGTTGGAACTGCCGAGGTC+TGG + chr6.2:39647945-39647964 MS.gene058889:intron 55.0%
CAAGTCCATGATGTCCCGAG+CGG + chr6.2:39647140-39647159 MS.gene058889:CDS 55.0%
CCAGTGATGACAAACGAGGG+GGG + chr6.2:39648361-39648380 MS.gene058889:intron 55.0%
CCTTAGGATGTCCCAGACCT+CGG - chr6.2:39647960-39647979 None:intergenic 55.0%
CTCGTAGGGTTATCGCATCC+TGG + chr6.2:39646606-39646625 MS.gene058889:CDS 55.0%
CTGCTATGTCCACGAACCCT+TGG + chr6.2:39648307-39648326 MS.gene058889:intron 55.0%
GACGCATATCTCCATGGCTG+TGG + chr6.2:39647628-39647647 MS.gene058889:CDS 55.0%
GACGGCCATCTTCTGGTACT+AGG + chr6.2:39647056-39647075 MS.gene058889:CDS 55.0%
GGAACCTTCAAGGCTCTCAG+CGG - chr6.2:39646847-39646866 None:intergenic 55.0%
GTACTCGCTCCATGTCACGA+GGG - chr6.2:39647013-39647032 None:intergenic 55.0%
GTCGCCATATGCCTCTGTCT+GGG - chr6.2:39648218-39648237 None:intergenic 55.0%
GTTGCGCCATCACAGAAAGC+AGG + chr6.2:39647551-39647570 MS.gene058889:CDS 55.0%
TCAAAGTGGCTGCGAGAGGA+TGG + chr6.2:39647512-39647531 MS.gene058889:CDS 55.0%
TGGATCAAAGTGGCTGCGAG+AGG + chr6.2:39647508-39647527 MS.gene058889:CDS 55.0%
TGTGCCCCCGTGAAGAGAAA+TGG + chr6.2:39647473-39647492 MS.gene058889:CDS 55.0%
TGTTGGAACTGCCGAGGTCT+GGG + chr6.2:39647946-39647965 MS.gene058889:intron 55.0%
!! CTGATGATGGCACACGCCTT+TGG + chr6.2:39647438-39647457 MS.gene058889:CDS 55.0%
AAGTGGCTGCGAGAGGATGG+TGG + chr6.2:39647515-39647534 MS.gene058889:CDS 60.0%
AGGATCTTCTCACGGCGGCA+CGG - chr6.2:39646647-39646666 None:intergenic 60.0%
AGTCTGGTTACCAGGCCTGC+CGG + chr6.2:39647906-39647925 MS.gene058889:intron 60.0%
CCCCCCTCGTTTGTCATCAC+TGG - chr6.2:39648364-39648383 None:intergenic 60.0%
CTCGGGGACGCATATCTCCA+TGG + chr6.2:39647622-39647641 MS.gene058889:CDS 60.0%
TACAGCCGCTCGGGACATCA+TGG - chr6.2:39647148-39647167 None:intergenic 60.0%
! CCGAGGTCTGGGACATCCTA+AGG + chr6.2:39647957-39647976 MS.gene058889:intron 60.0%
! GAGAGGATGGTGGTCCGGTT+AGG + chr6.2:39647525-39647544 MS.gene058889:CDS 60.0%
CTCATTTCGTCCGGCAGGCC+TGG - chr6.2:39647919-39647938 None:intergenic 65.0%
GCTGCCGCTGAGAGCCTTGA+AGG + chr6.2:39646840-39646859 MS.gene058889:CDS 65.0%
! GCTGCGAGAGGATGGTGGTC+CGG + chr6.2:39647520-39647539 MS.gene058889:CDS 65.0%
ACGAGGGGGGTCCGAGAGAC+CGG + chr6.2:39648374-39648393 MS.gene058889:intron 70.0%
GGGGGTCCGAGAGACCGGCT+TGG + chr6.2:39648379-39648398 MS.gene058889:intron 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 39646513 39648621 39646513 ID=MS.gene058889
chr6.2 mRNA 39646513 39648621 39646513 ID=MS.gene058889.t1;Parent=MS.gene058889
chr6.2 exon 39646513 39647182 39646513 ID=MS.gene058889.t1.exon1;Parent=MS.gene058889.t1
chr6.2 CDS 39646513 39647182 39646513 ID=cds.MS.gene058889.t1;Parent=MS.gene058889.t1
chr6.2 exon 39647405 39647799 39647405 ID=MS.gene058889.t1.exon2;Parent=MS.gene058889.t1
chr6.2 CDS 39647405 39647799 39647405 ID=cds.MS.gene058889.t1;Parent=MS.gene058889.t1
chr6.2 exon 39648592 39648621 39648592 ID=MS.gene058889.t1.exon3;Parent=MS.gene058889.t1
chr6.2 CDS 39648592 39648621 39648592 ID=cds.MS.gene058889.t1;Parent=MS.gene058889.t1
Gene Sequence

