Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015248.t1 | RHN74097.1 | 60.3 | 753 | 116 | 5 | 3 | 575 | 4 | 753 | 1.70E-234 | 822.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015248.t1 | A0A396JG42 | 60.3 | 753 | 116 | 5 | 3 | 575 | 4 | 753 | 1.2e-234 | 822.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015248.t1 | MTR_2g055450 | 66.981 | 106 | 20 | 1 | 577 | 682 | 246 | 336 | 8.16e-36 | 140 |
MS.gene015248.t1 | MTR_8g463110 | 39.310 | 145 | 88 | 0 | 576 | 720 | 189 | 333 | 2.56e-28 | 121 |
MS.gene015248.t1 | MTR_4g020630 | 37.500 | 152 | 95 | 0 | 570 | 721 | 119 | 270 | 3.26e-27 | 116 |
MS.gene015248.t1 | MTR_0042s0130 | 48.673 | 113 | 58 | 0 | 576 | 688 | 228 | 340 | 3.82e-27 | 113 |
MS.gene015248.t1 | MTR_1g051330 | 38.889 | 126 | 74 | 2 | 576 | 700 | 344 | 467 | 1.27e-20 | 97.4 |
MS.gene015248.t1 | MTR_6g034215 | 35.714 | 126 | 81 | 0 | 582 | 707 | 199 | 324 | 1.65e-20 | 93.6 |
MS.gene015248.t1 | MTR_1g100687 | 36.792 | 106 | 66 | 1 | 576 | 680 | 127 | 232 | 7.77e-17 | 80.9 |
MS.gene015248.t1 | MTR_6g033215 | 31.967 | 122 | 56 | 1 | 217 | 311 | 172 | 293 | 9.31e-16 | 79.0 |
MS.gene015248.t1 | MTR_4g020545 | 28.402 | 169 | 93 | 5 | 215 | 383 | 93 | 233 | 6.18e-14 | 73.6 |
MS.gene015248.t1 | MTR_0010s0370 | 38.889 | 72 | 44 | 0 | 217 | 288 | 77 | 148 | 2.55e-12 | 66.6 |
MS.gene015248.t1 | MTR_0010s0350 | 38.889 | 72 | 44 | 0 | 217 | 288 | 77 | 148 | 2.55e-12 | 66.6 |
MS.gene015248.t1 | MTR_4g103530 | 40.580 | 69 | 37 | 1 | 217 | 281 | 25 | 93 | 4.44e-12 | 66.2 |
MS.gene015248.t1 | MTR_5g085210 | 48.214 | 56 | 29 | 0 | 666 | 721 | 5 | 60 | 1.79e-11 | 65.1 |
MS.gene015248.t1 | MTR_3g053920 | 51.852 | 54 | 26 | 0 | 217 | 270 | 79 | 132 | 3.00e-11 | 65.5 |
MS.gene015248.t1 | MTR_2g063055 | 34.343 | 99 | 61 | 3 | 625 | 721 | 68 | 164 | 4.03e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015248.t1 | AT3G42140 | 31.579 | 114 | 71 | 2 | 216 | 329 | 65 | 171 | 4.56e-11 | 64.7 |
Find 183 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAATCTTTCTTCAGGTTTC+AGG | 0.118165 | 5.4:-9260327 | MS.gene015248:CDS |
TCAGCTGCACAAATACTTTC+TGG | 0.213335 | 5.4:+9258679 | None:intergenic |
AATATATATCTAGATGTTTC+TGG | 0.233510 | 5.4:-9260118 | MS.gene015248:CDS |
TTGCAGTATTCTTGCACTTA+AGG | 0.275675 | 5.4:-9260356 | MS.gene015248:CDS |
GAATCTCTTGTCTGGTGTTT+TGG | 0.285750 | 5.4:+9257364 | None:intergenic |
GCATGGAAAACTTCGTATTA+AGG | 0.287571 | 5.4:+9257184 | None:intergenic |
GCAAGGAGGGATGGCAGTTT+GGG | 0.288926 | 5.4:-9260404 | MS.gene015248:CDS |
AGCAAGGAGGGATGGCAGTT+TGG | 0.292251 | 5.4:-9260405 | MS.gene015248:CDS |
TGGCAGATTACTGCAAGTTT+TGG | 0.293942 | 5.4:-9260156 | MS.gene015248:CDS |
TTTGAGTTGTTTAGGTCCTT+TGG | 0.294934 | 5.4:+9258444 | None:intergenic |
TATTCTTGCACTTAAGGATA+TGG | 0.305828 | 5.4:-9260350 | MS.gene015248:CDS |
GATATGGCTAATCTTTCTTC+AGG | 0.313274 | 5.4:-9260334 | MS.gene015248:CDS |
AATTCTATTCAACTTTCTTC+TGG | 0.322665 | 5.4:+9257150 | None:intergenic |
CAGTTTGGCCGGGTGAAGAT+TGG | 0.329897 | 5.4:-9258862 | MS.gene015248:CDS |
AAATTCCAACTTTGATTTGC+TGG | 0.332555 | 5.4:-9259585 | MS.gene015248:CDS |
CATTGTGAGGTAATCGTAAA+AGG | 0.332606 | 5.4:+9259658 | None:intergenic |
GGTGAAGATTGGGAGGGATT+TGG | 0.335441 | 5.4:-9258851 | MS.gene015248:CDS |
TCCTTGCATAGCACGCTTCT+TGG | 0.336551 | 5.4:-9260176 | MS.gene015248:CDS |
AACAACGTGCTAAGAAGTTT+TGG | 0.339812 | 5.4:-9257221 | MS.gene015248:CDS |
GATTGAGCAAGCTGCATAAC+TGG | 0.346165 | 5.4:+9258709 | None:intergenic |
GATCCAACAAGGTGTTTGTT+TGG | 0.349383 | 5.4:-9258775 | MS.gene015248:CDS |
GTGTGATCCGTACTGGTTCT+TGG | 0.349579 | 5.4:-9259446 | MS.gene015248:CDS |
TGATTTGCTGGACTGCTGTT+TGG | 0.352328 | 5.4:-9259573 | MS.gene015248:intron |
TCTCATCAGAAGGATCATTC+TGG | 0.360305 | 5.4:-9260244 | MS.gene015248:CDS |
TCTCAACGATGGCAAGGTTA+TGG | 0.362232 | 5.4:-9257456 | MS.gene015248:CDS |
CTGTTATGTTTGCGGCAGGT+TGG | 0.364300 | 5.4:-9259097 | MS.gene015248:CDS |
TCTCCAAACAAACACCTTGT+TGG | 0.366311 | 5.4:+9258772 | None:intergenic |
CAAGCTCACAATCTTCCATT+TGG | 0.366426 | 5.4:-9259333 | MS.gene015248:CDS |
AAATCAAAGTTGGAATTTGC+AGG | 0.375102 | 5.4:+9259590 | None:intergenic |
GTGTTGTGGATCTATCTAAA+TGG | 0.384569 | 5.4:-9257401 | MS.gene015248:CDS |
TGTTTCTGGAAGCAACCTTC+AGG | 0.391835 | 5.4:-9260104 | MS.gene015248:intron |
TCTTTCAATCATGCTCAGTT+TGG | 0.393491 | 5.4:-9258877 | MS.gene015248:CDS |
CCGCAACCTGTGCCTAGTTC+CGG | 0.393754 | 5.4:-9257540 | MS.gene015248:CDS |
GATAATTTCTGTTATGTTTG+CGG | 0.400723 | 5.4:-9259105 | MS.gene015248:CDS |
TGGTTTCATGACAGAATCAA+TGG | 0.401097 | 5.4:-9259313 | MS.gene015248:CDS |
GAATCAATGGGCTGTCTTCT+CGG | 0.402548 | 5.4:-9259300 | MS.gene015248:CDS |
GCCTCCTATATCACACTTAA+CGG | 0.404305 | 5.4:-9258551 | MS.gene015248:CDS |
TGTTATGTTTGCGGCAGGTT+GGG | 0.409593 | 5.4:-9259096 | MS.gene015248:CDS |
TCAATCATGCTCAGTTTGGC+CGG | 0.410305 | 5.4:-9258873 | MS.gene015248:CDS |
AGTGTTGTCAGCATGGAAAT+TGG | 0.417558 | 5.4:+9259631 | None:intergenic |
ATCACACTTAACGGCATCAT+TGG | 0.420382 | 5.4:-9258542 | MS.gene015248:CDS |
TTAAGCTTGTGAATGGTACT+TGG | 0.421722 | 5.4:-9258807 | MS.gene015248:CDS |
TATTCTTCGTGCTGAATTCA+AGG | 0.423524 | 5.4:-9259004 | MS.gene015248:CDS |
GTTAAAATAACTAACATTAG+AGG | 0.423719 | 5.4:+9257296 | None:intergenic |
GATGCCGTTAAGTGTGATAT+AGG | 0.424134 | 5.4:+9258547 | None:intergenic |
AGAACCTCTTGTGGCGAGTT+GGG | 0.425908 | 5.4:-9259184 | MS.gene015248:CDS |
TCATCACTAACTGTCGGATT+AGG | 0.434896 | 5.4:+9258487 | None:intergenic |
