AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015248


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015248.t1 MTR_2g055450 66.981 106 20 1 577 682 246 336 8.16e-36 140
MS.gene015248.t1 MTR_8g463110 39.310 145 88 0 576 720 189 333 2.56e-28 121
MS.gene015248.t1 MTR_4g020630 37.500 152 95 0 570 721 119 270 3.26e-27 116
MS.gene015248.t1 MTR_0042s0130 48.673 113 58 0 576 688 228 340 3.82e-27 113
MS.gene015248.t1 MTR_1g051330 38.889 126 74 2 576 700 344 467 1.27e-20 97.4
MS.gene015248.t1 MTR_6g034215 35.714 126 81 0 582 707 199 324 1.65e-20 93.6
MS.gene015248.t1 MTR_1g100687 36.792 106 66 1 576 680 127 232 7.77e-17 80.9
MS.gene015248.t1 MTR_6g033215 31.967 122 56 1 217 311 172 293 9.31e-16 79.0
MS.gene015248.t1 MTR_4g020545 28.402 169 93 5 215 383 93 233 6.18e-14 73.6
MS.gene015248.t1 MTR_0010s0370 38.889 72 44 0 217 288 77 148 2.55e-12 66.6
MS.gene015248.t1 MTR_0010s0350 38.889 72 44 0 217 288 77 148 2.55e-12 66.6
MS.gene015248.t1 MTR_4g103530 40.580 69 37 1 217 281 25 93 4.44e-12 66.2
MS.gene015248.t1 MTR_5g085210 48.214 56 29 0 666 721 5 60 1.79e-11 65.1
MS.gene015248.t1 MTR_3g053920 51.852 54 26 0 217 270 79 132 3.00e-11 65.5
MS.gene015248.t1 MTR_2g063055 34.343 99 61 3 625 721 68 164 4.03e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015248.t1 AT3G42140 31.579 114 71 2 216 329 65 171 4.56e-11 64.7

Find 183 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATCTTTCTTCAGGTTTC+AGG 0.118165 5.4:-9260327 MS.gene015248:CDS
TCAGCTGCACAAATACTTTC+TGG 0.213335 5.4:+9258679 None:intergenic
AATATATATCTAGATGTTTC+TGG 0.233510 5.4:-9260118 MS.gene015248:CDS
TTGCAGTATTCTTGCACTTA+AGG 0.275675 5.4:-9260356 MS.gene015248:CDS
GAATCTCTTGTCTGGTGTTT+TGG 0.285750 5.4:+9257364 None:intergenic
GCATGGAAAACTTCGTATTA+AGG 0.287571 5.4:+9257184 None:intergenic
GCAAGGAGGGATGGCAGTTT+GGG 0.288926 5.4:-9260404 MS.gene015248:CDS
AGCAAGGAGGGATGGCAGTT+TGG 0.292251 5.4:-9260405 MS.gene015248:CDS
TGGCAGATTACTGCAAGTTT+TGG 0.293942 5.4:-9260156 MS.gene015248:CDS
TTTGAGTTGTTTAGGTCCTT+TGG 0.294934 5.4:+9258444 None:intergenic
TATTCTTGCACTTAAGGATA+TGG 0.305828 5.4:-9260350 MS.gene015248:CDS
GATATGGCTAATCTTTCTTC+AGG 0.313274 5.4:-9260334 MS.gene015248:CDS
AATTCTATTCAACTTTCTTC+TGG 0.322665 5.4:+9257150 None:intergenic
CAGTTTGGCCGGGTGAAGAT+TGG 0.329897 5.4:-9258862 MS.gene015248:CDS
AAATTCCAACTTTGATTTGC+TGG 0.332555 5.4:-9259585 MS.gene015248:CDS
CATTGTGAGGTAATCGTAAA+AGG 0.332606 5.4:+9259658 None:intergenic
GGTGAAGATTGGGAGGGATT+TGG 0.335441 5.4:-9258851 MS.gene015248:CDS
TCCTTGCATAGCACGCTTCT+TGG 0.336551 5.4:-9260176 MS.gene015248:CDS
AACAACGTGCTAAGAAGTTT+TGG 0.339812 5.4:-9257221 MS.gene015248:CDS
GATTGAGCAAGCTGCATAAC+TGG 0.346165 5.4:+9258709 None:intergenic
GATCCAACAAGGTGTTTGTT+TGG 0.349383 5.4:-9258775 MS.gene015248:CDS
GTGTGATCCGTACTGGTTCT+TGG 0.349579 5.4:-9259446 MS.gene015248:CDS
TGATTTGCTGGACTGCTGTT+TGG 0.352328 5.4:-9259573 MS.gene015248:intron
TCTCATCAGAAGGATCATTC+TGG 0.360305 5.4:-9260244 MS.gene015248:CDS
TCTCAACGATGGCAAGGTTA+TGG 0.362232 5.4:-9257456 MS.gene015248:CDS
CTGTTATGTTTGCGGCAGGT+TGG 0.364300 5.4:-9259097 MS.gene015248:CDS
TCTCCAAACAAACACCTTGT+TGG 0.366311 5.4:+9258772 None:intergenic
CAAGCTCACAATCTTCCATT+TGG 0.366426 5.4:-9259333 MS.gene015248:CDS
AAATCAAAGTTGGAATTTGC+AGG 0.375102 5.4:+9259590 None:intergenic
GTGTTGTGGATCTATCTAAA+TGG 0.384569 5.4:-9257401 MS.gene015248:CDS
TGTTTCTGGAAGCAACCTTC+AGG 0.391835 5.4:-9260104 MS.gene015248:intron
TCTTTCAATCATGCTCAGTT+TGG 0.393491 5.4:-9258877 MS.gene015248:CDS
CCGCAACCTGTGCCTAGTTC+CGG 0.393754 5.4:-9257540 MS.gene015248:CDS
GATAATTTCTGTTATGTTTG+CGG 0.400723 5.4:-9259105 MS.gene015248:CDS
TGGTTTCATGACAGAATCAA+TGG 0.401097 5.4:-9259313 MS.gene015248:CDS
GAATCAATGGGCTGTCTTCT+CGG 0.402548 5.4:-9259300 MS.gene015248:CDS
GCCTCCTATATCACACTTAA+CGG 0.404305 5.4:-9258551 MS.gene015248:CDS
TGTTATGTTTGCGGCAGGTT+GGG 0.409593 5.4:-9259096 MS.gene015248:CDS
TCAATCATGCTCAGTTTGGC+CGG 0.410305 5.4:-9258873 MS.gene015248:CDS
AGTGTTGTCAGCATGGAAAT+TGG 0.417558 5.4:+9259631 None:intergenic
ATCACACTTAACGGCATCAT+TGG 0.420382 5.4:-9258542 MS.gene015248:CDS
TTAAGCTTGTGAATGGTACT+TGG 0.421722 5.4:-9258807 MS.gene015248:CDS
TATTCTTCGTGCTGAATTCA+AGG 0.423524 5.4:-9259004 MS.gene015248:CDS
GTTAAAATAACTAACATTAG+AGG 0.423719 5.4:+9257296 None:intergenic
GATGCCGTTAAGTGTGATAT+AGG 0.424134 5.4:+9258547 None:intergenic
AGAACCTCTTGTGGCGAGTT+GGG 0.425908 5.4:-9259184 MS.gene015248:CDS
TCATCACTAACTGTCGGATT+AGG 0.434896 5.4:+9258487 None:intergenic
TGTTGAAGAAGGCAAGCGTT+GGG 0.435153 5.4:-9259031 MS.gene015248:CDS
GGATGGCAGTTTGGGGAAGC+AGG 0.438798 5.4:-9260396 MS.gene015248:CDS
AGTTTGGCCGGGTGAAGATT+GGG 0.444737 5.4:-9258861 MS.gene015248:CDS
GAAGACAATTATGTTGAAGA+AGG 0.444839 5.4:-9259042 MS.gene015248:CDS
AAAGCGAAAGCGACATTGAC+CGG 0.451446 5.4:+9257521 None:intergenic
TAACATGTTAAGACATAGGT+TGG 0.453146 5.4:-9257277 MS.gene015248:CDS
TAGTGATTGTTTCGAATGAT+TGG 0.456799 5.4:-9260526 None:intergenic
ATGCTGAAGGTTGGCCTAAG+TGG 0.459601 5.4:-9258514 MS.gene015248:CDS
TTCTGGTGCTTGCTGCCGCA+TGG 0.460411 5.4:+9257167 None:intergenic
GGCTAGTTGAACCTGAGTTT+AGG 0.461625 5.4:-9257488 MS.gene015248:CDS
AGTCTTACGAATCTCTTGTC+TGG 0.465492 5.4:+9257356 None:intergenic
TGAGGAACGCATTGCACGAT+TGG 0.468509 5.4:-9258650 MS.gene015248:CDS
