AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008927

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008927.t1 MTR_1g100687 48.611 144 72 1 166 307 78 221 4.20e-45 154
MS.gene008927.t1 MTR_8g463110 42.286 175 97 1 166 336 142 316 3.45e-44 160
MS.gene008927.t1 MTR_4g020630 46.939 147 70 1 167 313 87 225 3.80e-39 145
MS.gene008927.t1 MTR_3g044860 43.243 148 58 1 166 313 34 155 2.02e-37 136
MS.gene008927.t1 MTR_0042s0130 44.521 146 81 0 166 311 181 326 3.00e-37 136
MS.gene008927.t1 MTR_6g009010 56.075 107 47 0 172 278 155 261 4.54e-37 134
MS.gene008927.t1 MTR_6g034215 36.723 177 86 3 166 336 164 320 5.21e-34 127
MS.gene008927.t1 MTR_8g470880 64.773 88 31 0 166 253 437 524 7.30e-33 128
MS.gene008927.t1 MTR_2g061500 36.290 124 79 0 3 126 4 127 4.36e-30 112
MS.gene008927.t1 MTR_3g053920 38.211 123 76 0 4 126 5 127 6.60e-28 110
MS.gene008927.t1 MTR_1g051330 34.899 149 92 2 166 312 297 442 9.40e-27 111
MS.gene008927.t1 MTR_2g018005 64.706 68 24 0 165 232 163 230 3.59e-25 101
MS.gene008927.t1 MTR_0114s0080 61.429 70 27 0 166 235 65 134 5.87e-25 98.6
MS.gene008927.t1 MTR_2g055450 38.356 146 75 1 166 311 198 328 2.77e-23 99.8
MS.gene008927.t1 MTR_6g034715 54.930 71 32 0 166 236 70 140 7.24e-23 94.0
MS.gene008927.t1 MTR_1g062290 51.515 66 32 0 210 275 1 66 3.86e-19 84.0
MS.gene008927.t1 MTR_0112s0060 41.837 98 53 1 138 231 11 108 7.13e-18 79.0
MS.gene008927.t1 MTR_6g033215 32.692 104 70 0 24 127 118 221 4.08e-16 77.8
MS.gene008927.t1 MTR_0123s0050 63.265 49 18 0 177 225 1 49 8.90e-16 71.6
MS.gene008927.t1 MTR_6g046587 39.362 94 56 1 166 259 192 284 1.09e-14 73.6
MS.gene008927.t1 MTR_1g036720 27.778 108 76 1 6 111 3 110 4.79e-13 65.1
MS.gene008927.t1 MTR_7g011710 35.616 73 47 0 54 126 1 73 1.82e-12 64.7
MS.gene008927.t1 MTR_4g122570 31.579 95 64 1 172 266 339 432 6.49e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 72 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTTCTCTTTACTAAAAT+TGG 0.152585 8.2:-34295264 None:intergenic
TATACTTTCAATGTTCAAAT+TGG 0.267041 8.2:-34294195 None:intergenic
TACTAAAATTGGATACTTAT+CGG 0.315941 8.2:-34295253 None:intergenic
AACATTGAAAGTATAGCAAT+TGG 0.362533 8.2:+34294203 MS.gene008927:CDS
TTGAAAGTCTAGGAAATGAT+TGG 0.367794 8.2:+34296401 MS.gene008927:intron
AAAGACTTTCGACCTCTTTG+TGG 0.367957 8.2:-34295297 None:intergenic
AAGCATTAGCGTCCATTCTC+AGG 0.371044 8.2:-34294241 None:intergenic
ATCTTTGACGTCAGAGGTTG+TGG 0.389230 8.2:+34296441 MS.gene008927:CDS
CTTTCAAATTTGAAAATGCT+TGG 0.389376 8.2:+34295316 MS.gene008927:CDS
CAAAGGTTTGGTTGTTATAC+CGG 0.409436 8.2:+34294370 MS.gene008927:CDS
GTTGAGCACGTGCTAAATAA+AGG 0.410148 8.2:+34294437 MS.gene008927:CDS
AATAGTTGGTTGAATCAAAC+TGG 0.412071 8.2:+34295372 MS.gene008927:CDS
