AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048706

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048706.t1 MTR_3g053920 53.398 309 113 6 1 307 1 280 8.78e-97 290
MS.gene048706.t1 MTR_2g061500 73.643 129 34 0 1 129 1 129 6.91e-67 208
MS.gene048706.t1 MTR_4g103530 48.649 222 74 3 55 276 1 182 7.62e-62 197
MS.gene048706.t1 MTR_7g011710 72.941 85 23 0 55 139 1 85 1.71e-40 141
MS.gene048706.t1 MTR_6g033215 34.010 197 123 3 5 199 103 294 4.71e-37 136
MS.gene048706.t1 MTR_0010s0370 33.333 168 100 4 21 177 11 177 1.82e-27 107
MS.gene048706.t1 MTR_0010s0350 33.333 168 100 4 21 177 11 177 1.82e-27 107
MS.gene048706.t1 MTR_8g463110 56.923 130 43 4 251 376 1 121 9.11e-23 100
MS.gene048706.t1 MTR_1g036720 32.653 98 64 1 11 106 7 104 9.07e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048706.t1 AT5G36228 25.490 204 137 3 36 226 39 240 4.13e-15 76.6
MS.gene048706.t1 AT3G31430 27.962 211 135 5 5 210 108 306 5.00e-15 75.9
MS.gene048706.t1 AT2G17920 27.329 161 109 4 55 211 58 214 6.10e-15 75.5
MS.gene048706.t1 AT2G13450 26.396 197 135 5 18 210 23 213 1.24e-13 72.4
MS.gene048706.t1 AT2G41590 26.087 161 111 3 55 211 58 214 5.02e-13 70.1
MS.gene048706.t1 AT3G57587 25.175 143 103 2 71 211 74 214 1.10e-12 69.3
MS.gene048706.t1 AT2G02103 26.168 214 140 6 8 211 9 214 4.21e-12 67.8
MS.gene048706.t1 AT5G25200 25.701 214 141 6 8 211 9 214 4.27e-12 67.4
MS.gene048706.t1 AT5G18636 25.701 214 141 6 8 211 9 214 4.27e-12 67.4

Find 121 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCTGCTGATGGGGTTA+TGG 0.189953 3.2:-60982978 MS.gene048706:CDS
GTTCCTGGTTGGAACAAATT+TGG 0.216776 3.2:+60983370 None:intergenic
CTGCTTGATCGGTCGTGTTT+TGG 0.246456 3.2:-60984049 MS.gene048706:CDS
CATTGAATCACCTGGACATT+TGG 0.249024 3.2:-60983804 MS.gene048706:CDS
TGTTACAGGTGTGGCATTCT+TGG 0.257369 3.2:-60983547 MS.gene048706:CDS
CATCAAGTTTGTGGTGAAAC+TGG 0.304253 3.2:+60983920 None:intergenic
TGTTACTGTACCACTGAAAA+AGG 0.308378 3.2:-60983641 MS.gene048706:CDS
CAATGTCGGCAGCTAGGTTA+TGG 0.310373 3.2:+60984094 None:intergenic
CAGGTCCACGGTTTGCCCTT+TGG 0.316867 3.2:-60983778 MS.gene048706:CDS
TTTGCTGCTGATGGGGTTAT+GGG 0.324260 3.2:-60982977 MS.gene048706:CDS
ATTTCTTCCTTTGCTGCTGA+TGG 0.329831 3.2:-60982986 MS.gene048706:CDS
GCTTGCCTGGTTTCCATGCT+CGG 0.336051 3.2:+60983983 None:intergenic
TGCTATTCTTGCTATTAAAC+AGG 0.348713 3.2:-60983269 MS.gene048706:CDS
CAAGGAATTGGCAGTTTCCT+TGG 0.351997 3.2:-60983733 MS.gene048706:CDS
ATTGAATCACCTGGACATTT+GGG 0.353010 3.2:-60983803 MS.gene048706:CDS
CCAATTCCTTGACCAACCTT+TGG 0.354457 3.2:+60983745 None:intergenic
CCAAAGGTTGGTCAAGGAAT+TGG 0.363573 3.2:-60983745 MS.gene048706:CDS
TTCTCATATTTAAACAAAAC+AGG 0.373656 3.2:+60983583 None:intergenic
TTTCTTCCTTTGCTGCTGAT+GGG 0.379088 3.2:-60982985 MS.gene048706:CDS
GTTATGGGAAATGATGTAAT+AGG 0.406704 3.2:-60982962 MS.gene048706:CDS
