AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021965

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021965.t1 MTR_0010s0370 41.573 178 79 3 1 154 4 180 2.01e-40 140
MS.gene021965.t1 MTR_0010s0350 41.573 178 79 3 1 154 4 180 2.01e-40 140
MS.gene021965.t1 MTR_1g036720 48.624 109 55 1 1 109 4 111 2.26e-30 111
MS.gene021965.t1 MTR_3g053920 27.556 225 118 4 1 225 8 187 5.57e-24 99.4
MS.gene021965.t1 MTR_2g061500 36.667 120 73 1 4 123 11 127 1.03e-21 89.4
MS.gene021965.t1 MTR_6g033215 25.714 175 105 2 23 172 120 294 8.13e-18 82.4
MS.gene021965.t1 MTR_4g103530 35.644 101 61 1 55 151 5 105 3.02e-16 76.3
MS.gene021965.t1 MTR_7g011710 32.184 87 59 0 51 137 1 87 5.31e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 84 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAGCTATCAGAATTT+TGG 0.256261 7.1:+80603305 MS.gene021965:CDS
CCGATCATGTCGACAAAGTT+TGG 0.285189 7.1:-80605196 None:intergenic
GATGGACATACTTTGATTAT+CGG 0.304255 7.1:+80603439 MS.gene021965:CDS
CCCTCAACCATGTACCCTAT+TGG 0.355933 7.1:+80603497 MS.gene021965:CDS
TGAAGCCACTGTGACTTTGA+TGG 0.357164 7.1:-80603884 None:intergenic
TGTCTCTCGGATGAAAGAAT+TGG 0.372062 7.1:-80603381 None:intergenic
CGTCATCTGGATTCGAGAAT+AGG 0.373979 7.1:-80603805 None:intergenic
GAATTACCCTTCTGAGGTAT+TGG 0.375895 7.1:-80603953 None:intergenic
ATGACGATGGAGTCCGGTTA+TGG 0.377968 7.1:+80603822 MS.gene021965:CDS
TTTGCAGTAGCACGAAAGTT+TGG 0.391174 7.1:-80605310 None:intergenic
CCTCAACCATGTACCCTATT+GGG 0.400791 7.1:+80603498 MS.gene021965:CDS
AACCGGACTCCATCGTCATC+TGG 0.416200 7.1:-80603818 None:intergenic
CAGACCTTCGTGCAGATAAG+AGG 0.423821 7.1:+80603849 MS.gene021965:CDS
GTGCTACTGCAAACAATTTG+AGG 0.428351 7.1:+80605320 MS.gene021965:CDS
TGATCAAGTTTGAGCAATAA+TGG 0.433930 7.1:-80605115 None:intergenic
ATCTTCTTCATCCGCATCAA+TGG 0.437897 7.1:-80603677 None:intergenic
TCTCCTTCATCATACGGGTT+CGG 0.441318 7.1:-80603288 None:intergenic
ATAGCTTCTCCTTCATCATA+CGG 0.444748 7.1:-80603294 None:intergenic
CGATCATGTCGACAAAGTTT+GGG 0.454775 7.1:-80605195 None:intergenic
TCATGAACTTGCACCCAATA+GGG 0.455286 7.1:-80603511 None:intergenic
ATCCAGATGACGATGGAGTC+CGG 0.459742 7.1:+80603816 MS.gene021965:CDS
CTTGGTTGGGAGATTCTTGA+CGG 0.462561 7.1:+80603255 MS.gene021965:CDS
GTCTGCGACATACAACCAAC+AGG 0.466393 7.1:-80603538 None:intergenic
CGTATTTAAACTTCACTTCG+TGG 0.471547 7.1:-80603718 None:intergenic
CCCAATAGGGTACATGGTTG+AGG 0.473432 7.1:-80603498 None:intergenic
AACCATGCCCTATGCTTGGT+TGG 0.480596 7.1:+80603241 MS.gene021965:CDS
TGTTATTACTGTGGCATGCT+CGG 0.486041 7.1:+80603758 MS.gene021965:CDS
GAAGGTCTGAGCTCCATAAC+CGG 0.487520 7.1:-80603835 None:intergenic
GTCATGAACTTGCACCCAAT+AGG 0.488903 7.1:-80603512 None:intergenic
GCAGATAAGAGGAGAGGAGC+AGG 0.489610 7.1:+80603860 MS.gene021965:CDS
GCGCTTCGGTCGTATATGCT+CGG 0.491821 7.1:-80605140 None:intergenic
ACCATGCCCTATGCTTGGTT+GGG 0.491826 7.1:+80603242 MS.gene021965:CDS
TGGTTGAGGGGAACCGTTGT+GGG 0.497894 7.1:-80603484 None:intergenic
GGTTGTATGTCGCAGACTGC+AGG 0.498135 7.1:+80603544 MS.gene021965:CDS
CGCTTCGGTCGTATATGCTC+GGG 0.499612 7.1:-80605139 None:intergenic
GCTTCATGAAGAAGGTGTTA+AGG 0.499944 7.1:+80603901 MS.gene021965:CDS
