AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87529


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87529.t1 MTR_3g053920 49.398 332 76 5 28 319 1 280 2.22e-90 273
MS.gene87529.t1 MTR_2g061500 84.158 101 16 0 28 128 1 101 3.65e-57 183
MS.gene87529.t1 MTR_4g103530 59.574 94 13 1 82 150 1 94 1.13e-28 110
MS.gene87529.t1 MTR_6g033215 31.579 171 90 2 58 201 124 294 9.11e-24 100
MS.gene87529.t1 MTR_0010s0370 33.146 178 82 5 35 179 4 177 2.18e-22 93.6
MS.gene87529.t1 MTR_0010s0350 33.146 178 82 5 35 179 4 177 2.18e-22 93.6
MS.gene87529.t1 MTR_8g463110 53.211 109 49 1 263 369 2 110 1.63e-21 96.7
MS.gene87529.t1 MTR_7g011710 50.588 85 17 1 82 141 1 85 3.63e-20 86.7
MS.gene87529.t1 MTR_6g053230 27.485 171 97 5 11 178 13 159 2.75e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATGATGGCGTCCGTAAT+TGG 0.182036 4.1:+75742050 MS.gene87529:CDS
AGAAGCCATCAGATGTATTT+TGG 0.196323 4.1:-75742345 None:intergenic
CATCGACTTTGTGGTGAAAT+TGG 0.201083 4.1:-75741688 None:intergenic
ATTCTTGAACACTGTCTTAT+TGG 0.223174 4.1:+75741548 MS.gene87529:CDS
AGACATACGCTTGCTGAAAT+AGG 0.265838 4.1:-75741603 None:intergenic
CCTATGCCTTGACCTACTTT+TGG 0.278124 4.1:-75741788 None:intergenic
CGAAAGGCAGACCGTGAATA+TGG 0.313876 4.1:-75741754 None:intergenic
CCAAGTCGTCCTTTGGTGCT+TGG 0.331606 4.1:+75742401 MS.gene87529:CDS
CAGGTTCAGTTTCAAGGTTA+AGG 0.338792 4.1:-75741514 None:intergenic
CATATTCACGGTCTGCCTTT+CGG 0.343325 4.1:+75741755 MS.gene87529:CDS
AGGTTCAGTTTCAAGGTTAA+GGG 0.345516 4.1:-75741513 None:intergenic
TGATGATGGCGTCCGTAATT+GGG 0.358339 4.1:+75742051 MS.gene87529:CDS
CAAGGCATAGGAAGCTTCTT+AGG 0.376769 4.1:+75741800 MS.gene87529:CDS
TTTAGCTAGCACCGCATTAT+GGG 0.386461 4.1:-75742297 None:intergenic
TCAAGTCAGCTCCCCAATTA+CGG 0.392301 4.1:-75742063 None:intergenic
CCTGCTTCCAAGTCGTCCTT+TGG 0.398210 4.1:+75742394 MS.gene87529:CDS
GCAAGCGTATGTCTCGAGTA+TGG 0.401222 4.1:+75741612 MS.gene87529:CDS
TCAAGAATGGCAACAGTATC+AGG 0.401444 4.1:-75741533 None:intergenic
CAGTATCAGGTTCAGTTTCA+AGG 0.407871 4.1:-75741520 None:intergenic
CTCCTTCCCAGCCGATCTCA+TGG 0.419919 4.1:+75741439 MS.gene87529:CDS
TATGACAATTTCCATATTCA+CGG 0.420305 4.1:+75741743 MS.gene87529:CDS
TTCGAATTAGATTCTGATGA+TGG 0.422237 4.1:+75742037 MS.gene87529:CDS
TGTCACAGGTGTGGATTGAT+TGG 0.423731 4.1:+75741986 MS.gene87529:CDS
AGGTGAGACCGTCAAGGTTA+AGG 0.433080 4.1:-75741472 None:intergenic
CTTTGTGGTGAAATTGGAAA+AGG 0.446795 4.1:-75741682 None:intergenic
ACTTGCTGCTGATGGGGATG+TGG 0.447679 4.1:+75742532 MS.gene87529:CDS