ATCATTACCAATAGACATCT+TGG 0.417408 8.2:-34296471 None:intergenic
TATGAACGACCTAGATCTAT+TGG 0.436779 8.2:+34294532 MS.gene008927:CDS
GAGCTTTAGCCAACGAAGCT+TGG 0.448431 8.2:+34295181 MS.gene008927:CDS
CATCAAGTGGATGAGCCAAC+TGG 0.451725 8.2:-34294415 None:intergenic
GACCGATCAGGCGGTGATCA+AGG 0.455297 8.2:-34294277 None:intergenic
ATCATATCCAAGATGTCTAT+TGG 0.457410 8.2:+34296464 MS.gene008927:CDS
ATAACAACCAAACCTTTGCC+TGG 0.469640 8.2:-34294365 None:intergenic
AGTATAGCAATTGGAGAAGA+GGG 0.474750 8.2:+34294212 MS.gene008927:CDS
AGACGAAGGTTTGAATGAAA+TGG 0.477367 8.2:+34295344 MS.gene008927:CDS
TGGTCTTATTGATATTCATA+TGG 0.483141 8.2:+34295092 MS.gene008927:CDS
GTGGAATCCAGGCAAAGGTT+TGG 0.483437 8.2:+34294358 MS.gene008927:CDS
CAGTCAAAATACGACCGATC+AGG 0.485687 8.2:-34294289 None:intergenic
GGAGTAAAACTCATTGCAAT+CGG 0.485904 8.2:+34295445 MS.gene008927:CDS
GTGGATGAGCCAACTGGAAA+AGG 0.489852 8.2:-34294409 None:intergenic
CGCTAATGCTTCTGACATGC+AGG 0.501933 8.2:+34294253 MS.gene008927:CDS
AGAGGGTATGACCCTGAGAA+TGG 0.504943 8.2:+34294229 MS.gene008927:CDS
GGAATTGCACCAATAGATCT+AGG 0.506407 8.2:-34294541 None:intergenic
CGGCAAGCTGTCAAAGATGC+TGG 0.509722 8.2:+34295072 MS.gene008927:intron
TTAGTGATCTAGTTTGCTCA+TGG 0.513521 8.2:-34294562 None:intergenic
TTCTCGTGGCTCAAAAGCTT+AGG 0.513526 8.2:+34295126 MS.gene008927:CDS
ATGAAATGGTGCAAAATAGT+TGG 0.515524 8.2:+34295358 MS.gene008927:CDS
AAATATCTGCACTCACGTCT+AGG 0.524855 8.2:+34294329 MS.gene008927:CDS
GCTATTCCCTCATGCTCGGT+TGG 0.526069 8.2:+34295209 MS.gene008927:CDS
CTCGCAACACTAATGTCGCT+TGG 0.531301 8.2:+34294962 MS.gene008927:CDS
AAGTATAGCAATTGGAGAAG+AGG 0.532944 8.2:+34294211 MS.gene008927:CDS
ATTGGATACTTATCGGAAGA+TGG 0.537174 8.2:-34295246 None:intergenic
AGTTTCTCTTCAACCGCACG+CGG 0.539023 8.2:-34295153 None:intergenic
TAGCCAACGAAGCTTGGATG+TGG 0.541541 8.2:+34295187 MS.gene008927:CDS
AGGAACTTGTTCTTATCCAC+CGG 0.543429 8.2:-34294389 None:intergenic
CTAGGTGAGATGTGGAATCC+AGG 0.544012 8.2:+34294347 MS.gene008927:CDS
GTCCTTGATCACCGCCTGAT+CGG 0.546209 8.2:+34294275 MS.gene008927:CDS
TCTCTTCTTCTACCACCCTC+AGG 0.551388 8.2:-34294913 None:intergenic
CTTATTGATATTCATATGGA+GGG 0.562489 8.2:+34295096 MS.gene008927:CDS
TTCTATTGCTATCCTGAGGG+TGG 0.562884 8.2:+34294901 MS.gene008927:CDS
TGTGGCTATTCCCTCATGCT+CGG 0.565069 8.2:+34295205 MS.gene008927:CDS
AGGTTTCTATTGCTATCCTG+AGG 0.566426 8.2:+34294897 MS.gene008927:intron
TCAAAATACGACCGATCAGG+CGG 0.569113 8.2:-34294286 None:intergenic
TCTTATTGATATTCATATGG+AGG 0.571805 8.2:+34295095 MS.gene008927:CDS
TAGCCACATCCAAGCTTCGT+TGG 0.575846 8.2:-34295190 None:intergenic
AGCACGTGCTCAACATCAAG+TGG 0.581807 8.2:-34294428 None:intergenic
TTTCTCTTCAACCGCACGCG+GGG 0.587741 8.2:-34295151 None:intergenic