CCCACGAACCTTAACATTGA+TGG 0.418920 3.2:-60984144 MS.gene048706:CDS
CAGGGCCGCTCCATGGTGCT+TGG 0.421634 3.2:-60983133 MS.gene048706:CDS
AACACTGCTGCTGTTCCTGC+AGG 0.428988 3.2:-60983334 MS.gene048706:CDS
TGACAACTTTCATATAGTTA+TGG 0.430441 3.2:-60983863 MS.gene048706:CDS
GACCGATCAAGCAGTGTTCA+AGG 0.432003 3.2:+60984058 None:intergenic
TTACGGCCAGCAGAGGTTCC+TGG 0.439169 3.2:+60983355 None:intergenic
GCCTCTTTCTCTCCAAGTGA+TGG 0.439852 3.2:-60983079 MS.gene048706:CDS
AGGAACTGTGAATGGTATTA+CGG 0.440470 3.2:+60983689 None:intergenic
GTGTGGCATTCTTGGTCATT+CGG 0.441108 3.2:-60983539 MS.gene048706:CDS
GCGGCCCTGCATCAGATTAG+AGG 0.443977 3.2:+60983147 None:intergenic
TTCCAACCAGGAACCTCTGC+TGG 0.444799 3.2:-60983361 MS.gene048706:CDS
CTCGACCTCTAATCTGATGC+AGG 0.451492 3.2:-60983152 MS.gene048706:CDS
AATGTCGGCAGCTAGGTTAT+GGG 0.458372 3.2:+60984095 None:intergenic
GCTGTTTCGTTCACTACTGC+TGG 0.458538 3.2:-60983103 MS.gene048706:CDS
TGATTCATCATACATAGGAT+TGG 0.459543 3.2:+60982896 None:intergenic
CTTGCCTGGTTTCCATGCTC+GGG 0.461634 3.2:+60983984 None:intergenic
CACGAGCAACATCAAGTTTG+TGG 0.464404 3.2:+60983911 None:intergenic
ACCATCAATGTTAAGGTTCG+TGG 0.472453 3.2:+60984143 None:intergenic
ATCCTTGAACACTGCTTGAT+CGG 0.474216 3.2:-60984060 MS.gene048706:CDS
GGGTAAGACCATCAATGTTA+AGG 0.477421 3.2:+60984136 None:intergenic
GACATTTGGGTGCAGGTCCA+CGG 0.479487 3.2:-60983790 MS.gene048706:CDS
ATGATTGTCACACGCTTGCC+TGG 0.479590 3.2:+60983970 None:intergenic
GGGTCAAACCCTCATCAGCC+AGG 0.480642 3.2:+60984115 None:intergenic
CAGGAACAGCAGCAGTGTTA+CGG 0.482369 3.2:+60983338 None:intergenic
TTCTCTCCAAGTGATGGGAA+TGG 0.482921 3.2:-60983073 MS.gene048706:CDS
ACATTTGATTCATCATACAT+AGG 0.485391 3.2:+60982891 None:intergenic
TTCTTCCTTTGCTGCTGATG+GGG 0.487880 3.2:-60982984 MS.gene048706:CDS
TTTGGACTCGGCATAGCATC+AGG 0.490313 3.2:+60983388 None:intergenic
CAAATGTCCAGGTGATTCAA+TGG 0.494410 3.2:+60983805 None:intergenic
GAGGTCGAGGCACCTGAAGA+TGG 0.496446 3.2:+60983166 None:intergenic
CTCGGCATAGCATCAGGTAT+AGG 0.498593 3.2:+60983394 None:intergenic
CTTTGGATTCATTCAACCAA+AGG 0.499724 3.2:-60983761 MS.gene048706:CDS
TGGTCTTACCCTGGCTGATG+AGG 0.501493 3.2:-60984124 MS.gene048706:CDS
CACTGTTCCATTGAATCACC+TGG 0.504618 3.2:-60983812 MS.gene048706:CDS
TCTGATGCAGGGCCGCTCCA+TGG 0.506005 3.2:-60983140 MS.gene048706:CDS
GTTAAGGTTCGTGGGATCCA+TGG 0.509655 3.2:+60984152 None:intergenic
AGCGGCTTTGATTTCTCGAT+CGG 0.509809 3.2:+60984026 None:intergenic
CCCATCACTTGGAGAGAAAG+AGG 0.513257 3.2:+60983078 None:intergenic
CCTCTTTCTCTCCAAGTGAT+GGG 0.513383 3.2:-60983078 MS.gene048706:CDS
AGGTCGAGGCACCTGAAGAT+GGG 0.513438 3.2:+60983167 None:intergenic
TTAAATCCATTCCCATCACT+TGG 0.516983 3.2:+60983067 None:intergenic
GGATCTGATGTTAGTGCTGA+GGG 0.517182 3.2:-60982941 MS.gene048706:CDS
TCACCTGGACATTTGGGTGC+AGG 0.517621 3.2:-60983797 MS.gene048706:CDS