GAAGGATCCATGAGATCGGC+TGG 0.451674 4.1:-75741446 None:intergenic
TCATTAGATTCACTTGAGAA+TGG 0.464881 4.1:-75742437 None:intergenic
GGAGAAACACTTGCTGCTGA+TGG 0.471233 4.1:+75742524 MS.gene87529:CDS
CGGTCTCACCTTGTCTGAAG+AGG 0.477786 4.1:+75741484 MS.gene87529:CDS
TGCTTCCAAAATACATCTGA+TGG 0.493296 4.1:+75742340 MS.gene87529:CDS
GTAACGGTAAGACACTGATT+TGG 0.494267 4.1:-75741660 None:intergenic
ATGTCTCGAGTATGGAAGTC+AGG 0.495544 4.1:+75741620 MS.gene87529:CDS
AGTAACAAAAGCACCGTTTG+TGG 0.497986 4.1:-75741930 None:intergenic
TACGTGCAGCATCGACTTTG+TGG 0.498421 4.1:-75741697 None:intergenic
CCTTCCAACCTTAACCTTGA+CGG 0.500001 4.1:+75741464 MS.gene87529:CDS
AGGTGATGAACAAATTGTAA+TGG 0.502006 4.1:+75742646 MS.gene87529:intron
GAGAAACACTTGCTGCTGAT+GGG 0.502471 4.1:+75742525 MS.gene87529:CDS
CGTGCGCTGGCCGTTCAGAA+TGG 0.503482 4.1:+75742503 MS.gene87529:CDS
CCAAGCACCAAAGGACGACT+TGG 0.504912 4.1:-75742401 None:intergenic
AATAAGACAGTGTTCAAGAA+TGG 0.511332 4.1:-75741546 None:intergenic
TGGCGTGTCCGTGCCACAAA+CGG 0.511841 4.1:+75741917 MS.gene87529:CDS
CACCTTCAGTAGCTGCAGTT+CGG 0.513939 4.1:-75742193 None:intergenic
GCAGGTAAGCCAAGCACCAA+AGG 0.518575 4.1:-75742410 None:intergenic
CCAAAGGACGACTTGGAAGC+AGG 0.528272 4.1:-75742394 None:intergenic
TCACTTGAGAATGGAGCAGC+AGG 0.528382 4.1:-75742428 None:intergenic
AGTATGGAAGTCAGGAAAGA+AGG 0.532104 4.1:+75741628 MS.gene87529:CDS
GGATTCATCCAACCAAAAGT+AGG 0.533518 4.1:+75741776 MS.gene87529:CDS
ATCCATGAGATCGGCTGGGA+AGG 0.534590 4.1:-75741441 None:intergenic
TGCTGCACGTATTCTTGATG+AGG 0.537306 4.1:+75741709 MS.gene87529:CDS
GAAGAAAAGAAAGCGTGCGC+TGG 0.537727 4.1:+75742490 MS.gene87529:CDS
AACTGCAGCTACTGAAGGTG+TGG 0.539423 4.1:+75742196 MS.gene87529:CDS
CTGATGGCTTCTTCTTCCAC+AGG 0.544870 4.1:+75742356 MS.gene87529:CDS
GTATTCTTGATGAGGGTCCA+TGG 0.545558 4.1:+75741717 MS.gene87529:CDS
GATGATGGCGTCCGTAATTG+GGG 0.557620 4.1:+75742052 MS.gene87529:CDS
CTTGCTGCTGATGGGGATGT+GGG 0.559659 4.1:+75742533 MS.gene87529:CDS
CATGAGATCGGCTGGGAAGG+AGG 0.562053 4.1:-75741438 None:intergenic
GGTCTCACCTTGTCTGAAGA+GGG 0.564346 4.1:+75741485 MS.gene87529:CDS
CCGTCAAGGTTAAGGTTGGA+AGG 0.575288 4.1:-75741464 None:intergenic
AGCGACTCTGACACGCATAT+AGG 0.575736 4.1:-75741864 None:intergenic
GAGACCGTCAAGGTTAAGGT+TGG 0.575959 4.1:-75741468 None:intergenic
AGAATCTAATTCGAACAACT+CGG 0.580030 4.1:-75742029 None:intergenic
TGGGAAGGAGGAAACGATGA+GGG 0.589219 4.1:-75741426 None:intergenic
CAAAAGCACCGTTTGTGGCA+CGG 0.590707 4.1:-75741925 None:intergenic