GAATTCAAGGGCAGCAGTAC+CGG 0.468900 5.4:-9258991 MS.gene015248:CDS
ATAAATATCATTCAGTATCA+AGG 0.473958 5.4:-9259740 MS.gene015248:CDS
TGATCAAAGATGATATGTTC+TGG 0.475541 5.4:-9257245 MS.gene015248:CDS
TTGAATTCAGCACGAAGAAT+AGG 0.480103 5.4:+9259006 None:intergenic
TTGGTGTTACGCTCTCTGTT+TGG 0.485697 5.4:-9260507 MS.gene015248:CDS
CCGGAGGGGTTGACAATCAA+TGG 0.488317 5.4:-9258972 MS.gene015248:CDS
CTGGATCAGTGATGCATGGT+AGG 0.490003 5.4:-9260225 MS.gene015248:CDS
GATTCTGTCATGAAACCAAA+TGG 0.491687 5.4:+9259318 None:intergenic
GAGTTGTTTAGGTCCTTTGG+AGG 0.492404 5.4:+9258447 None:intergenic
CAATCATGCTCAGTTTGGCC+GGG 0.496015 5.4:-9258872 MS.gene015248:CDS
AGGGTAGTGATCAGAAGATG+TGG 0.496508 5.4:+9257581 None:intergenic
GTTTCAGTTCTTCCATCGTA+AGG 0.498528 5.4:-9259478 MS.gene015248:intron
CGACCCAACAACTACTCTGT+TGG 0.503641 5.4:-9259376 MS.gene015248:CDS
GCAGTCCAGCAAATCAAAGT+TGG 0.506257 5.4:+9259580 None:intergenic
ATTTCTGTTATGTTTGCGGC+AGG 0.508708 5.4:-9259101 MS.gene015248:CDS
GGTGTTTGTTTCTCATCAGA+AGG 0.511185 5.4:-9260254 MS.gene015248:CDS
GGTTTCATGACAGAATCAAT+GGG 0.515352 5.4:-9259312 MS.gene015248:CDS
TGTCCAACAGAGTAGTTGTT+GGG 0.515953 5.4:+9259373 None:intergenic
TGGTGCGATGCATGATGGCA+TGG 0.518435 5.4:-9258914 MS.gene015248:CDS
ATGGAGCGTGTGATCCGTAC+TGG 0.518491 5.4:-9259453 MS.gene015248:CDS
CCATTGATTGTCAACCCCTC+CGG 0.524266 5.4:+9258972 None:intergenic
AAGGACCTAAACAACTCAAA+AGG 0.526078 5.4:-9258441 MS.gene015248:CDS
TCATAATGATAGCTATTGTC+CGG 0.526404 5.4:-9259073 MS.gene015248:CDS
GAGAACCTCTTGTGGCGAGT+TGG 0.526455 5.4:-9259185 MS.gene015248:CDS
TACTAGTCATAAGGTGCGTA+CGG 0.533773 5.4:-9260290 MS.gene015248:CDS
TAAGCTTGTGAATGGTACTT+GGG 0.533951 5.4:-9258806 MS.gene015248:CDS
TTCTGATGGTGGTCAAGATA+CGG 0.534188 5.4:-9258347 MS.gene015248:CDS
GTGTCCAACAGAGTAGTTGT+TGG 0.535599 5.4:+9259372 None:intergenic
AAGCGACATTGACCGGAACT+AGG 0.537113 5.4:+9257528 None:intergenic
TTAAGTGTGATATAGGAGGC+TGG 0.537612 5.4:+9258554 None:intergenic
ATCAATGGCTTCATGATAGT+AGG 0.538858 5.4:-9258957 MS.gene015248:CDS
AATCCGACAGTTAGTGATGA+TGG 0.542371 5.4:-9258484 MS.gene015248:CDS
AAGGAAGGTGTTAAGATGAA+AGG 0.548628 5.4:-9258379 MS.gene015248:CDS
GCCAAGAAGCGTGCTATGCA+AGG 0.549192 5.4:+9260175 None:intergenic
TGCAATTTGATTGAATGTGA+AGG 0.551860 5.4:+9259714 None:intergenic
GGTAATCGTAAAAGGTATGA+AGG 0.554633 5.4:+9259666 None:intergenic
GAAAGTGCTCCGTCCGATGT+TGG 0.555466 5.4:-9258592 MS.gene015248:CDS
TAATTGTCTTCATAACGATC+CGG 0.556135 5.4:+9259054 None:intergenic
CCGGAACTAGGCACAGGTTG+CGG 0.558797 5.4:+9257540 None:intergenic
ATGTTGAAGAAGGCAAGCGT+TGG 0.560092 5.4:-9259032 MS.gene015248:CDS
GTTCTGCAGAAAGTCTCCTT+CGG 0.562217 5.4:-9259402 MS.gene015248:CDS
CTGACAACACTACTGCCAAT+CGG 0.562524 5.4:-9259619 MS.gene015248:CDS
TGATTGAGTTTATTCACAAG+AGG 0.564259 5.4:+9257426 None:intergenic
AGGAACATGATGAGCAAGGA+GGG 0.565067 5.4:-9260417 MS.gene015248:CDS
TGGCAGTAGTGTTGTCAGCA+TGG 0.565117 5.4:+9259624 None:intergenic
ATTTGCAGGAGCAGACCGAT+TGG 0.566589 5.4:+9259604 None:intergenic
ATGCAGCTTGCTCAATCTCA+TGG 0.570432 5.4:-9258703 MS.gene015248:CDS
GAGACTTTCTGCAGAACTAG+AGG 0.570603 5.4:+9259408 None:intergenic
GTTCTTCCATCGTAAGGACA+TGG 0.572999 5.4:-9259472 MS.gene015248:CDS
TAAGTGTGATATAGGAGGCT+GGG 0.573965 5.4:+9258555 None:intergenic
TGGAGAAAGTGTACCGCAAG+TGG 0.574007 5.4:-9258755 MS.gene015248:CDS
CAAAGAGCCAAGAACCAGTA+CGG 0.576391 5.4:+9259439 None:intergenic
ACATGATGAGCAAGGAGGGA+TGG 0.576695 5.4:-9260413 MS.gene015248:CDS
GCGTACGGTCTCATGTGGTA+TGG 0.576892 5.4:-9260275 MS.gene015248:CDS
CACGATTGGTTCAAGAAGCT+AGG 0.577031 5.4:-9258636 MS.gene015248:CDS
TTTGTTTCTCAACGATGGCA+AGG 0.577495 5.4:-9257462 MS.gene015248:CDS
TCGGATTAGGCATCCCACTT+AGG 0.581025 5.4:+9258500 None:intergenic
TGGTCAAGATACGGCTAGCA+AGG 0.581487 5.4:-9258338 MS.gene015248:CDS
GGTCGTTTGTTTCTCAACGA+TGG 0.581511 5.4:-9257467 MS.gene015248:CDS
ATCATTGGCGCATATGCTGA+AGG 0.584783 5.4:-9258527 MS.gene015248:CDS
GGCTCTAATGATTCTGATGG+TGG 0.586250 5.4:-9258358 MS.gene015248:CDS
GGAGCACAATCTAACAAAAG+AGG 0.587191 5.4:+9257561 None:intergenic
TAAACTCAATCAATGTGTTG+TGG 0.587729 5.4:-9257415 MS.gene015248:CDS
TTCAAGGGCAGCAGTACCGG+AGG 0.590534 5.4:-9258988 MS.gene015248:CDS
AATGCCCAACTCGCCACAAG+AGG 0.591640 5.4:+9259180 None:intergenic
ACAACTCAAAAGGCTCCGCA+TGG 0.592337 5.4:-9258431 MS.gene015248:CDS
AGTTGTTGGGTCGTCACCGA+AGG 0.593580 5.4:+9259386 None:intergenic
TTGGCGCATATGCTGAAGGT+TGG 0.594650 5.4:-9258523 MS.gene015248:CDS
TGGCAGTTTGGGGAAGCAGG+AGG 0.595632 5.4:-9260393 MS.gene015248:CDS
TGATATAGGAGGCTGGGCAG+CGG 0.596815 5.4:+9258561 None:intergenic
ATTCTTCGTGCTGAATTCAA+GGG 0.599382 5.4:-9259003 MS.gene015248:CDS
GCATGATGGCATGGGTCTAG+TGG 0.599661 5.4:-9258905 MS.gene015248:CDS
TGGATCAGTGATGCATGGTA+GGG 0.601776 5.4:-9260224 MS.gene015248:CDS
GTGATGCTTTACCAACATGT+AGG 0.602333 5.4:-9260456 MS.gene015248:CDS
GTTGGACACAATTGAGATGT+GGG 0.604163 5.4:-9259358 MS.gene015248:CDS
GGAGCACTTTCAATTGAGAG+AGG 0.605273 5.4:+9258604 None:intergenic
AGACTTTCTGCAGAACTAGA+GGG 0.607559 5.4:+9259409 None:intergenic
GGACACTGTTGAGAAGACTA+AGG 0.607998 5.4:-9258398 MS.gene015248:CDS
CATTGACCGGAACTAGGCAC+AGG 0.609205 5.4:+9257534 None:intergenic
GAGCACAATCTAACAAAAGA+GGG 0.611142 5.4:+9257562 None:intergenic