CATTAGTGTTGCGAGCAAGA+TGG 0.591146 8.2:-34294954 None:intergenic
GTTTCTCTTCAACCGCACGC+GGG 0.593767 8.2:-34295152 None:intergenic
AAGCTTAGGCACCCCGCGTG+CGG 0.602297 8.2:+34295140 MS.gene008927:CDS
AGCATTAGCGTCCATTCTCA+GGG 0.603597 8.2:-34294240 None:intergenic
AGGTTTGGTTGTTATACCGG+TGG 0.610450 8.2:+34294373 MS.gene008927:CDS
AAGCTTCGTTGGCTAAAGCT+CGG 0.610610 8.2:-34295179 None:intergenic
GGTTTCTATTGCTATCCTGA+GGG 0.619650 8.2:+34294898 MS.gene008927:intron
TGGAGGGATACCCTTTCTCG+TGG 0.626570 8.2:+34295112 MS.gene008927:CDS
AATGCTTGGCGTCTAGACGA+AGG 0.633404 8.2:+34295330 MS.gene008927:CDS
GGGAACAGTTCCTAAAACAA+CGG 0.635137 8.2:+34294508 MS.gene008927:CDS
GATGTATGACAATGCAAGCA+TGG 0.638111 8.2:+34294466 MS.gene008927:CDS
GAGATGTGGAATCCAGGCAA+AGG 0.638218 8.2:+34294353 MS.gene008927:CDS
TCGATGCAGCGTCCACAAAG+AGG 0.643699 8.2:+34295285 MS.gene008927:CDS
AAAGAGATGTCACAGTGTCG+TGG 0.654084 8.2:+34295495 MS.gene008927:CDS
CTTGCATTGTCATACATCCA+CGG 0.654254 8.2:-34294461 None:intergenic
GTGCTAATGAGTTAACACAT+TGG 0.681981 8.2:+34295424 MS.gene008927:CDS
ACTCACGTCTAGGTGAGATG+TGG 0.712632 8.2:+34294339 MS.gene008927:CDS
GTGAGTGCAGATATTTCACA+CGG 0.722158 8.2:-34294322 None:intergenic
ACGTGCTAAATAAAGGACCG+TGG 0.743824 8.2:+34294444 MS.gene008927:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATTCTTCAAAATAATGTT+AGG - chr8.2:34295763-34295782 None:intergenic 20.0%
!! TACTAAAATTGGATACTTAT+CGG - chr8.2:34295256-34295275 None:intergenic 20.0%
!! TATACTTTCAATGTTCAAAT+TGG - chr8.2:34294198-34294217 None:intergenic 20.0%
!! TCATATTAATGCTAAAATAG+AGG + chr8.2:34294846-34294865 MS.gene008927:intron 20.0%
!!! ACTCTTCTATTTTATTTATG+TGG - chr8.2:34294708-34294727 None:intergenic 20.0%
!!! TTAATTTTGAATCTTTGAGA+AGG + chr8.2:34295541-34295560 MS.gene008927:intron 20.0%
! AGAAGATTACACAATACAAT+GGG - chr8.2:34296110-34296129 None:intergenic 25.0%
! CTTATTGATATTCATATGGA+GGG + chr8.2:34295096-34295115 MS.gene008927:CDS 25.0%
! CTTGATGCAGTATTATAATT+TGG + chr8.2:34294654-34294673 MS.gene008927:intron 25.0%
! CTTTCAAATTTGAAAATGCT+TGG + chr8.2:34295316-34295335 MS.gene008927:CDS 25.0%
! GAAGTTCTCTTTACTAAAAT+TGG - chr8.2:34295267-34295286 None:intergenic 25.0%
! GTTGCATTACATCAATTATA+GGG - chr8.2:34295812-34295831 None:intergenic 25.0%
! TACATGTATTCCAAAAATGT+TGG - chr8.2:34295962-34295981 None:intergenic 25.0%
! TAGAAGATTACACAATACAA+TGG - chr8.2:34296111-34296130 None:intergenic 25.0%
! TCAGATAAGACCAATTAATT+CGG - chr8.2:34296340-34296359 None:intergenic 25.0%
! TCTTATTGATATTCATATGG+AGG + chr8.2:34295095-34295114 MS.gene008927:CDS 25.0%
! TGTTGCATTACATCAATTAT+AGG - chr8.2:34295813-34295832 None:intergenic 25.0%