TCAAAACGTAAAGTGCGCTT+CGG 0.504686 7.1:-80605154 None:intergenic
GATCCGAACCCGTATGATGA+AGG 0.506778 7.1:+80603285 MS.gene021965:CDS
CTCAGCTCGTCTGATTAACC+TGG 0.508689 7.1:+80605069 MS.gene021965:intron
TAGAGTTCCAATACCTCAGA+AGG 0.509652 7.1:+80603946 MS.gene021965:CDS
TTGATAGCCACTTTACAGAC+AGG 0.511734 7.1:-80603331 None:intergenic
AAAACTCTTTCCATGTCTCT+CGG 0.516820 7.1:-80603394 None:intergenic
CTTGCACCCAATAGGGTACA+TGG 0.519598 7.1:-80603504 None:intergenic
GTATTTAAACTTCACTTCGT+GGG 0.523126 7.1:-80603717 None:intergenic
CCAATAGGGTACATGGTTGA+GGG 0.528920 7.1:-80603497 None:intergenic
ATTACGATTGATGACTCTAC+AGG 0.532052 7.1:+80603205 MS.gene021965:CDS
TTGGCAACCTGTCTGTAAAG+TGG 0.533151 7.1:+80603324 MS.gene021965:CDS
GATCAGATGTTGCTGCCACC+AGG 0.533956 7.1:-80605087 None:intergenic
AGAAAACCATGCCCTATGCT+TGG 0.536606 7.1:+80603237 MS.gene021965:CDS
TTCATCATACGGGTTCGGAT+CGG 0.540022 7.1:-80603283 None:intergenic
AGAATCTCCCAACCAAGCAT+AGG 0.542532 7.1:-80603249 None:intergenic
GAATCTCCCAACCAAGCATA+GGG 0.546866 7.1:-80603248 None:intergenic
AAGTTTAAATACGAAAAGCT+TGG 0.550223 7.1:+80603728 MS.gene021965:CDS
TCACAGTGGCTTCATGAAGA+AGG 0.553536 7.1:+80603893 MS.gene021965:CDS
TAGCTTCTCCTTCATCATAC+GGG 0.555018 7.1:-80603293 None:intergenic
ACGATTAACTATTGCAGAAG+AGG 0.562362 7.1:+80603168 MS.gene021965:CDS
CCAAACTTTGTCGACATGAT+CGG 0.569432 7.1:+80605196 MS.gene021965:CDS
ACTCTAGATTGAGACGGTGC+TGG 0.571693 7.1:-80603929 None:intergenic
ATTCTTTCATCCGAGAGACA+TGG 0.574116 7.1:+80603384 MS.gene021965:CDS
CAAGTTCATGACGTCCCTGT+TGG 0.577825 7.1:+80603523 MS.gene021965:CDS
GGAACATTCTGTTATTACTG+TGG 0.580734 7.1:+80603749 MS.gene021965:CDS
GATGAAGAAGATCAAAGTGA+AGG 0.591922 7.1:+80603688 MS.gene021965:CDS
ATGAAGAAGATCAAAGTGAA+GGG 0.604827 7.1:+80603689 MS.gene021965:CDS
GTTGTATGTCGCAGACTGCA+GGG 0.605923 7.1:+80603545 MS.gene021965:CDS
ATGGTTGAGGGGAACCGTTG+TGG 0.610307 7.1:-80603485 None:intergenic
ATTACGGAATTACCCTTCTG+AGG 0.610493 7.1:-80603959 None:intergenic
TCCCAACCAAGCATAGGGCA+TGG 0.623148 7.1:-80603243 None:intergenic
AAACAACGTGGTGATTTCAT+CGG 0.626021 7.1:+80603568 MS.gene021965:CDS
AGCTCGTCTGATTAACCTGG+TGG 0.634470 7.1:+80605072 MS.gene021965:intron
CTCTCCTCTTATCTGCACGA+AGG 0.637531 7.1:-80603853 None:intergenic
CAATAGGGTACATGGTTGAG+GGG 0.644707 7.1:-80603496 None:intergenic
GCAAGGCAGTGTTCCCACAA+CGG 0.647644 7.1:+80603471 MS.gene021965:CDS
TCATACGGGTTCGGATCGGA+CGG 0.652326 7.1:-80603279 None:intergenic
CTTCGTGCAGATAAGAGGAG+AGG 0.653327 7.1:+80603854 MS.gene021965:CDS
ATTATCGGACTGCTTCAGCA+AGG 0.656637 7.1:+80603454 MS.gene021965:CDS
GGGTCTTAGTTGATGTACGC+AGG 0.658938 7.1:+80603654 MS.gene021965:intron
ATGTACGCAGGCCATTGATG+CGG 0.664135 7.1:+80603666 MS.gene021965:CDS
TTCTCGAATCCAGATGACGA+TGG 0.667427 7.1:+80603809 MS.gene021965:CDS
AGAGTTCCAATACCTCAGAA+GGG 0.673516 7.1:+80603947 MS.gene021965:CDS
ATTGGAACTCTAGATTGAGA+CGG 0.678295 7.1:-80603935 None:intergenic
GTATGTCCATCAAAAGACCA+AGG 0.686637 7.1:-80603427 None:intergenic
CAGGTCCATCAAAGTCACAG+TGG 0.749090 7.1:+80603879 MS.gene021965:CDS
CAGACTGCAGGGAAACAACG+TGG 0.749558 7.1:+80603556 MS.gene021965:CDS
TCTGCGACATACAACCAACA+GGG 0.750911 7.1:-80603537 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTTTTTTTTTTTTGA+AGG - chr7.1:80604056-80604075 None:intergenic 10.0%