AAAGGCTCTAATGATTCTGA+TGG 0.611789 5.4:-9258361 MS.gene015248:CDS
CAAGGAGGGATGGCAGTTTG+GGG 0.612120 5.4:-9260403 MS.gene015248:CDS
GGTGCGATGCATGATGGCAT+GGG 0.614147 5.4:-9258913 MS.gene015248:CDS
TGCTGAAGGTTGGCCTAAGT+GGG 0.618386 5.4:-9258513 MS.gene015248:CDS
TTGGCCGGGTGAAGATTGGG+AGG 0.623223 5.4:-9258858 MS.gene015248:CDS
GAGTTGGGCATTTGAAAGAG+AGG 0.624526 5.4:-9259169 MS.gene015248:CDS
ACAGTTAAGATTACCTCCAA+AGG 0.624589 5.4:-9258460 MS.gene015248:CDS
GTTGAAGAAGGCAAGCGTTG+GGG 0.624795 5.4:-9259030 MS.gene015248:CDS
TAGAGGTATCCACATGGGAA+CGG 0.624876 5.4:+9257313 None:intergenic
AGCAATGGTGCGATGCATGA+TGG 0.624888 5.4:-9258919 MS.gene015248:CDS
GTACCATCATCACTAACTGT+CGG 0.626401 5.4:+9258481 None:intergenic
TTAAGTGCAAGAATACTGCA+AGG 0.627344 5.4:+9260358 None:intergenic
CTTCATGATAGTAGGAAGAG+TGG 0.630322 5.4:-9258949 MS.gene015248:CDS
TGTTGGACACAATTGAGATG+TGG 0.631969 5.4:-9259359 MS.gene015248:CDS
CATTCTGGATCAGTGATGCA+TGG 0.636659 5.4:-9260229 MS.gene015248:CDS
AATCCCTCCCAATCTTCACC+CGG 0.637645 5.4:+9258854 None:intergenic
TAGGAGTATAGATGTTACAA+AGG 0.638418 5.4:-9260437 MS.gene015248:CDS
AGTTGGGCATTTGAAAGAGA+GGG 0.638703 5.4:-9259168 MS.gene015248:CDS
TAAGGTAGGAGAACCTCTTG+TGG 0.640323 5.4:-9259193 MS.gene015248:intron
TCAAGGGCAGCAGTACCGGA+GGG 0.642793 5.4:-9258987 MS.gene015248:CDS
CAGAGACGAGAAGAAAGTAA+CGG 0.643279 5.4:+9260478 None:intergenic
TGGCCGGGTGAAGATTGGGA+GGG 0.646391 5.4:-9258857 MS.gene015248:CDS
CACGCTCCATGTCCTTACGA+TGG 0.647172 5.4:+9259466 None:intergenic
ACAAAGGAACATGATGAGCA+AGG 0.647269 5.4:-9260421 MS.gene015248:CDS
ACTGTTGAGAAGACTAAGGA+AGG 0.648597 5.4:-9258394 MS.gene015248:CDS
CAAGGGCAGCAGTACCGGAG+GGG 0.649711 5.4:-9258986 MS.gene015248:CDS
GAAACAAACGACCTAAACTC+AGG 0.657149 5.4:+9257477 None:intergenic
ACATCTATACTCCTACATGT+TGG 0.657176 5.4:+9260445 None:intergenic
AAGGTGCGTACGGTCTCATG+TGG 0.658060 5.4:-9260280 MS.gene015248:CDS
GCTTTCGCTTTGAGAATGCG+TGG 0.659513 5.4:-9257509 MS.gene015248:CDS
AACATTAGAGGTATCCACAT+GGG 0.659561 5.4:+9257308 None:intergenic
GCTCCGCATGGAAGAACTCG+AGG 0.659574 5.4:-9258419 MS.gene015248:CDS
GGAAATTGGAAGCCATTGTG+AGG 0.668368 5.4:+9259645 None:intergenic
TAAGTGCAAGAATACTGCAA+GGG 0.673958 5.4:+9260359 None:intergenic
TGAAGCTATCCGTTCCCATG+TGG 0.674747 5.4:-9257322 MS.gene015248:CDS
CATGATAGTAGGAAGAGTGG+TGG 0.681655 5.4:-9258946 MS.gene015248:CDS
GCCGTTAAGTGTGATATAGG+AGG 0.683079 5.4:+9258550 None:intergenic
AAGAGTGGTGGTGAGAGCAA+TGG 0.684123 5.4:-9258934 MS.gene015248:CDS
GTATTAGAACCAACATCGGA+CGG 0.684945 5.4:+9258583 None:intergenic
AGCGGTATTAGAACCAACAT+CGG 0.697326 5.4:+9258579 None:intergenic
TTGTGCAGCTGAAAGTGATG+AGG 0.702639 5.4:-9258668 MS.gene015248:CDS
AAGGAACATGATGAGCAAGG+AGG 0.709557 5.4:-9260418 MS.gene015248:CDS
TAACATTAGAGGTATCCACA+TGG 0.718961 5.4:+9257307 None:intergenic
TGTCCTCGAGTTCTTCCATG+CGG 0.726264 5.4:+9258416 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGAATAAATAAATTTATG+AGG + chr5.4:9257602-9257621 None:intergenic 15.0%
!! ATTACAAAAATATGTTTCTT+TGG - chr5.4:9257780-9257799 MS.gene015248:intron 15.0%
!! TATTCTCTAAATATGTTTAT+TGG - chr5.4:9257614-9257633 MS.gene015248:intron 15.0%
!!! AACATCTAGATATATATTTT+TGG + chr5.4:9257549-9257568 None:intergenic 15.0%
!!! ATTGAATATCCAATATATTT+TGG + chr5.4:9257808-9257827 None:intergenic 15.0%
!!! TATATTTTCTTTTCATATCT+TGG - chr5.4:9257730-9257749 MS.gene015248:intron 15.0%
!!! TTGAATATCCAATATATTTT+GGG + chr5.4:9257807-9257826 None:intergenic 15.0%
!! AAATATACACCAAATAAACT+TGG + chr5.4:9257642-9257661 None:intergenic 20.0%
!! AATATATATCTAGATGTTTC+TGG - chr5.4:9257551-9257570 MS.gene015248:CDS 20.0%
!! ATAAATATCATTCAGTATCA+AGG - chr5.4:9257929-9257948 MS.gene015248:intron 20.0%
!! GTTAAAATAACTAACATTAG+AGG + chr5.4:9260376-9260395 None:intergenic 20.0%
!! TGAAGAATTGAAATATATGT+TGG - chr5.4:9259564-9259583 MS.gene015248:intron 20.0%
!!! AGAATAATTTTGATTCTTGA+AGG - chr5.4:9258427-9258446 MS.gene015248:CDS 20.0%
!!! ATTTTAACATGTTAAGACAT+AGG - chr5.4:9260388-9260407 MS.gene015248:CDS 20.0%
! ATGTGGGATTAATAATGTAA+TGG - chr5.4:9259379-9259398 MS.gene015248:CDS 25.0%
! CCAAAATCATATTGATATAG+AGG - chr5.4:9259684-9259703 MS.gene015248:CDS 25.0%
! GATAATTTCTGTTATGTTTG+CGG - chr5.4:9258564-9258583 MS.gene015248:CDS 25.0%
! TTATTGGATCCAAGTTTATT+TGG - chr5.4:9257630-9257649 MS.gene015248:intron 25.0%
! TTTAAATTAGGAACTATGCT+CGG + chr5.4:9259475-9259494 None:intergenic 25.0%
!! CCTCTATATCAATATGATTT+TGG + chr5.4:9259687-9259706 None:intergenic 25.0%
!!! ATTTGGTGTATATTTTTGAG+AGG - chr5.4:9257647-9257666 MS.gene015248:intron 25.0%
!!! ATTTGTTTGGTTTTTATTGC+TGG - chr5.4:9257853-9257872 MS.gene015248:intron 25.0%
!!! TATTTTTGAGAGGATATACT+TGG - chr5.4:9257657-9257676 MS.gene015248:intron 25.0%
AAATCAAAGTTGGAATTTGC+AGG + chr5.4:9258082-9258101 None:intergenic 30.0%
AAATCACCAATAATACACCA+AGG + chr5.4:9259826-9259845 None:intergenic 30.0%
CTTACTGATATTCATATGGA+TGG - chr5.4:9259940-9259959 MS.gene015248:intron 30.0%
GAAGACAATTATGTTGAAGA+AGG - chr5.4:9258627-9258646 MS.gene015248:CDS 30.0%
TAAACTCAATCAATGTGTTG+TGG - chr5.4:9260254-9260273 MS.gene015248:CDS 30.0%
TAACATGTTAAGACATAGGT+TGG - chr5.4:9260392-9260411 MS.gene015248:CDS 30.0%
TAATTGTCTTCATAACGATC+CGG + chr5.4:9258618-9258637 None:intergenic 30.0%
TATTCTTGCACTTAAGGATA+TGG - chr5.4:9257319-9257338 MS.gene015248:CDS 30.0%