GGTGAAATTGGAAAAGGTAA+CGG 0.593206 4.1:-75741676 None:intergenic
TGGAAATTGTCATACAGCCA+TGG 0.595064 4.1:-75741734 None:intergenic
GAATCTAATTCGAACAACTC+GGG 0.601829 4.1:-75742028 None:intergenic
GCAAGGAAACAGAGGAGACT+CGG 0.606376 4.1:-75741398 None:intergenic
GATGACATACAAGAGGTAAG+TGG 0.607658 4.1:+75742458 MS.gene87529:CDS
GGCCGAACTGCAGCTACTGA+AGG 0.610869 4.1:+75742191 MS.gene87529:CDS
AGAAACACTTGCTGCTGATG+GGG 0.612523 4.1:+75742526 MS.gene87529:CDS
AAACGATGAGGGAAACAGCA+AGG 0.612654 4.1:-75741415 None:intergenic
ATCCAACCAAAAGTAGGTCA+AGG 0.617189 4.1:+75741782 MS.gene87529:CDS
CTGGGAAGGAGGAAACGATG+AGG 0.617559 4.1:-75741427 None:intergenic
GTTGGAAGGATCCATGAGAT+CGG 0.617990 4.1:-75741450 None:intergenic
GCTGCACGTATTCTTGATGA+GGG 0.620115 4.1:+75741710 MS.gene87529:CDS
CCAAAAGTAGGTCAAGGCAT+AGG 0.620618 4.1:+75741788 MS.gene87529:CDS
CATACAAGAGGTAAGTGGCT+CGG 0.622041 4.1:+75742463 MS.gene87529:CDS
GCTAGTAGCTGAAGTACCTG+TGG 0.624706 4.1:-75742372 None:intergenic
AAGTGTTTCTCCATTCTGAA+CGG 0.629068 4.1:-75742513 None:intergenic
GGGAAACAGCAAGGAAACAG+AGG 0.631035 4.1:-75741406 None:intergenic
ATCTAATGATGACATACAAG+AGG 0.639639 4.1:+75742451 MS.gene87529:CDS
AAGGATCCATGAGATCGGCT+GGG 0.652513 4.1:-75741445 None:intergenic
ATTGAATCTCACGATCAGCA+AGG 0.657379 4.1:-75741577 None:intergenic
ACTGCAGCTACTGAAGGTGT+GGG 0.661239 4.1:+75742197 MS.gene87529:CDS
GGTTAAACCCTCTTCAGACA+AGG 0.669126 4.1:-75741492 None:intergenic
CAGACAAGGTGAGACCGTCA+AGG 0.670109 4.1:-75741478 None:intergenic
TTTGGTTGGATGAATCCGAA+AGG 0.672828 4.1:-75741770 None:intergenic
TGTGCTTGCTGCCCATAATG+CGG 0.690639 4.1:+75742286 MS.gene87529:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTAAATATGAAAAATT+GGG + chr4.1:75741956-75741975 MS.gene87529:CDS 10.0%
!! TAACTTTAAATATGAAAAAT+TGG + chr4.1:75741955-75741974 MS.gene87529:CDS 10.0%
! CGGGGGGGGGGGGGGGGGGG+GGG + chr4.1:75742586-75742605 MS.gene87529:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+AGG + chr4.1:75742587-75742606 MS.gene87529:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4.1:75742587-75742606 MS.gene87529:intron 100.0%
! ATTGATATGAATGTAATTGC+CGG + chr4.1:75742617-75742636 MS.gene87529:intron 25.0%
! TATGACAATTTCCATATTCA+CGG + chr4.1:75741743-75741762 MS.gene87529:CDS 25.0%
AATAAGACAGTGTTCAAGAA+TGG - chr4.1:75741549-75741568 None:intergenic 30.0%
AGAATCTAATTCGAACAACT+CGG - chr4.1:75742032-75742051 None:intergenic 30.0%
ATAGGTTCAAATGTTAGTCA+CGG + chr4.1:75742566-75742585 MS.gene87529:intron 30.0%