!!! TTTATTTTTTTCAGTAATTA+CGG - chr7.1:80603978-80603997 None:intergenic 10.0%
!! TTATGCAAAATATTATTTGA+TGG - chr7.1:80605241-80605260 None:intergenic 15.0%
!! AATTGGAAAAGAAAAAGATT+AGG - chr7.1:80603367-80603386 None:intergenic 20.0%
!! ATATCACTAACATTTATAGT+GGG - chr7.1:80604237-80604256 None:intergenic 20.0%
!! ATTGGAAAAGAAAAAGATTA+GGG - chr7.1:80603366-80603385 None:intergenic 20.0%
!! CCAGAATTATTAACAATTAA+AGG - chr7.1:80604013-80604032 None:intergenic 20.0%
!! CCTTTAATTGTTAATAATTC+TGG + chr7.1:80604010-80604029 MS.gene021965:intron 20.0%
!! GAATTATTAACAATTAAAGG+AGG - chr7.1:80604010-80604029 None:intergenic 20.0%
!! TAACTATTGTGTTTATGATA+TGG + chr7.1:80605264-80605283 MS.gene021965:intron 20.0%
!!! ATATTATTTGATGGATAATC+TGG - chr7.1:80605232-80605251 None:intergenic 20.0%
! AAGTTTAAATACGAAAAGCT+TGG + chr7.1:80603728-80603747 MS.gene021965:CDS 25.0%
! ATATACATGGCATAAAAGTT+TGG + chr7.1:80604976-80604995 MS.gene021965:intron 25.0%
! CATATCACTAACATTTATAG+TGG - chr7.1:80604238-80604257 None:intergenic 25.0%
! TAAAAAACAGAAGTAAACCA+AGG + chr7.1:80604360-80604379 MS.gene021965:intron 25.0%
! TATACATGGCATAAAAGTTT+GGG + chr7.1:80604977-80604996 MS.gene021965:intron 25.0%
! TATCACTAACATTTATAGTG+GGG - chr7.1:80604236-80604255 None:intergenic 25.0%
! TGACTCAACATTAAAGAAAA+GGG + chr7.1:80604191-80604210 MS.gene021965:intron 25.0%
! TTATCTAAACCTCCTATTAA+TGG + chr7.1:80604144-80604163 MS.gene021965:intron 25.0%
! TTGACTCAACATTAAAGAAA+AGG + chr7.1:80604190-80604209 MS.gene021965:intron 25.0%
!!! CGATTCACATCATTTTTTAT+CGG + chr7.1:80604386-80604405 MS.gene021965:intron 25.0%
!!! CTTTACGTTTTGAAAATTCA+TGG + chr7.1:80605164-80605183 MS.gene021965:CDS 25.0%
!!! GTTTACTTCTGTTTTTTAGT+TGG - chr7.1:80604358-80604377 None:intergenic 25.0%
AAAATCAGCTTTCCACATAA+CGG - chr7.1:80604648-80604667 None:intergenic 30.0%
ATGAAGAAGATCAAAGTGAA+GGG + chr7.1:80603689-80603708 MS.gene021965:CDS 30.0%
CCAGCTATCAAAAACAAATT+AGG + chr7.1:80604119-80604138 MS.gene021965:intron 30.0%
GATGGACATACTTTGATTAT+CGG + chr7.1:80603439-80603458 MS.gene021965:CDS 30.0%
GCAAAATGAGTATCTTATGT+TGG + chr7.1:80604435-80604454 MS.gene021965:intron 30.0%
GTATTTAAACTTCACTTCGT+GGG - chr7.1:80603720-80603739 None:intergenic 30.0%
TCAATTAGCAATACAATGTC+CGG - chr7.1:80604527-80604546 None:intergenic 30.0%
TGATCAAGTTTGAGCAATAA+TGG - chr7.1:80605118-80605137 None:intergenic 30.0%
TGGAAGGATATCAATATACA+TGG + chr7.1:80604963-80604982 MS.gene021965:intron 30.0%
! TCATTTACTGTTGATAGAGA+TGG + chr7.1:80604605-80604624 MS.gene021965:intron 30.0%
!! AAAGAAGTTTGTTATGCTCT+TGG + chr7.1:80604572-80604591 MS.gene021965:intron 30.0%
!!! CCTAATTTGTTTTTGATAGC+TGG - chr7.1:80604122-80604141 None:intergenic 30.0%
!!! CTGTTTTTTAGTTGGTTGAT+TGG - chr7.1:80604350-80604369 None:intergenic 30.0%
AAAACTCTTTCCATGTCTCT+CGG - chr7.1:80603397-80603416 None:intergenic 35.0%
AAACAACGTGGTGATTTCAT+CGG + chr7.1:80603568-80603587 MS.gene021965:CDS 35.0%
AAACGATCCATGGTGTATTA+TGG + chr7.1:80604823-80604842 MS.gene021965:intron 35.0%
AACGATCCATGGTGTATTAT+GGG + chr7.1:80604824-80604843 MS.gene021965:intron 35.0%
AATGATGTGAATCGTTTCCT+TGG - chr7.1:80604380-80604399 None:intergenic 35.0%