GTGTGTTGGACGAGGGTCCA+TGG 0.521077 3.2:-60983891 MS.gene048706:CDS
TGTTGCTCGTGTGTTGGACG+AGG 0.522450 3.2:-60983899 MS.gene048706:CDS
GGATTCATTCAACCAAAGGT+TGG 0.527032 3.2:-60983757 MS.gene048706:CDS
CATTCTTGGTCATTCGGACA+AGG 0.529981 3.2:-60983533 MS.gene048706:intron
GGTCTTACCCTGGCTGATGA+GGG 0.530738 3.2:-60984123 MS.gene048706:CDS
ATTTAATGATGATGCTGGTT+CGG 0.531645 3.2:-60983050 MS.gene048706:CDS
AGGAAGAAATTCCATTCTGA+AGG 0.535299 3.2:+60982999 None:intergenic
GGACCTGCACCCAAATGTCC+AGG 0.535494 3.2:+60983794 None:intergenic
ATGTCCCGAGCATGGAAACC+AGG 0.539941 3.2:-60983988 MS.gene048706:CDS
TCGCAGAAAGGAACTGTGAA+TGG 0.540010 3.2:+60983681 None:intergenic
GGTTGGAACAAATTTGGACT+CGG 0.545594 3.2:+60983376 None:intergenic
AAATTGTGTAAATTCCCTGC+AGG 0.550807 3.2:+60983319 None:intergenic
AATGGATTTAATGATGATGC+TGG 0.552999 3.2:-60983055 MS.gene048706:CDS
GATCAAGCAGTGTTCAAGGA+TGG 0.553362 3.2:+60984062 None:intergenic
CATAACCCCATCAGCAGCAA+AGG 0.553704 3.2:+60982979 None:intergenic
ATTCAACCAAAGGTTGGTCA+AGG 0.554054 3.2:-60983751 MS.gene048706:CDS
GTTATGGAACGTATTGCTCC+TGG 0.556965 3.2:-60983847 MS.gene048706:CDS
TTTGGTTGAATGAATCCAAA+GGG 0.557289 3.2:+60983763 None:intergenic
ATCAAGCAGTGTTCAAGGAT+GGG 0.561405 3.2:+60984063 None:intergenic
CCTTTCTGCGACTCAAAGTG+AGG 0.562979 3.2:-60983669 MS.gene048706:CDS
ACTTGATGTTGCTCGTGTGT+TGG 0.565320 3.2:-60983905 MS.gene048706:CDS
AGGACTCAATGTCGGCAGCT+AGG 0.567310 3.2:+60984088 None:intergenic
TTGTTTAAATATGAGAAGCT+TGG 0.568801 3.2:-60983577 MS.gene048706:CDS
CCTCACTTTGAGTCGCAGAA+AGG 0.570823 3.2:+60983669 None:intergenic
CTGCATCAGATTAGAGGTCG+AGG 0.578654 3.2:+60983153 None:intergenic
CCATCAATGTTAAGGTTCGT+GGG 0.580051 3.2:+60984144 None:intergenic
ACAGTGGTCGAGACAACACC+AGG 0.584103 3.2:+60983829 None:intergenic
GTATGATGAATCAAATGTAA+TGG 0.590945 3.2:-60982886 None:intergenic
CTTTGGTTGAATGAATCCAA+AGG 0.593606 3.2:+60983762 None:intergenic
CGTAAGAACCATTGTTAGCA+CGG 0.593728 3.2:+60983608 None:intergenic
GTGAACGCATGTCCCGAGCA+TGG 0.594541 3.2:-60983996 MS.gene048706:CDS
TGTGTGCTTGCCCTTCAGAA+TGG 0.596198 3.2:-60983010 MS.gene048706:CDS
AGCAGTGTTACGGCCAGCAG+AGG 0.596556 3.2:+60983348 None:intergenic
TGTCCTCGCTGCTCAGACTG+CGG 0.600118 3.2:-60983245 MS.gene048706:CDS
GCAATCCAAGCACCATGGAG+CGG 0.602738 3.2:+60983128 None:intergenic
AGGATCTGATGTTAGTGCTG+AGG 0.608918 3.2:-60982942 MS.gene048706:CDS
GGCCAGCAGAGGTTCCTGGT+TGG 0.612892 3.2:+60983359 None:intergenic
AGTCCAAATTTGTTCCAACC+AGG 0.613010 3.2:-60983373 MS.gene048706:CDS
GGAAGAAATTCCATTCTGAA+GGG 0.616039 3.2:+60983000 None:intergenic
TGAAAGTTGTCATATAGCCA+TGG 0.616309 3.2:+60983874 None:intergenic
GGTCAAACCCTCATCAGCCA+GGG 0.622364 3.2:+60984116 None:intergenic
TAACATTGATGGTCTTACCC+TGG 0.623982 3.2:-60984133 MS.gene048706:CDS
TGGAAAGTCCGTGCTAACAA+TGG 0.624040 3.2:-60983616 MS.gene048706:CDS
GGTCGAGGCACCTGAAGATG+GGG 0.627505 3.2:+60983168 None:intergenic