ATCTAATGATGACATACAAG+AGG + chr4.1:75742451-75742470 MS.gene87529:CDS 30.0%
ATTCTTGAACACTGTCTTAT+TGG + chr4.1:75741548-75741567 MS.gene87529:CDS 30.0%
TCATTAGATTCACTTGAGAA+TGG - chr4.1:75742440-75742459 None:intergenic 30.0%
TTCGAATTAGATTCTGATGA+TGG + chr4.1:75742037-75742056 MS.gene87529:CDS 30.0%
! ACAATTTGTTCATCACCTAA+AGG - chr4.1:75742644-75742663 None:intergenic 30.0%
! CAATTTGTTCATCACCTAAA+GGG - chr4.1:75742643-75742662 None:intergenic 30.0%
! GATGTGGGAAATTTTGTAAT+AGG + chr4.1:75742548-75742567 MS.gene87529:intron 30.0%
AAGTGTTTCTCCATTCTGAA+CGG - chr4.1:75742516-75742535 None:intergenic 35.0%
AGGTTCAGTTTCAAGGTTAA+GGG - chr4.1:75741516-75741535 None:intergenic 35.0%
CTTTGTGGTGAAATTGGAAA+AGG - chr4.1:75741685-75741704 None:intergenic 35.0%
GAATCTAATTCGAACAACTC+GGG - chr4.1:75742031-75742050 None:intergenic 35.0%
GGTGAAATTGGAAAAGGTAA+CGG - chr4.1:75741679-75741698 None:intergenic 35.0%
GTGCTAGCTAAAAAAGGTAA+AGG + chr4.1:75742308-75742327 MS.gene87529:CDS 35.0%
TAGGTTCAAATGTTAGTCAC+GGG + chr4.1:75742567-75742586 MS.gene87529:intron 35.0%
TGCTTCCAAAATACATCTGA+TGG + chr4.1:75742340-75742359 MS.gene87529:CDS 35.0%
! AGAAGCCATCAGATGTATTT+TGG - chr4.1:75742348-75742367 None:intergenic 35.0%
ACTTGAAACCAGTTACGCAA+AGG + chr4.1:75742080-75742099 MS.gene87529:intron 40.0%
AGGTTCAAATGTTAGTCACG+GGG + chr4.1:75742568-75742587 MS.gene87529:intron 40.0%
AGTATGGAAGTCAGGAAAGA+AGG + chr4.1:75741628-75741647 MS.gene87529:CDS 40.0%
ATCCAACCAAAAGTAGGTCA+AGG + chr4.1:75741782-75741801 MS.gene87529:CDS 40.0%
ATCTTGCAACCAACGATTTG+TGG - chr4.1:75742119-75742138 None:intergenic 40.0%
ATTGAATCTCACGATCAGCA+AGG - chr4.1:75741580-75741599 None:intergenic 40.0%
CAGGTTCAGTTTCAAGGTTA+AGG - chr4.1:75741517-75741536 None:intergenic 40.0%
CAGTATCAGGTTCAGTTTCA+AGG - chr4.1:75741523-75741542 None:intergenic 40.0%
GATGACATACAAGAGGTAAG+TGG + chr4.1:75742458-75742477 MS.gene87529:CDS 40.0%
GGATTCATCCAACCAAAAGT+AGG + chr4.1:75741776-75741795 MS.gene87529:CDS 40.0%
GTTACAAACCTTTGCGTAAC+TGG - chr4.1:75742091-75742110 None:intergenic 40.0%
GTTTGATGCAACATAGAAGC+AGG - chr4.1:75742148-75742167 None:intergenic 40.0%
TCAAGAATGGCAACAGTATC+AGG - chr4.1:75741536-75741555 None:intergenic 40.0%
TGCAACATAGAAGCAGGAAT+AGG - chr4.1:75742142-75742161 None:intergenic 40.0%
TGGAAATTGTCATACAGCCA+TGG - chr4.1:75741737-75741756 None:intergenic 40.0%
TTTAGCTAGCACCGCATTAT+GGG - chr4.1:75742300-75742319 None:intergenic 40.0%