! TTGCATTACATCAATTATAG+GGG - chr8.2:34295811-34295830 None:intergenic 25.0%
!! AACATTGAAAGTATAGCAAT+TGG + chr8.2:34294203-34294222 MS.gene008927:CDS 25.0%
!!! AATTAATTGGTCTTATCTGA+AGG + chr8.2:34296340-34296359 MS.gene008927:intron 25.0%
!!! TCTATTTTATTTATGTGGAC+TGG - chr8.2:34294703-34294722 None:intergenic 25.0%
!!! TGGTCTTATTGATATTCATA+TGG + chr8.2:34295092-34295111 MS.gene008927:CDS 25.0%
AAACCACAAATAAGCCAATT+TGG - chr8.2:34295051-34295070 None:intergenic 30.0%
AAATCGAGATTGAATCTGTT+TGG - chr8.2:34295936-34295955 None:intergenic 30.0%
AATAGTTGGTTGAATCAAAC+TGG + chr8.2:34295372-34295391 MS.gene008927:CDS 30.0%
AATCATCTTGTACCAAAAGT+TGG - chr8.2:34295575-34295594 None:intergenic 30.0%
AATGTTTCTTGGTTACTAAC+AGG + chr8.2:34294877-34294896 MS.gene008927:intron 30.0%
AGGAAAACAACAATGTTTCT+TGG + chr8.2:34294866-34294885 MS.gene008927:intron 30.0%
ATCATATCCAAGATGTCTAT+TGG + chr8.2:34296464-34296483 MS.gene008927:CDS 30.0%
ATCATCTTGTACCAAAAGTT+GGG - chr8.2:34295574-34295593 None:intergenic 30.0%
ATGAAATGGTGCAAAATAGT+TGG + chr8.2:34295358-34295377 MS.gene008927:CDS 30.0%
GTAATGCAACATGTTAATAG+TGG + chr8.2:34295822-34295841 MS.gene008927:intron 30.0%
TAAAAAATCTTTGACGTCAG+AGG + chr8.2:34296435-34296454 MS.gene008927:CDS 30.0%
TAAAGAACATAGGTCAATGA+AGG + chr8.2:34296076-34296095 MS.gene008927:intron 30.0%
TCATTCCTTGAAAATGATGA+GGG + chr8.2:34295699-34295718 MS.gene008927:intron 30.0%
TTCATTCCTTGAAAATGATG+AGG + chr8.2:34295698-34295717 MS.gene008927:intron 30.0%
TTGAAAGTCTAGGAAATGAT+TGG + chr8.2:34296401-34296420 MS.gene008927:intron 30.0%
! ACCTCTAGAAATAAGGTAAA+TGG + chr8.2:34295672-34295691 MS.gene008927:intron 30.0%
! AGAAGAGTTTCGTTATCTTT+TGG + chr8.2:34294720-34294739 MS.gene008927:intron 30.0%
! AGGAAATGATTGGATTTTCA+TGG + chr8.2:34296411-34296430 MS.gene008927:intron 30.0%
! GAAGAGTTTCGTTATCTTTT+GGG + chr8.2:34294721-34294740 MS.gene008927:intron 30.0%
! TCGATTTCTACCAACATTTT+TGG + chr8.2:34295949-34295968 MS.gene008927:intron 30.0%
! TGCATCAAGAACTTTAGTTT+CGG - chr8.2:34294643-34294662 None:intergenic 30.0%
! TGGTACAAGATGATTTGTAT+TGG + chr8.2:34295580-34295599 MS.gene008927:intron 30.0%
!! ACCATTTACCTTATTTCTAG+AGG - chr8.2:34295676-34295695 None:intergenic 30.0%
AACATAGGTCAATGAAGGAT+TGG + chr8.2:34296081-34296100 MS.gene008927:intron 35.0%
AACATTGCTCTTATTCCGAA+GGG + chr8.2:34296053-34296072 MS.gene008927:intron 35.0%
AAGTATAGCAATTGGAGAAG+AGG + chr8.2:34294211-34294230 MS.gene008927:CDS 35.0%
ACGCTTATGACCGAATTAAT+TGG + chr8.2:34296327-34296346 MS.gene008927:intron 35.0%
AGACGAAGGTTTGAATGAAA+TGG + chr8.2:34295344-34295363 MS.gene008927:CDS 35.0%
AGTATAGCAATTGGAGAAGA+GGG + chr8.2:34294212-34294231 MS.gene008927:CDS 35.0%
ATCTGAAGGATGTTATGTGT+AGG + chr8.2:34296354-34296373 MS.gene008927:intron 35.0%