GCAGTAGTGAACGAAACAGC+AGG 0.631481 3.2:+60983106 None:intergenic
TCGACCTCTAATCTGATGCA+GGG 0.635425 3.2:-60983151 MS.gene048706:CDS
ACACTGCTGCTGTTCCTGCA+GGG 0.635731 3.2:-60983333 MS.gene048706:CDS
GATGGGAGAGGACTCAATGT+CGG 0.638132 3.2:+60984080 None:intergenic
AGCAGGCAATCCAAGCACCA+TGG 0.639907 3.2:+60983123 None:intergenic
GAGGCACCTGAAGATGGGGA+TGG 0.642298 3.2:+60983172 None:intergenic
GTTGCTCGTGTGTTGGACGA+GGG 0.650160 3.2:-60983898 MS.gene048706:CDS
CATGCGTTCACTGAAGTAAG+CGG 0.663600 3.2:+60984008 None:intergenic
GCAGTGTTCAAGGATGGGAG+AGG 0.664768 3.2:+60984068 None:intergenic
TGAATCCAAAGGGCAAACCG+TGG 0.676765 3.2:+60983773 None:intergenic
CAGGTGATTCAATGGAACAG+TGG 0.687191 3.2:+60983813 None:intergenic
CATATGTGTGTAAAGCACCA+AGG 0.691205 3.2:+60983716 None:intergenic
GATCTGATGTTAGTGCTGAG+GGG 0.730140 3.2:-60982940 MS.gene048706:CDS
GTACCGCAGTCTGAGCAGCG+AGG 0.775384 3.2:+60983242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTCATATTTAAACAAAAC+AGG + chr3.2:60983459-60983478 None:intergenic 20.0%
! ACATTTGATTCATCATACAT+AGG + chr3.2:60984151-60984170 None:intergenic 25.0%
! TGACAACTTTCATATAGTTA+TGG - chr3.2:60983176-60983195 MS.gene048706:CDS 25.0%
! TTGTTTAAATATGAGAAGCT+TGG - chr3.2:60983462-60983481 MS.gene048706:intron 25.0%
!! CAAACTAAAAAAAGTATGAC+AGG - chr3.2:60983819-60983838 MS.gene048706:CDS 25.0%
GTTATGGGAAATGATGTAAT+AGG - chr3.2:60984077-60984096 MS.gene048706:CDS 30.0%
TGATTCATCATACATAGGAT+TGG + chr3.2:60984146-60984165 None:intergenic 30.0%
TTTGGTTGAATGAATCCAAA+GGG + chr3.2:60983279-60983298 None:intergenic 30.0%
! AAAAAAAGTATGACAGGTTC+AGG - chr3.2:60983825-60983844 MS.gene048706:CDS 30.0%
! AATGGATTTAATGATGATGC+TGG - chr3.2:60983984-60984003 MS.gene048706:CDS 30.0%
! ATTTAATGATGATGCTGGTT+CGG - chr3.2:60983989-60984008 MS.gene048706:CDS 30.0%
!! ATCCTACAAACACTTGTTAT+TGG + chr3.2:60983625-60983644 None:intergenic 30.0%
!! CAATTTTAATGATCGTATGC+TGG - chr3.2:60983737-60983756 MS.gene048706:CDS 30.0%
!! TGCTATTCTTGCTATTAAAC+AGG - chr3.2:60983770-60983789 MS.gene048706:CDS 30.0%
AAATTGTGTAAATTCCCTGC+AGG + chr3.2:60983723-60983742 None:intergenic 35.0%
AGGAACTGTGAATGGTATTA+CGG + chr3.2:60983353-60983372 None:intergenic 35.0%
AGGAAGAAATTCCATTCTGA+AGG + chr3.2:60984043-60984062 None:intergenic 35.0%
ATTGAATCACCTGGACATTT+GGG - chr3.2:60983236-60983255 MS.gene048706:CDS 35.0%
CTTTGGATTCATTCAACCAA+AGG - chr3.2:60983278-60983297 MS.gene048706:CDS 35.0%
CTTTGGTTGAATGAATCCAA+AGG + chr3.2:60983280-60983299 None:intergenic 35.0%
GGAAGAAATTCCATTCTGAA+GGG + chr3.2:60984042-60984061 None:intergenic 35.0%
TGAAAGTTGTCATATAGCCA+TGG + chr3.2:60983168-60983187 None:intergenic 35.0%
TGCCAATAACAAGTGTTTGT+AGG - chr3.2:60983620-60983639 MS.gene048706:CDS 35.0%
TGTTACTGTACCACTGAAAA+AGG - chr3.2:60983398-60983417 MS.gene048706:CDS 35.0%