TGTTGAAGAAGGCAAGCGTT+GGG | 0.435153 | 5.4:-9259031 | MS.gene015248:CDS |
GGATGGCAGTTTGGGGAAGC+AGG | 0.438798 | 5.4:-9260396 | MS.gene015248:CDS |
AGTTTGGCCGGGTGAAGATT+GGG | 0.444737 | 5.4:-9258861 | MS.gene015248:CDS |
GAAGACAATTATGTTGAAGA+AGG | 0.444839 | 5.4:-9259042 | MS.gene015248:CDS |
AAAGCGAAAGCGACATTGAC+CGG | 0.451446 | 5.4:+9257521 | None:intergenic |
TAACATGTTAAGACATAGGT+TGG | 0.453146 | 5.4:-9257277 | MS.gene015248:CDS |
TAGTGATTGTTTCGAATGAT+TGG | 0.456799 | 5.4:-9260526 | None:intergenic |
ATGCTGAAGGTTGGCCTAAG+TGG | 0.459601 | 5.4:-9258514 | MS.gene015248:CDS |
TTCTGGTGCTTGCTGCCGCA+TGG | 0.460411 | 5.4:+9257167 | None:intergenic |
GGCTAGTTGAACCTGAGTTT+AGG | 0.461625 | 5.4:-9257488 | MS.gene015248:CDS |
AGTCTTACGAATCTCTTGTC+TGG | 0.465492 | 5.4:+9257356 | None:intergenic |
TGAGGAACGCATTGCACGAT+TGG | 0.468509 | 5.4:-9258650 | MS.gene015248:CDS |
GAATTCAAGGGCAGCAGTAC+CGG | 0.468900 | 5.4:-9258991 | MS.gene015248:CDS |
ATAAATATCATTCAGTATCA+AGG | 0.473958 | 5.4:-9259740 | MS.gene015248:CDS |
TGATCAAAGATGATATGTTC+TGG | 0.475541 | 5.4:-9257245 | MS.gene015248:CDS |
TTGAATTCAGCACGAAGAAT+AGG | 0.480103 | 5.4:+9259006 | None:intergenic |
TTGGTGTTACGCTCTCTGTT+TGG | 0.485697 | 5.4:-9260507 | MS.gene015248:CDS |
CCGGAGGGGTTGACAATCAA+TGG | 0.488317 | 5.4:-9258972 | MS.gene015248:CDS |
CTGGATCAGTGATGCATGGT+AGG | 0.490003 | 5.4:-9260225 | MS.gene015248:CDS |
GATTCTGTCATGAAACCAAA+TGG | 0.491687 | 5.4:+9259318 | None:intergenic |
GAGTTGTTTAGGTCCTTTGG+AGG | 0.492404 | 5.4:+9258447 | None:intergenic |
CAATCATGCTCAGTTTGGCC+GGG | 0.496015 | 5.4:-9258872 | MS.gene015248:CDS |
AGGGTAGTGATCAGAAGATG+TGG | 0.496508 | 5.4:+9257581 | None:intergenic |
GTTTCAGTTCTTCCATCGTA+AGG | 0.498528 | 5.4:-9259478 | MS.gene015248:intron |
CGACCCAACAACTACTCTGT+TGG | 0.503641 | 5.4:-9259376 | MS.gene015248:CDS |
GCAGTCCAGCAAATCAAAGT+TGG | 0.506257 | 5.4:+9259580 | None:intergenic |
ATTTCTGTTATGTTTGCGGC+AGG | 0.508708 | 5.4:-9259101 | MS.gene015248:CDS |
GGTGTTTGTTTCTCATCAGA+AGG | 0.511185 | 5.4:-9260254 | MS.gene015248:CDS |
GGTTTCATGACAGAATCAAT+GGG | 0.515352 | 5.4:-9259312 | MS.gene015248:CDS |
TGTCCAACAGAGTAGTTGTT+GGG | 0.515953 | 5.4:+9259373 | None:intergenic |
TGGTGCGATGCATGATGGCA+TGG | 0.518435 | 5.4:-9258914 | MS.gene015248:CDS |
ATGGAGCGTGTGATCCGTAC+TGG | 0.518491 | 5.4:-9259453 | MS.gene015248:CDS |
CCATTGATTGTCAACCCCTC+CGG | 0.524266 | 5.4:+9258972 | None:intergenic |
AAGGACCTAAACAACTCAAA+AGG | 0.526078 | 5.4:-9258441 | MS.gene015248:CDS |
TCATAATGATAGCTATTGTC+CGG | 0.526404 | 5.4:-9259073 | MS.gene015248:CDS |
GAGAACCTCTTGTGGCGAGT+TGG | 0.526455 | 5.4:-9259185 | MS.gene015248:CDS |
TACTAGTCATAAGGTGCGTA+CGG | 0.533773 | 5.4:-9260290 | MS.gene015248:CDS |
TAAGCTTGTGAATGGTACTT+GGG | 0.533951 | 5.4:-9258806 | MS.gene015248:CDS |
TTCTGATGGTGGTCAAGATA+CGG | 0.534188 | 5.4:-9258347 | MS.gene015248:CDS |
GTGTCCAACAGAGTAGTTGT+TGG | 0.535599 | 5.4:+9259372 | None:intergenic |
AAGCGACATTGACCGGAACT+AGG | 0.537113 | 5.4:+9257528 | None:intergenic |
TTAAGTGTGATATAGGAGGC+TGG | 0.537612 | 5.4:+9258554 | None:intergenic |
ATCAATGGCTTCATGATAGT+AGG | 0.538858 | 5.4:-9258957 | MS.gene015248:CDS |
AATCCGACAGTTAGTGATGA+TGG | 0.542371 | 5.4:-9258484 | MS.gene015248:CDS |
AAGGAAGGTGTTAAGATGAA+AGG | 0.548628 | 5.4:-9258379 | MS.gene015248:CDS |
GCCAAGAAGCGTGCTATGCA+AGG | 0.549192 | 5.4:+9260175 | None:intergenic |
TGCAATTTGATTGAATGTGA+AGG | 0.551860 | 5.4:+9259714 | None:intergenic |
GGTAATCGTAAAAGGTATGA+AGG | 0.554633 | 5.4:+9259666 | None:intergenic |
GAAAGTGCTCCGTCCGATGT+TGG | 0.555466 | 5.4:-9258592 | MS.gene015248:CDS |
TAATTGTCTTCATAACGATC+CGG | 0.556135 | 5.4:+9259054 | None:intergenic |
CCGGAACTAGGCACAGGTTG+CGG | 0.558797 | 5.4:+9257540 | None:intergenic |
ATGTTGAAGAAGGCAAGCGT+TGG | 0.560092 | 5.4:-9259032 | MS.gene015248:CDS |
GTTCTGCAGAAAGTCTCCTT+CGG | 0.562217 | 5.4:-9259402 | MS.gene015248:CDS |
CTGACAACACTACTGCCAAT+CGG | 0.562524 | 5.4:-9259619 | MS.gene015248:CDS |
TGATTGAGTTTATTCACAAG+AGG | 0.564259 | 5.4:+9257426 | None:intergenic |
AGGAACATGATGAGCAAGGA+GGG | 0.565067 | 5.4:-9260417 | MS.gene015248:CDS |
TGGCAGTAGTGTTGTCAGCA+TGG | 0.565117 | 5.4:+9259624 | None:intergenic |
ATTTGCAGGAGCAGACCGAT+TGG | 0.566589 | 5.4:+9259604 | None:intergenic |
ATGCAGCTTGCTCAATCTCA+TGG | 0.570432 | 5.4:-9258703 | MS.gene015248:CDS |
GAGACTTTCTGCAGAACTAG+AGG | 0.570603 | 5.4:+9259408 | None:intergenic |
GTTCTTCCATCGTAAGGACA+TGG | 0.572999 | 5.4:-9259472 | MS.gene015248:CDS |
TAAGTGTGATATAGGAGGCT+GGG | 0.573965 | 5.4:+9258555 | None:intergenic |
TGGAGAAAGTGTACCGCAAG+TGG | 0.574007 | 5.4:-9258755 | MS.gene015248:CDS |
CAAAGAGCCAAGAACCAGTA+CGG | 0.576391 | 5.4:+9259439 | None:intergenic |
ACATGATGAGCAAGGAGGGA+TGG | 0.576695 | 5.4:-9260413 | MS.gene015248:CDS |
GCGTACGGTCTCATGTGGTA+TGG | 0.576892 | 5.4:-9260275 | MS.gene015248:CDS |
CACGATTGGTTCAAGAAGCT+AGG | 0.577031 | 5.4:-9258636 | MS.gene015248:CDS |
TTTGTTTCTCAACGATGGCA+AGG | 0.577495 | 5.4:-9257462 | MS.gene015248:CDS |
TCGGATTAGGCATCCCACTT+AGG | 0.581025 | 5.4:+9258500 | None:intergenic |
TGGTCAAGATACGGCTAGCA+AGG | 0.581487 | 5.4:-9258338 | MS.gene015248:CDS |
GGTCGTTTGTTTCTCAACGA+TGG | 0.581511 | 5.4:-9257467 | MS.gene015248:CDS |
ATCATTGGCGCATATGCTGA+AGG | 0.584783 | 5.4:-9258527 | MS.gene015248:CDS |
GGCTCTAATGATTCTGATGG+TGG | 0.586250 | 5.4:-9258358 | MS.gene015248:CDS |
GGAGCACAATCTAACAAAAG+AGG | 0.587191 | 5.4:+9257561 | None:intergenic |
TAAACTCAATCAATGTGTTG+TGG | 0.587729 | 5.4:-9257415 | MS.gene015248:CDS |