ATGTTAGTTGCATTCAGTGA+TGG - chr8.2:34296038-34296057 None:intergenic 35.0%
ATTGGATACTTATCGGAAGA+TGG - chr8.2:34295249-34295268 None:intergenic 35.0%
CCAAAACAAGAGGTAATGAT+CGG + chr8.2:34296276-34296295 MS.gene008927:intron 35.0%
GCTATCCAAAAAATATCACC+GGG + chr8.2:34294488-34294507 MS.gene008927:CDS 35.0%
GGAGTAAAACTCATTGCAAT+CGG + chr8.2:34295445-34295464 MS.gene008927:CDS 35.0%
GGCTATCCAAAAAATATCAC+CGG + chr8.2:34294487-34294506 MS.gene008927:CDS 35.0%
GTGCTAATGAGTTAACACAT+TGG + chr8.2:34295424-34295443 MS.gene008927:CDS 35.0%
TAACATTGCTCTTATTCCGA+AGG + chr8.2:34296052-34296071 MS.gene008927:intron 35.0%
TATGAACGACCTAGATCTAT+TGG + chr8.2:34294532-34294551 MS.gene008927:CDS 35.0%
TGAAGAATAGTTCGAAGAGA+AGG + chr8.2:34295773-34295792 MS.gene008927:intron 35.0%
TGCATGAAAACCAAAACAAG+AGG + chr8.2:34296266-34296285 MS.gene008927:intron 35.0%
TGTTAGTTGCATTCAGTGAT+GGG - chr8.2:34296037-34296056 None:intergenic 35.0%
TTTGGTCCCAGAAATTTATC+CGG - chr8.2:34295918-34295937 None:intergenic 35.0%
! ATTGGCTTATTTGTGGTTTC+CGG + chr8.2:34295052-34295071 MS.gene008927:intron 35.0%
! CAAAGGTTTGGTTGTTATAC+CGG + chr8.2:34294370-34294389 MS.gene008927:CDS 35.0%
! GAGTCATAAGTCTTGTAAGT+TGG + chr8.2:34294585-34294604 MS.gene008927:intron 35.0%
! TCTATATAAGCTAGTGTCGA+AGG + chr8.2:34296127-34296146 MS.gene008927:intron 35.0%
! TTTAGTTTCGGAACTAGCTT+AGG - chr8.2:34294631-34294650 None:intergenic 35.0%
!! TCGTTCATAACCGTTGTTTT+AGG - chr8.2:34294521-34294540 None:intergenic 35.0%
!! TGCGCTTGTTGTTATTGAAT+TGG + chr8.2:34296238-34296257 MS.gene008927:intron 35.0%
!! TTAGTGATCTAGTTTGCTCA+TGG - chr8.2:34294565-34294584 None:intergenic 35.0%
!!! TTTTTTGCTCCTGATAGAGT+AGG + chr8.2:34294754-34294773 MS.gene008927:intron 35.0%
AAAGACTTTCGACCTCTTTG+TGG - chr8.2:34295300-34295319 None:intergenic 40.0%
AAATATCTGCACTCACGTCT+AGG + chr8.2:34294329-34294348 MS.gene008927:CDS 40.0%
AGGTCTGACATGTAACTCTT+TGG + chr8.2:34296374-34296393 MS.gene008927:intron 40.0%
AGGTTTCTATTGCTATCCTG+AGG + chr8.2:34294897-34294916 MS.gene008927:intron 40.0%
ATAACAACCAAACCTTTGCC+TGG - chr8.2:34294368-34294387 None:intergenic 40.0%
CTTGCATTGTCATACATCCA+CGG - chr8.2:34294464-34294483 None:intergenic 40.0%
CTTTGGGCATTTGAAAGTCT+AGG + chr8.2:34296391-34296410 MS.gene008927:intron 40.0%
GACAAAGAGCCAAAACTCAT+TGG + chr8.2:34295604-34295623 MS.gene008927:intron 40.0%
GACCTATGTTCTTTACCCTT+CGG - chr8.2:34296071-34296090 None:intergenic 40.0%
GATGTATGACAATGCAAGCA+TGG + chr8.2:34294466-34294485 MS.gene008927:CDS 40.0%
GCGCATTGTCAAGAATTGAT+CGG - chr8.2:34296223-34296242 None:intergenic 40.0%
GGAATTGCACCAATAGATCT+AGG - chr8.2:34294544-34294563 None:intergenic 40.0%
