Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87529.t1 | AES70414.1 | 47.6 | 338 | 73 | 5 | 28 | 319 | 1 | 280 | 7.30E-69 | 271.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87529.t1 | G7J017 | 47.6 | 338 | 73 | 5 | 28 | 319 | 1 | 280 | 5.3e-69 | 271.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87529.t1 | MTR_3g053920 | 49.398 | 332 | 76 | 5 | 28 | 319 | 1 | 280 | 2.22e-90 | 273 |
MS.gene87529.t1 | MTR_2g061500 | 84.158 | 101 | 16 | 0 | 28 | 128 | 1 | 101 | 3.65e-57 | 183 |
MS.gene87529.t1 | MTR_4g103530 | 59.574 | 94 | 13 | 1 | 82 | 150 | 1 | 94 | 1.13e-28 | 110 |
MS.gene87529.t1 | MTR_6g033215 | 31.579 | 171 | 90 | 2 | 58 | 201 | 124 | 294 | 9.11e-24 | 100 |
MS.gene87529.t1 | MTR_0010s0370 | 33.146 | 178 | 82 | 5 | 35 | 179 | 4 | 177 | 2.18e-22 | 93.6 |
MS.gene87529.t1 | MTR_0010s0350 | 33.146 | 178 | 82 | 5 | 35 | 179 | 4 | 177 | 2.18e-22 | 93.6 |
MS.gene87529.t1 | MTR_8g463110 | 53.211 | 109 | 49 | 1 | 263 | 369 | 2 | 110 | 1.63e-21 | 96.7 |
MS.gene87529.t1 | MTR_7g011710 | 50.588 | 85 | 17 | 1 | 82 | 141 | 1 | 85 | 3.63e-20 | 86.7 |
MS.gene87529.t1 | MTR_6g053230 | 27.485 | 171 | 97 | 5 | 11 | 178 | 13 | 159 | 2.75e-13 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 89 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATGATGGCGTCCGTAAT+TGG | 0.182036 | 4.1:+75742050 | MS.gene87529:CDS |
AGAAGCCATCAGATGTATTT+TGG | 0.196323 | 4.1:-75742345 | None:intergenic |
CATCGACTTTGTGGTGAAAT+TGG | 0.201083 | 4.1:-75741688 | None:intergenic |
ATTCTTGAACACTGTCTTAT+TGG | 0.223174 | 4.1:+75741548 | MS.gene87529:CDS |
AGACATACGCTTGCTGAAAT+AGG | 0.265838 | 4.1:-75741603 | None:intergenic |
CCTATGCCTTGACCTACTTT+TGG | 0.278124 | 4.1:-75741788 | None:intergenic |
CGAAAGGCAGACCGTGAATA+TGG | 0.313876 | 4.1:-75741754 | None:intergenic |
CCAAGTCGTCCTTTGGTGCT+TGG | 0.331606 | 4.1:+75742401 | MS.gene87529:CDS |
CAGGTTCAGTTTCAAGGTTA+AGG | 0.338792 | 4.1:-75741514 | None:intergenic |
CATATTCACGGTCTGCCTTT+CGG | 0.343325 | 4.1:+75741755 | MS.gene87529:CDS |
AGGTTCAGTTTCAAGGTTAA+GGG | 0.345516 | 4.1:-75741513 | None:intergenic |
TGATGATGGCGTCCGTAATT+GGG | 0.358339 | 4.1:+75742051 | MS.gene87529:CDS |
CAAGGCATAGGAAGCTTCTT+AGG | 0.376769 | 4.1:+75741800 | MS.gene87529:CDS |
TTTAGCTAGCACCGCATTAT+GGG | 0.386461 | 4.1:-75742297 | None:intergenic |
TCAAGTCAGCTCCCCAATTA+CGG | 0.392301 | 4.1:-75742063 | None:intergenic |
CCTGCTTCCAAGTCGTCCTT+TGG | 0.398210 | 4.1:+75742394 | MS.gene87529:CDS |
GCAAGCGTATGTCTCGAGTA+TGG | 0.401222 | 4.1:+75741612 | MS.gene87529:CDS |
TCAAGAATGGCAACAGTATC+AGG | 0.401444 | 4.1:-75741533 | None:intergenic |