TTTGGTTGGATGAATCCGAA+AGG - chr4.1:75741773-75741792 None:intergenic 40.0%
! AATGCGGTGCTAGCTAAAAA+AGG + chr4.1:75742302-75742321 MS.gene87529:CDS 40.0%
! AATTGGGTGTGTTTTGTCAC+AGG + chr4.1:75741972-75741991 MS.gene87529:CDS 40.0%
! AGACATACGCTTGCTGAAAT+AGG - chr4.1:75741606-75741625 None:intergenic 40.0%
! GTAACGGTAAGACACTGATT+TGG - chr4.1:75741663-75741682 None:intergenic 40.0%
!! AGTAACAAAAGCACCGTTTG+TGG - chr4.1:75741933-75741952 None:intergenic 40.0%
!! CATCGACTTTGTGGTGAAAT+TGG - chr4.1:75741691-75741710 None:intergenic 40.0%
!! TTTTAGCTAGCACCGCATTA+TGG - chr4.1:75742301-75742320 None:intergenic 40.0%
AAACGATGAGGGAAACAGCA+AGG - chr4.1:75741418-75741437 None:intergenic 45.0%
AATGTAATTGCCGGCCCTTT+AGG + chr4.1:75742626-75742645 MS.gene87529:intron 45.0%
ATGTCTCGAGTATGGAAGTC+AGG + chr4.1:75741620-75741639 MS.gene87529:CDS 45.0%
CAAGGCATAGGAAGCTTCTT+AGG + chr4.1:75741800-75741819 MS.gene87529:CDS 45.0%
CATACAAGAGGTAAGTGGCT+CGG + chr4.1:75742463-75742482 MS.gene87529:CDS 45.0%
CATATTCACGGTCTGCCTTT+CGG + chr4.1:75741755-75741774 MS.gene87529:CDS 45.0%
CCAAAAGTAGGTCAAGGCAT+AGG + chr4.1:75741788-75741807 MS.gene87529:CDS 45.0%
CCTTCCAACCTTAACCTTGA+CGG + chr4.1:75741464-75741483 MS.gene87529:CDS 45.0%
CTGTCCCACTGAAAAAAGAG+TGG + chr4.1:75741897-75741916 MS.gene87529:CDS 45.0%
GCTGCACGTATTCTTGATGA+GGG + chr4.1:75741710-75741729 MS.gene87529:CDS 45.0%
GGTTAAACCCTCTTCAGACA+AGG - chr4.1:75741495-75741514 None:intergenic 45.0%
GGTTCAAATGTTAGTCACGG+GGG + chr4.1:75742569-75742588 MS.gene87529:intron 45.0%
GTATTCTTGATGAGGGTCCA+TGG + chr4.1:75741717-75741736 MS.gene87529:CDS 45.0%
GTTCAAATGTTAGTCACGGG+GGG + chr4.1:75742570-75742589 MS.gene87529:intron 45.0%
GTTGGAAGGATCCATGAGAT+CGG - chr4.1:75741453-75741472 None:intergenic 45.0%
TCAAGTCAGCTCCCCAATTA+CGG - chr4.1:75742066-75742085 None:intergenic 45.0%
TGCTGCACGTATTCTTGATG+AGG + chr4.1:75741709-75741728 MS.gene87529:CDS 45.0%
TTCAAATGTTAGTCACGGGG+GGG + chr4.1:75742571-75742590 MS.gene87529:intron 45.0%
TTGTTCATCACCTAAAGGGC+CGG - chr4.1:75742639-75742658 None:intergenic 45.0%
! AGAAACACTTGCTGCTGATG+GGG + chr4.1:75742526-75742545 MS.gene87529:CDS 45.0%
! CCTATGCCTTGACCTACTTT+TGG - chr4.1:75741791-75741810 None:intergenic 45.0%
! GAGAAACACTTGCTGCTGAT+GGG + chr4.1:75742525-75742544 MS.gene87529:CDS 45.0%
! TGTCACAGGTGTGGATTGAT+TGG + chr4.1:75741986-75742005 MS.gene87529:CDS 45.0%
!! TGATGATGGCGTCCGTAATT+GGG + chr4.1:75742051-75742070 MS.gene87529:CDS 45.0%