ACGATTAACTATTGCAGAAG+AGG + chr7.1:80603168-80603187 MS.gene021965:CDS 35.0%
AGCATTGCATACTTCTTCAT+GGG + chr7.1:80605033-80605052 MS.gene021965:intron 35.0%
ATAGCTTCTCCTTCATCATA+CGG - chr7.1:80603297-80603316 None:intergenic 35.0%
ATTGGAACTCTAGATTGAGA+CGG - chr7.1:80603938-80603957 None:intergenic 35.0%
ATTTCAGCACCATTAATAGG+AGG - chr7.1:80604156-80604175 None:intergenic 35.0%
CGTATTTAAACTTCACTTCG+TGG - chr7.1:80603721-80603740 None:intergenic 35.0%
GATGAAGAAGATCAAAGTGA+AGG + chr7.1:80603688-80603707 MS.gene021965:CDS 35.0%
GGAACATTCTGTTATTACTG+TGG + chr7.1:80603749-80603768 MS.gene021965:CDS 35.0%
GTGTTTATGATATGGAGTCA+TGG + chr7.1:80605272-80605291 MS.gene021965:intron 35.0%
GTTGATTGGATCAATTCCAT+TGG - chr7.1:80604336-80604355 None:intergenic 35.0%
TGATAGCTGGCAAGAAAATA+GGG - chr7.1:80604109-80604128 None:intergenic 35.0%
TGATTTCATCGGTGAGTTTA+TGG + chr7.1:80603579-80603598 MS.gene021965:intron 35.0%
TGCATTTCAGCACCATTAAT+AGG - chr7.1:80604159-80604178 None:intergenic 35.0%
TTTAAACTAGGAACTGCCTT+CGG - chr7.1:80604482-80604501 None:intergenic 35.0%
! AGGAGAAGCTATCAGAATTT+TGG + chr7.1:80603305-80603324 MS.gene021965:CDS 35.0%
! ATTACGATTGATGACTCTAC+AGG + chr7.1:80603205-80603224 MS.gene021965:CDS 35.0%
! CATAAGATACTCATTTTGCC+CGG - chr7.1:80604434-80604453 None:intergenic 35.0%
! CGAACAAGGTCTTTTAAACT+AGG - chr7.1:80604494-80604513 None:intergenic 35.0%
! TTGATAGCTGGCAAGAAAAT+AGG - chr7.1:80604110-80604129 None:intergenic 35.0%
!!! ATGGAAAGAGTTTTGAAGCA+GGG + chr7.1:80603403-80603422 MS.gene021965:CDS 35.0%
AAACCATTGTAAAGCCATGC+AGG - chr7.1:80604902-80604921 None:intergenic 40.0%
ACGATCCATGGTGTATTATG+GGG + chr7.1:80604825-80604844 MS.gene021965:intron 40.0%
ACTTTCTGAGCACATACATG+AGG + chr7.1:80603627-80603646 MS.gene021965:intron 40.0%
AGAGTTCCAATACCTCAGAA+GGG + chr7.1:80603947-80603966 MS.gene021965:CDS 40.0%
AGTAGCCCCAAAATGAAGTA+AGG - chr7.1:80604745-80604764 None:intergenic 40.0%
ATCGTTTGACATAGATGCCA+AGG - chr7.1:80604810-80604829 None:intergenic 40.0%
ATCTTCTTCATCCGCATCAA+TGG - chr7.1:80603680-80603699 None:intergenic 40.0%
ATTACGGAATTACCCTTCTG+AGG - chr7.1:80603962-80603981 None:intergenic 40.0%
ATTCTTTCATCCGAGAGACA+TGG + chr7.1:80603384-80603403 MS.gene021965:CDS 40.0%
CATCTATGTCAAACGATCCA+TGG + chr7.1:80604813-80604832 MS.gene021965:intron 40.0%
CCAAACTTTGTCGACATGAT+CGG + chr7.1:80605196-80605215 MS.gene021965:CDS 40.0%
CGATCATGTCGACAAAGTTT+GGG - chr7.1:80605198-80605217 None:intergenic 40.0%
CTACTAGACATGCTATTGGA+AGG + chr7.1:80604947-80604966 MS.gene021965:intron 40.0%
GAGTCATTAGAGGTAGGATT+TGG - chr7.1:80604288-80604307 None:intergenic 40.0%
GTATGTCCATCAAAAGACCA+AGG - chr7.1:80603430-80603449 None:intergenic 40.0%
GTTACAGAGTCATTAGAGGT+AGG - chr7.1:80604294-80604313 None:intergenic 40.0%
TAGAGTTCCAATACCTCAGA+AGG + chr7.1:80603946-80603965 MS.gene021965:CDS 40.0%
TAGCTTCTCCTTCATCATAC+GGG - chr7.1:80603296-80603315 None:intergenic 40.0%
TCAAAACGTAAAGTGCGCTT+CGG - chr7.1:80605157-80605176 None:intergenic 40.0%
TCATGAACTTGCACCCAATA+GGG - chr7.1:80603514-80603533 None:intergenic 40.0%
TGAGCACATACATGAGGATA+CGG + chr7.1:80603633-80603652 MS.gene021965:intron 40.0%