CAGTATCAGGTTCAGTTTCA+AGG | 0.407871 | 4.1:-75741520 | None:intergenic |
CTCCTTCCCAGCCGATCTCA+TGG | 0.419919 | 4.1:+75741439 | MS.gene87529:CDS |
TATGACAATTTCCATATTCA+CGG | 0.420305 | 4.1:+75741743 | MS.gene87529:CDS |
TTCGAATTAGATTCTGATGA+TGG | 0.422237 | 4.1:+75742037 | MS.gene87529:CDS |
TGTCACAGGTGTGGATTGAT+TGG | 0.423731 | 4.1:+75741986 | MS.gene87529:CDS |
AGGTGAGACCGTCAAGGTTA+AGG | 0.433080 | 4.1:-75741472 | None:intergenic |
CTTTGTGGTGAAATTGGAAA+AGG | 0.446795 | 4.1:-75741682 | None:intergenic |
ACTTGCTGCTGATGGGGATG+TGG | 0.447679 | 4.1:+75742532 | MS.gene87529:CDS |
GAAGGATCCATGAGATCGGC+TGG | 0.451674 | 4.1:-75741446 | None:intergenic |
TCATTAGATTCACTTGAGAA+TGG | 0.464881 | 4.1:-75742437 | None:intergenic |
GGAGAAACACTTGCTGCTGA+TGG | 0.471233 | 4.1:+75742524 | MS.gene87529:CDS |
CGGTCTCACCTTGTCTGAAG+AGG | 0.477786 | 4.1:+75741484 | MS.gene87529:CDS |
TGCTTCCAAAATACATCTGA+TGG | 0.493296 | 4.1:+75742340 | MS.gene87529:CDS |
GTAACGGTAAGACACTGATT+TGG | 0.494267 | 4.1:-75741660 | None:intergenic |
ATGTCTCGAGTATGGAAGTC+AGG | 0.495544 | 4.1:+75741620 | MS.gene87529:CDS |
AGTAACAAAAGCACCGTTTG+TGG | 0.497986 | 4.1:-75741930 | None:intergenic |
TACGTGCAGCATCGACTTTG+TGG | 0.498421 | 4.1:-75741697 | None:intergenic |
CCTTCCAACCTTAACCTTGA+CGG | 0.500001 | 4.1:+75741464 | MS.gene87529:CDS |
AGGTGATGAACAAATTGTAA+TGG | 0.502006 | 4.1:+75742646 | MS.gene87529:intron |
GAGAAACACTTGCTGCTGAT+GGG | 0.502471 | 4.1:+75742525 | MS.gene87529:CDS |
CGTGCGCTGGCCGTTCAGAA+TGG | 0.503482 | 4.1:+75742503 | MS.gene87529:CDS |
CCAAGCACCAAAGGACGACT+TGG | 0.504912 | 4.1:-75742401 | None:intergenic |
AATAAGACAGTGTTCAAGAA+TGG | 0.511332 | 4.1:-75741546 | None:intergenic |
TGGCGTGTCCGTGCCACAAA+CGG | 0.511841 | 4.1:+75741917 | MS.gene87529:CDS |
CACCTTCAGTAGCTGCAGTT+CGG | 0.513939 | 4.1:-75742193 | None:intergenic |
GCAGGTAAGCCAAGCACCAA+AGG | 0.518575 | 4.1:-75742410 | None:intergenic |
CCAAAGGACGACTTGGAAGC+AGG | 0.528272 | 4.1:-75742394 | None:intergenic |
TCACTTGAGAATGGAGCAGC+AGG | 0.528382 | 4.1:-75742428 | None:intergenic |
AGTATGGAAGTCAGGAAAGA+AGG | 0.532104 | 4.1:+75741628 | MS.gene87529:CDS |
GGATTCATCCAACCAAAAGT+AGG | 0.533518 | 4.1:+75741776 | MS.gene87529:CDS |
ATCCATGAGATCGGCTGGGA+AGG | 0.534590 | 4.1:-75741441 | None:intergenic |
TGCTGCACGTATTCTTGATG+AGG | 0.537306 | 4.1:+75741709 | MS.gene87529:CDS |
GAAGAAAAGAAAGCGTGCGC+TGG | 0.537727 | 4.1:+75742490 | MS.gene87529:CDS |
AACTGCAGCTACTGAAGGTG+TGG | 0.539423 | 4.1:+75742196 | MS.gene87529:CDS |
CTGATGGCTTCTTCTTCCAC+AGG | 0.544870 | 4.1:+75742356 | MS.gene87529:CDS |
GTATTCTTGATGAGGGTCCA+TGG | 0.545558 | 4.1:+75741717 | MS.gene87529:CDS |