GGGAACAGTTCCTAAAACAA+CGG + chr8.2:34294508-34294527 MS.gene008927:CDS 40.0%
GGTCTGACATGTAACTCTTT+GGG + chr8.2:34296375-34296394 MS.gene008927:intron 40.0%
GGTTTCTATTGCTATCCTGA+GGG + chr8.2:34294898-34294917 MS.gene008927:intron 40.0%
GTGAGTGCAGATATTTCACA+CGG - chr8.2:34294325-34294344 None:intergenic 40.0%
GTTAGTTGCATTCAGTGATG+GGG - chr8.2:34296036-34296055 None:intergenic 40.0%
GTTGAGCACGTGCTAAATAA+AGG + chr8.2:34294437-34294456 MS.gene008927:CDS 40.0%
TATACCATGAACGTCGTCAA+TGG + chr8.2:34295991-34296010 MS.gene008927:intron 40.0%
TGTCGAAGGTTCTTACAAAC+AGG + chr8.2:34296141-34296160 MS.gene008927:intron 40.0%
TTAGTTGCATTCAGTGATGG+GGG - chr8.2:34296035-34296054 None:intergenic 40.0%
TTCCGAAGGGTAAAGAACAT+AGG + chr8.2:34296066-34296085 MS.gene008927:intron 40.0%
TTCCTGCATCATCAGTTACA+CGG - chr8.2:34295728-34295747 None:intergenic 40.0%
TTGCAGCCGGATAAATTTCT+GGG + chr8.2:34295909-34295928 MS.gene008927:intron 40.0%
TTGCATGCACAAGAGAAGAA+AGG + chr8.2:34295012-34295031 MS.gene008927:intron 40.0%
TTTGCAGCCGGATAAATTTC+TGG + chr8.2:34295908-34295927 MS.gene008927:intron 40.0%
! AGGAACTTGTTCTTATCCAC+CGG - chr8.2:34294392-34294411 None:intergenic 40.0%
! AGGCCAAATTGGCTTATTTG+TGG + chr8.2:34295045-34295064 MS.gene008927:intron 40.0%
! ATATTTTCCAACCGAGCATG+AGG - chr8.2:34295219-34295238 None:intergenic 40.0%
! CTTGTAAGTTGGAACTGCTA+AGG + chr8.2:34294596-34294615 MS.gene008927:intron 40.0%
! GAACAAGTTCCTTTTCCAGT+TGG + chr8.2:34294400-34294419 MS.gene008927:CDS 40.0%
! GGATTCCCTCATCATTTTCA+AGG - chr8.2:34295707-34295726 None:intergenic 40.0%
! TAACTGATGATGCAGGAATG+AGG + chr8.2:34295730-34295749 MS.gene008927:intron 40.0%
! TATTTTCCAACCGAGCATGA+GGG - chr8.2:34295218-34295237 None:intergenic 40.0%
! TGCATCGACCTCTAGAAATA+AGG + chr8.2:34295665-34295684 MS.gene008927:intron 40.0%
!! ACAACTCACTGCTACTTTAC+AGG + chr8.2:34295857-34295876 MS.gene008927:intron 40.0%
!! CCGATCATTACCTCTTGTTT+TGG - chr8.2:34296279-34296298 None:intergenic 40.0%
!!! CTGTTCCCGGTGATATTTTT+TGG - chr8.2:34294496-34294515 None:intergenic 40.0%
!!! GTTGTTTTAGGAACTGTTCC+CGG - chr8.2:34294509-34294528 None:intergenic 40.0%
AAAACTCATTGGTACCGCGA+AGG + chr8.2:34295615-34295634 MS.gene008927:intron 45.0%
AAAGAGATGTCACAGTGTCG+TGG + chr8.2:34295495-34295514 MS.gene008927:CDS 45.0%
AAGCATTAGCGTCCATTCTC+AGG - chr8.2:34294244-34294263 None:intergenic 45.0%
ACGTGCTAAATAAAGGACCG+TGG + chr8.2:34294444-34294463 MS.gene008927:CDS 45.0%
AGAAGAAAGGTTGTGCGAAG+AGG + chr8.2:34295025-34295044 MS.gene008927:intron 45.0%
AGCATTAGCGTCCATTCTCA+GGG - chr8.2:34294243-34294262 None:intergenic 45.0%
ATCTTTGACGTCAGAGGTTG+TGG + chr8.2:34296441-34296460 MS.gene008927:CDS 45.0%
CAGTCAAAATACGACCGATC+AGG - chr8.2:34294292-34294311 None:intergenic 45.0%