TTAAATCCATTCCCATCACT+TGG + chr3.2:60983975-60983994 None:intergenic 35.0%
! TAGAAACAGGTTTAAGGTCA+GGG + chr3.2:60983584-60983603 None:intergenic 35.0%
!!! AGCTTGGTGTTTTTTGTTAC+AGG - chr3.2:60983478-60983497 MS.gene048706:intron 35.0%
ACCATCAATGTTAAGGTTCG+TGG + chr3.2:60982899-60982918 None:intergenic 40.0%
ATCAAGCAGTGTTCAAGGAT+GGG + chr3.2:60982979-60982998 None:intergenic 40.0%
ATCCTTGAACACTGCTTGAT+CGG - chr3.2:60982979-60982998 MS.gene048706:CDS 40.0%
ATTTCTTCCTTTGCTGCTGA+TGG - chr3.2:60984053-60984072 MS.gene048706:CDS 40.0%
CAAATGTCCAGGTGATTCAA+TGG + chr3.2:60983237-60983256 None:intergenic 40.0%
CATCAAGTTTGTGGTGAAAC+TGG + chr3.2:60983122-60983141 None:intergenic 40.0%
CATTGAATCACCTGGACATT+TGG - chr3.2:60983235-60983254 MS.gene048706:CDS 40.0%
CCATCAATGTTAAGGTTCGT+GGG + chr3.2:60982898-60982917 None:intergenic 40.0%
CGTAAGAACCATTGTTAGCA+CGG + chr3.2:60983434-60983453 None:intergenic 40.0%
GGATTCATTCAACCAAAGGT+TGG - chr3.2:60983282-60983301 MS.gene048706:CDS 40.0%
GGGTAAGACCATCAATGTTA+AGG + chr3.2:60982906-60982925 None:intergenic 40.0%
GGTTGGAACAAATTTGGACT+CGG + chr3.2:60983666-60983685 None:intergenic 40.0%
GTTCCTGGTTGGAACAAATT+TGG + chr3.2:60983672-60983691 None:intergenic 40.0%
TGCGTGTAGAAACAGGTTTA+AGG + chr3.2:60983590-60983609 None:intergenic 40.0%
TTTCTTCCTTTGCTGCTGAT+GGG - chr3.2:60984054-60984073 MS.gene048706:CDS 40.0%
! AGTCCAAATTTGTTCCAACC+AGG - chr3.2:60983666-60983685 MS.gene048706:CDS 40.0%
! ATTCAACCAAAGGTTGGTCA+AGG - chr3.2:60983288-60983307 MS.gene048706:CDS 40.0%
! CATATGTGTGTAAAGCACCA+AGG + chr3.2:60983326-60983345 None:intergenic 40.0%
! GTAGAAACAGGTTTAAGGTC+AGG + chr3.2:60983585-60983604 None:intergenic 40.0%
! TAACATTGATGGTCTTACCC+TGG - chr3.2:60982906-60982925 MS.gene048706:CDS 40.0%
!! AAACCTGTTTCTACACGCAT+AGG - chr3.2:60983591-60983610 MS.gene048706:CDS 40.0%
!! AACCTGTTTCTACACGCATA+GGG - chr3.2:60983592-60983611 MS.gene048706:CDS 40.0%
!!! ACTTTCCACTCCTTTTTCAG+TGG + chr3.2:60983411-60983430 None:intergenic 40.0%
!!! GGTGTTTTTTGTTACAGGTG+TGG - chr3.2:60983483-60983502 MS.gene048706:intron 40.0%
AATGTCGGCAGCTAGGTTAT+GGG + chr3.2:60982947-60982966 None:intergenic 45.0%
ACTTGATGTTGCTCGTGTGT+TGG - chr3.2:60983134-60983153 MS.gene048706:CDS 45.0%
AGGATCTGATGTTAGTGCTG+AGG - chr3.2:60984097-60984116 MS.gene048706:CDS 45.0%
CAAGGAATTGGCAGTTTCCT+TGG - chr3.2:60983306-60983325 MS.gene048706:CDS 45.0%
CACGAGCAACATCAAGTTTG+TGG + chr3.2:60983131-60983150 None:intergenic 45.0%
CACTGTTCCATTGAATCACC+TGG - chr3.2:60983227-60983246 MS.gene048706:CDS 45.0%
CAGGTGATTCAATGGAACAG+TGG + chr3.2:60983229-60983248 None:intergenic 45.0%
CATGCGTTCACTGAAGTAAG+CGG + chr3.2:60983034-60983053 None:intergenic 45.0%
CATTCTTGGTCATTCGGACA+AGG - chr3.2:60983506-60983525 MS.gene048706:intron 45.0%
CCAATTCCTTGACCAACCTT+TGG + chr3.2:60983297-60983316 None:intergenic 45.0%