TCATAATGATAGCTATTGTC+CGG - chr5.4:9258596-9258615 MS.gene015248:CDS 30.0%
TCTTTGGTCCCAAAATATAT+TGG - chr5.4:9257796-9257815 MS.gene015248:intron 30.0%
TGATCAAAGATGATATGTTC+TGG - chr5.4:9260424-9260443 MS.gene015248:CDS 30.0%
TGATTGAGTTTATTCACAAG+AGG + chr5.4:9260246-9260265 None:intergenic 30.0%
TGCAATTTGATTGAATGTGA+AGG + chr5.4:9257958-9257977 None:intergenic 30.0%
TGGACTTACTGATATTCATA+TGG - chr5.4:9259936-9259955 MS.gene015248:intron 30.0%
TGGGATTAATAATGTAATGG+CGG - chr5.4:9259382-9259401 MS.gene015248:CDS 30.0%
TTAAATTAGGAACTATGCTC+GGG + chr5.4:9259474-9259493 None:intergenic 30.0%
! CAAGGAAAATGAGTCTTATA+TGG - chr5.4:9259425-9259444 MS.gene015248:CDS 30.0%
! CATATAAGACTCATTTTCCT+TGG + chr5.4:9259427-9259446 None:intergenic 30.0%
! CTAATTTAAAGTACCTAGTC+CGG - chr5.4:9259485-9259504 MS.gene015248:intron 30.0%
! TAGGAGTATAGATGTTACAA+AGG - chr5.4:9257232-9257251 MS.gene015248:CDS 30.0%
! TGGTTTTTATTGCTGGATAT+GGG - chr5.4:9257860-9257879 MS.gene015248:intron 30.0%
! TGTTTTTCTGTTGATCGTAT+TGG - chr5.4:9259598-9259617 MS.gene015248:CDS 30.0%
! TTAATACGAAGTTTTCCATG+CGG - chr5.4:9260487-9260506 MS.gene015248:CDS 30.0%
! TTCGTAAAGCAAGATTTGTT+TGG - chr5.4:9257840-9257859 MS.gene015248:intron 30.0%
!! AAATTCCAACTTTGATTTGC+TGG - chr5.4:9258084-9258103 MS.gene015248:intron 30.0%
!! TCTTTTCATATCTTGGTTTG+TGG - chr5.4:9257737-9257756 MS.gene015248:intron 30.0%
!! TTGGTTTTTATTGCTGGATA+TGG - chr5.4:9257859-9257878 MS.gene015248:intron 30.0%
!!! CTGTTTTTTAAGCTTGTGAA+TGG - chr5.4:9258855-9258874 MS.gene015248:CDS 30.0%
AAGGACCTAAACAACTCAAA+AGG - chr5.4:9259228-9259247 MS.gene015248:intron 35.0%
ACAGTTAAGATTACCTCCAA+AGG - chr5.4:9259209-9259228 MS.gene015248:intron 35.0%
ACATCTATACTCCTACATGT+TGG + chr5.4:9257227-9257246 None:intergenic 35.0%
AGAGAAATTGGATAGAGCTA+TGG - chr5.4:9260011-9260030 MS.gene015248:intron 35.0%
ATCAATGGCTTCATGATAGT+AGG - chr5.4:9258712-9258731 MS.gene015248:CDS 35.0%
ATTCTTCGTGCTGAATTCAA+GGG - chr5.4:9258666-9258685 MS.gene015248:CDS 35.0%
CATTGTGAGGTAATCGTAAA+AGG + chr5.4:9258014-9258033 None:intergenic 35.0%
CCAAGGAAGTTGAGAAATAT+TGG + chr5.4:9259809-9259828 None:intergenic 35.0%
CCAATATTTCTCAACTTCCT+TGG - chr5.4:9259806-9259825 MS.gene015248:intron 35.0%
CTATCCACTGATGAAAAGAA+AGG - chr5.4:9259856-9259875 MS.gene015248:intron 35.0%
GAGCACAATCTAACAAAAGA+GGG + chr5.4:9260110-9260129 None:intergenic 35.0%
GATATGGCTAATCTTTCTTC+AGG - chr5.4:9257335-9257354 MS.gene015248:CDS 35.0%
GATTATTGCATCCGGTTTAT+AGG + chr5.4:9259512-9259531 None:intergenic 35.0%
GATTCTGTCATGAAACCAAA+TGG + chr5.4:9258354-9258373 None:intergenic 35.0%
GCATGGAAAACTTCGTATTA+AGG + chr5.4:9260488-9260507 None:intergenic 35.0%
GGGATTAATAATGTAATGGC+GGG - chr5.4:9259383-9259402 MS.gene015248:CDS 35.0%
GGTTTCATGACAGAATCAAT+GGG - chr5.4:9258357-9258376 MS.gene015248:CDS 35.0%
GTGTTGTGGATCTATCTAAA+TGG - chr5.4:9260268-9260287 MS.gene015248:CDS 35.0%
TAAGCTTGTGAATGGTACTT+GGG - chr5.4:9258863-9258882 MS.gene015248:CDS 35.0%
TAAGTGCAAGAATACTGCAA+GGG + chr5.4:9257313-9257332 None:intergenic 35.0%
TAGCAAGGATGTTGTTATGA+GGG - chr5.4:9259346-9259365 MS.gene015248:CDS 35.0%
TATTCTTCGTGCTGAATTCA+AGG - chr5.4:9258665-9258684 MS.gene015248:CDS 35.0%
TCTTTCAATCATGCTCAGTT+TGG - chr5.4:9258792-9258811 MS.gene015248:CDS 35.0%
TGGTTTCATGACAGAATCAA+TGG - chr5.4:9258356-9258375 MS.gene015248:CDS 35.0%
TTAAGCTTGTGAATGGTACT+TGG - chr5.4:9258862-9258881 MS.gene015248:CDS 35.0%
TTAAGTGCAAGAATACTGCA+AGG + chr5.4:9257314-9257333 None:intergenic 35.0%
TTCACTTGGTTCAAAAGTCT+TGG - chr5.4:9259970-9259989 MS.gene015248:intron 35.0%
TTGAATTCAGCACGAAGAAT+AGG + chr5.4:9258666-9258685 None:intergenic 35.0%
TTGCAGTATTCTTGCACTTA+AGG - chr5.4:9257313-9257332 MS.gene015248:CDS 35.0%
! AAAGGCTCTAATGATTCTGA+TGG - chr5.4:9259308-9259327 MS.gene015248:CDS 35.0%
! AACAACGTGCTAAGAAGTTT+TGG - chr5.4:9260448-9260467 MS.gene015248:CDS 35.0%
! ATAAGACTCATTTTCCTTGG+CGG + chr5.4:9259424-9259443 None:intergenic 35.0%
! CAACTTCCTTGGTGTATTAT+TGG - chr5.4:9259817-9259836 MS.gene015248:intron 35.0%
! CGGACTAGGTACTTTAAATT+AGG + chr5.4:9259487-9259506 None:intergenic 35.0%
! CTAATCTTTCTTCAGGTTTC+AGG - chr5.4:9257342-9257361 MS.gene015248:CDS 35.0%
! CTTTTACGATTACCTCACAA+TGG - chr5.4:9258012-9258031 MS.gene015248:intron 35.0%
! GGAAAATGAGTCTTATATGG+TGG - chr5.4:9259428-9259447 MS.gene015248:CDS 35.0%
! GGTAATCGTAAAAGGTATGA+AGG + chr5.4:9258006-9258025 None:intergenic 35.0%
! GTTTTGCACTACTAGTCATA+AGG - chr5.4:9257370-9257389 MS.gene015248:CDS 35.0%
! TGGAGGTTAACTGGATTTTA+TGG - chr5.4:9259730-9259749 MS.gene015248:CDS 35.0%
! TTCTGTTGATCGTATTGGTA+GGG - chr5.4:9259603-9259622 MS.gene015248:CDS 35.0%
! TTTCTGTTGATCGTATTGGT+AGG - chr5.4:9259602-9259621 MS.gene015248:CDS 35.0%
!! AACATTAGAGGTATCCACAT+GGG + chr5.4:9260364-9260383 None:intergenic 35.0%
!! AAGAAGTTTTGGTATCGTGA+TGG - chr5.4:9260459-9260478 MS.gene015248:CDS 35.0%
!! AAGGAAGGTGTTAAGATGAA+AGG - chr5.4:9259290-9259309 MS.gene015248:intron 35.0%
!! AGAAGTTTTGGTATCGTGAT+GGG - chr5.4:9260460-9260479 MS.gene015248:CDS 35.0%
!! TAACATTAGAGGTATCCACA+TGG + chr5.4:9260365-9260384 None:intergenic 35.0%
!! TTTCATATCTTGGTTTGTGG+CGG - chr5.4:9257740-9257759 MS.gene015248:intron 35.0%