TGCTCTACTAGACATGCTAT+TGG + chr7.1:80604943-80604962 MS.gene021965:intron 40.0%
TGGATCAATTCCATTGGTGT+AGG - chr7.1:80604330-80604349 None:intergenic 40.0%
TGGCAAGAAAATAGGGATTC+CGG - chr7.1:80604102-80604121 None:intergenic 40.0%
TGTCTCTCGGATGAAAGAAT+TGG - chr7.1:80603384-80603403 None:intergenic 40.0%
TGTTATTACTGTGGCATGCT+CGG + chr7.1:80603758-80603777 MS.gene021965:CDS 40.0%
TTAAACTAGGAACTGCCTTC+GGG - chr7.1:80604481-80604500 None:intergenic 40.0%
TTTGCAGTAGCACGAAAGTT+TGG - chr7.1:80605313-80605332 None:intergenic 40.0%
! AGCTGAAGCCTTTTCAAAAC+CGG + chr7.1:80604080-80604099 MS.gene021965:intron 40.0%
! ATAGGGCATGGTTTTCTTCT+TGG - chr7.1:80603234-80603253 None:intergenic 40.0%
! GAGCATTGCATACTTCTTCA+TGG + chr7.1:80605032-80605051 MS.gene021965:intron 40.0%
! GTGCTACTGCAAACAATTTG+AGG + chr7.1:80605320-80605339 MS.gene021965:CDS 40.0%
! TAATGGTGCTGAAATGCATG+AGG + chr7.1:80604161-80604180 MS.gene021965:intron 40.0%
! TTGATAGCCACTTTACAGAC+AGG - chr7.1:80603334-80603353 None:intergenic 40.0%
!! GAATTACCCTTCTGAGGTAT+TGG - chr7.1:80603956-80603975 None:intergenic 40.0%
!! GCTTCATGAAGAAGGTGTTA+AGG + chr7.1:80603901-80603920 MS.gene021965:CDS 40.0%
!!! CATGGAAAGAGTTTTGAAGC+AGG + chr7.1:80603402-80603421 MS.gene021965:CDS 40.0%
!!! TAGGGATTCCGGTTTTGAAA+AGG - chr7.1:80604091-80604110 None:intergenic 40.0%
AAGTCCCCCATAATACACCA+TGG - chr7.1:80604833-80604852 None:intergenic 45.0%
AGAAAACCATGCCCTATGCT+TGG + chr7.1:80603237-80603256 MS.gene021965:CDS 45.0%
AGAATCTCCCAACCAAGCAT+AGG - chr7.1:80603252-80603271 None:intergenic 45.0%
AGGTTAATCAGACGAGCTGA+GGG - chr7.1:80605070-80605089 None:intergenic 45.0%
ATCTTATGTTGGAACTGCCG+AGG + chr7.1:80604446-80604465 MS.gene021965:intron 45.0%
ATTATCGGACTGCTTCAGCA+AGG + chr7.1:80603454-80603473 MS.gene021965:CDS 45.0%
CAATAGGGTACATGGTTGAG+GGG - chr7.1:80603499-80603518 None:intergenic 45.0%
CCAATAGGGTACATGGTTGA+GGG - chr7.1:80603500-80603519 None:intergenic 45.0%
CCGATCATGTCGACAAAGTT+TGG - chr7.1:80605199-80605218 None:intergenic 45.0%
CCTCAACCATGTACCCTATT+GGG + chr7.1:80603498-80603517 MS.gene021965:CDS 45.0%
CCTTGTTCGCGTCTATAAAC+CGG + chr7.1:80604505-80604524 MS.gene021965:intron 45.0%
CGATCCATGGTGTATTATGG+GGG + chr7.1:80604826-80604845 MS.gene021965:intron 45.0%
CGTCATCTGGATTCGAGAAT+AGG - chr7.1:80603808-80603827 None:intergenic 45.0%
CTTACCAGTGACGATAAACG+CGG + chr7.1:80604863-80604882 MS.gene021965:intron 45.0%
CTTGGTTGGGAGATTCTTGA+CGG + chr7.1:80603255-80603274 MS.gene021965:CDS 45.0%
GAATCTCCCAACCAAGCATA+GGG - chr7.1:80603251-80603270 None:intergenic 45.0%
GAGCACATACATGAGGATAC+GGG + chr7.1:80603634-80603653 MS.gene021965:intron 45.0%
GCGTGTTACAGAGTCATTAG+AGG - chr7.1:80604298-80604317 None:intergenic 45.0%
GTCATGAACTTGCACCCAAT+AGG - chr7.1:80603515-80603534 None:intergenic 45.0%
TCACAGTGGCTTCATGAAGA+AGG + chr7.1:80603893-80603912 MS.gene021965:CDS 45.0%
TCTCCTTCATCATACGGGTT+CGG - chr7.1:80603291-80603310 None:intergenic 45.0%
TCTGCGACATACAACCAACA+GGG - chr7.1:80603540-80603559 None:intergenic 45.0%
TGAAGCCACTGTGACTTTGA+TGG - chr7.1:80603887-80603906 None:intergenic 45.0%
TTCATCATACGGGTTCGGAT+CGG - chr7.1:80603286-80603305 None:intergenic 45.0%