CCCACGAACCTTAACATTGA+TGG - chr3.2:60982895-60982914 MS.gene048706:CDS 45.0%
CCTCTTTCTCTCCAAGTGAT+GGG - chr3.2:60983961-60983980 MS.gene048706:CDS 45.0%
CTGTACCACTGAAAAAGGAG+TGG - chr3.2:60983403-60983422 MS.gene048706:intron 45.0%
GATCAAGCAGTGTTCAAGGA+TGG + chr3.2:60982980-60982999 None:intergenic 45.0%
GTGTGGCATTCTTGGTCATT+CGG - chr3.2:60983500-60983519 MS.gene048706:intron 45.0%
GTTATGGAACGTATTGCTCC+TGG - chr3.2:60983192-60983211 MS.gene048706:CDS 45.0%
TCGACCTCTAATCTGATGCA+GGG - chr3.2:60983888-60983907 MS.gene048706:CDS 45.0%
TCGCAGAAAGGAACTGTGAA+TGG + chr3.2:60983361-60983380 None:intergenic 45.0%
TGGAAAGTCCGTGCTAACAA+TGG - chr3.2:60983423-60983442 MS.gene048706:intron 45.0%
TGTTACAGGTGTGGCATTCT+TGG - chr3.2:60983492-60983511 MS.gene048706:intron 45.0%
TTCGAACTGGACTCTGATGA+TGG - chr3.2:60983543-60983562 MS.gene048706:CDS 45.0%
TTCTTCCTTTGCTGCTGATG+GGG - chr3.2:60984055-60984074 MS.gene048706:CDS 45.0%
TTTGCTGCTGATGGGGTTAT+GGG - chr3.2:60984062-60984081 MS.gene048706:CDS 45.0%
! AGCGGCTTTGATTTCTCGAT+CGG + chr3.2:60983016-60983035 None:intergenic 45.0%
! CCAAAGGTTGGTCAAGGAAT+TGG - chr3.2:60983294-60983313 MS.gene048706:CDS 45.0%
! GATCTGATGTTAGTGCTGAG+GGG - chr3.2:60984099-60984118 MS.gene048706:CDS 45.0%
! GGATCTGATGTTAGTGCTGA+GGG - chr3.2:60984098-60984117 MS.gene048706:CDS 45.0%
! TGTTTCTACACGCATAGGGT+CGG - chr3.2:60983596-60983615 MS.gene048706:CDS 45.0%
! TTCTCTCCAAGTGATGGGAA+TGG - chr3.2:60983966-60983985 MS.gene048706:CDS 45.0%
ATGATTGTCACACGCTTGCC+TGG + chr3.2:60983072-60983091 None:intergenic 50.0%
CAATGTCGGCAGCTAGGTTA+TGG + chr3.2:60982948-60982967 None:intergenic 50.0%
CAGGAACAGCAGCAGTGTTA+CGG + chr3.2:60983704-60983723 None:intergenic 50.0%
CATAACCCCATCAGCAGCAA+AGG + chr3.2:60984063-60984082 None:intergenic 50.0%
CCCATCACTTGGAGAGAAAG+AGG + chr3.2:60983964-60983983 None:intergenic 50.0%
CCTCACTTTGAGTCGCAGAA+AGG + chr3.2:60983373-60983392 None:intergenic 50.0%
CCTTTCTGCGACTCAAAGTG+AGG - chr3.2:60983370-60983389 MS.gene048706:CDS 50.0%
CTCGACCTCTAATCTGATGC+AGG - chr3.2:60983887-60983906 MS.gene048706:CDS 50.0%
CTCGGCATAGCATCAGGTAT+AGG + chr3.2:60983648-60983667 None:intergenic 50.0%
CTGCATCAGATTAGAGGTCG+AGG + chr3.2:60983889-60983908 None:intergenic 50.0%
CTTTGCTGCTGATGGGGTTA+TGG - chr3.2:60984061-60984080 MS.gene048706:CDS 50.0%
GACCCTATGCGTGTAGAAAC+AGG + chr3.2:60983597-60983616 None:intergenic 50.0%
GACCGATCAAGCAGTGTTCA+AGG + chr3.2:60982984-60983003 None:intergenic 50.0%
GATGGGAGAGGACTCAATGT+CGG + chr3.2:60982962-60982981 None:intergenic 50.0%
GCAGTAGTGAACGAAACAGC+AGG + chr3.2:60983936-60983955 None:intergenic 50.0%
GCCTCTTTCTCTCCAAGTGA+TGG - chr3.2:60983960-60983979 MS.gene048706:CDS 50.0%
TCATTCGGACAAGGTGTGTC+CGG - chr3.2:60983515-60983534 MS.gene048706:intron 50.0%
TGAATCCAAAGGGCAAACCG+TGG + chr3.2:60983269-60983288 None:intergenic 50.0%
TGTGTGCTTGCCCTTCAGAA+TGG - chr3.2:60984029-60984048 MS.gene048706:CDS 50.0%