!! TTTGAGTTGTTTAGGTCCTT+TGG + chr5.4:9259228-9259247 None:intergenic 35.0%
AATCCGACAGTTAGTGATGA+TGG - chr5.4:9259185-9259204 MS.gene015248:CDS 40.0%
ACAAAGGAACATGATGAGCA+AGG - chr5.4:9257248-9257267 MS.gene015248:CDS 40.0%
ACGTTGTCATTGTTTCAGAC+AGG + chr5.4:9259534-9259553 None:intergenic 40.0%
ACTGTTGAGAAGACTAAGGA+AGG - chr5.4:9259275-9259294 MS.gene015248:intron 40.0%
AGACTTTCTGCAGAACTAGA+GGG + chr5.4:9258263-9258282 None:intergenic 40.0%
AGAGGTAAATGACTCGTTGA+GGG - chr5.4:9259702-9259721 MS.gene015248:CDS 40.0%
AGCGGTATTAGAACCAACAT+CGG + chr5.4:9259093-9259112 None:intergenic 40.0%
AGGATGTTGTTATGAGGGAT+AGG - chr5.4:9259351-9259370 MS.gene015248:CDS 40.0%
AGTCTTACGAATCTCTTGTC+TGG + chr5.4:9260316-9260335 None:intergenic 40.0%
AGTGTTGTCAGCATGGAAAT+TGG + chr5.4:9258041-9258060 None:intergenic 40.0%
AGTTGGGCATTTGAAAGAGA+GGG - chr5.4:9258501-9258520 MS.gene015248:CDS 40.0%
ATCACACTTAACGGCATCAT+TGG - chr5.4:9259127-9259146 MS.gene015248:CDS 40.0%
ATTTCTGTTATGTTTGCGGC+AGG - chr5.4:9258568-9258587 MS.gene015248:CDS 40.0%
CAAGCTCACAATCTTCCATT+TGG - chr5.4:9258336-9258355 MS.gene015248:CDS 40.0%
CAGAGACGAGAAGAAAGTAA+CGG + chr5.4:9257194-9257213 None:intergenic 40.0%
CCACTGATGAAAAGAAAGGT+AGG - chr5.4:9259860-9259879 MS.gene015248:intron 40.0%
CGAAACGAGTTAAAGTGAAC+TGG + chr5.4:9258145-9258164 None:intergenic 40.0%
CGAGTTAAAGTGAACTGGTT+TGG + chr5.4:9258140-9258159 None:intergenic 40.0%
CTAGCAAGGATGTTGTTATG+AGG - chr5.4:9259345-9259364 MS.gene015248:CDS 40.0%
CTTCATGATAGTAGGAAGAG+TGG - chr5.4:9258720-9258739 MS.gene015248:CDS 40.0%
GAAACAAACGACCTAAACTC+AGG + chr5.4:9260195-9260214 None:intergenic 40.0%
GAGCTATGGCTAATGATAGT+TGG - chr5.4:9260025-9260044 MS.gene015248:intron 40.0%
GAGGAGAAAGAATAACCTGA+AGG + chr5.4:9257583-9257602 None:intergenic 40.0%
GATGCCGTTAAGTGTGATAT+AGG + chr5.4:9259125-9259144 None:intergenic 40.0%
GATGTTGTTATGAGGGATAG+GGG - chr5.4:9259353-9259372 MS.gene015248:CDS 40.0%
GCCTCCTATATCACACTTAA+CGG - chr5.4:9259118-9259137 MS.gene015248:CDS 40.0%
GGAGCACAATCTAACAAAAG+AGG + chr5.4:9260111-9260130 None:intergenic 40.0%
GGATGTTGTTATGAGGGATA+GGG - chr5.4:9259352-9259371 MS.gene015248:CDS 40.0%
GTACCATCATCACTAACTGT+CGG + chr5.4:9259191-9259210 None:intergenic 40.0%
GTATTAGAACCAACATCGGA+CGG + chr5.4:9259089-9259108 None:intergenic 40.0%
GTGATGCTTTACCAACATGT+AGG - chr5.4:9257213-9257232 MS.gene015248:CDS 40.0%
GTTGGACACAATTGAGATGT+GGG - chr5.4:9258311-9258330 MS.gene015248:intron 40.0%
GTTTCAGTTCTTCCATCGTA+AGG - chr5.4:9258191-9258210 MS.gene015248:intron 40.0%
TAAGTGTGATATAGGAGGCT+GGG + chr5.4:9259117-9259136 None:intergenic 40.0%
TACTAGTCATAAGGTGCGTA+CGG - chr5.4:9257379-9257398 MS.gene015248:CDS 40.0%
TAGAGGTAAATGACTCGTTG+AGG - chr5.4:9259701-9259720 MS.gene015248:CDS 40.0%
TCAGACAGGATTATTGCATC+CGG + chr5.4:9259520-9259539 None:intergenic 40.0%
TCAGCTGCACAAATACTTTC+TGG + chr5.4:9258993-9259012 None:intergenic 40.0%
TCATCACTAACTGTCGGATT+AGG + chr5.4:9259185-9259204 None:intergenic 40.0%
TCTCATCAGAAGGATCATTC+TGG - chr5.4:9257425-9257444 MS.gene015248:CDS 40.0%
TCTCCAAACAAACACCTTGT+TGG + chr5.4:9258900-9258919 None:intergenic 40.0%
TGGATGGTTATGCTTTCACT+TGG - chr5.4:9259956-9259975 MS.gene015248:intron 40.0%
TGTCCAACAGAGTAGTTGTT+GGG + chr5.4:9258299-9258318 None:intergenic 40.0%
TGTTGGACACAATTGAGATG+TGG - chr5.4:9258310-9258329 MS.gene015248:intron 40.0%
TTAAGTGTGATATAGGAGGC+TGG + chr5.4:9259118-9259137 None:intergenic 40.0%
TTTATGGTATGCCAGAAGGA+GGG - chr5.4:9259746-9259765 MS.gene015248:CDS 40.0%
! ATTGCTGGATATGGGCTTTT+TGG - chr5.4:9257868-9257887 MS.gene015248:intron 40.0%
! CCTACCTTTCTTTTCATCAG+TGG + chr5.4:9259863-9259882 None:intergenic 40.0%
! GAATCTCTTGTCTGGTGTTT+TGG + chr5.4:9260308-9260327 None:intergenic 40.0%
! GATCCAACAAGGTGTTTGTT+TGG - chr5.4:9258894-9258913 MS.gene015248:CDS 40.0%
! GGATTTTATGGTATGCCAGA+AGG - chr5.4:9259742-9259761 MS.gene015248:CDS 40.0%
! GGTGTTTGTTTCTCATCAGA+AGG - chr5.4:9257415-9257434 MS.gene015248:CDS 40.0%
! GTCTTATATGGTGGAACTGT+CGG - chr5.4:9259437-9259456 MS.gene015248:CDS 40.0%
! TAAGACTCATTTTCCTTGGC+GGG + chr5.4:9259423-9259442 None:intergenic 40.0%
! TCTGTTGATCGTATTGGTAG+GGG - chr5.4:9259604-9259623 MS.gene015248:CDS 40.0%
! TCTTATATGGTGGAACTGTC+GGG - chr5.4:9259438-9259457 MS.gene015248:CDS 40.0%
! TGGCAGATTACTGCAAGTTT+TGG - chr5.4:9257513-9257532 MS.gene015248:CDS 40.0%
! TTTGTTTCTCAACGATGGCA+AGG - chr5.4:9260207-9260226 MS.gene015248:CDS 40.0%
! TTTTATGGTATGCCAGAAGG+AGG - chr5.4:9259745-9259764 MS.gene015248:CDS 40.0%
!! GAAGTTTTGGTATCGTGATG+GGG - chr5.4:9260461-9260480 MS.gene015248:CDS 40.0%
!! GATGCATGGTAGGGTATTTT+TGG - chr5.4:9257454-9257473 MS.gene015248:CDS 40.0%
!! TTCTGATGGTGGTCAAGATA+CGG - chr5.4:9259322-9259341 MS.gene015248:CDS 40.0%
AAAGCGAAAGCGACATTGAC+CGG + chr5.4:9260151-9260170 None:intergenic 45.0%
AAGGAACATGATGAGCAAGG+AGG - chr5.4:9257251-9257270 MS.gene015248:CDS 45.0%
AGGAACATGATGAGCAAGGA+GGG - chr5.4:9257252-9257271 MS.gene015248:CDS 45.0%
AGGGTAGTGATCAGAAGATG+TGG + chr5.4:9260091-9260110 None:intergenic 45.0%
ATCATTGGCGCATATGCTGA+AGG - chr5.4:9259142-9259161 MS.gene015248:CDS 45.0%
ATGTTGAAGAAGGCAAGCGT+TGG - chr5.4:9258637-9258656 MS.gene015248:CDS 45.0%
CAAAGAGCCAAGAACCAGTA+CGG + chr5.4:9258233-9258252 None:intergenic 45.0%
CATGATAGTAGGAAGAGTGG+TGG - chr5.4:9258723-9258742 MS.gene015248:CDS 45.0%