GATGATGGCGTCCGTAATTG+GGG | 0.557620 | 4.1:+75742052 | MS.gene87529:CDS |
CTTGCTGCTGATGGGGATGT+GGG | 0.559659 | 4.1:+75742533 | MS.gene87529:CDS |
CATGAGATCGGCTGGGAAGG+AGG | 0.562053 | 4.1:-75741438 | None:intergenic |
GGTCTCACCTTGTCTGAAGA+GGG | 0.564346 | 4.1:+75741485 | MS.gene87529:CDS |
CCGTCAAGGTTAAGGTTGGA+AGG | 0.575288 | 4.1:-75741464 | None:intergenic |
AGCGACTCTGACACGCATAT+AGG | 0.575736 | 4.1:-75741864 | None:intergenic |
GAGACCGTCAAGGTTAAGGT+TGG | 0.575959 | 4.1:-75741468 | None:intergenic |
AGAATCTAATTCGAACAACT+CGG | 0.580030 | 4.1:-75742029 | None:intergenic |
TGGGAAGGAGGAAACGATGA+GGG | 0.589219 | 4.1:-75741426 | None:intergenic |
CAAAAGCACCGTTTGTGGCA+CGG | 0.590707 | 4.1:-75741925 | None:intergenic |
GGTGAAATTGGAAAAGGTAA+CGG | 0.593206 | 4.1:-75741676 | None:intergenic |
TGGAAATTGTCATACAGCCA+TGG | 0.595064 | 4.1:-75741734 | None:intergenic |
GAATCTAATTCGAACAACTC+GGG | 0.601829 | 4.1:-75742028 | None:intergenic |
GCAAGGAAACAGAGGAGACT+CGG | 0.606376 | 4.1:-75741398 | None:intergenic |
GATGACATACAAGAGGTAAG+TGG | 0.607658 | 4.1:+75742458 | MS.gene87529:CDS |
GGCCGAACTGCAGCTACTGA+AGG | 0.610869 | 4.1:+75742191 | MS.gene87529:CDS |
AGAAACACTTGCTGCTGATG+GGG | 0.612523 | 4.1:+75742526 | MS.gene87529:CDS |
AAACGATGAGGGAAACAGCA+AGG | 0.612654 | 4.1:-75741415 | None:intergenic |
ATCCAACCAAAAGTAGGTCA+AGG | 0.617189 | 4.1:+75741782 | MS.gene87529:CDS |
CTGGGAAGGAGGAAACGATG+AGG | 0.617559 | 4.1:-75741427 | None:intergenic |
GTTGGAAGGATCCATGAGAT+CGG | 0.617990 | 4.1:-75741450 | None:intergenic |
GCTGCACGTATTCTTGATGA+GGG | 0.620115 | 4.1:+75741710 | MS.gene87529:CDS |
CCAAAAGTAGGTCAAGGCAT+AGG | 0.620618 | 4.1:+75741788 | MS.gene87529:CDS |
CATACAAGAGGTAAGTGGCT+CGG | 0.622041 | 4.1:+75742463 | MS.gene87529:CDS |
GCTAGTAGCTGAAGTACCTG+TGG | 0.624706 | 4.1:-75742372 | None:intergenic |
AAGTGTTTCTCCATTCTGAA+CGG | 0.629068 | 4.1:-75742513 | None:intergenic |
GGGAAACAGCAAGGAAACAG+AGG | 0.631035 | 4.1:-75741406 | None:intergenic |
ATCTAATGATGACATACAAG+AGG | 0.639639 | 4.1:+75742451 | MS.gene87529:CDS |
AAGGATCCATGAGATCGGCT+GGG | 0.652513 | 4.1:-75741445 | None:intergenic |
ATTGAATCTCACGATCAGCA+AGG | 0.657379 | 4.1:-75741577 | None:intergenic |
ACTGCAGCTACTGAAGGTGT+GGG | 0.661239 | 4.1:+75742197 | MS.gene87529:CDS |
GGTTAAACCCTCTTCAGACA+AGG | 0.669126 | 4.1:-75741492 | None:intergenic |
CAGACAAGGTGAGACCGTCA+AGG | 0.670109 | 4.1:-75741478 | None:intergenic |
TTTGGTTGGATGAATCCGAA+AGG | 0.672828 | 4.1:-75741770 | None:intergenic |
TGTGCTTGCTGCCCATAATG+CGG | 0.690639 | 4.1:+75742286 | MS.gene87529:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACTTTAAATATGAAAAATT+GGG | + | chr4.1:75741956-75741975 | MS.gene87529:CDS | 10.0% |