TTTGGACTCGGCATAGCATC+AGG + chr3.2:60983654-60983673 None:intergenic 50.0%
! CTGCTTGATCGGTCGTGTTT+TGG - chr3.2:60982990-60983009 MS.gene048706:CDS 50.0%
! CTTTTGCCATCCCCATCTTC+AGG - chr3.2:60983861-60983880 MS.gene048706:CDS 50.0%
! GCTGTTTCGTTCACTACTGC+TGG - chr3.2:60983936-60983955 MS.gene048706:CDS 50.0%
!! TGATGATGGTGTGCGCAACT+GGG - chr3.2:60983557-60983576 MS.gene048706:CDS 50.0%
AACACTGCTGCTGTTCCTGC+AGG - chr3.2:60983705-60983724 MS.gene048706:CDS 55.0%
ACACTGCTGCTGTTCCTGCA+GGG - chr3.2:60983706-60983725 MS.gene048706:CDS 55.0%
ACAGTGGTCGAGACAACACC+AGG + chr3.2:60983213-60983232 None:intergenic 55.0%
AGCAGGCAATCCAAGCACCA+TGG + chr3.2:60983919-60983938 None:intergenic 55.0%
AGGACTCAATGTCGGCAGCT+AGG + chr3.2:60982954-60982973 None:intergenic 55.0%
ATGTCCCGAGCATGGAAACC+AGG - chr3.2:60983051-60983070 MS.gene048706:CDS 55.0%
CTTGCCTGGTTTCCATGCTC+GGG + chr3.2:60983058-60983077 None:intergenic 55.0%
GACATTTGGGTGCAGGTCCA+CGG - chr3.2:60983249-60983268 MS.gene048706:CDS 55.0%
GAGTCCAGTTCGAACAGCTC+CGG + chr3.2:60983537-60983556 None:intergenic 55.0%
GCAATCCAAGCACCATGGAG+CGG + chr3.2:60983914-60983933 None:intergenic 55.0%
GCAGTGTTCAAGGATGGGAG+AGG + chr3.2:60982974-60982993 None:intergenic 55.0%
GCTTGCCTGGTTTCCATGCT+CGG + chr3.2:60983059-60983078 None:intergenic 55.0%
GGTCAAACCCTCATCAGCCA+GGG + chr3.2:60982926-60982945 None:intergenic 55.0%
GGTCTTACCCTGGCTGATGA+GGG - chr3.2:60982916-60982935 MS.gene048706:CDS 55.0%
GTTGCTCGTGTGTTGGACGA+GGG - chr3.2:60983141-60983160 MS.gene048706:CDS 55.0%
TCACCTGGACATTTGGGTGC+AGG - chr3.2:60983242-60983261 MS.gene048706:CDS 55.0%
TGTTGCTCGTGTGTTGGACG+AGG - chr3.2:60983140-60983159 MS.gene048706:CDS 55.0%
TTCCAACCAGGAACCTCTGC+TGG - chr3.2:60983678-60983697 MS.gene048706:CDS 55.0%
! AGGTCGAGGCACCTGAAGAT+GGG + chr3.2:60983875-60983894 None:intergenic 55.0%
! GATGATGGTGTGCGCAACTG+GGG - chr3.2:60983558-60983577 MS.gene048706:CDS 55.0%
! TGGTCTTACCCTGGCTGATG+AGG - chr3.2:60982915-60982934 MS.gene048706:CDS 55.0%
!! CTGATGATGGTGTGCGCAAC+TGG - chr3.2:60983556-60983575 MS.gene048706:CDS 55.0%
AGCAGTGTTACGGCCAGCAG+AGG + chr3.2:60983694-60983713 None:intergenic 60.0%
CAGGTCCACGGTTTGCCCTT+TGG - chr3.2:60983261-60983280 MS.gene048706:CDS 60.0%
GCGGCCCTGCATCAGATTAG+AGG + chr3.2:60983895-60983914 None:intergenic 60.0%
GGACCTGCACCCAAATGTCC+AGG + chr3.2:60983248-60983267 None:intergenic 60.0%
GGGTCAAACCCTCATCAGCC+AGG + chr3.2:60982927-60982946 None:intergenic 60.0%
GTGAACGCATGTCCCGAGCA+TGG - chr3.2:60983043-60983062 MS.gene048706:CDS 60.0%
GTGTCCGGAGCTGTTCGAAC+TGG - chr3.2:60983530-60983549 MS.gene048706:intron 60.0%
GTGTGTTGGACGAGGGTCCA+TGG - chr3.2:60983148-60983167 MS.gene048706:CDS 60.0%
TGTCCTCGCTGCTCAGACTG+CGG - chr3.2:60983794-60983813 MS.gene048706:CDS 60.0%
TTACGGCCAGCAGAGGTTCC+TGG + chr3.2:60983687-60983706 None:intergenic 60.0%