TTCAAGGGCAGCAGTACCGG+AGG | 0.590534 | 5.4:-9258988 | MS.gene015248:CDS |
AATGCCCAACTCGCCACAAG+AGG | 0.591640 | 5.4:+9259180 | None:intergenic |
ACAACTCAAAAGGCTCCGCA+TGG | 0.592337 | 5.4:-9258431 | MS.gene015248:CDS |
AGTTGTTGGGTCGTCACCGA+AGG | 0.593580 | 5.4:+9259386 | None:intergenic |
TTGGCGCATATGCTGAAGGT+TGG | 0.594650 | 5.4:-9258523 | MS.gene015248:CDS |
TGGCAGTTTGGGGAAGCAGG+AGG | 0.595632 | 5.4:-9260393 | MS.gene015248:CDS |
TGATATAGGAGGCTGGGCAG+CGG | 0.596815 | 5.4:+9258561 | None:intergenic |
ATTCTTCGTGCTGAATTCAA+GGG | 0.599382 | 5.4:-9259003 | MS.gene015248:CDS |
GCATGATGGCATGGGTCTAG+TGG | 0.599661 | 5.4:-9258905 | MS.gene015248:CDS |
TGGATCAGTGATGCATGGTA+GGG | 0.601776 | 5.4:-9260224 | MS.gene015248:CDS |
GTGATGCTTTACCAACATGT+AGG | 0.602333 | 5.4:-9260456 | MS.gene015248:CDS |
GTTGGACACAATTGAGATGT+GGG | 0.604163 | 5.4:-9259358 | MS.gene015248:CDS |
GGAGCACTTTCAATTGAGAG+AGG | 0.605273 | 5.4:+9258604 | None:intergenic |
AGACTTTCTGCAGAACTAGA+GGG | 0.607559 | 5.4:+9259409 | None:intergenic |
GGACACTGTTGAGAAGACTA+AGG | 0.607998 | 5.4:-9258398 | MS.gene015248:CDS |
CATTGACCGGAACTAGGCAC+AGG | 0.609205 | 5.4:+9257534 | None:intergenic |
GAGCACAATCTAACAAAAGA+GGG | 0.611142 | 5.4:+9257562 | None:intergenic |
AAAGGCTCTAATGATTCTGA+TGG | 0.611789 | 5.4:-9258361 | MS.gene015248:CDS |
CAAGGAGGGATGGCAGTTTG+GGG | 0.612120 | 5.4:-9260403 | MS.gene015248:CDS |
GGTGCGATGCATGATGGCAT+GGG | 0.614147 | 5.4:-9258913 | MS.gene015248:CDS |
TGCTGAAGGTTGGCCTAAGT+GGG | 0.618386 | 5.4:-9258513 | MS.gene015248:CDS |
TTGGCCGGGTGAAGATTGGG+AGG | 0.623223 | 5.4:-9258858 | MS.gene015248:CDS |
GAGTTGGGCATTTGAAAGAG+AGG | 0.624526 | 5.4:-9259169 | MS.gene015248:CDS |
ACAGTTAAGATTACCTCCAA+AGG | 0.624589 | 5.4:-9258460 | MS.gene015248:CDS |
GTTGAAGAAGGCAAGCGTTG+GGG | 0.624795 | 5.4:-9259030 | MS.gene015248:CDS |
TAGAGGTATCCACATGGGAA+CGG | 0.624876 | 5.4:+9257313 | None:intergenic |
AGCAATGGTGCGATGCATGA+TGG | 0.624888 | 5.4:-9258919 | MS.gene015248:CDS |
GTACCATCATCACTAACTGT+CGG | 0.626401 | 5.4:+9258481 | None:intergenic |
TTAAGTGCAAGAATACTGCA+AGG | 0.627344 | 5.4:+9260358 | None:intergenic |
CTTCATGATAGTAGGAAGAG+TGG | 0.630322 | 5.4:-9258949 | MS.gene015248:CDS |
TGTTGGACACAATTGAGATG+TGG | 0.631969 | 5.4:-9259359 | MS.gene015248:CDS |
CATTCTGGATCAGTGATGCA+TGG | 0.636659 | 5.4:-9260229 | MS.gene015248:CDS |
AATCCCTCCCAATCTTCACC+CGG | 0.637645 | 5.4:+9258854 | None:intergenic |
TAGGAGTATAGATGTTACAA+AGG | 0.638418 | 5.4:-9260437 | MS.gene015248:CDS |
AGTTGGGCATTTGAAAGAGA+GGG | 0.638703 | 5.4:-9259168 | MS.gene015248:CDS |
TAAGGTAGGAGAACCTCTTG+TGG | 0.640323 | 5.4:-9259193 | MS.gene015248:intron |
TCAAGGGCAGCAGTACCGGA+GGG | 0.642793 | 5.4:-9258987 | MS.gene015248:CDS |
CAGAGACGAGAAGAAAGTAA+CGG | 0.643279 | 5.4:+9260478 | None:intergenic |
TGGCCGGGTGAAGATTGGGA+GGG | 0.646391 | 5.4:-9258857 | MS.gene015248:CDS |
CACGCTCCATGTCCTTACGA+TGG | 0.647172 | 5.4:+9259466 | None:intergenic |
ACAAAGGAACATGATGAGCA+AGG | 0.647269 | 5.4:-9260421 | MS.gene015248:CDS |
ACTGTTGAGAAGACTAAGGA+AGG | 0.648597 | 5.4:-9258394 | MS.gene015248:CDS |
CAAGGGCAGCAGTACCGGAG+GGG | 0.649711 | 5.4:-9258986 | MS.gene015248:CDS |
GAAACAAACGACCTAAACTC+AGG | 0.657149 | 5.4:+9257477 | None:intergenic |
ACATCTATACTCCTACATGT+TGG | 0.657176 | 5.4:+9260445 | None:intergenic |
AAGGTGCGTACGGTCTCATG+TGG | 0.658060 | 5.4:-9260280 | MS.gene015248:CDS |
GCTTTCGCTTTGAGAATGCG+TGG | 0.659513 | 5.4:-9257509 | MS.gene015248:CDS |
AACATTAGAGGTATCCACAT+GGG | 0.659561 | 5.4:+9257308 | None:intergenic |
GCTCCGCATGGAAGAACTCG+AGG | 0.659574 | 5.4:-9258419 | MS.gene015248:CDS |
GGAAATTGGAAGCCATTGTG+AGG | 0.668368 | 5.4:+9259645 | None:intergenic |
TAAGTGCAAGAATACTGCAA+GGG | 0.673958 | 5.4:+9260359 | None:intergenic |
TGAAGCTATCCGTTCCCATG+TGG | 0.674747 | 5.4:-9257322 | MS.gene015248:CDS |
CATGATAGTAGGAAGAGTGG+TGG | 0.681655 | 5.4:-9258946 | MS.gene015248:CDS |
GCCGTTAAGTGTGATATAGG+AGG | 0.683079 | 5.4:+9258550 | None:intergenic |
AAGAGTGGTGGTGAGAGCAA+TGG | 0.684123 | 5.4:-9258934 | MS.gene015248:CDS |
GTATTAGAACCAACATCGGA+CGG | 0.684945 | 5.4:+9258583 | None:intergenic |
AGCGGTATTAGAACCAACAT+CGG | 0.697326 | 5.4:+9258579 | None:intergenic |
TTGTGCAGCTGAAAGTGATG+AGG | 0.702639 | 5.4:-9258668 | MS.gene015248:CDS |
AAGGAACATGATGAGCAAGG+AGG | 0.709557 | 5.4:-9260418 | MS.gene015248:CDS |
TAACATTAGAGGTATCCACA+TGG | 0.718961 | 5.4:+9257307 | None:intergenic |
TGTCCTCGAGTTCTTCCATG+CGG | 0.726264 | 5.4:+9258416 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAGAATAAATAAATTTATG+AGG | + | chr5.4:9257602-9257621 | None:intergenic | 15.0% |
!! | ATTACAAAAATATGTTTCTT+TGG | - | chr5.4:9257780-9257799 | MS.gene015248:intron | 15.0% |
!! | TATTCTCTAAATATGTTTAT+TGG | - | chr5.4:9257614-9257633 | MS.gene015248:intron | 15.0% |
!!! | AACATCTAGATATATATTTT+TGG | + | chr5.4:9257549-9257568 | None:intergenic | 15.0% |
!!! | ATTGAATATCCAATATATTT+TGG | + | chr5.4:9257808-9257827 | None:intergenic | 15.0% |
!!! | TATATTTTCTTTTCATATCT+TGG | - | chr5.4:9257730-9257749 | MS.gene015248:intron | 15.0% |
!!! | TTGAATATCCAATATATTTT+GGG | + | chr5.4:9257807-9257826 | None:intergenic | 15.0% |
!! | AAATATACACCAAATAAACT+TGG | + | chr5.4:9257642-9257661 | None:intergenic | 20.0% |
!! | AATATATATCTAGATGTTTC+TGG | - | chr5.4:9257551-9257570 | MS.gene015248:CDS | 20.0% |
!! | ATAAATATCATTCAGTATCA+AGG | - | chr5.4:9257929-9257948 | MS.gene015248:intron | 20.0% |
!! | GTTAAAATAACTAACATTAG+AGG | + | chr5.4:9260376-9260395 | None:intergenic | 20.0% |