!! TGCCTTGACCTACTTTTGGT+TGG - chr4.1:75741787-75741806 None:intergenic 45.0%
!!! ACACGCCACTCTTTTTTCAG+TGG - chr4.1:75741905-75741924 None:intergenic 45.0%
!!! ACCAAGCAAGCTGCTTTTGT+TGG + chr4.1:75742170-75742189 MS.gene87529:intron 45.0%
!!! CACGCCACTCTTTTTTCAGT+GGG - chr4.1:75741904-75741923 None:intergenic 45.0%
AACTGCAGCTACTGAAGGTG+TGG + chr4.1:75742196-75742215 MS.gene87529:CDS 50.0%
AAGGATCCATGAGATCGGCT+GGG - chr4.1:75741448-75741467 None:intergenic 50.0%
AGCGACTCTGACACGCATAT+AGG - chr4.1:75741867-75741886 None:intergenic 50.0%
AGGTGAGACCGTCAAGGTTA+AGG - chr4.1:75741475-75741494 None:intergenic 50.0%
CAACCAACGATTTGTGGCAG+CGG - chr4.1:75742113-75742132 None:intergenic 50.0%
CACCTTCAGTAGCTGCAGTT+CGG - chr4.1:75742196-75742215 None:intergenic 50.0%
CCGTCAAGGTTAAGGTTGGA+AGG - chr4.1:75741467-75741486 None:intergenic 50.0%
CGAAAGGCAGACCGTGAATA+TGG - chr4.1:75741757-75741776 None:intergenic 50.0%
CTGATGGCTTCTTCTTCCAC+AGG + chr4.1:75742356-75742375 MS.gene87529:CDS 50.0%
GAGACCGTCAAGGTTAAGGT+TGG - chr4.1:75741471-75741490 None:intergenic 50.0%
GCAAGCGTATGTCTCGAGTA+TGG + chr4.1:75741612-75741631 MS.gene87529:CDS 50.0%
GCAAGGAAACAGAGGAGACT+CGG - chr4.1:75741401-75741420 None:intergenic 50.0%
GGGAAACAGCAAGGAAACAG+AGG - chr4.1:75741409-75741428 None:intergenic 50.0%
GGTCTCACCTTGTCTGAAGA+GGG + chr4.1:75741485-75741504 MS.gene87529:CDS 50.0%
TAACCGCTGCCACAAATCGT+TGG + chr4.1:75742107-75742126 MS.gene87529:intron 50.0%
TCAAATGTTAGTCACGGGGG+GGG + chr4.1:75742572-75742591 MS.gene87529:intron 50.0%
TCACTTGAGAATGGAGCAGC+AGG - chr4.1:75742431-75742450 None:intergenic 50.0%
TGGGAAGGAGGAAACGATGA+GGG - chr4.1:75741429-75741448 None:intergenic 50.0%
! ACTGCAGCTACTGAAGGTGT+GGG + chr4.1:75742197-75742216 MS.gene87529:CDS 50.0%
! GAAGAAAAGAAAGCGTGCGC+TGG + chr4.1:75742490-75742509 MS.gene87529:CDS 50.0%
! GATGATGGCGTCCGTAATTG+GGG + chr4.1:75742052-75742071 MS.gene87529:CDS 50.0%
! GCCAACAAAAGCAGCTTGCT+TGG - chr4.1:75742174-75742193 None:intergenic 50.0%
! GCTAGTAGCTGAAGTACCTG+TGG - chr4.1:75742375-75742394 None:intergenic 50.0%
! GGAGAAACACTTGCTGCTGA+TGG + chr4.1:75742524-75742543 MS.gene87529:CDS 50.0%
! GGTGTGTTTTGTCACAGGTG+TGG + chr4.1:75741977-75741996 MS.gene87529:CDS 50.0%
! TGTGCTTGCTGCCCATAATG+CGG + chr4.1:75742286-75742305 MS.gene87529:CDS 50.0%
!! CAAAAGCACCGTTTGTGGCA+CGG - chr4.1:75741928-75741947 None:intergenic 50.0%
!! CTGATGATGGCGTCCGTAAT+TGG + chr4.1:75742050-75742069 MS.gene87529:CDS 50.0%
!! TACGTGCAGCATCGACTTTG+TGG - chr4.1:75741700-75741719 None:intergenic 50.0%