! GAGGCACCTGAAGATGGGGA+TGG + chr3.2:60983870-60983889 None:intergenic 60.0%
! GAGGTCGAGGCACCTGAAGA+TGG + chr3.2:60983876-60983895 None:intergenic 60.0%
! GGTCGAGGCACCTGAAGATG+GGG + chr3.2:60983874-60983893 None:intergenic 60.0%
GGCCAGCAGAGGTTCCTGGT+TGG + chr3.2:60983683-60983702 None:intergenic 65.0%
GTACCGCAGTCTGAGCAGCG+AGG + chr3.2:60983800-60983819 None:intergenic 65.0%
TCTGATGCAGGGCCGCTCCA+TGG - chr3.2:60983899-60983918 MS.gene048706:CDS 65.0%
CAGGGCCGCTCCATGGTGCT+TGG - chr3.2:60983906-60983925 MS.gene048706:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 60982889 60984172 60982889 ID=MS.gene048706
chr3.2 mRNA 60982889 60984172 60982889 ID=MS.gene048706.t1;Parent=MS.gene048706
chr3.2 exon 60983534 60984172 60983534 ID=MS.gene048706.t1.exon1;Parent=MS.gene048706.t1
chr3.2 CDS 60983534 60984172 60983534 ID=cds.MS.gene048706.t1;Parent=MS.gene048706.t1
chr3.2 exon 60982889 60983419 60982889 ID=MS.gene048706.t1.exon2;Parent=MS.gene048706.t1
chr3.2 CDS 60982889 60983419 60982889 ID=cds.MS.gene048706.t1;Parent=MS.gene048706.t1
Gene Sequence

>MS.gene048706

ATGGATCCCACGAACCTTAACATTGATGGTCTTACCCTGGCTGATGAGGGTTTGACCCATAACCTAGCTGCCGACATTGAGTCCTCTCCCATCCTTGAACACTGCTTGATCGGTCGTGTTTTGGCCGATCGAGAAATCAAAGCCGCTTACTTCAGTGAACGCATGTCCCGAGCATGGAAACCAGGCAAGCGTGTGACAATCATCAAATCTGATGCAGATCGATTTCTGTTCCAGTTTCACCACAAACTTGATGTTGCTCGTGTGTTGGACGAGGGTCCATGGCTATATGACAACTTTCATATAGTTATGGAACGTATTGCTCCTGGTGTTGTCTCGACCACTGTTCCATTGAATCACCTGGACATTTGGGTGCAGGTCCACGGTTTGCCCTTTGGATTCATTCAACCAAAGGTTGGTCAAGGAATTGGCAGTTTCCTTGGTGCTTTACACACATATGATAGCCGTAATACCATTCACAGTTCCTTTCTGCGACTCAAAGTGAGGATTGATGTTACTGTACCACTGAAAAAGGAGTGGAAAGTCCGTGCTAACAATGGTTCTTACGTTCCTGTTTTGTTTAAATATGAGAAGCTTGGTGTTTTTTGTTACAGGTGTGGCATTCTTGGTCATTCGGACAAGGTGTGTCCGGAGCTGTTCGAACTGGACTCTGATGATGGTGTGCGCAACTGGGGCCCTGACCTTAAACCTGTTTCTACACGCATAGGGTCGGCTGCCAATAACAAGTGTTTGTAGGATCCTATACCTGATGCTATGCCGAGTCCAAATTTGTTCCAACCAGGAACCTCTGCTGGCCGTAACACTGCTGCTGTTCCTGCAGGGAATTTACACAATTTTAATGATCGTATGCTGGCTGTTGATAATGCTATTCTTGCTATTAAACAGGATGTCCTCGCTGCTCAGACTGCGGTACAAACTAAAAAAAGTATGACAGGTTCAGGTTCTCAATTTCAGCTTTTGCCATCCCCATCTTCAGGTGCCTCGACCTCTAATCTGATGCAGGGCCGCTCCATGGTGCTTGGATTGCCTGCTGTTTCGTTCACTACTGCTGGTGCCTCTTTCTCTCCAAGTGATGGGAATGGATTTAATGATGATGCTGGTTCGGAGTTGAAGAAGAGAAAGTGTGTGCTTGCCCTTCAGAATGGAATTTCTTCCTTTGCTGCTGATGGGGTTATGGGAAATGATGTAATAGGATCTGATGTTAGTGCTGAGGGGATTCTGAAATTAATGTATTTTCCAATCCTATGTATGATGAATCAAATGTAA
Protein sequence

>MS.gene048706.t1

MDPTNLNIDGLTLADEGLTHNLAADIESSPILEHCLIGRVLADREIKAAYFSERMSRAWKPGKRVTIIKSDADRFLFQFHHKLDVARVLDEGPWLYDNFHIVMERIAPGVVSTTVPLNHLDIWVQVHGLPFGFIQPKVGQGIGSFLGALHTYDSRNTIHSSFLRLKVRIDVTVPLKKEWKVRANNGSYVPVLFKYEKLGVFCYRCGILGHSDKDPIPDAMPSPNLFQPGTSAGRNTAAVPAGNLHNFNDRMLAVDNAILAIKQDVLAAQTAVQTKKSMTGSGSQFQLLPSPSSGASTSNLMQGRSMVLGLPAVSFTTAGASFSPSDGNGFNDDAGSELKKRKCVLALQNGISSFAADGVMGNDVIGSDVSAEGILKLMYFPILCMMNQM