!! | TGAAGAATTGAAATATATGT+TGG | - | chr5.4:9259564-9259583 | MS.gene015248:intron | 20.0% |
!!! | AGAATAATTTTGATTCTTGA+AGG | - | chr5.4:9258427-9258446 | MS.gene015248:CDS | 20.0% |
!!! | ATTTTAACATGTTAAGACAT+AGG | - | chr5.4:9260388-9260407 | MS.gene015248:CDS | 20.0% |
! | ATGTGGGATTAATAATGTAA+TGG | - | chr5.4:9259379-9259398 | MS.gene015248:CDS | 25.0% |
! | CCAAAATCATATTGATATAG+AGG | - | chr5.4:9259684-9259703 | MS.gene015248:CDS | 25.0% |
! | GATAATTTCTGTTATGTTTG+CGG | - | chr5.4:9258564-9258583 | MS.gene015248:CDS | 25.0% |
! | TTATTGGATCCAAGTTTATT+TGG | - | chr5.4:9257630-9257649 | MS.gene015248:intron | 25.0% |
! | TTTAAATTAGGAACTATGCT+CGG | + | chr5.4:9259475-9259494 | None:intergenic | 25.0% |
!! | CCTCTATATCAATATGATTT+TGG | + | chr5.4:9259687-9259706 | None:intergenic | 25.0% |
!!! | ATTTGGTGTATATTTTTGAG+AGG | - | chr5.4:9257647-9257666 | MS.gene015248:intron | 25.0% |
!!! | ATTTGTTTGGTTTTTATTGC+TGG | - | chr5.4:9257853-9257872 | MS.gene015248:intron | 25.0% |
!!! | TATTTTTGAGAGGATATACT+TGG | - | chr5.4:9257657-9257676 | MS.gene015248:intron | 25.0% |
AAATCAAAGTTGGAATTTGC+AGG | + | chr5.4:9258082-9258101 | None:intergenic | 30.0% | |
AAATCACCAATAATACACCA+AGG | + | chr5.4:9259826-9259845 | None:intergenic | 30.0% | |
CTTACTGATATTCATATGGA+TGG | - | chr5.4:9259940-9259959 | MS.gene015248:intron | 30.0% | |
GAAGACAATTATGTTGAAGA+AGG | - | chr5.4:9258627-9258646 | MS.gene015248:CDS | 30.0% | |
TAAACTCAATCAATGTGTTG+TGG | - | chr5.4:9260254-9260273 | MS.gene015248:CDS | 30.0% | |
TAACATGTTAAGACATAGGT+TGG | - | chr5.4:9260392-9260411 | MS.gene015248:CDS | 30.0% | |
TAATTGTCTTCATAACGATC+CGG | + | chr5.4:9258618-9258637 | None:intergenic | 30.0% | |
TATTCTTGCACTTAAGGATA+TGG | - | chr5.4:9257319-9257338 | MS.gene015248:CDS | 30.0% | |
TCATAATGATAGCTATTGTC+CGG | - | chr5.4:9258596-9258615 | MS.gene015248:CDS | 30.0% | |
TCTTTGGTCCCAAAATATAT+TGG | - | chr5.4:9257796-9257815 | MS.gene015248:intron | 30.0% | |
TGATCAAAGATGATATGTTC+TGG | - | chr5.4:9260424-9260443 | MS.gene015248:CDS | 30.0% | |
TGATTGAGTTTATTCACAAG+AGG | + | chr5.4:9260246-9260265 | None:intergenic | 30.0% | |
TGCAATTTGATTGAATGTGA+AGG | + | chr5.4:9257958-9257977 | None:intergenic | 30.0% | |
TGGACTTACTGATATTCATA+TGG | - | chr5.4:9259936-9259955 | MS.gene015248:intron | 30.0% | |
TGGGATTAATAATGTAATGG+CGG | - | chr5.4:9259382-9259401 | MS.gene015248:CDS | 30.0% | |
TTAAATTAGGAACTATGCTC+GGG | + | chr5.4:9259474-9259493 | None:intergenic | 30.0% | |
! | CAAGGAAAATGAGTCTTATA+TGG | - | chr5.4:9259425-9259444 | MS.gene015248:CDS | 30.0% |
! | CATATAAGACTCATTTTCCT+TGG | + | chr5.4:9259427-9259446 | None:intergenic | 30.0% |
! | CTAATTTAAAGTACCTAGTC+CGG | - | chr5.4:9259485-9259504 | MS.gene015248:intron | 30.0% |
! | TAGGAGTATAGATGTTACAA+AGG | - | chr5.4:9257232-9257251 | MS.gene015248:CDS | 30.0% |
! | TGGTTTTTATTGCTGGATAT+GGG | - | chr5.4:9257860-9257879 | MS.gene015248:intron | 30.0% |
! | TGTTTTTCTGTTGATCGTAT+TGG | - | chr5.4:9259598-9259617 | MS.gene015248:CDS | 30.0% |
! | TTAATACGAAGTTTTCCATG+CGG | - | chr5.4:9260487-9260506 | MS.gene015248:CDS | 30.0% |
! | TTCGTAAAGCAAGATTTGTT+TGG | - | chr5.4:9257840-9257859 | MS.gene015248:intron | 30.0% |
!! | AAATTCCAACTTTGATTTGC+TGG | - | chr5.4:9258084-9258103 | MS.gene015248:intron | 30.0% |
!! | TCTTTTCATATCTTGGTTTG+TGG | - | chr5.4:9257737-9257756 | MS.gene015248:intron | 30.0% |
!! | TTGGTTTTTATTGCTGGATA+TGG | - | chr5.4:9257859-9257878 | MS.gene015248:intron | 30.0% |
!!! | CTGTTTTTTAAGCTTGTGAA+TGG | - | chr5.4:9258855-9258874 | MS.gene015248:CDS | 30.0% |
AAGGACCTAAACAACTCAAA+AGG | - | chr5.4:9259228-9259247 | MS.gene015248:intron | 35.0% | |
ACAGTTAAGATTACCTCCAA+AGG | - | chr5.4:9259209-9259228 | MS.gene015248:intron | 35.0% | |
ACATCTATACTCCTACATGT+TGG | + | chr5.4:9257227-9257246 | None:intergenic | 35.0% | |
AGAGAAATTGGATAGAGCTA+TGG | - | chr5.4:9260011-9260030 | MS.gene015248:intron | 35.0% | |
ATCAATGGCTTCATGATAGT+AGG | - | chr5.4:9258712-9258731 | MS.gene015248:CDS | 35.0% | |
ATTCTTCGTGCTGAATTCAA+GGG | - | chr5.4:9258666-9258685 | MS.gene015248:CDS | 35.0% | |
CATTGTGAGGTAATCGTAAA+AGG | + | chr5.4:9258014-9258033 | None:intergenic | 35.0% | |
CCAAGGAAGTTGAGAAATAT+TGG | + | chr5.4:9259809-9259828 | None:intergenic | 35.0% | |
CCAATATTTCTCAACTTCCT+TGG | - | chr5.4:9259806-9259825 | MS.gene015248:intron | 35.0% | |
CTATCCACTGATGAAAAGAA+AGG | - | chr5.4:9259856-9259875 | MS.gene015248:intron | 35.0% | |
GAGCACAATCTAACAAAAGA+GGG | + | chr5.4:9260110-9260129 | None:intergenic | 35.0% | |
GATATGGCTAATCTTTCTTC+AGG | - | chr5.4:9257335-9257354 | MS.gene015248:CDS | 35.0% | |
GATTATTGCATCCGGTTTAT+AGG | + | chr5.4:9259512-9259531 | None:intergenic | 35.0% | |
GATTCTGTCATGAAACCAAA+TGG | + | chr5.4:9258354-9258373 | None:intergenic | 35.0% | |
GCATGGAAAACTTCGTATTA+AGG | + | chr5.4:9260488-9260507 | None:intergenic | 35.0% | |
GGGATTAATAATGTAATGGC+GGG | - | chr5.4:9259383-9259402 | MS.gene015248:CDS | 35.0% | |
GGTTTCATGACAGAATCAAT+GGG | - | chr5.4:9258357-9258376 | MS.gene015248:CDS | 35.0% | |
GTGTTGTGGATCTATCTAAA+TGG | - | chr5.4:9260268-9260287 | MS.gene015248:CDS | 35.0% | |
TAAGCTTGTGAATGGTACTT+GGG | - | chr5.4:9258863-9258882 | MS.gene015248:CDS | 35.0% | |
TAAGTGCAAGAATACTGCAA+GGG | + | chr5.4:9257313-9257332 | None:intergenic | 35.0% | |
TAGCAAGGATGTTGTTATGA+GGG | - | chr5.4:9259346-9259365 | MS.gene015248:CDS | 35.0% | |