AAATGTTAGTCACGGGGGGG+GGG + chr4.1:75742574-75742593 MS.gene87529:intron 55.0%
ATCCATGAGATCGGCTGGGA+AGG - chr4.1:75741444-75741463 None:intergenic 55.0%
CAAATGTTAGTCACGGGGGG+GGG + chr4.1:75742573-75742592 MS.gene87529:intron 55.0%
CAGACAAGGTGAGACCGTCA+AGG - chr4.1:75741481-75741500 None:intergenic 55.0%
CCAAGCACCAAAGGACGACT+TGG - chr4.1:75742404-75742423 None:intergenic 55.0%
CCTGCTTCCAAGTCGTCCTT+TGG + chr4.1:75742394-75742413 MS.gene87529:CDS 55.0%
CGGTCTCACCTTGTCTGAAG+AGG + chr4.1:75741484-75741503 MS.gene87529:CDS 55.0%
CTGGGAAGGAGGAAACGATG+AGG - chr4.1:75741430-75741449 None:intergenic 55.0%
CTTGCTGCTGATGGGGATGT+GGG + chr4.1:75742533-75742552 MS.gene87529:CDS 55.0%
GAAGGATCCATGAGATCGGC+TGG - chr4.1:75741449-75741468 None:intergenic 55.0%
GCAGGTAAGCCAAGCACCAA+AGG - chr4.1:75742413-75742432 None:intergenic 55.0%
! ACTTGCTGCTGATGGGGATG+TGG + chr4.1:75742532-75742551 MS.gene87529:CDS 55.0%
! CCAAAGGACGACTTGGAAGC+AGG - chr4.1:75742397-75742416 None:intergenic 55.0%
!! CCAAGTCGTCCTTTGGTGCT+TGG + chr4.1:75742401-75742420 MS.gene87529:CDS 55.0%
AATGTTAGTCACGGGGGGGG+GGG + chr4.1:75742575-75742594 MS.gene87529:intron 60.0%
CATGAGATCGGCTGGGAAGG+AGG - chr4.1:75741441-75741460 None:intergenic 60.0%
CTCCTTCCCAGCCGATCTCA+TGG + chr4.1:75741439-75741458 MS.gene87529:CDS 60.0%
GGCCGAACTGCAGCTACTGA+AGG + chr4.1:75742191-75742210 MS.gene87529:CDS 60.0%
TGGCGTGTCCGTGCCACAAA+CGG + chr4.1:75741917-75741936 MS.gene87529:CDS 60.0%
ATGTTAGTCACGGGGGGGGG+GGG + chr4.1:75742576-75742595 MS.gene87529:intron 65.0%
! CGTGCGCTGGCCGTTCAGAA+TGG + chr4.1:75742503-75742522 MS.gene87529:CDS 65.0%
TGTTAGTCACGGGGGGGGGG+GGG + chr4.1:75742577-75742596 MS.gene87529:intron 70.0%
GTTAGTCACGGGGGGGGGGG+GGG + chr4.1:75742578-75742597 MS.gene87529:intron 75.0%
TTAGTCACGGGGGGGGGGGG+GGG + chr4.1:75742579-75742598 MS.gene87529:intron 75.0%
! TAGTCACGGGGGGGGGGGGG+GGG + chr4.1:75742580-75742599 MS.gene87529:intron 80.0%
! AGTCACGGGGGGGGGGGGGG+GGG + chr4.1:75742581-75742600 MS.gene87529:intron 85.0%
! GTCACGGGGGGGGGGGGGGG+GGG + chr4.1:75742582-75742601 MS.gene87529:intron 90.0%
! TCACGGGGGGGGGGGGGGGG+GGG + chr4.1:75742583-75742602 MS.gene87529:intron 90.0%
! ACGGGGGGGGGGGGGGGGGG+GGG + chr4.1:75742585-75742604 MS.gene87529:intron 95.0%
! CACGGGGGGGGGGGGGGGGG+GGG + chr4.1:75742584-75742603 MS.gene87529:intron 95.0%
! GGGGGGGGGGGGGGGGGGAG+GGG + chr4.1:75742592-75742611 MS.gene87529:intron 95.0%