CATTAGTGTTGCGAGCAAGA+TGG - chr8.2:34294957-34294976 None:intergenic 45.0%
TCAAAATACGACCGATCAGG+CGG - chr8.2:34294289-34294308 None:intergenic 45.0%
TGCAATGTTCTCTTTGCAGC+CGG + chr8.2:34295896-34295915 MS.gene008927:intron 45.0%
TGTCAAGAATTGATCGGCCT+GGG - chr8.2:34296217-34296236 None:intergenic 45.0%
TTCTATTGCTATCCTGAGGG+TGG + chr8.2:34294901-34294920 MS.gene008927:CDS 45.0%
TTCTCGTGGCTCAAAAGCTT+AGG + chr8.2:34295126-34295145 MS.gene008927:CDS 45.0%
TTGTCAAGAATTGATCGGCC+TGG - chr8.2:34296218-34296237 None:intergenic 45.0%
! AAGCTTCGTTGGCTAAAGCT+CGG - chr8.2:34295182-34295201 None:intergenic 45.0%
! AAGCTTTTGAGCCACGAGAA+AGG - chr8.2:34295126-34295145 None:intergenic 45.0%
! ACTCAATCTCCTTTTGTCCC+AGG + chr8.2:34296197-34296216 MS.gene008927:intron 45.0%
! AGCTTTTGAGCCACGAGAAA+GGG - chr8.2:34295125-34295144 None:intergenic 45.0%
! AGGTTTGGTTGTTATACCGG+TGG + chr8.2:34294373-34294392 MS.gene008927:CDS 45.0%
! ATCCGTGTAACTGATGATGC+AGG + chr8.2:34295723-34295742 MS.gene008927:intron 45.0%
! TTCGCGGTACCAATGAGTTT+TGG - chr8.2:34295616-34295635 None:intergenic 45.0%
AAGTTGGAACTGCTAAGGCC+TGG + chr8.2:34294601-34294620 MS.gene008927:intron 50.0%
AATGCTTGGCGTCTAGACGA+AGG + chr8.2:34295330-34295349 MS.gene008927:CDS 50.0%
ACTCACGTCTAGGTGAGATG+TGG + chr8.2:34294339-34294358 MS.gene008927:CDS 50.0%
AGCACGTGCTCAACATCAAG+TGG - chr8.2:34294431-34294450 None:intergenic 50.0%
AGTTGGAACTGCTAAGGCCT+GGG + chr8.2:34294602-34294621 MS.gene008927:intron 50.0%
AGTTTCTCTTCAACCGCACG+CGG - chr8.2:34295156-34295175 None:intergenic 50.0%
ATTGATCGGCCTGGGACAAA+AGG - chr8.2:34296209-34296228 None:intergenic 50.0%
CAGCATCTTTGACAGCTTGC+CGG - chr8.2:34295074-34295093 None:intergenic 50.0%
CATCAAGTGGATGAGCCAAC+TGG - chr8.2:34294418-34294437 None:intergenic 50.0%
CCACCTCTTCCTACTCTATC+AGG - chr8.2:34294766-34294785 None:intergenic 50.0%
CCTGATAGAGTAGGAAGAGG+TGG + chr8.2:34294763-34294782 MS.gene008927:intron 50.0%
CGCTAATGCTTCTGACATGC+AGG + chr8.2:34294253-34294272 MS.gene008927:CDS 50.0%
CGTCGTCAATGGCTGAATGA+AGG + chr8.2:34296002-34296021 MS.gene008927:intron 50.0%
CTAGGTGAGATGTGGAATCC+AGG + chr8.2:34294347-34294366 MS.gene008927:CDS 50.0%
CTCGCAACACTAATGTCGCT+TGG + chr8.2:34294962-34294981 MS.gene008927:CDS 50.0%
GAGATGTGGAATCCAGGCAA+AGG + chr8.2:34294353-34294372 MS.gene008927:CDS 50.0%
GATAGAGTAGGAAGAGGTGG+TGG + chr8.2:34294766-34294785 MS.gene008927:intron 50.0%
GCTCCTGATAGAGTAGGAAG+AGG + chr8.2:34294760-34294779 MS.gene008927:intron 50.0%
GTGGAATCCAGGCAAAGGTT+TGG + chr8.2:34294358-34294377 MS.gene008927:CDS 50.0%
GTGGATGAGCCAACTGGAAA+AGG - chr8.2:34294412-34294431 None:intergenic 50.0%
GTTGTGCGAAGAGGCCAAAT+TGG + chr8.2:34295034-34295053 MS.gene008927:intron 50.0%