TATTCTTCGTGCTGAATTCA+AGG | - | chr5.4:9258665-9258684 | MS.gene015248:CDS | 35.0% | |
TCTTTCAATCATGCTCAGTT+TGG | - | chr5.4:9258792-9258811 | MS.gene015248:CDS | 35.0% | |
TGGTTTCATGACAGAATCAA+TGG | - | chr5.4:9258356-9258375 | MS.gene015248:CDS | 35.0% | |
TTAAGCTTGTGAATGGTACT+TGG | - | chr5.4:9258862-9258881 | MS.gene015248:CDS | 35.0% | |
TTAAGTGCAAGAATACTGCA+AGG | + | chr5.4:9257314-9257333 | None:intergenic | 35.0% | |
TTCACTTGGTTCAAAAGTCT+TGG | - | chr5.4:9259970-9259989 | MS.gene015248:intron | 35.0% | |
TTGAATTCAGCACGAAGAAT+AGG | + | chr5.4:9258666-9258685 | None:intergenic | 35.0% | |
TTGCAGTATTCTTGCACTTA+AGG | - | chr5.4:9257313-9257332 | MS.gene015248:CDS | 35.0% | |
! | AAAGGCTCTAATGATTCTGA+TGG | - | chr5.4:9259308-9259327 | MS.gene015248:CDS | 35.0% |
! | AACAACGTGCTAAGAAGTTT+TGG | - | chr5.4:9260448-9260467 | MS.gene015248:CDS | 35.0% |
! | ATAAGACTCATTTTCCTTGG+CGG | + | chr5.4:9259424-9259443 | None:intergenic | 35.0% |
! | CAACTTCCTTGGTGTATTAT+TGG | - | chr5.4:9259817-9259836 | MS.gene015248:intron | 35.0% |
! | CGGACTAGGTACTTTAAATT+AGG | + | chr5.4:9259487-9259506 | None:intergenic | 35.0% |
! | CTAATCTTTCTTCAGGTTTC+AGG | - | chr5.4:9257342-9257361 | MS.gene015248:CDS | 35.0% |
! | CTTTTACGATTACCTCACAA+TGG | - | chr5.4:9258012-9258031 | MS.gene015248:intron | 35.0% |
! | GGAAAATGAGTCTTATATGG+TGG | - | chr5.4:9259428-9259447 | MS.gene015248:CDS | 35.0% |
! | GGTAATCGTAAAAGGTATGA+AGG | + | chr5.4:9258006-9258025 | None:intergenic | 35.0% |
! | GTTTTGCACTACTAGTCATA+AGG | - | chr5.4:9257370-9257389 | MS.gene015248:CDS | 35.0% |
! | TGGAGGTTAACTGGATTTTA+TGG | - | chr5.4:9259730-9259749 | MS.gene015248:CDS | 35.0% |
! | TTCTGTTGATCGTATTGGTA+GGG | - | chr5.4:9259603-9259622 | MS.gene015248:CDS | 35.0% |
! | TTTCTGTTGATCGTATTGGT+AGG | - | chr5.4:9259602-9259621 | MS.gene015248:CDS | 35.0% |
!! | AACATTAGAGGTATCCACAT+GGG | + | chr5.4:9260364-9260383 | None:intergenic | 35.0% |
!! | AAGAAGTTTTGGTATCGTGA+TGG | - | chr5.4:9260459-9260478 | MS.gene015248:CDS | 35.0% |
!! | AAGGAAGGTGTTAAGATGAA+AGG | - | chr5.4:9259290-9259309 | MS.gene015248:intron | 35.0% |
!! | AGAAGTTTTGGTATCGTGAT+GGG | - | chr5.4:9260460-9260479 | MS.gene015248:CDS | 35.0% |
!! | TAACATTAGAGGTATCCACA+TGG | + | chr5.4:9260365-9260384 | None:intergenic | 35.0% |
!! | TTTCATATCTTGGTTTGTGG+CGG | - | chr5.4:9257740-9257759 | MS.gene015248:intron | 35.0% |
!! | TTTGAGTTGTTTAGGTCCTT+TGG | + | chr5.4:9259228-9259247 | None:intergenic | 35.0% |
AATCCGACAGTTAGTGATGA+TGG | - | chr5.4:9259185-9259204 | MS.gene015248:CDS | 40.0% | |
ACAAAGGAACATGATGAGCA+AGG | - | chr5.4:9257248-9257267 | MS.gene015248:CDS | 40.0% | |
ACGTTGTCATTGTTTCAGAC+AGG | + | chr5.4:9259534-9259553 | None:intergenic | 40.0% | |
ACTGTTGAGAAGACTAAGGA+AGG | - | chr5.4:9259275-9259294 | MS.gene015248:intron | 40.0% | |
AGACTTTCTGCAGAACTAGA+GGG | + | chr5.4:9258263-9258282 | None:intergenic | 40.0% | |
AGAGGTAAATGACTCGTTGA+GGG | - | chr5.4:9259702-9259721 | MS.gene015248:CDS | 40.0% | |
AGCGGTATTAGAACCAACAT+CGG | + | chr5.4:9259093-9259112 | None:intergenic | 40.0% | |
AGGATGTTGTTATGAGGGAT+AGG | - | chr5.4:9259351-9259370 | MS.gene015248:CDS | 40.0% | |
AGTCTTACGAATCTCTTGTC+TGG | + | chr5.4:9260316-9260335 | None:intergenic | 40.0% | |
AGTGTTGTCAGCATGGAAAT+TGG | + | chr5.4:9258041-9258060 | None:intergenic | 40.0% | |
AGTTGGGCATTTGAAAGAGA+GGG | - | chr5.4:9258501-9258520 | MS.gene015248:CDS | 40.0% | |
ATCACACTTAACGGCATCAT+TGG | - | chr5.4:9259127-9259146 | MS.gene015248:CDS | 40.0% | |
ATTTCTGTTATGTTTGCGGC+AGG | - | chr5.4:9258568-9258587 | MS.gene015248:CDS | 40.0% | |
CAAGCTCACAATCTTCCATT+TGG | - | chr5.4:9258336-9258355 | MS.gene015248:CDS | 40.0% | |
CAGAGACGAGAAGAAAGTAA+CGG | + | chr5.4:9257194-9257213 | None:intergenic | 40.0% | |
CCACTGATGAAAAGAAAGGT+AGG | - | chr5.4:9259860-9259879 | MS.gene015248:intron | 40.0% | |
CGAAACGAGTTAAAGTGAAC+TGG | + | chr5.4:9258145-9258164 | None:intergenic | 40.0% | |
CGAGTTAAAGTGAACTGGTT+TGG | + | chr5.4:9258140-9258159 | None:intergenic | 40.0% | |
CTAGCAAGGATGTTGTTATG+AGG | - | chr5.4:9259345-9259364 | MS.gene015248:CDS | 40.0% | |
CTTCATGATAGTAGGAAGAG+TGG | - | chr5.4:9258720-9258739 | MS.gene015248:CDS | 40.0% | |
GAAACAAACGACCTAAACTC+AGG | + | chr5.4:9260195-9260214 | None:intergenic | 40.0% | |
GAGCTATGGCTAATGATAGT+TGG | - | chr5.4:9260025-9260044 | MS.gene015248:intron | 40.0% | |
GAGGAGAAAGAATAACCTGA+AGG | + | chr5.4:9257583-9257602 | None:intergenic | 40.0% | |
GATGCCGTTAAGTGTGATAT+AGG | + | chr5.4:9259125-9259144 | None:intergenic | 40.0% | |
GATGTTGTTATGAGGGATAG+GGG | - | chr5.4:9259353-9259372 | MS.gene015248:CDS | 40.0% | |
GCCTCCTATATCACACTTAA+CGG | - | chr5.4:9259118-9259137 | MS.gene015248:CDS | 40.0% | |
GGAGCACAATCTAACAAAAG+AGG | + | chr5.4:9260111-9260130 | None:intergenic | 40.0% | |
GGATGTTGTTATGAGGGATA+GGG | - | chr5.4:9259352-9259371 | MS.gene015248:CDS | 40.0% | |
GTACCATCATCACTAACTGT+CGG | + | chr5.4:9259191-9259210 | None:intergenic | 40.0% | |
GTATTAGAACCAACATCGGA+CGG | + | chr5.4:9259089-9259108 | None:intergenic | 40.0% | |
GTGATGCTTTACCAACATGT+AGG | - | chr5.4:9257213-9257232 | MS.gene015248:CDS | 40.0% | |
GTTGGACACAATTGAGATGT+GGG | - | chr5.4:9258311-9258330 | MS.gene015248:intron | 40.0% | |
GTTTCAGTTCTTCCATCGTA+AGG | - | chr5.4:9258191-9258210 | MS.gene015248:intron | 40.0% | |
TAAGTGTGATATAGGAGGCT+GGG | + | chr5.4:9259117-9259136 | None:intergenic | 40.0% | |
TACTAGTCATAAGGTGCGTA+CGG | - | chr5.4:9257379-9257398 | MS.gene015248:CDS | 40.0% | |