>MS.gene058889

ATGGTTACGATTTCAGAATCGCTCTTCTTTGCGATTGAGCGATTGTTTTTCTTTGCGATTCCAGAATCGTTTTTCTACATAATCGTTTTTTCTCTCGTAGGGTTATCGCATCCTGGTGAGAAGATTTCTCTCCGTGCCGCCGTGAGAAGATCCTTTATCTCCTTTCCTTCTTTCCTTTCCCTGTTACGACTTTCACCCTTCTCTGTTACGACTCTCACCCTTCTCTGTTACACCTCACTTTTGCTCACCGTTCATAATCCTCTCATGGAGCACCTTTCCATTGCAGGTGAAGAGGATGAAATCGAACTTCAATTTGATGAACAGCAAGCTGCCGCTGAGAGCCTTGAAGGTTCCTATGTTCTAGTTGGACGTTTTCTCACCGACCGCCGTATTCGAATCTATGCGATGAAGGAGAAGATGCCGGAGTTCATGAAACCTGTTTGTCAGATGTCTATTAAGGAGGTTGATGACAACCTGTACCTATTCCAGTTCTTTCACCCTCGTGACATGGAGCGAGTACTCAAGAAAGGTCCATGGTTTTTCGACGGCCATCTTCTGGTACTAGGAATTTTGCAGCAAGGAAGCACGCCAAAATATGTTCCTCTCAATCATATACCCTTCTGGTTGCAAGTCCATGATGTCCCGAGCGGCTGTATGTCCATTACTGCAGGTAAACAATTGGGTAATTTCGTTGGCGAATATATGGAATATGACGAGAAAAATAATTCCAATTTTCTTGCTTCTTATATGCGTATTCGTGTTATGCTGGATGTTTGAAAACCATTTATCCGATTTAAAAAGATTAAGACTAAGACTGGTTCACATGAAGTTCGTTTCAAATATGAGAGACTCGGGTCCTTTTGTTATTTTTGTGGGTTGCTTGGCCACACAGATGAATTCTGCAGCAGCTTGTATGCCAATGCTACTGATGATGGCACACGCCTTTGGAGTTCTGAGCTATGTGCCCCCGTGAAGAGAAATGGTAGTGGAAGTTCTGGATCAAAGTGGCTGCGAGAGGATGGTGGTCCGGTTAGGATTGTTGCGCCATCACAGAAAGCAGGACATGTCCCTAGTAAACAACATTCATATGTTCCAATAGTAATTAATAACTCGGGGACGCATATCTCCATGGCTGTGGCATTCATAAATCCTGCTACTTTATTCCCTCCCTCGACAACCAAGTCAAATTTAACTCCGGATGTAAACGAGACTGAATTGATGGAAGAAGAATTAAATGGTACTGTTAAAAAGCGCTCAAGGAGTACTGATTCTGGAACTGCACCAAAGGTAGATACAAATCTGAATCAACAGTCTGACACGACCATTATGAAAGATGTGCAGCGTACGGTTCCACAACAAACTACAATGGATCAGCAGCATTTTTTATCGACAGAGTCTGGTTACCAGGCCTGCCGGACGAAATGAGTATTTTATGTTGGAACTGCCGAGGTCTGGGACATCCTAAGGTAGTTCCTAGTCTAAAAGACCTTATCTGTGTCTATAAACCGGATATTTTTTTCCATATTGAAACTTTGTCTCACTCTAATAAAATAAGAGAAGTTTTTTATTTGCTTGGTTATGATTCTTACTTTACTGTTGATAGAGAAGGACGTAGTGGTTGTCTTGCTGTTATTTGGAAGTCCTCTATCCAATGTAATATTATAAATTAGTCTTCCAATTTCATTAACTTGCAAGTTAATGACCCAGACAGAGGCATATGGCGACTAACTTCTTTTTGGGGCTATTCTAACAATGCACAACGTCGACAATCTTGGAATCTCCTCCGTGACCTTACTGCTATGTCCACGAACCCTTGGTGTATTATAGGTGATTTTAATGATCTTCTTACCAGTGATGACAAACGAGGGGGGTCCGAGAGACCGGCTTGGCTTTATAATGGCTTCCGTTCTGCAGTAAATGATTGTAATTTACATGACCTCCCTCTAGAAGGATATCCTTTTACCTGGTTCAAAAGTCTTGGAACTCCTCTTGCGGTTGAAGAAAGACTAGATAGAGCATTCCACACATCCTCATGGCTTACTCTTTTCCCGAATGCAAGATTAATTAATCTTGTTGCAGCCACTTCAGATCATTCACCTATCCTTCTAA
Protein sequence

>MS.gene058889.t1

MVTISESLFFAIERLFFFAIPESFFYIIVFSLVGLSHPGEKISLRAAVRRSFISFPSFLSLLRLSPFSVTTLTLLCYTSLLLTVHNPLMEHLSIAGEEDEIELQFDEQQAAAESLEGSYVLVGRFLTDRRIRIYAMKEKMPEFMKPVCQMSIKEVDDNLYLFQFFHPRDMERVLKKGPWFFDGHLLVLGILQQGSTPKYVPLNHIPFWLQVHDVPSGCMSITADEFCSSLYANATDDGTRLWSSELCAPVKRNGSGSSGSKWLREDGGPVRIVAPSQKAGHVPSKQHSYVPIVINNSGTHISMAVAFINPATLFPPSTTKSNLTPDVNETELMEEELNGTVKKRSRSTDSGTAPKPLQIIHLSF