TTCTCGAATCCAGATGACGA+TGG + chr7.1:80603809-80603828 MS.gene021965:CDS 45.0%
TTGGCAACCTGTCTGTAAAG+TGG + chr7.1:80603324-80603343 MS.gene021965:CDS 45.0%
! ACTGGCGCCTTACTTCATTT+TGG + chr7.1:80604735-80604754 MS.gene021965:intron 45.0%
! AGACCTGCATGGCTTTACAA+TGG + chr7.1:80604896-80604915 MS.gene021965:intron 45.0%
! CTGGCGCCTTACTTCATTTT+GGG + chr7.1:80604736-80604755 MS.gene021965:intron 45.0%
! GTTGATAGAGATGGCAGAAG+TGG + chr7.1:80604614-80604633 MS.gene021965:intron 45.0%
! TGATGGATAATCTGGCCAGT+TGG - chr7.1:80605224-80605243 None:intergenic 45.0%
! TGGCGCCTTACTTCATTTTG+GGG + chr7.1:80604737-80604756 MS.gene021965:intron 45.0%
!!! CATTTTTTATCGGCAGAGCC+TGG + chr7.1:80604396-80604415 MS.gene021965:intron 45.0%
AACCATGCCCTATGCTTGGT+TGG + chr7.1:80603241-80603260 MS.gene021965:CDS 50.0%
AAGACCCAGAGAAAGGCAAC+TGG + chr7.1:80604717-80604736 MS.gene021965:intron 50.0%
ACCATGCCCTATGCTTGGTT+GGG + chr7.1:80603242-80603261 MS.gene021965:CDS 50.0%
ACTCTAGATTGAGACGGTGC+TGG - chr7.1:80603932-80603951 None:intergenic 50.0%
AGCTCGTCTGATTAACCTGG+TGG + chr7.1:80605072-80605091 MS.gene021965:intron 50.0%
AGTCATTCTTCAACTGCGCG+AGG - chr7.1:80605007-80605026 None:intergenic 50.0%
AGTTGCCTTTCTCTGGGTCT+TGG - chr7.1:80604718-80604737 None:intergenic 50.0%
ATCCAGATGACGATGGAGTC+CGG + chr7.1:80603816-80603835 MS.gene021965:CDS 50.0%
ATGACGATGGAGTCCGGTTA+TGG + chr7.1:80603822-80603841 MS.gene021965:CDS 50.0%
ATGTACGCAGGCCATTGATG+CGG + chr7.1:80603666-80603685 MS.gene021965:CDS 50.0%
CAAGTTCATGACGTCCCTGT+TGG + chr7.1:80603523-80603542 MS.gene021965:CDS 50.0%
CAGACCTTCGTGCAGATAAG+AGG + chr7.1:80603849-80603868 MS.gene021965:CDS 50.0%
CAGGTCCATCAAAGTCACAG+TGG + chr7.1:80603879-80603898 MS.gene021965:CDS 50.0%
CAGGTTAATCAGACGAGCTG+AGG - chr7.1:80605071-80605090 None:intergenic 50.0%
CCATTGGTGTAGGAGATGCA+AGG - chr7.1:80604320-80604339 None:intergenic 50.0%
CCCAATAGGGTACATGGTTG+AGG - chr7.1:80603501-80603520 None:intergenic 50.0%
CCCTCAACCATGTACCCTAT+TGG + chr7.1:80603497-80603516 MS.gene021965:CDS 50.0%
CCGGTTTATAGACGCGAACA+AGG - chr7.1:80604508-80604527 None:intergenic 50.0%
CCTTGCATCTCCTACACCAA+TGG + chr7.1:80604317-80604336 MS.gene021965:intron 50.0%
CGCGTTTATCGTCACTGGTA+AGG - chr7.1:80604865-80604884 None:intergenic 50.0%
CTCAGCTCGTCTGATTAACC+TGG + chr7.1:80605069-80605088 MS.gene021965:intron 50.0%
CTCTCCTCTTATCTGCACGA+AGG - chr7.1:80603856-80603875 None:intergenic 50.0%
CTCTCGTCGTAGACAGTCTT+GGG + chr7.1:80604772-80604791 MS.gene021965:intron 50.0%
CTTCGTGCAGATAAGAGGAG+AGG + chr7.1:80603854-80603873 MS.gene021965:CDS 50.0%
CTTGCACCCAATAGGGTACA+TGG - chr7.1:80603507-80603526 None:intergenic 50.0%
GAAGGTCTGAGCTCCATAAC+CGG - chr7.1:80603838-80603857 None:intergenic 50.0%
GATAGAGATGGCAGAAGTGG+TGG + chr7.1:80604617-80604636 MS.gene021965:intron 50.0%
GATCCGAACCCGTATGATGA+AGG + chr7.1:80603285-80603304 MS.gene021965:CDS 50.0%
GTCTGCGACATACAACCAAC+AGG - chr7.1:80603541-80603560 None:intergenic 50.0%
GTTGTATGTCGCAGACTGCA+GGG + chr7.1:80603545-80603564 MS.gene021965:CDS 50.0%
TAGATGCCAAGGAGCGAAGT+AGG - chr7.1:80604799-80604818 None:intergenic 50.0%
TCGACATGATCGGTACCAAC+TGG + chr7.1:80605206-80605225 MS.gene021965:intron 50.0%
TCGATCCAAGACCCAGAGAA+AGG + chr7.1:80604710-80604729 MS.gene021965:intron 50.0%