TAGAGGTAAATGACTCGTTG+AGG | - | chr5.4:9259701-9259720 | MS.gene015248:CDS | 40.0% | |
TCAGACAGGATTATTGCATC+CGG | + | chr5.4:9259520-9259539 | None:intergenic | 40.0% | |
TCAGCTGCACAAATACTTTC+TGG | + | chr5.4:9258993-9259012 | None:intergenic | 40.0% | |
TCATCACTAACTGTCGGATT+AGG | + | chr5.4:9259185-9259204 | None:intergenic | 40.0% | |
TCTCATCAGAAGGATCATTC+TGG | - | chr5.4:9257425-9257444 | MS.gene015248:CDS | 40.0% | |
TCTCCAAACAAACACCTTGT+TGG | + | chr5.4:9258900-9258919 | None:intergenic | 40.0% | |
TGGATGGTTATGCTTTCACT+TGG | - | chr5.4:9259956-9259975 | MS.gene015248:intron | 40.0% | |
TGTCCAACAGAGTAGTTGTT+GGG | + | chr5.4:9258299-9258318 | None:intergenic | 40.0% | |
TGTTGGACACAATTGAGATG+TGG | - | chr5.4:9258310-9258329 | MS.gene015248:intron | 40.0% | |
TTAAGTGTGATATAGGAGGC+TGG | + | chr5.4:9259118-9259137 | None:intergenic | 40.0% | |
TTTATGGTATGCCAGAAGGA+GGG | - | chr5.4:9259746-9259765 | MS.gene015248:CDS | 40.0% | |
! | ATTGCTGGATATGGGCTTTT+TGG | - | chr5.4:9257868-9257887 | MS.gene015248:intron | 40.0% |
! | CCTACCTTTCTTTTCATCAG+TGG | + | chr5.4:9259863-9259882 | None:intergenic | 40.0% |
! | GAATCTCTTGTCTGGTGTTT+TGG | + | chr5.4:9260308-9260327 | None:intergenic | 40.0% |
! | GATCCAACAAGGTGTTTGTT+TGG | - | chr5.4:9258894-9258913 | MS.gene015248:CDS | 40.0% |
! | GGATTTTATGGTATGCCAGA+AGG | - | chr5.4:9259742-9259761 | MS.gene015248:CDS | 40.0% |
! | GGTGTTTGTTTCTCATCAGA+AGG | - | chr5.4:9257415-9257434 | MS.gene015248:CDS | 40.0% |
! | GTCTTATATGGTGGAACTGT+CGG | - | chr5.4:9259437-9259456 | MS.gene015248:CDS | 40.0% |
! | TAAGACTCATTTTCCTTGGC+GGG | + | chr5.4:9259423-9259442 | None:intergenic | 40.0% |
! | TCTGTTGATCGTATTGGTAG+GGG | - | chr5.4:9259604-9259623 | MS.gene015248:CDS | 40.0% |
! | TCTTATATGGTGGAACTGTC+GGG | - | chr5.4:9259438-9259457 | MS.gene015248:CDS | 40.0% |
! | TGGCAGATTACTGCAAGTTT+TGG | - | chr5.4:9257513-9257532 | MS.gene015248:CDS | 40.0% |
! | TTTGTTTCTCAACGATGGCA+AGG | - | chr5.4:9260207-9260226 | MS.gene015248:CDS | 40.0% |
! | TTTTATGGTATGCCAGAAGG+AGG | - | chr5.4:9259745-9259764 | MS.gene015248:CDS | 40.0% |
!! | GAAGTTTTGGTATCGTGATG+GGG | - | chr5.4:9260461-9260480 | MS.gene015248:CDS | 40.0% |
!! | GATGCATGGTAGGGTATTTT+TGG | - | chr5.4:9257454-9257473 | MS.gene015248:CDS | 40.0% |
!! | TTCTGATGGTGGTCAAGATA+CGG | - | chr5.4:9259322-9259341 | MS.gene015248:CDS | 40.0% |
AAAGCGAAAGCGACATTGAC+CGG | + | chr5.4:9260151-9260170 | None:intergenic | 45.0% | |
AAGGAACATGATGAGCAAGG+AGG | - | chr5.4:9257251-9257270 | MS.gene015248:CDS | 45.0% | |
AGGAACATGATGAGCAAGGA+GGG | - | chr5.4:9257252-9257271 | MS.gene015248:CDS | 45.0% | |
AGGGTAGTGATCAGAAGATG+TGG | + | chr5.4:9260091-9260110 | None:intergenic | 45.0% | |
ATCATTGGCGCATATGCTGA+AGG | - | chr5.4:9259142-9259161 | MS.gene015248:CDS | 45.0% | |
ATGTTGAAGAAGGCAAGCGT+TGG | - | chr5.4:9258637-9258656 | MS.gene015248:CDS | 45.0% | |
CAAAGAGCCAAGAACCAGTA+CGG | + | chr5.4:9258233-9258252 | None:intergenic | 45.0% | |
CATGATAGTAGGAAGAGTGG+TGG | - | chr5.4:9258723-9258742 | MS.gene015248:CDS | 45.0% | |
CATTCTGGATCAGTGATGCA+TGG | - | chr5.4:9257440-9257459 | MS.gene015248:CDS | 45.0% | |
CCAATCATGAGCTGACAGTA+AGG | + | chr5.4:9257698-9257717 | None:intergenic | 45.0% | |
CCTTACTGTCAGCTCATGAT+TGG | - | chr5.4:9257695-9257714 | MS.gene015248:intron | 45.0% | |
CGGAATCCTTGAATAAGCCA+CGG | + | chr5.4:9259898-9259917 | None:intergenic | 45.0% | |
CGTGGCTTATTCAAGGATTC+CGG | - | chr5.4:9259896-9259915 | MS.gene015248:intron | 45.0% | |
CTGACAACACTACTGCCAAT+CGG | - | chr5.4:9258050-9258069 | MS.gene015248:intron | 45.0% | |
GAGACTTTCTGCAGAACTAG+AGG | + | chr5.4:9258264-9258283 | None:intergenic | 45.0% | |
GAGGTAAATGACTCGTTGAG+GGG | - | chr5.4:9259703-9259722 | MS.gene015248:CDS | 45.0% | |
GAGTTGGGCATTTGAAAGAG+AGG | - | chr5.4:9258500-9258519 | MS.gene015248:CDS | 45.0% | |
GAGTTGTTTAGGTCCTTTGG+AGG | + | chr5.4:9259225-9259244 | None:intergenic | 45.0% | |
GATTGAGCAAGCTGCATAAC+TGG | + | chr5.4:9258963-9258982 | None:intergenic | 45.0% | |
GCAGTCCAGCAAATCAAAGT+TGG | + | chr5.4:9258092-9258111 | None:intergenic | 45.0% | |
GCCGTTAAGTGTGATATAGG+AGG | + | chr5.4:9259122-9259141 | None:intergenic | 45.0% | |
GGAAATTGGAAGCCATTGTG+AGG | + | chr5.4:9258027-9258046 | None:intergenic | 45.0% | |
GGACACTGTTGAGAAGACTA+AGG | - | chr5.4:9259271-9259290 | MS.gene015248:intron | 45.0% | |
GTGTCCAACAGAGTAGTTGT+TGG | + | chr5.4:9258300-9258319 | None:intergenic | 45.0% | |
GTTCTGCAGAAAGTCTCCTT+CGG | - | chr5.4:9258267-9258286 | MS.gene015248:intron | 45.0% | |
GTTCTTCCATCGTAAGGACA+TGG | - | chr5.4:9258197-9258216 | MS.gene015248:intron | 45.0% | |
TAAGGTAGGAGAACCTCTTG+TGG | - | chr5.4:9258476-9258495 | MS.gene015248:CDS | 45.0% | |
TACTGTCAGCTCATGATTGG+AGG | - | chr5.4:9257698-9257717 | MS.gene015248:intron | 45.0% | |
TCAATCATGCTCAGTTTGGC+CGG | - | chr5.4:9258796-9258815 | MS.gene015248:CDS | 45.0% | |
TCTCAACGATGGCAAGGTTA+TGG | - | chr5.4:9260213-9260232 | MS.gene015248:CDS | 45.0% | |
TGGATCAGTGATGCATGGTA+GGG | - | chr5.4:9257445-9257464 | MS.gene015248:CDS | 45.0% | |
TGTTATGTTTGCGGCAGGTT+GGG | - | chr5.4:9258573-9258592 | MS.gene015248:CDS | 45.0% | |
TGTTGAAGAAGGCAAGCGTT+GGG | - | chr5.4:9258638-9258657 | MS.gene015248:CDS | 45.0% | |
TTGCATCCGGTTTATAGGTC+CGG | + | chr5.4:9259507-9259526 | None:intergenic | 45.0% | |
TTGTGCAGCTGAAAGTGATG+AGG | - | chr5.4:9259001-9259020 | MS.gene015248:CDS | 45.0% | |
! | AATAATGTAATGGCGGGACC+TGG | - | chr5.4:9259389-9259408 | MS.gene015248:CDS | 45.0% |