CATTCTGGATCAGTGATGCA+TGG - chr5.4:9257440-9257459 MS.gene015248:CDS 45.0%
CCAATCATGAGCTGACAGTA+AGG + chr5.4:9257698-9257717 None:intergenic 45.0%
CCTTACTGTCAGCTCATGAT+TGG - chr5.4:9257695-9257714 MS.gene015248:intron 45.0%
CGGAATCCTTGAATAAGCCA+CGG + chr5.4:9259898-9259917 None:intergenic 45.0%
CGTGGCTTATTCAAGGATTC+CGG - chr5.4:9259896-9259915 MS.gene015248:intron 45.0%
CTGACAACACTACTGCCAAT+CGG - chr5.4:9258050-9258069 MS.gene015248:intron 45.0%
GAGACTTTCTGCAGAACTAG+AGG + chr5.4:9258264-9258283 None:intergenic 45.0%
GAGGTAAATGACTCGTTGAG+GGG - chr5.4:9259703-9259722 MS.gene015248:CDS 45.0%
GAGTTGGGCATTTGAAAGAG+AGG - chr5.4:9258500-9258519 MS.gene015248:CDS 45.0%
GAGTTGTTTAGGTCCTTTGG+AGG + chr5.4:9259225-9259244 None:intergenic 45.0%
GATTGAGCAAGCTGCATAAC+TGG + chr5.4:9258963-9258982 None:intergenic 45.0%
GCAGTCCAGCAAATCAAAGT+TGG + chr5.4:9258092-9258111 None:intergenic 45.0%
GCCGTTAAGTGTGATATAGG+AGG + chr5.4:9259122-9259141 None:intergenic 45.0%
GGAAATTGGAAGCCATTGTG+AGG + chr5.4:9258027-9258046 None:intergenic 45.0%
GGACACTGTTGAGAAGACTA+AGG - chr5.4:9259271-9259290 MS.gene015248:intron 45.0%
GTGTCCAACAGAGTAGTTGT+TGG + chr5.4:9258300-9258319 None:intergenic 45.0%
GTTCTGCAGAAAGTCTCCTT+CGG - chr5.4:9258267-9258286 MS.gene015248:intron 45.0%
GTTCTTCCATCGTAAGGACA+TGG - chr5.4:9258197-9258216 MS.gene015248:intron 45.0%
TAAGGTAGGAGAACCTCTTG+TGG - chr5.4:9258476-9258495 MS.gene015248:CDS 45.0%
TACTGTCAGCTCATGATTGG+AGG - chr5.4:9257698-9257717 MS.gene015248:intron 45.0%
TCAATCATGCTCAGTTTGGC+CGG - chr5.4:9258796-9258815 MS.gene015248:CDS 45.0%
TCTCAACGATGGCAAGGTTA+TGG - chr5.4:9260213-9260232 MS.gene015248:CDS 45.0%
TGGATCAGTGATGCATGGTA+GGG - chr5.4:9257445-9257464 MS.gene015248:CDS 45.0%
TGTTATGTTTGCGGCAGGTT+GGG - chr5.4:9258573-9258592 MS.gene015248:CDS 45.0%
TGTTGAAGAAGGCAAGCGTT+GGG - chr5.4:9258638-9258657 MS.gene015248:CDS 45.0%
TTGCATCCGGTTTATAGGTC+CGG + chr5.4:9259507-9259526 None:intergenic 45.0%
TTGTGCAGCTGAAAGTGATG+AGG - chr5.4:9259001-9259020 MS.gene015248:CDS 45.0%
! AATAATGTAATGGCGGGACC+TGG - chr5.4:9259389-9259408 MS.gene015248:CDS 45.0%
! ATGCAGCTTGCTCAATCTCA+TGG - chr5.4:9258966-9258985 MS.gene015248:CDS 45.0%
! CACGATTGGTTCAAGAAGCT+AGG - chr5.4:9259033-9259052 MS.gene015248:CDS 45.0%
! CTCTGTGTTGCTCTTAAGGT+AGG - chr5.4:9258462-9258481 MS.gene015248:CDS 45.0%
! CTTATATGGTGGAACTGTCG+GGG - chr5.4:9259439-9259458 MS.gene015248:CDS 45.0%
! GAGGTGGTTTGGCATGTTTA+TGG - chr5.4:9259626-9259645 MS.gene015248:CDS 45.0%
! GGAGCACTTTCAATTGAGAG+AGG + chr5.4:9259068-9259087 None:intergenic 45.0%
! GGAGCAGTGTTACGAGTTTT+TGG + chr5.4:9258942-9258961 None:intergenic 45.0%
! GGCTAGTTGAACCTGAGTTT+AGG - chr5.4:9260181-9260200 MS.gene015248:CDS 45.0%
! GGCTCTAATGATTCTGATGG+TGG - chr5.4:9259311-9259330 MS.gene015248:CDS 45.0%
! GGGAGTCTTTTGATCCAACA+AGG - chr5.4:9258883-9258902 MS.gene015248:CDS 45.0%
! GGTCGTTTGTTTCTCAACGA+TGG - chr5.4:9260202-9260221 MS.gene015248:CDS 45.0%
!! GAATCAATGGGCTGTCTTCT+CGG - chr5.4:9258369-9258388 MS.gene015248:CDS 45.0%
!! TAGAGGTATCCACATGGGAA+CGG + chr5.4:9260359-9260378 None:intergenic 45.0%
!! TGATTTGCTGGACTGCTGTT+TGG - chr5.4:9258096-9258115 MS.gene015248:intron 45.0%
!! TGTTTCTGGAAGCAACCTTC+AGG - chr5.4:9257565-9257584 MS.gene015248:CDS 45.0%
!! TTGGTGTTACGCTCTCTGTT+TGG - chr5.4:9257162-9257181 MS.gene015248:CDS 45.0%
!!! CGAGTTTTTGGAACCACTTG+CGG + chr5.4:9258930-9258949 None:intergenic 45.0%
!!! CGGAGCCTTTTGAGTTGTTT+AGG + chr5.4:9259236-9259255 None:intergenic 45.0%
!!! GGGCTTTTTGGTTCAACAGA+AGG - chr5.4:9257880-9257899 MS.gene015248:intron 45.0%
AAGCGACATTGACCGGAACT+AGG + chr5.4:9260144-9260163 None:intergenic 50.0%
AATCCCTCCCAATCTTCACC+CGG + chr5.4:9258818-9258837 None:intergenic 50.0%
ACAACTCAAAAGGCTCCGCA+TGG - chr5.4:9259238-9259257 MS.gene015248:intron 50.0%
ACATGATGAGCAAGGAGGGA+TGG - chr5.4:9257256-9257275 MS.gene015248:CDS 50.0%
AGAACCTCTTGTGGCGAGTT+GGG - chr5.4:9258485-9258504 MS.gene015248:CDS 50.0%
AGCAATGGTGCGATGCATGA+TGG - chr5.4:9258750-9258769 MS.gene015248:CDS 50.0%
AGGGGAAGATGGAGGTTAAC+TGG - chr5.4:9259721-9259740 MS.gene015248:CDS 50.0%
AGTTTGGCCGGGTGAAGATT+GGG - chr5.4:9258808-9258827 MS.gene015248:CDS 50.0%
ATGACTCGTTGAGGGGAAGA+TGG - chr5.4:9259710-9259729 MS.gene015248:CDS 50.0%
ATGAGGGATAGGGGACTATG+TGG - chr5.4:9259362-9259381 MS.gene015248:CDS 50.0%
ATTTGCAGGAGCAGACCGAT+TGG + chr5.4:9258068-9258087 None:intergenic 50.0%
CAATCATGCTCAGTTTGGCC+GGG - chr5.4:9258797-9258816 MS.gene015248:CDS 50.0%
CAGCATCCAAAACAGCTTGC+CGG + chr5.4:9259918-9259937 None:intergenic 50.0%
CCTAGTCCGGACCTATAAAC+CGG - chr5.4:9259498-9259517 MS.gene015248:intron 50.0%
CGACCCAACAACTACTCTGT+TGG - chr5.4:9258293-9258312 MS.gene015248:intron 50.0%
CGTCAACCGTGGCTTATTCA+AGG - chr5.4:9259889-9259908 MS.gene015248:intron 50.0%
CTGGATCAGTGATGCATGGT+AGG - chr5.4:9257444-9257463 MS.gene015248:CDS 50.0%
CTGTTATGTTTGCGGCAGGT+TGG - chr5.4:9258572-9258591 MS.gene015248:CDS 50.0%
GAATTCAAGGGCAGCAGTAC+CGG - chr5.4:9258678-9258697 MS.gene015248:CDS 50.0%
GGTGAAGATTGGGAGGGATT+TGG - chr5.4:9258818-9258837 MS.gene015248:CDS 50.0%
TATTGGTAGGGGAGGTGGTT+TGG - chr5.4:9259615-9259634 MS.gene015248:CDS 50.0%
TCCTTGCATAGCACGCTTCT+TGG - chr5.4:9257493-9257512 MS.gene015248:CDS 50.0%