!! | TAACTTTAAATATGAAAAAT+TGG | + | chr4.1:75741955-75741974 | MS.gene87529:CDS | 10.0% |
! | CGGGGGGGGGGGGGGGGGGG+GGG | + | chr4.1:75742586-75742605 | MS.gene87529:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+AGG | + | chr4.1:75742587-75742606 | MS.gene87529:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4.1:75742587-75742606 | MS.gene87529:intron | 100.0% |
! | ATTGATATGAATGTAATTGC+CGG | + | chr4.1:75742617-75742636 | MS.gene87529:intron | 25.0% |
! | TATGACAATTTCCATATTCA+CGG | + | chr4.1:75741743-75741762 | MS.gene87529:CDS | 25.0% |
AATAAGACAGTGTTCAAGAA+TGG | - | chr4.1:75741549-75741568 | None:intergenic | 30.0% | |
AGAATCTAATTCGAACAACT+CGG | - | chr4.1:75742032-75742051 | None:intergenic | 30.0% | |
ATAGGTTCAAATGTTAGTCA+CGG | + | chr4.1:75742566-75742585 | MS.gene87529:intron | 30.0% | |
ATCTAATGATGACATACAAG+AGG | + | chr4.1:75742451-75742470 | MS.gene87529:CDS | 30.0% | |
ATTCTTGAACACTGTCTTAT+TGG | + | chr4.1:75741548-75741567 | MS.gene87529:CDS | 30.0% | |
TCATTAGATTCACTTGAGAA+TGG | - | chr4.1:75742440-75742459 | None:intergenic | 30.0% | |
TTCGAATTAGATTCTGATGA+TGG | + | chr4.1:75742037-75742056 | MS.gene87529:CDS | 30.0% | |
! | ACAATTTGTTCATCACCTAA+AGG | - | chr4.1:75742644-75742663 | None:intergenic | 30.0% |
! | CAATTTGTTCATCACCTAAA+GGG | - | chr4.1:75742643-75742662 | None:intergenic | 30.0% |
! | GATGTGGGAAATTTTGTAAT+AGG | + | chr4.1:75742548-75742567 | MS.gene87529:intron | 30.0% |
AAGTGTTTCTCCATTCTGAA+CGG | - | chr4.1:75742516-75742535 | None:intergenic | 35.0% | |
AGGTTCAGTTTCAAGGTTAA+GGG | - | chr4.1:75741516-75741535 | None:intergenic | 35.0% | |
CTTTGTGGTGAAATTGGAAA+AGG | - | chr4.1:75741685-75741704 | None:intergenic | 35.0% | |
GAATCTAATTCGAACAACTC+GGG | - | chr4.1:75742031-75742050 | None:intergenic | 35.0% | |
GGTGAAATTGGAAAAGGTAA+CGG | - | chr4.1:75741679-75741698 | None:intergenic | 35.0% | |
GTGCTAGCTAAAAAAGGTAA+AGG | + | chr4.1:75742308-75742327 | MS.gene87529:CDS | 35.0% | |
TAGGTTCAAATGTTAGTCAC+GGG | + | chr4.1:75742567-75742586 | MS.gene87529:intron | 35.0% | |
TGCTTCCAAAATACATCTGA+TGG | + | chr4.1:75742340-75742359 | MS.gene87529:CDS | 35.0% | |
! | AGAAGCCATCAGATGTATTT+TGG | - | chr4.1:75742348-75742367 | None:intergenic | 35.0% |
ACTTGAAACCAGTTACGCAA+AGG | + | chr4.1:75742080-75742099 | MS.gene87529:intron | 40.0% | |
AGGTTCAAATGTTAGTCACG+GGG | + | chr4.1:75742568-75742587 | MS.gene87529:intron | 40.0% | |
AGTATGGAAGTCAGGAAAGA+AGG | + | chr4.1:75741628-75741647 | MS.gene87529:CDS | 40.0% | |
ATCCAACCAAAAGTAGGTCA+AGG | + | chr4.1:75741782-75741801 | MS.gene87529:CDS | 40.0% | |