! | ATGCAGCTTGCTCAATCTCA+TGG | - | chr5.4:9258966-9258985 | MS.gene015248:CDS | 45.0% |
! | CACGATTGGTTCAAGAAGCT+AGG | - | chr5.4:9259033-9259052 | MS.gene015248:CDS | 45.0% |
! | CTCTGTGTTGCTCTTAAGGT+AGG | - | chr5.4:9258462-9258481 | MS.gene015248:CDS | 45.0% |
! | CTTATATGGTGGAACTGTCG+GGG | - | chr5.4:9259439-9259458 | MS.gene015248:CDS | 45.0% |
! | GAGGTGGTTTGGCATGTTTA+TGG | - | chr5.4:9259626-9259645 | MS.gene015248:CDS | 45.0% |
! | GGAGCACTTTCAATTGAGAG+AGG | + | chr5.4:9259068-9259087 | None:intergenic | 45.0% |
! | GGAGCAGTGTTACGAGTTTT+TGG | + | chr5.4:9258942-9258961 | None:intergenic | 45.0% |
! | GGCTAGTTGAACCTGAGTTT+AGG | - | chr5.4:9260181-9260200 | MS.gene015248:CDS | 45.0% |
! | GGCTCTAATGATTCTGATGG+TGG | - | chr5.4:9259311-9259330 | MS.gene015248:CDS | 45.0% |
! | GGGAGTCTTTTGATCCAACA+AGG | - | chr5.4:9258883-9258902 | MS.gene015248:CDS | 45.0% |
! | GGTCGTTTGTTTCTCAACGA+TGG | - | chr5.4:9260202-9260221 | MS.gene015248:CDS | 45.0% |
!! | GAATCAATGGGCTGTCTTCT+CGG | - | chr5.4:9258369-9258388 | MS.gene015248:CDS | 45.0% |
!! | TAGAGGTATCCACATGGGAA+CGG | + | chr5.4:9260359-9260378 | None:intergenic | 45.0% |
!! | TGATTTGCTGGACTGCTGTT+TGG | - | chr5.4:9258096-9258115 | MS.gene015248:intron | 45.0% |
!! | TGTTTCTGGAAGCAACCTTC+AGG | - | chr5.4:9257565-9257584 | MS.gene015248:CDS | 45.0% |
!! | TTGGTGTTACGCTCTCTGTT+TGG | - | chr5.4:9257162-9257181 | MS.gene015248:CDS | 45.0% |
!!! | CGAGTTTTTGGAACCACTTG+CGG | + | chr5.4:9258930-9258949 | None:intergenic | 45.0% |
!!! | CGGAGCCTTTTGAGTTGTTT+AGG | + | chr5.4:9259236-9259255 | None:intergenic | 45.0% |
!!! | GGGCTTTTTGGTTCAACAGA+AGG | - | chr5.4:9257880-9257899 | MS.gene015248:intron | 45.0% |
AAGCGACATTGACCGGAACT+AGG | + | chr5.4:9260144-9260163 | None:intergenic | 50.0% | |
AATCCCTCCCAATCTTCACC+CGG | + | chr5.4:9258818-9258837 | None:intergenic | 50.0% | |
ACAACTCAAAAGGCTCCGCA+TGG | - | chr5.4:9259238-9259257 | MS.gene015248:intron | 50.0% | |
ACATGATGAGCAAGGAGGGA+TGG | - | chr5.4:9257256-9257275 | MS.gene015248:CDS | 50.0% | |
AGAACCTCTTGTGGCGAGTT+GGG | - | chr5.4:9258485-9258504 | MS.gene015248:CDS | 50.0% | |
AGCAATGGTGCGATGCATGA+TGG | - | chr5.4:9258750-9258769 | MS.gene015248:CDS | 50.0% | |
AGGGGAAGATGGAGGTTAAC+TGG | - | chr5.4:9259721-9259740 | MS.gene015248:CDS | 50.0% | |
AGTTTGGCCGGGTGAAGATT+GGG | - | chr5.4:9258808-9258827 | MS.gene015248:CDS | 50.0% | |
ATGACTCGTTGAGGGGAAGA+TGG | - | chr5.4:9259710-9259729 | MS.gene015248:CDS | 50.0% | |
ATGAGGGATAGGGGACTATG+TGG | - | chr5.4:9259362-9259381 | MS.gene015248:CDS | 50.0% | |
ATTTGCAGGAGCAGACCGAT+TGG | + | chr5.4:9258068-9258087 | None:intergenic | 50.0% | |
CAATCATGCTCAGTTTGGCC+GGG | - | chr5.4:9258797-9258816 | MS.gene015248:CDS | 50.0% | |
CAGCATCCAAAACAGCTTGC+CGG | + | chr5.4:9259918-9259937 | None:intergenic | 50.0% | |
CCTAGTCCGGACCTATAAAC+CGG | - | chr5.4:9259498-9259517 | MS.gene015248:intron | 50.0% | |
CGACCCAACAACTACTCTGT+TGG | - | chr5.4:9258293-9258312 | MS.gene015248:intron | 50.0% | |
CGTCAACCGTGGCTTATTCA+AGG | - | chr5.4:9259889-9259908 | MS.gene015248:intron | 50.0% | |
CTGGATCAGTGATGCATGGT+AGG | - | chr5.4:9257444-9257463 | MS.gene015248:CDS | 50.0% | |
CTGTTATGTTTGCGGCAGGT+TGG | - | chr5.4:9258572-9258591 | MS.gene015248:CDS | 50.0% | |
GAATTCAAGGGCAGCAGTAC+CGG | - | chr5.4:9258678-9258697 | MS.gene015248:CDS | 50.0% | |
GGTGAAGATTGGGAGGGATT+TGG | - | chr5.4:9258818-9258837 | MS.gene015248:CDS | 50.0% | |
TATTGGTAGGGGAGGTGGTT+TGG | - | chr5.4:9259615-9259634 | MS.gene015248:CDS | 50.0% | |
TCCTTGCATAGCACGCTTCT+TGG | - | chr5.4:9257493-9257512 | MS.gene015248:CDS | 50.0% | |
TCGCGCTGTGGAAGAGAAAT+TGG | - | chr5.4:9259999-9260018 | MS.gene015248:intron | 50.0% | |
TGAAGCTATCCGTTCCCATG+TGG | - | chr5.4:9260347-9260366 | MS.gene015248:CDS | 50.0% | |
TGAGGAACGCATTGCACGAT+TGG | - | chr5.4:9259019-9259038 | MS.gene015248:CDS | 50.0% | |
TGAGGGATAGGGGACTATGT+GGG | - | chr5.4:9259363-9259382 | MS.gene015248:CDS | 50.0% | |
TGGCAGTAGTGTTGTCAGCA+TGG | + | chr5.4:9258048-9258067 | None:intergenic | 50.0% | |
TGGTCAAGATACGGCTAGCA+AGG | - | chr5.4:9259331-9259350 | MS.gene015248:CDS | 50.0% | |
TGTCCTCGAGTTCTTCCATG+CGG | + | chr5.4:9259256-9259275 | None:intergenic | 50.0% | |
TTGGCGCATATGCTGAAGGT+TGG | - | chr5.4:9259146-9259165 | MS.gene015248:CDS | 50.0% | |
! | AAGAGTGGTGGTGAGAGCAA+TGG | - | chr5.4:9258735-9258754 | MS.gene015248:CDS | 50.0% |
! | AGGATTCCGGCAAGCTGTTT+TGG | - | chr5.4:9259909-9259928 | MS.gene015248:intron | 50.0% |
! | CCATTGATTGTCAACCCCTC+CGG | + | chr5.4:9258700-9258719 | None:intergenic | 50.0% |
! | GCGTCTCTGTGTTGCTCTTA+AGG | - | chr5.4:9258458-9258477 | MS.gene015248:CDS | 50.0% |
! | GTTGAAGAAGGCAAGCGTTG+GGG | - | chr5.4:9258639-9258658 | MS.gene015248:CDS | 50.0% |
! | GTTGATCGTATTGGTAGGGG+AGG | - | chr5.4:9259607-9259626 | MS.gene015248:CDS | 50.0% |
! | TCGGATTAGGCATCCCACTT+AGG | + | chr5.4:9259172-9259191 | None:intergenic | 50.0% |
! | TGGAGAAAGTGTACCGCAAG+TGG | - | chr5.4:9258914-9258933 | MS.gene015248:CDS | 50.0% |
! | TTGCTGGACTGCTGTTTGGT+GGG | - | chr5.4:9258100-9258119 | MS.gene015248:intron | 50.0% |
! | TTTGCTGGACTGCTGTTTGG+TGG | - | chr5.4:9258099-9258118 | MS.gene015248:intron | 50.0% |
!! | ATGCTGAAGGTTGGCCTAAG+TGG | - | chr5.4:9259155-9259174 | MS.gene015248:CDS | 50.0% |
!! | GCTTTCGCTTTGAGAATGCG+TGG | - | chr5.4:9260160-9260179 | MS.gene015248:CDS | 50.0% |