TCGCGCTGTGGAAGAGAAAT+TGG - chr5.4:9259999-9260018 MS.gene015248:intron 50.0%
TGAAGCTATCCGTTCCCATG+TGG - chr5.4:9260347-9260366 MS.gene015248:CDS 50.0%
TGAGGAACGCATTGCACGAT+TGG - chr5.4:9259019-9259038 MS.gene015248:CDS 50.0%
TGAGGGATAGGGGACTATGT+GGG - chr5.4:9259363-9259382 MS.gene015248:CDS 50.0%
TGGCAGTAGTGTTGTCAGCA+TGG + chr5.4:9258048-9258067 None:intergenic 50.0%
TGGTCAAGATACGGCTAGCA+AGG - chr5.4:9259331-9259350 MS.gene015248:CDS 50.0%
TGTCCTCGAGTTCTTCCATG+CGG + chr5.4:9259256-9259275 None:intergenic 50.0%
TTGGCGCATATGCTGAAGGT+TGG - chr5.4:9259146-9259165 MS.gene015248:CDS 50.0%
! AAGAGTGGTGGTGAGAGCAA+TGG - chr5.4:9258735-9258754 MS.gene015248:CDS 50.0%
! AGGATTCCGGCAAGCTGTTT+TGG - chr5.4:9259909-9259928 MS.gene015248:intron 50.0%
! CCATTGATTGTCAACCCCTC+CGG + chr5.4:9258700-9258719 None:intergenic 50.0%
! GCGTCTCTGTGTTGCTCTTA+AGG - chr5.4:9258458-9258477 MS.gene015248:CDS 50.0%
! GTTGAAGAAGGCAAGCGTTG+GGG - chr5.4:9258639-9258658 MS.gene015248:CDS 50.0%
! GTTGATCGTATTGGTAGGGG+AGG - chr5.4:9259607-9259626 MS.gene015248:CDS 50.0%
! TCGGATTAGGCATCCCACTT+AGG + chr5.4:9259172-9259191 None:intergenic 50.0%
! TGGAGAAAGTGTACCGCAAG+TGG - chr5.4:9258914-9258933 MS.gene015248:CDS 50.0%
! TTGCTGGACTGCTGTTTGGT+GGG - chr5.4:9258100-9258119 MS.gene015248:intron 50.0%
! TTTGCTGGACTGCTGTTTGG+TGG - chr5.4:9258099-9258118 MS.gene015248:intron 50.0%
!! ATGCTGAAGGTTGGCCTAAG+TGG - chr5.4:9259155-9259174 MS.gene015248:CDS 50.0%
!! GCTTTCGCTTTGAGAATGCG+TGG - chr5.4:9260160-9260179 MS.gene015248:CDS 50.0%
!! GTGTGATCCGTACTGGTTCT+TGG - chr5.4:9258223-9258242 MS.gene015248:intron 50.0%
!! TGCTGAAGGTTGGCCTAAGT+GGG - chr5.4:9259156-9259175 MS.gene015248:CDS 50.0%
AAGGTGCGTACGGTCTCATG+TGG - chr5.4:9257389-9257408 MS.gene015248:CDS 55.0%
AATGCCCAACTCGCCACAAG+AGG + chr5.4:9258492-9258511 None:intergenic 55.0%
ACTCGTTGAGGGGAAGATGG+AGG - chr5.4:9259713-9259732 MS.gene015248:CDS 55.0%
AGCAAGGAGGGATGGCAGTT+TGG - chr5.4:9257264-9257283 MS.gene015248:CDS 55.0%
AGTTGTTGGGTCGTCACCGA+AGG + chr5.4:9258286-9258305 None:intergenic 55.0%
ATGGAGCGTGTGATCCGTAC+TGG - chr5.4:9258216-9258235 MS.gene015248:intron 55.0%
ATGGTATGCCAGAAGGAGGG+AGG - chr5.4:9259749-9259768 MS.gene015248:CDS 55.0%
CAAGGAGGGATGGCAGTTTG+GGG - chr5.4:9257266-9257285 MS.gene015248:CDS 55.0%
CACGCTCCATGTCCTTACGA+TGG + chr5.4:9258206-9258225 None:intergenic 55.0%
CAGTTTGGCCGGGTGAAGAT+TGG - chr5.4:9258807-9258826 MS.gene015248:CDS 55.0%
CATTGACCGGAACTAGGCAC+AGG + chr5.4:9260138-9260157 None:intergenic 55.0%
CCGGAGGGGTTGACAATCAA+TGG - chr5.4:9258697-9258716 MS.gene015248:CDS 55.0%
CCGGTTTATAGGTCCGGACT+AGG + chr5.4:9259501-9259520 None:intergenic 55.0%
GAGAACCTCTTGTGGCGAGT+TGG - chr5.4:9258484-9258503 MS.gene015248:CDS 55.0%
GAGGGAGGAGAAGAGAGTCT+TGG - chr5.4:9259764-9259783 MS.gene015248:CDS 55.0%
GCAAGGAGGGATGGCAGTTT+GGG - chr5.4:9257265-9257284 MS.gene015248:CDS 55.0%
GCATGATGGCATGGGTCTAG+TGG - chr5.4:9258764-9258783 MS.gene015248:CDS 55.0%
GCGTACGGTCTCATGTGGTA+TGG - chr5.4:9257394-9257413 MS.gene015248:CDS 55.0%
GGTGCGATGCATGATGGCAT+GGG - chr5.4:9258756-9258775 MS.gene015248:CDS 55.0%
GTAGGTCTGATCGTCAACCG+TGG - chr5.4:9259878-9259897 MS.gene015248:intron 55.0%
TCTCTTCTCCTCCCTCCTTC+TGG + chr5.4:9259760-9259779 None:intergenic 55.0%
TCTTGGAACTGTTCGCGCTG+TGG - chr5.4:9259987-9260006 MS.gene015248:intron 55.0%
TGATATAGGAGGCTGGGCAG+CGG + chr5.4:9259111-9259130 None:intergenic 55.0%
TGGTGCGATGCATGATGGCA+TGG - chr5.4:9258755-9258774 MS.gene015248:CDS 55.0%
TGGTGGAACTGTCGGGGTTT+AGG - chr5.4:9259445-9259464 MS.gene015248:CDS 55.0%
! GATCGTATTGGTAGGGGAGG+TGG - chr5.4:9259610-9259629 MS.gene015248:CDS 55.0%
! GCCAAGAAGCGTGCTATGCA+AGG + chr5.4:9257497-9257516 None:intergenic 55.0%
!! CGGCAAGCTGTTTTGGATGC+TGG - chr5.4:9259916-9259935 MS.gene015248:intron 55.0%
!! GAAAGTGCTCCGTCCGATGT+TGG - chr5.4:9259077-9259096 MS.gene015248:CDS 55.0%
CCGCAACCTGTGCCTAGTTC+CGG - chr5.4:9260129-9260148 MS.gene015248:CDS 60.0%
CCGGAACTAGGCACAGGTTG+CGG + chr5.4:9260132-9260151 None:intergenic 60.0%
GCTCCGCATGGAAGAACTCG+AGG - chr5.4:9259250-9259269 MS.gene015248:intron 60.0%
GGATGGCAGTTTGGGGAAGC+AGG - chr5.4:9257273-9257292 MS.gene015248:CDS 60.0%
TGGCAGTTTGGGGAAGCAGG+AGG - chr5.4:9257276-9257295 MS.gene015248:CDS 60.0%
TGGCCGGGTGAAGATTGGGA+GGG - chr5.4:9258812-9258831 MS.gene015248:CDS 60.0%
TGTCTTCTCGGCAGTCGCGT+TGG - chr5.4:9258381-9258400 MS.gene015248:CDS 60.0%
TTGGCCGGGTGAAGATTGGG+AGG - chr5.4:9258811-9258830 MS.gene015248:CDS 60.0%
! TCAAGGGCAGCAGTACCGGA+GGG - chr5.4:9258682-9258701 MS.gene015248:CDS 60.0%
! TGGACTGCTGTTTGGTGGGC+AGG - chr5.4:9258104-9258123 MS.gene015248:intron 60.0%
! TTCAAGGGCAGCAGTACCGG+AGG - chr5.4:9258681-9258700 MS.gene015248:CDS 60.0%
! TTCTGGTGCTTGCTGCCGCA+TGG + chr5.4:9260505-9260524 None:intergenic 60.0%
!! CTCATTTTCCTTGGCGGGCC+TGG + chr5.4:9259418-9259437 None:intergenic 60.0%
CTTCTCGGCAGTCGCGTTGG+TGG - chr5.4:9258384-9258403 MS.gene015248:CDS 65.0%
! AATGGCGGGACCTGGACACC+AGG - chr5.4:9259397-9259416 MS.gene015248:CDS 65.0%
! CAAGGGCAGCAGTACCGGAG+GGG - chr5.4:9258683-9258702 MS.gene015248:CDS 65.0%
CCTGGACACCAGGCCCGCCA+AGG - chr5.4:9259407-9259426 MS.gene015248:CDS 75.0%
! CCTTGGCGGGCCTGGTGTCC+AGG + chr5.4:9259410-9259429 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 9257158 9260533 9257158 ID=MS.gene015248