! AGATACTCATTTTGCCCGGC+AGG - chr7.1:80604430-80604449 None:intergenic 50.0%
! GGGTCTTAGTTGATGTACGC+AGG + chr7.1:80603654-80603673 MS.gene021965:intron 50.0%
!! CAGGGTCCTTGGTCTTTTGA+TGG + chr7.1:80603421-80603440 MS.gene021965:CDS 50.0%
!!! GAGTTTTGAAGCAGGGTCCT+TGG + chr7.1:80603410-80603429 MS.gene021965:CDS 50.0%
AACCGGACTCCATCGTCATC+TGG - chr7.1:80603821-80603840 None:intergenic 55.0%
ACCAGTGACGATAAACGCGG+TGG + chr7.1:80604866-80604885 MS.gene021965:intron 55.0%
ATGGTTGAGGGGAACCGTTG+TGG - chr7.1:80603488-80603507 None:intergenic 55.0%
CAGACTGCAGGGAAACAACG+TGG + chr7.1:80603556-80603575 MS.gene021965:CDS 55.0%
CGCTTCGGTCGTATATGCTC+GGG - chr7.1:80605142-80605161 None:intergenic 55.0%
CTGTCTACGACGAGAGCTGT+CGG - chr7.1:80604768-80604787 None:intergenic 55.0%
GATCAGATGTTGCTGCCACC+AGG - chr7.1:80605090-80605109 None:intergenic 55.0%
GCAAGGCAGTGTTCCCACAA+CGG + chr7.1:80603471-80603490 MS.gene021965:CDS 55.0%
GCAGATAAGAGGAGAGGAGC+AGG + chr7.1:80603860-80603879 MS.gene021965:CDS 55.0%
GCGCTTCGGTCGTATATGCT+CGG - chr7.1:80605143-80605162 None:intergenic 55.0%
GCTCTCGTCGTAGACAGTCT+TGG + chr7.1:80604771-80604790 MS.gene021965:intron 55.0%
GGTTGTATGTCGCAGACTGC+AGG + chr7.1:80603544-80603563 MS.gene021965:CDS 55.0%
GTGGTGGTCTCACCGTTATG+TGG + chr7.1:80604633-80604652 MS.gene021965:intron 55.0%
TCATACGGGTTCGGATCGGA+CGG - chr7.1:80603282-80603301 None:intergenic 55.0%
TCCCAACCAAGCATAGGGCA+TGG - chr7.1:80603246-80603265 None:intergenic 55.0%
TGACGATAAACGCGGTGGCT+CGG + chr7.1:80604871-80604890 MS.gene021965:intron 55.0%
TGGTTGAGGGGAACCGTTGT+GGG - chr7.1:80603487-80603506 None:intergenic 55.0%
TTGGGACCTACTTCGCTCCT+TGG + chr7.1:80604790-80604809 MS.gene021965:intron 55.0%
AGGCGCCAGTTGCCTTTCTC+TGG - chr7.1:80604725-80604744 None:intergenic 60.0%
ATGTTGGAACTGCCGAGGCC+TGG + chr7.1:80604451-80604470 MS.gene021965:intron 60.0%
GCCACCGCGTTTATCGTCAC+TGG - chr7.1:80604870-80604889 None:intergenic 60.0%
GGCGCCAGTTGCCTTTCTCT+GGG - chr7.1:80604724-80604743 None:intergenic 60.0%
TGTTGGAACTGCCGAGGCCT+GGG + chr7.1:80604452-80604471 MS.gene021965:intron 60.0%
! GTGGCTCGGAAAGACCTGCA+TGG + chr7.1:80604885-80604904 MS.gene021965:intron 60.0%
! TCATTTTGCCCGGCAGGCCT+GGG - chr7.1:80604424-80604443 None:intergenic 60.0%
ATCGGCAGAGCCTGGTTCCC+AGG + chr7.1:80604404-80604423 MS.gene021965:intron 65.0%
GAACTGCCTTCGGGTGTCCC+AGG - chr7.1:80604472-80604491 None:intergenic 65.0%
! CTCATTTTGCCCGGCAGGCC+TGG - chr7.1:80604425-80604444 None:intergenic 65.0%
AGCCTGGTTCCCAGGCCTGC+CGG + chr7.1:80604412-80604431 MS.gene021965:intron 70.0%
CCTTCGGGTGTCCCAGGCCT+CGG - chr7.1:80604466-80604485 None:intergenic 70.0%
CCGAGGCCTGGGACACCCGA+AGG + chr7.1:80604463-80604482 MS.gene021965:intron 75.0%
GCCTGGTTCCCAGGCCTGCC+GGG + chr7.1:80604413-80604432 MS.gene021965:intron 75.0%
! GCCCGGCAGGCCTGGGAACC+AGG - chr7.1:80604417-80604436 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 80603163 80605353 80603163 ID=MS.gene021965
chr7.1 mRNA 80603163 80605353 80603163 ID=MS.gene021965.t1;Parent=MS.gene021965
chr7.1 exon 80603163 80603589 80603163 ID=MS.gene021965.t1.exon1;Parent=MS.gene021965.t1