!! | GTGTGATCCGTACTGGTTCT+TGG | - | chr5.4:9258223-9258242 | MS.gene015248:intron | 50.0% |
!! | TGCTGAAGGTTGGCCTAAGT+GGG | - | chr5.4:9259156-9259175 | MS.gene015248:CDS | 50.0% |
AAGGTGCGTACGGTCTCATG+TGG | - | chr5.4:9257389-9257408 | MS.gene015248:CDS | 55.0% | |
AATGCCCAACTCGCCACAAG+AGG | + | chr5.4:9258492-9258511 | None:intergenic | 55.0% | |
ACTCGTTGAGGGGAAGATGG+AGG | - | chr5.4:9259713-9259732 | MS.gene015248:CDS | 55.0% | |
AGCAAGGAGGGATGGCAGTT+TGG | - | chr5.4:9257264-9257283 | MS.gene015248:CDS | 55.0% | |
AGTTGTTGGGTCGTCACCGA+AGG | + | chr5.4:9258286-9258305 | None:intergenic | 55.0% | |
ATGGAGCGTGTGATCCGTAC+TGG | - | chr5.4:9258216-9258235 | MS.gene015248:intron | 55.0% | |
ATGGTATGCCAGAAGGAGGG+AGG | - | chr5.4:9259749-9259768 | MS.gene015248:CDS | 55.0% | |
CAAGGAGGGATGGCAGTTTG+GGG | - | chr5.4:9257266-9257285 | MS.gene015248:CDS | 55.0% | |
CACGCTCCATGTCCTTACGA+TGG | + | chr5.4:9258206-9258225 | None:intergenic | 55.0% | |
CAGTTTGGCCGGGTGAAGAT+TGG | - | chr5.4:9258807-9258826 | MS.gene015248:CDS | 55.0% | |
CATTGACCGGAACTAGGCAC+AGG | + | chr5.4:9260138-9260157 | None:intergenic | 55.0% | |
CCGGAGGGGTTGACAATCAA+TGG | - | chr5.4:9258697-9258716 | MS.gene015248:CDS | 55.0% | |
CCGGTTTATAGGTCCGGACT+AGG | + | chr5.4:9259501-9259520 | None:intergenic | 55.0% | |
GAGAACCTCTTGTGGCGAGT+TGG | - | chr5.4:9258484-9258503 | MS.gene015248:CDS | 55.0% | |
GAGGGAGGAGAAGAGAGTCT+TGG | - | chr5.4:9259764-9259783 | MS.gene015248:CDS | 55.0% | |
GCAAGGAGGGATGGCAGTTT+GGG | - | chr5.4:9257265-9257284 | MS.gene015248:CDS | 55.0% | |
GCATGATGGCATGGGTCTAG+TGG | - | chr5.4:9258764-9258783 | MS.gene015248:CDS | 55.0% | |
GCGTACGGTCTCATGTGGTA+TGG | - | chr5.4:9257394-9257413 | MS.gene015248:CDS | 55.0% | |
GGTGCGATGCATGATGGCAT+GGG | - | chr5.4:9258756-9258775 | MS.gene015248:CDS | 55.0% | |
GTAGGTCTGATCGTCAACCG+TGG | - | chr5.4:9259878-9259897 | MS.gene015248:intron | 55.0% | |
TCTCTTCTCCTCCCTCCTTC+TGG | + | chr5.4:9259760-9259779 | None:intergenic | 55.0% | |
TCTTGGAACTGTTCGCGCTG+TGG | - | chr5.4:9259987-9260006 | MS.gene015248:intron | 55.0% | |
TGATATAGGAGGCTGGGCAG+CGG | + | chr5.4:9259111-9259130 | None:intergenic | 55.0% | |
TGGTGCGATGCATGATGGCA+TGG | - | chr5.4:9258755-9258774 | MS.gene015248:CDS | 55.0% | |
TGGTGGAACTGTCGGGGTTT+AGG | - | chr5.4:9259445-9259464 | MS.gene015248:CDS | 55.0% | |
! | GATCGTATTGGTAGGGGAGG+TGG | - | chr5.4:9259610-9259629 | MS.gene015248:CDS | 55.0% |
! | GCCAAGAAGCGTGCTATGCA+AGG | + | chr5.4:9257497-9257516 | None:intergenic | 55.0% |
!! | CGGCAAGCTGTTTTGGATGC+TGG | - | chr5.4:9259916-9259935 | MS.gene015248:intron | 55.0% |
!! | GAAAGTGCTCCGTCCGATGT+TGG | - | chr5.4:9259077-9259096 | MS.gene015248:CDS | 55.0% |
CCGCAACCTGTGCCTAGTTC+CGG | - | chr5.4:9260129-9260148 | MS.gene015248:CDS | 60.0% | |
CCGGAACTAGGCACAGGTTG+CGG | + | chr5.4:9260132-9260151 | None:intergenic | 60.0% | |
GCTCCGCATGGAAGAACTCG+AGG | - | chr5.4:9259250-9259269 | MS.gene015248:intron | 60.0% | |
GGATGGCAGTTTGGGGAAGC+AGG | - | chr5.4:9257273-9257292 | MS.gene015248:CDS | 60.0% | |
TGGCAGTTTGGGGAAGCAGG+AGG | - | chr5.4:9257276-9257295 | MS.gene015248:CDS | 60.0% | |
TGGCCGGGTGAAGATTGGGA+GGG | - | chr5.4:9258812-9258831 | MS.gene015248:CDS | 60.0% | |
TGTCTTCTCGGCAGTCGCGT+TGG | - | chr5.4:9258381-9258400 | MS.gene015248:CDS | 60.0% | |
TTGGCCGGGTGAAGATTGGG+AGG | - | chr5.4:9258811-9258830 | MS.gene015248:CDS | 60.0% | |
! | TCAAGGGCAGCAGTACCGGA+GGG | - | chr5.4:9258682-9258701 | MS.gene015248:CDS | 60.0% |
! | TGGACTGCTGTTTGGTGGGC+AGG | - | chr5.4:9258104-9258123 | MS.gene015248:intron | 60.0% |
! | TTCAAGGGCAGCAGTACCGG+AGG | - | chr5.4:9258681-9258700 | MS.gene015248:CDS | 60.0% |
! | TTCTGGTGCTTGCTGCCGCA+TGG | + | chr5.4:9260505-9260524 | None:intergenic | 60.0% |
!! | CTCATTTTCCTTGGCGGGCC+TGG | + | chr5.4:9259418-9259437 | None:intergenic | 60.0% |
CTTCTCGGCAGTCGCGTTGG+TGG | - | chr5.4:9258384-9258403 | MS.gene015248:CDS | 65.0% | |
! | AATGGCGGGACCTGGACACC+AGG | - | chr5.4:9259397-9259416 | MS.gene015248:CDS | 65.0% |
! | CAAGGGCAGCAGTACCGGAG+GGG | - | chr5.4:9258683-9258702 | MS.gene015248:CDS | 65.0% |
CCTGGACACCAGGCCCGCCA+AGG | - | chr5.4:9259407-9259426 | MS.gene015248:CDS | 75.0% | |
! | CCTTGGCGGGCCTGGTGTCC+AGG | + | chr5.4:9259410-9259429 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 9257158 | 9260533 | 9257158 | ID=MS.gene015248 |
chr5.4 | mRNA | 9257158 | 9260533 | 9257158 | ID=MS.gene015248.t1;Parent=MS.gene015248 |
chr5.4 | exon | 9260105 | 9260533 | 9260105 | ID=MS.gene015248.t1.exon1;Parent=MS.gene015248.t1 |
chr5.4 | CDS | 9260105 | 9260533 | 9260105 | ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1 |
chr5.4 | exon | 9259574 | 9259792 | 9259574 | ID=MS.gene015248.t1.exon2;Parent=MS.gene015248.t1 |
chr5.4 | CDS | 9259574 | 9259792 | 9259574 | ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1 |
chr5.4 | exon | 9259293 | 9259493 | 9259293 | ID=MS.gene015248.t1.exon3;Parent=MS.gene015248.t1 |
chr5.4 | CDS | 9259293 | 9259493 | 9259293 | ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1 |
chr5.4 | exon | 9258336 | 9259211 | 9258336 | ID=MS.gene015248.t1.exon4;Parent=MS.gene015248.t1 |
chr5.4 | CDS | 9258336 | 9259211 | 9258336 | ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1 |
chr5.4 | exon | 9257158 | 9257628 | 9257158 | ID=MS.gene015248.t1.exon5;Parent=MS.gene015248.t1 |
chr5.4 | CDS | 9257158 | 9257628 | 9257158 | ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1 |
Gene Sequence |
Protein sequence |