chr5.4 mRNA 9257158 9260533 9257158 ID=MS.gene015248.t1;Parent=MS.gene015248
chr5.4 exon 9260105 9260533 9260105 ID=MS.gene015248.t1.exon1;Parent=MS.gene015248.t1
chr5.4 CDS 9260105 9260533 9260105 ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1
chr5.4 exon 9259574 9259792 9259574 ID=MS.gene015248.t1.exon2;Parent=MS.gene015248.t1
chr5.4 CDS 9259574 9259792 9259574 ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1
chr5.4 exon 9259293 9259493 9259293 ID=MS.gene015248.t1.exon3;Parent=MS.gene015248.t1
chr5.4 CDS 9259293 9259493 9259293 ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1
chr5.4 exon 9258336 9259211 9258336 ID=MS.gene015248.t1.exon4;Parent=MS.gene015248.t1
chr5.4 CDS 9258336 9259211 9258336 ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1
chr5.4 exon 9257158 9257628 9257158 ID=MS.gene015248.t1.exon5;Parent=MS.gene015248.t1
chr5.4 CDS 9257158 9257628 9257158 ID=cds.MS.gene015248.t1;Parent=MS.gene015248.t1
Gene Sequence

>MS.gene015248

ATGATTGGTGTTACGCTCTCTGTTTGGTCTGTTCCGTTACTTTCTTCTCGTCTCTGTGATGCTTTACCAACATGTAGGAGTATAGATGTTACAAAGGAACATGATGAGCAAGGAGGGATGGCAGTTTGGGGAAGCAGGAGGCTCTTTGTGATCCCTTGCAGTATTCTTGCACTTAAGGATATGGCTAATCTTTCTTCAGGTTTCAGGAGCATGTTTTGCACTACTAGTCATAAGGTGCGTACGGTCTCATGTGGTATGGTGTTTGTTTCTCATCAGAAGGATCATTCTGGATCAGTGATGCATGGTAGGGTATTTTTGGTATATTACACTTCAGTTCCTTGCATAGCACGCTTCTTGGCAGATTACTGCAAGTTTTGGAGTATTGAATCCAAAAATATATATCTAGATGTTTCTGGAAGCAACCTTCAGGTTATTCTTTCTCCTCATAAATTTATTTATTCTCTAAATATGTTTATTGGATCCAAGTTTATTTGGTGTATATTTTTGAGAGGATATACTTGGTTAGAAAGTTCACTACCTTACTGTCAGCTCATGATTGGAGGATGCATGCTTATATTTTCTTTTCATATCTTGGTTTGTGGCGGTTTGCATATGAAAATTGATTACAAAAATATGTTTCTTTGGTCCCAAAATATATTGGATATTCAATTTCAAATTATGCTTCGTAAAGCAAGATTTGTTTGGTTTTTATTGCTGGATATGGGCTTTTTGGTTCAACAGAAGGTTCTAGTAGCTATGCTTCATGACTCTATAAATATCATTCAGTATCAAGGAGTCCTTCACATTCAATCAAATTGCAAATATCAGCTTTCTTTCTTCTTCTGCCTTCATACCTTTTACGATTACCTCACAATGGCTTCCAATTTCCATGCTGACAACACTACTGCCAATCGGTCTGCTCCTGCAAATTCCAACTTTGATTTGCTGGACTGCTGTTTGGTGGGCAGGCTGCTGATTTCCAAACCAGTTCACTTTAACTCGTTTCGTGATCGTATGATAACAATCGCTTCATGTTTCAGTTCTTCCATCGTAAGGACATGGAGCGTGTGATCCGTACTGGTTCTTGGCTCTTTGATAACTTCCCTCTAGTTCTGCAGAAAGTCTCCTTCGGTGACGACCCAACAACTACTCTGTTGGACACAATTGAGATGTGGGTTCAAGCTCACAATCTTCCATTTGGTTTCATGACAGAATCAATGGGCTGTCTTCTCGGCAGTCGCGTTGGTGGTCTTGTCAAGTATGATGCACAGAATAATTTTGATTCTTGAAGGAGATTCATGCGTCTCTGTGTTGCTCTTAAGGTAGGAGAACCTCTTGTGGCGAGTTGGGCATTTGAAAGAGAGGGTGCTGATGCTGTTACTGTGTTTTTTCGCTATGAAAAACTCGATAATTTCTGTTATGTTTGCGGCAGGTTGGGTCATAATGATAGCTATTGTCCGGATCGTTATGAAGACAATTATGTTGAAGAAGGCAAGCGTTGGGGACCTATTCTTCGTGCTGAATTCAAGGGCAGCAGTACCGGAGGGGTTGACAATCAATGGCTTCATGATAGTAGGAAGAGTGGTGGTGAGAGCAATGGTGCGATGCATGATGGCATGGGTCTAGTGGCGCTTTCTTTCAATCATGCTCAGTTTGGCCGGGTGAAGATTGGGAGGGATTTGGTTACGAAAGTACTGCTGTTTTTTAAGCTTGTGAATGGTACTTGGGAGTCTTTTGATCCAACAAGGTGTTTGTTTGGAGAAAGTGTACCGCAAGTGGTTCCAAAAACTCGTAACACTGCTCCAGTTATGCAGCTTGCTCAATCTCATGGTCCAGAAAGTATTTGTGCAGCTGAAAGTGATGAGGAACGCATTGCACGATTGGTTCAAGAAGCTAGGCTCAAGAATCCTCTCTCAATTGAAAGTGCTCCGTCCGATGTTGGTTCTAATACCGCTGCCCAGCCTCCTATATCACACTTAACGGCATCATTGGCGCATATGCTGAAGGTTGGCCTAAGTGGGATGCCTAATCCGACAGTTAGTGATGATGGTACAGTTAAGATTACCTCCAAAGGACCTAAACAACTCAAAAGGCTCCGCATGGAAGAACTCGAGGACACTGTTGAGAAGACTAAGGAAGGTGTTAAGATGAAAGGCTCTAATGATTCTGATGGTGGTCAAGATACGGCTAGCAAGGATGTTGTTATGAGGGATAGGGGACTATGTGGGATTAATAATGTAATGGCGGGACCTGGACACCAGGCCCGCCAAGGAAAATGAGTCTTATATGGTGGAACTGTCGGGGTTTAGGTAGCCCGAGCATAGTTCCTAATTTAAAGTACCTAGTCCGGACCTATAAACCGGATGCAATAATCCTGTCTGAAACAATGACAACGTCTAATAAAATTGAAGAATTGAAATATATGTTGGCTTTTGATTACTGTTTTTCTGTTGATCGTATTGGTAGGGGAGGTGGTTTGGCATGTTTATGGAATAAGAACTTTAATTGTAATATCACAAACTTCTGCCAAAATCATATTGATATAGAGGTAAATGACTCGTTGAGGGGAAGATGGAGGTTAACTGGATTTTATGGTATGCCAGAAGGAGGGAGGAGAAGAGAGTCTTGGAACTTACTTCGACAATTATCCAATATTTCTCAACTTCCTTGGTGTATTATTGGTGATTTTAATGACATTCTATCCACTGATGAAAAGAAAGGTAGGTCTGATCGTCAACCGTGGCTTATTCAAGGATTCCGGCAAGCTGTTTTGGATGCTGGACTTACTGATATTCATATGGATGGTTATGCTTTCACTTGGTTCAAAAGTCTTGGAACTGTTCGCGCTGTGGAAGAGAAATTGGATAGAGCTATGGCTAATGATAGTTGGTTTGATAAATTTCAGAATGCAAAGCTTGAGTGTCTTACTACCACATCTTCTGATCACTACCCTCTTTTGTTAGATTGTGCTCCGCAACCTGTGCCTAGTTCCGGTCAATGTCGCTTTCGCTTTGAGAATGCGTGGCTAGTTGAACCTGAGTTTAGGTCGTTTGTTTCTCAACGATGGCAAGGTTATGGTGATCGTCCTCTTGTGAATAAACTCAATCAATGTGTTGTGGATCTATCTAAATGGAGCATGAATACTGACCAAAACACCAGACAAGAGATTCGTAAGACTCAACGTAAGCTTGAAGCTATCCGTTCCCATGTGGATACCTCTAATGTTAGTTATTTTAACATGTTAAGACATAGGTTGGATAAATTGTTGATCAAAGATGATATGTTCTGGAAACAACGTGCTAAGAAGTTTTGGTATCGTGATGGGGACCTTAATACGAAGTTTTCCATGCGGCAGCAAGCACCAGAAGAAAGTTGA

Protein sequence

>MS.gene015248.t1

MIGVTLSVWSVPLLSSRLCDALPTCRSIDVTKEHDEQGGMAVWGSRRLFVIPCSILALKDMANLSSGFRSMFCTTSHKVRTVSCGMVFVSHQKDHSGSVMHGRVFLVYYTSVPCIARFLADYCKFWSIESKNIYLDVSGSNLQKVLVAMLHDSINIIQYQGVLHIQSNCKYQLSFFFCLHTFYDYLTMASNFHADNTTANRSAPANSNFDLLDCCLFFHRKDMERVIRTGSWLFDNFPLVLQKVSFGDDPTTTLLDTIEMWVQAHNLPFGFMTESMGCLLGSRVGEPLVASWAFEREGADAVTVFFRYEKLDNFCYVCGRLGHNDSYCPDRYEDNYVEEGKRWGPILRAEFKGSSTGGVDNQWLHDSRKSGGESNGAMHDGMGLVALSFNHAQFGRVKIGRDLVTKVLLFFKLVNGTWESFDPTRCLFGESVPQVVPKTRNTAPVMQLAQSHGPESICAAESDEERIARLVQEARLKNPLSIESAPSDVGSNTAAQPPISHLTASLAHMLKVGLSGMPNPTVSDDGTVKITSKGPKQLKRLRMEELEDTVEKTKEGVKMKGSNDSDGGQDTASKDNAKLECLTTTSSDHYPLLLDCAPQPVPSSGQCRFRFENAWLVEPEFRSFVSQRWQGYGDRPLVNKLNQCVVDLSKWSMNTDQNTRQEIRKTQRKLEAIRSHVDTSNVSYFNMLRHRLDKLLIKDDMFWKQRAKKFWYRDGDLNTKFSMRQQAPEES