ATCTTGCAACCAACGATTTG+TGG | - | chr4.1:75742119-75742138 | None:intergenic | 40.0% | |
ATTGAATCTCACGATCAGCA+AGG | - | chr4.1:75741580-75741599 | None:intergenic | 40.0% | |
CAGGTTCAGTTTCAAGGTTA+AGG | - | chr4.1:75741517-75741536 | None:intergenic | 40.0% | |
CAGTATCAGGTTCAGTTTCA+AGG | - | chr4.1:75741523-75741542 | None:intergenic | 40.0% | |
GATGACATACAAGAGGTAAG+TGG | + | chr4.1:75742458-75742477 | MS.gene87529:CDS | 40.0% | |
GGATTCATCCAACCAAAAGT+AGG | + | chr4.1:75741776-75741795 | MS.gene87529:CDS | 40.0% | |
GTTACAAACCTTTGCGTAAC+TGG | - | chr4.1:75742091-75742110 | None:intergenic | 40.0% | |
GTTTGATGCAACATAGAAGC+AGG | - | chr4.1:75742148-75742167 | None:intergenic | 40.0% | |
TCAAGAATGGCAACAGTATC+AGG | - | chr4.1:75741536-75741555 | None:intergenic | 40.0% | |
TGCAACATAGAAGCAGGAAT+AGG | - | chr4.1:75742142-75742161 | None:intergenic | 40.0% | |
TGGAAATTGTCATACAGCCA+TGG | - | chr4.1:75741737-75741756 | None:intergenic | 40.0% | |
TTTAGCTAGCACCGCATTAT+GGG | - | chr4.1:75742300-75742319 | None:intergenic | 40.0% | |
TTTGGTTGGATGAATCCGAA+AGG | - | chr4.1:75741773-75741792 | None:intergenic | 40.0% | |
! | AATGCGGTGCTAGCTAAAAA+AGG | + | chr4.1:75742302-75742321 | MS.gene87529:CDS | 40.0% |
! | AATTGGGTGTGTTTTGTCAC+AGG | + | chr4.1:75741972-75741991 | MS.gene87529:CDS | 40.0% |
! | AGACATACGCTTGCTGAAAT+AGG | - | chr4.1:75741606-75741625 | None:intergenic | 40.0% |
! | GTAACGGTAAGACACTGATT+TGG | - | chr4.1:75741663-75741682 | None:intergenic | 40.0% |
!! | AGTAACAAAAGCACCGTTTG+TGG | - | chr4.1:75741933-75741952 | None:intergenic | 40.0% |
!! | CATCGACTTTGTGGTGAAAT+TGG | - | chr4.1:75741691-75741710 | None:intergenic | 40.0% |
!! | TTTTAGCTAGCACCGCATTA+TGG | - | chr4.1:75742301-75742320 | None:intergenic | 40.0% |
AAACGATGAGGGAAACAGCA+AGG | - | chr4.1:75741418-75741437 | None:intergenic | 45.0% | |
AATGTAATTGCCGGCCCTTT+AGG | + | chr4.1:75742626-75742645 | MS.gene87529:intron | 45.0% | |
ATGTCTCGAGTATGGAAGTC+AGG | + | chr4.1:75741620-75741639 | MS.gene87529:CDS | 45.0% | |
CAAGGCATAGGAAGCTTCTT+AGG | + | chr4.1:75741800-75741819 | MS.gene87529:CDS | 45.0% | |
CATACAAGAGGTAAGTGGCT+CGG | + | chr4.1:75742463-75742482 | MS.gene87529:CDS | 45.0% | |
CATATTCACGGTCTGCCTTT+CGG | + | chr4.1:75741755-75741774 | MS.gene87529:CDS | 45.0% | |
CCAAAAGTAGGTCAAGGCAT+AGG | + | chr4.1:75741788-75741807 | MS.gene87529:CDS | 45.0% | |
CCTTCCAACCTTAACCTTGA+CGG | + | chr4.1:75741464-75741483 | MS.gene87529:CDS | 45.0% | |
CTGTCCCACTGAAAAAAGAG+TGG | + | chr4.1:75741897-75741916 | MS.gene87529:CDS | 45.0% | |
GCTGCACGTATTCTTGATGA+GGG | + | chr4.1:75741710-75741729 | MS.gene87529:CDS | 45.0% | |