chr7.1 CDS 80603163 80603589 80603163 ID=cds.MS.gene021965.t1;Parent=MS.gene021965.t1
chr7.1 exon 80603663 80603968 80603663 ID=MS.gene021965.t1.exon2;Parent=MS.gene021965.t1
chr7.1 CDS 80603663 80603968 80603663 ID=cds.MS.gene021965.t1;Parent=MS.gene021965.t1
chr7.1 exon 80605074 80605217 80605074 ID=MS.gene021965.t1.exon3;Parent=MS.gene021965.t1
chr7.1 CDS 80605074 80605217 80605074 ID=cds.MS.gene021965.t1;Parent=MS.gene021965.t1
chr7.1 exon 80605289 80605353 80605289 ID=MS.gene021965.t1.exon4;Parent=MS.gene021965.t1
chr7.1 CDS 80605289 80605353 80605289 ID=cds.MS.gene021965.t1;Parent=MS.gene021965.t1
Gene Sequence

>MS.gene021965

ATGGAACGATTAACTATTGCAGAAGAGGAAGACGAAATCGAGATTACGATTGATGACTCTACAGGAAACCAAGAAGAAAACCATGCCCTATGCTTGGTTGGGAGATTCTTGACGGACCGTCCGATCCGAACCCGTATGATGAAGGAGAAGCTATCAGAATTTTGGCAACCTGTCTGTAAAGTGGCTATCAAAGAGATTAACCCTAATCTTTTTCTTTTCCAATTCTTTCATCCGAGAGACATGGAAAGAGTTTTGAAGCAGGGTCCTTGGTCTTTTGATGGACATACTTTGATTATCGGACTGCTTCAGCAAGGCAGTGTTCCCACAACGGTTCCCCTCAACCATGTACCCTATTGGGTGCAAGTTCATGACGTCCCTGTTGGTTGTATGTCGCAGACTGCAGGGAAACAACGTGGTGATTTCATCGGTGAGTTTATGGAATATGATGAAAAAAATAACTCTTAACTTTCTGAGCACATACATGAGGATACGGGTCTTAGTTGATGTACGCAGGCCATTGATGCGGATGAAGAAGATCAAAGTGAAGGGAAACTCCCACGAAGTGAAGTTTAAATACGAAAAGCTTGGAACATTCTGTTATTACTGTGGCATGCTCGGACACATAGAAGATTTCTGCAAGAGCCTATTCTCGAATCCAGATGACGATGGAGTCCGGTTATGGAGCTCAGACCTTCGTGCAGATAAGAGGAGAGGAGCAGGTCCATCAAAGTCACAGTGGCTTCATGAAGAAGGTGTTAAGGCATCACCAGCACCGTCTCAATCTAGAGTTCCAATACCTCAGAAGGGTAATTCCGTAATTACTGAAAAAAATAAATATTCAAAGCCTCCTTTAATTGTTAATAATTCTGGTGCTAAAATCTCTCTAGCTTCCTTCAAAAAAAAAAAAAAATCTCTCTAGCTGAAGCCTTTTCAAAACCGGAATCCCTATTTTCTTGCCAGCTATCAAAAACAAATTAGGAATTATCTAAACCTCCTATTAATGGTGCTGAAATGCATGAGGAAGCTATTGACTCAACATTAAAGAAAAGGGCACGTATTAATGAAGATGACCCCACTATAAATGTTAGTGATATGCATGAGAATATTAGTCATAAAGTGCATCCAAATCCTACCTCTAATGACTCTGTAACACGCCTTGCATCTCCTACACCAATGGAATTGATCCAATCAACCAACTAAAAAACAGAAGTAAACCAAGGAAACGATTCACATCATTTTTTATCGGCAGAGCCTGGTTCCCAGGCCTGCCGGGCAAAATGAGTATCTTATGTTGGAACTGCCGAGGCCTGGGACACCCGAAGGCAGTTCCTAGTTTAAAAGACCTTGTTCGCGTCTATAAACCGGACATTGTATTGCTAATTGAAACTTTAGTACATTCAAACAAAATTAAAGAAGTTTGTTATGCTCTTGGCTATGACTTTTCATTTACTGTTGATAGAGATGGCAGAAGTGGTGGTCTCACCGTTATGTGGAAAGCTGATTTTAAATGTAATATCATTAATTTTTCTACAAACTATATCAACTTATCGATCCAAGACCCAGAGAAAGGCAACTGGCGCCTTACTTCATTTTGGGGCTACTCCGACAGCTCTCGTCGTAGACAGTCTTGGGACCTACTTCGCTCCTTGGCATCTATGTCAAACGATCCATGGTGTATTATGGGGGACTTTAATGATCTCCTTACCAGTGACGATAAACGCGGTGGCTCGGAAAGACCTGCATGGCTTTACAATGGTTTTTGTTGTGCTGTTAATGATTGTGCTCTACTAGACATGCTATTGGAAGGATATCAATATACATGGCATAAAAGTTTGGGAACACCTCGCGCAGTTGAAGAATGACTTGATCGAGCATTGCATACTTCTTCATGGGCTTCTTTGTTTCCCTCAGCTCGTCTGATTAACCTGGTGGCAGCAACATCTGATCATTCTCCATTATTGCTCAAACTTGATCAGCCCGAGCATATACGACCGAAGCGCACTTTACGTTTTGAAAATTCATGGTTGCTTGACCCAAACTTTGTCGACATGATCGGTACCAACTGGCCAGATTATCCATCAAATAATATTTTGCATAAATTTAACTATTGTGTTTATGATATGGAGTCATGGAGCAAAGCAAACATGCCAAACTTTCGTGCTACTGCAAACAATTTGAGGAGAGAAATTGA
Protein sequence

>MS.gene021965.t1

MERLTIAEEEDEIEITIDDSTGNQEENHALCLVGRFLTDRPIRTRMMKEKLSEFWQPVCKVAIKEINPNLFLFQFFHPRDMERVLKQGPWSFDGHTLIIGLLQQGSVPTTVPLNHVPYWVQVHDVPVGCMSQTAGKQRGDFIVDVRRPLMRMKKIKVKGNSHEVKFKYEKLGTFCYYCGMLGHIEDFCKSLFSNPDDDGVRLWSSDLRADKRRGAGPSKSQWLHEEGVKASPAPSQSRVPIPQKARLINLVAATSDHSPLLLKLDQPEHIRPKRTLRFENSWLLDPNFVDMIVMEQSKHAKLSCYCKQFEERN