! GGGGGGGGGGGGGGGGGGGA+GGG + chr4.1:75742591-75742610 MS.gene87529:intron 95.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 75741377 75742665 75741377 ID=MS.gene87529
chr4.1 mRNA 75741377 75742665 75741377 ID=MS.gene87529.t1;Parent=MS.gene87529
chr4.1 exon 75741377 75742090 75741377 ID=MS.gene87529.t1.exon1;Parent=MS.gene87529.t1
chr4.1 CDS 75741377 75742090 75741377 ID=cds.MS.gene87529.t1;Parent=MS.gene87529.t1
chr4.1 exon 75742176 75742562 75742176 ID=MS.gene87529.t1.exon2;Parent=MS.gene87529.t1
chr4.1 CDS 75742176 75742562 75742176 ID=cds.MS.gene87529.t1;Parent=MS.gene87529.t1
chr4.1 exon 75742648 75742665 75742648 ID=MS.gene87529.t1.exon3;Parent=MS.gene87529.t1
chr4.1 CDS 75742648 75742665 75742648 ID=cds.MS.gene87529.t1;Parent=MS.gene87529.t1
Gene Sequence

>MS.gene87529

ATGCGTTTTGTTGTTTCTAAACCGAGTCTCCTCTGTTTCCTTGCTGTTTCCCTCATCGTTTCCTCCTTCCCAGCCGATCTCATGGATCCTTCCAACCTTAACCTTGACGGTCTCACCTTGTCTGAAGAGGGTTTAACCCTTAACCTTGAAACTGAACCTGATACTGTTGCCATTCTTGAACACTGTCTTATTGGTCGAGTCCTTGCTGATCGTGAGATTCAATTTGCCTATTTCAGCAAGCGTATGTCTCGAGTATGGAAGTCAGGAAAGAAGGTTACGATCACCAAATCAGTGTCTTACCGTTACCTTTTCCAATTTCACCACAAAGTCGATGCTGCACGTATTCTTGATGAGGGTCCATGGCTGTATGACAATTTCCATATTCACGGTCTGCCTTTCGGATTCATCCAACCAAAAGTAGGTCAAGGCATAGGAAGCTTCTTAGGCACTTTCAAAGCATATGATAATCGCAACTCAATTCATAGTTCCTATATGCGTGTCAGAGTCGCTATTGATGTCACTGTCCCACTGAAAAAAGAGTGGCGTGTCCGTGCCACAAACGGTGCTTTTGTTACTGTTAACTTTAAATATGAAAAATTGGGTGTGTTTTGTCACAGGTGTGGATTGATTGGTCATACTGACAAAGTGTGTCCCGAGTTGTTCGAATTAGATTCTGATGATGGCGTCCGTAATTGGGGAGCTGACTTGAAACCAGTTACGCAAAGGTTTGTAACCGCTGCCACAAATCGTTGGTTGCAAGATCCTATTCCTGCTTCTATGTTGCATCAAACTCACCAAGCAAGCTGCTTTTGTTGGCCGAACTGCAGCTACTGAAGGTGTGGGAAATTATGCAACTTTCAATGATCGTAAGCTCACTCTTCAGACGCAACTTACTGCTATGCAACAAGATGTGCTTGCTGCCCATAATGCGGTGCTAGCTAAAAAAGGTAAAGGTGCAAATTCTGCTTCCAAAATACATCTGATGGCTTCTTCTTCCACAGGTACTTCAGCTACTAGCCTGCTTCCAAGTCGTCCTTTGGTGCTTGGCTTACCTGCTGCTCCATTCTCAAGTGAATCTAATGATGACATACAAGAGGTAAGTGGCTCGGATTTGAAGAAAAGAAAGCGTGCGCTGGCCGTTCAGAATGGAGAAACACTTGCTGCTGATGGGGATGTGGGAAATTTTGTAATAGGTTCAAATGTTAGTCACGGGGGGGGGGGGGGGGGGGGGGGAGGGGATATTGATATGAATGTAATTGCCGGCCCTTTAGGTGATGAACAAATTGTAA

Protein sequence

>MS.gene87529.t1

MRFVVSKPSLLCFLAVSLIVSSFPADLMDPSNLNLDGLTLSEEGLTLNLETEPDTVAILEHCLIGRVLADREIQFAYFSKRMSRVWKSGKKVTITKSVSYRYLFQFHHKVDAARILDEGPWLYDNFHIHGLPFGFIQPKVGQGIGSFLGTFKAYDNRNSIHSSYMRVRVAIDVTVPLKKEWRVRATNGAFVTVNFKYEKLGVFCHRCGLIGHTDKVCPELFELDSDDGVRNWGADLKPQAAFVGRTAATEGVGNYATFNDRKLTLQTQLTAMQQDVLAAHNAVLAKKGKGANSASKIHLMASSSTGTSATSLLPSRPLVLGLPAAPFSSESNDDIQEVSGSDLKKRKRALAVQNGETLAADGDVGNFVMNKL