GGTTAAACCCTCTTCAGACA+AGG | - | chr4.1:75741495-75741514 | None:intergenic | 45.0% | |
GGTTCAAATGTTAGTCACGG+GGG | + | chr4.1:75742569-75742588 | MS.gene87529:intron | 45.0% | |
GTATTCTTGATGAGGGTCCA+TGG | + | chr4.1:75741717-75741736 | MS.gene87529:CDS | 45.0% | |
GTTCAAATGTTAGTCACGGG+GGG | + | chr4.1:75742570-75742589 | MS.gene87529:intron | 45.0% | |
GTTGGAAGGATCCATGAGAT+CGG | - | chr4.1:75741453-75741472 | None:intergenic | 45.0% | |
TCAAGTCAGCTCCCCAATTA+CGG | - | chr4.1:75742066-75742085 | None:intergenic | 45.0% | |
TGCTGCACGTATTCTTGATG+AGG | + | chr4.1:75741709-75741728 | MS.gene87529:CDS | 45.0% | |
TTCAAATGTTAGTCACGGGG+GGG | + | chr4.1:75742571-75742590 | MS.gene87529:intron | 45.0% | |
TTGTTCATCACCTAAAGGGC+CGG | - | chr4.1:75742639-75742658 | None:intergenic | 45.0% | |
! | AGAAACACTTGCTGCTGATG+GGG | + | chr4.1:75742526-75742545 | MS.gene87529:CDS | 45.0% |
! | CCTATGCCTTGACCTACTTT+TGG | - | chr4.1:75741791-75741810 | None:intergenic | 45.0% |
! | GAGAAACACTTGCTGCTGAT+GGG | + | chr4.1:75742525-75742544 | MS.gene87529:CDS | 45.0% |
! | TGTCACAGGTGTGGATTGAT+TGG | + | chr4.1:75741986-75742005 | MS.gene87529:CDS | 45.0% |
!! | TGATGATGGCGTCCGTAATT+GGG | + | chr4.1:75742051-75742070 | MS.gene87529:CDS | 45.0% |
!! | TGCCTTGACCTACTTTTGGT+TGG | - | chr4.1:75741787-75741806 | None:intergenic | 45.0% |
!!! | ACACGCCACTCTTTTTTCAG+TGG | - | chr4.1:75741905-75741924 | None:intergenic | 45.0% |
!!! | ACCAAGCAAGCTGCTTTTGT+TGG | + | chr4.1:75742170-75742189 | MS.gene87529:intron | 45.0% |
!!! | CACGCCACTCTTTTTTCAGT+GGG | - | chr4.1:75741904-75741923 | None:intergenic | 45.0% |
AACTGCAGCTACTGAAGGTG+TGG | + | chr4.1:75742196-75742215 | MS.gene87529:CDS | 50.0% | |
AAGGATCCATGAGATCGGCT+GGG | - | chr4.1:75741448-75741467 | None:intergenic | 50.0% | |
AGCGACTCTGACACGCATAT+AGG | - | chr4.1:75741867-75741886 | None:intergenic | 50.0% | |
AGGTGAGACCGTCAAGGTTA+AGG | - | chr4.1:75741475-75741494 | None:intergenic | 50.0% | |
CAACCAACGATTTGTGGCAG+CGG | - | chr4.1:75742113-75742132 | None:intergenic | 50.0% | |
CACCTTCAGTAGCTGCAGTT+CGG | - | chr4.1:75742196-75742215 | None:intergenic | 50.0% | |
CCGTCAAGGTTAAGGTTGGA+AGG | - | chr4.1:75741467-75741486 | None:intergenic | 50.0% | |
CGAAAGGCAGACCGTGAATA+TGG | - | chr4.1:75741757-75741776 | None:intergenic | 50.0% | |
CTGATGGCTTCTTCTTCCAC+AGG | + | chr4.1:75742356-75742375 | MS.gene87529:CDS | 50.0% | |
GAGACCGTCAAGGTTAAGGT+TGG | - | chr4.1:75741471-75741490 | None:intergenic | 50.0% | |
GCAAGCGTATGTCTCGAGTA+TGG | + | chr4.1:75741612-75741631 | MS.gene87529:CDS | 50.0% | |
GCAAGGAAACAGAGGAGACT+CGG | - | chr4.1:75741401-75741420 | None:intergenic | 50.0% | |
GGGAAACAGCAAGGAAACAG+AGG | - | chr4.1:75741409-75741428 | None:intergenic | 50.0% | |
GGTCTCACCTTGTCTGAAGA+GGG | + | chr4.1:75741485-75741504 | MS.gene87529:CDS | 50.0% | |
TAACCGCTGCCACAAATCGT+TGG | + | chr4.1:75742107-75742126 | MS.gene87529:intron | 50.0% | |
TCAAATGTTAGTCACGGGGG+GGG | + | chr4.1:75742572-75742591 | MS.gene87529:intron | 50.0% | |
TCACTTGAGAATGGAGCAGC+AGG | - | chr4.1:75742431-75742450 | None:intergenic | 50.0% | |
TGGGAAGGAGGAAACGATGA+GGG | - | chr4.1:75741429-75741448 | None:intergenic | 50.0% | |
! | ACTGCAGCTACTGAAGGTGT+GGG | + | chr4.1:75742197-75742216 | MS.gene87529:CDS | 50.0% |
! | GAAGAAAAGAAAGCGTGCGC+TGG | + | chr4.1:75742490-75742509 | MS.gene87529:CDS | 50.0% |
! | GATGATGGCGTCCGTAATTG+GGG | + | chr4.1:75742052-75742071 | MS.gene87529:CDS | 50.0% |
! | GCCAACAAAAGCAGCTTGCT+TGG | - | chr4.1:75742174-75742193 | None:intergenic | 50.0% |
! | GCTAGTAGCTGAAGTACCTG+TGG | - | chr4.1:75742375-75742394 | None:intergenic | 50.0% |
! | GGAGAAACACTTGCTGCTGA+TGG | + | chr4.1:75742524-75742543 | MS.gene87529:CDS | 50.0% |
! | GGTGTGTTTTGTCACAGGTG+TGG | + | chr4.1:75741977-75741996 | MS.gene87529:CDS | 50.0% |
! | TGTGCTTGCTGCCCATAATG+CGG | + | chr4.1:75742286-75742305 | MS.gene87529:CDS | 50.0% |
!! | CAAAAGCACCGTTTGTGGCA+CGG | - | chr4.1:75741928-75741947 | None:intergenic | 50.0% |
!! | CTGATGATGGCGTCCGTAAT+TGG | + | chr4.1:75742050-75742069 | MS.gene87529:CDS | 50.0% |
!! | TACGTGCAGCATCGACTTTG+TGG | - | chr4.1:75741700-75741719 | None:intergenic | 50.0% |
AAATGTTAGTCACGGGGGGG+GGG | + | chr4.1:75742574-75742593 | MS.gene87529:intron | 55.0% | |
ATCCATGAGATCGGCTGGGA+AGG | - | chr4.1:75741444-75741463 | None:intergenic | 55.0% | |
CAAATGTTAGTCACGGGGGG+GGG | + | chr4.1:75742573-75742592 | MS.gene87529:intron | 55.0% | |
CAGACAAGGTGAGACCGTCA+AGG | - | chr4.1:75741481-75741500 | None:intergenic | 55.0% | |
CCAAGCACCAAAGGACGACT+TGG | - | chr4.1:75742404-75742423 | None:intergenic | 55.0% | |
CCTGCTTCCAAGTCGTCCTT+TGG | + | chr4.1:75742394-75742413 | MS.gene87529:CDS | 55.0% | |
CGGTCTCACCTTGTCTGAAG+AGG | + | chr4.1:75741484-75741503 | MS.gene87529:CDS | 55.0% | |
CTGGGAAGGAGGAAACGATG+AGG | - | chr4.1:75741430-75741449 | None:intergenic | 55.0% | |
CTTGCTGCTGATGGGGATGT+GGG | + | chr4.1:75742533-75742552 | MS.gene87529:CDS | 55.0% | |
GAAGGATCCATGAGATCGGC+TGG | - | chr4.1:75741449-75741468 | None:intergenic | 55.0% | |
GCAGGTAAGCCAAGCACCAA+AGG | - | chr4.1:75742413-75742432 | None:intergenic | 55.0% | |
! | ACTTGCTGCTGATGGGGATG+TGG | + | chr4.1:75742532-75742551 | MS.gene87529:CDS | 55.0% |
! | CCAAAGGACGACTTGGAAGC+AGG | - | chr4.1:75742397-75742416 | None:intergenic | 55.0% |
!! | CCAAGTCGTCCTTTGGTGCT+TGG | + | chr4.1:75742401-75742420 | MS.gene87529:CDS | 55.0% |
AATGTTAGTCACGGGGGGGG+GGG | + | chr4.1:75742575-75742594 | MS.gene87529:intron | 60.0% | |
CATGAGATCGGCTGGGAAGG+AGG | - | chr4.1:75741441-75741460 | None:intergenic | 60.0% | |
CTCCTTCCCAGCCGATCTCA+TGG | + | chr4.1:75741439-75741458 | MS.gene87529:CDS | 60.0% | |
GGCCGAACTGCAGCTACTGA+AGG | + | chr4.1:75742191-75742210 | MS.gene87529:CDS | 60.0% | |
TGGCGTGTCCGTGCCACAAA+CGG | + | chr4.1:75741917-75741936 | MS.gene87529:CDS | 60.0% | |
ATGTTAGTCACGGGGGGGGG+GGG | + | chr4.1:75742576-75742595 | MS.gene87529:intron | 65.0% | |
! | CGTGCGCTGGCCGTTCAGAA+TGG | + | chr4.1:75742503-75742522 | MS.gene87529:CDS | 65.0% |
TGTTAGTCACGGGGGGGGGG+GGG | + | chr4.1:75742577-75742596 | MS.gene87529:intron | 70.0% | |
GTTAGTCACGGGGGGGGGGG+GGG | + | chr4.1:75742578-75742597 | MS.gene87529:intron | 75.0% | |
TTAGTCACGGGGGGGGGGGG+GGG | + | chr4.1:75742579-75742598 | MS.gene87529:intron | 75.0% | |
! | TAGTCACGGGGGGGGGGGGG+GGG | + | chr4.1:75742580-75742599 | MS.gene87529:intron | 80.0% |
! | AGTCACGGGGGGGGGGGGGG+GGG | + | chr4.1:75742581-75742600 | MS.gene87529:intron | 85.0% |
! | GTCACGGGGGGGGGGGGGGG+GGG | + | chr4.1:75742582-75742601 | MS.gene87529:intron | 90.0% |
! | TCACGGGGGGGGGGGGGGGG+GGG | + | chr4.1:75742583-75742602 | MS.gene87529:intron | 90.0% |
! | ACGGGGGGGGGGGGGGGGGG+GGG | + | chr4.1:75742585-75742604 | MS.gene87529:intron | 95.0% |
! | CACGGGGGGGGGGGGGGGGG+GGG | + | chr4.1:75742584-75742603 | MS.gene87529:intron | 95.0% |
! | GGGGGGGGGGGGGGGGGGAG+GGG | + | chr4.1:75742592-75742611 | MS.gene87529:intron | 95.0% |
! | GGGGGGGGGGGGGGGGGGGA+GGG | + | chr4.1:75742591-75742610 | MS.gene87529:intron | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 75741377 | 75742665 | 75741377 | ID=MS.gene87529 |
chr4.1 | mRNA | 75741377 | 75742665 | 75741377 | ID=MS.gene87529.t1;Parent=MS.gene87529 |
chr4.1 | exon | 75741377 | 75742090 | 75741377 | ID=MS.gene87529.t1.exon1;Parent=MS.gene87529.t1 |
chr4.1 | CDS | 75741377 | 75742090 | 75741377 | ID=cds.MS.gene87529.t1;Parent=MS.gene87529.t1 |
chr4.1 | exon | 75742176 | 75742562 | 75742176 | ID=MS.gene87529.t1.exon2;Parent=MS.gene87529.t1 |
chr4.1 | CDS | 75742176 | 75742562 | 75742176 | ID=cds.MS.gene87529.t1;Parent=MS.gene87529.t1 |
chr4.1 | exon | 75742648 | 75742665 | 75742648 | ID=MS.gene87529.t1.exon3;Parent=MS.gene87529.t1 |
chr4.1 | CDS | 75742648 | 75742665 | 75742648 | ID=cds.MS.gene87529.t1;Parent=MS.gene87529.t1 |
Gene Sequence |
Protein sequence |