TAGCCAACGAAGCTTGGATG+TGG + chr8.2:34295187-34295206 MS.gene008927:CDS 50.0%
TAGCCACATCCAAGCTTCGT+TGG - chr8.2:34295193-34295212 None:intergenic 50.0%
TAGTGTCAACGTCTCCTTCG+CGG - chr8.2:34295632-34295651 None:intergenic 50.0%
TCAGCCATTGACGACGTTCA+TGG - chr8.2:34295998-34296017 None:intergenic 50.0%
TCTCTTCTTCTACCACCCTC+AGG - chr8.2:34294916-34294935 None:intergenic 50.0%
TGTGGCTATTCCCTCATGCT+CGG + chr8.2:34295205-34295224 MS.gene008927:CDS 50.0%
! AAGGCGAACGACCCAACTTT+TGG + chr8.2:34295560-34295579 MS.gene008927:intron 50.0%
! AGAGGGTATGACCCTGAGAA+TGG + chr8.2:34294229-34294248 MS.gene008927:CDS 50.0%
! CACAGTGTCGTGGTAATGCT+CGG + chr8.2:34295505-34295524 MS.gene008927:intron 50.0%
! GAGCTTTAGCCAACGAAGCT+TGG + chr8.2:34295181-34295200 MS.gene008927:CDS 50.0%
! GGAACTAGCTTAGGTTTCCC+AGG - chr8.2:34294622-34294641 None:intergenic 50.0%
!! TGTGGACTGGTGTCTCACTA+AGG - chr8.2:34294690-34294709 None:intergenic 50.0%
CGGCAAGCTGTCAAAGATGC+TGG + chr8.2:34295072-34295091 MS.gene008927:intron 55.0%
GCTATTCCCTCATGCTCGGT+TGG + chr8.2:34295209-34295228 MS.gene008927:CDS 55.0%
GTCCTTGATCACCGCCTGAT+CGG + chr8.2:34294275-34294294 MS.gene008927:CDS 55.0%
GTTTCTCTTCAACCGCACGC+GGG - chr8.2:34295155-34295174 None:intergenic 55.0%
TCGATGCAGCGTCCACAAAG+AGG + chr8.2:34295285-34295304 MS.gene008927:CDS 55.0%
TGGAGGGATACCCTTTCTCG+TGG + chr8.2:34295112-34295131 MS.gene008927:CDS 55.0%
TTTCTCTTCAACCGCACGCG+GGG - chr8.2:34295154-34295173 None:intergenic 55.0%
! GTGTCGTGGTAATGCTCGGA+TGG + chr8.2:34295509-34295528 MS.gene008927:intron 55.0%
GACCGATCAGGCGGTGATCA+AGG - chr8.2:34294280-34294299 None:intergenic 60.0%
AAGCTTAGGCACCCCGCGTG+CGG + chr8.2:34295140-34295159 MS.gene008927:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 34294188 34296489 34294188 ID=MS.gene008927
chr8.2 mRNA 34294188 34296489 34294188 ID=MS.gene008927.t1;Parent=MS.gene008927
chr8.2 exon 34294188 34294598 34294188 ID=MS.gene008927.t1.exon1;Parent=MS.gene008927.t1
chr8.2 CDS 34294188 34294598 34294188 ID=cds.MS.gene008927.t1;Parent=MS.gene008927.t1
chr8.2 exon 34294899 34294983 34294899 ID=MS.gene008927.t1.exon2;Parent=MS.gene008927.t1
chr8.2 CDS 34294899 34294983 34294899 ID=cds.MS.gene008927.t1;Parent=MS.gene008927.t1
chr8.2 exon 34295079 34295516 34295079 ID=MS.gene008927.t1.exon3;Parent=MS.gene008927.t1
chr8.2 CDS 34295079 34295516 34295079 ID=cds.MS.gene008927.t1;Parent=MS.gene008927.t1
chr8.2 exon 34296413 34296489 34296413 ID=MS.gene008927.t1.exon4;Parent=MS.gene008927.t1
chr8.2 CDS 34296413 34296489 34296413 ID=cds.MS.gene008927.t1;Parent=MS.gene008927.t1
Gene Sequence

>MS.gene008927

ATGGCAGCCAATTTGAACATTGAAAGTATAGCAATTGGAGAAGAGGGTATGACCCTGAGAATGGACGCTAATGCTTCTGACATGCAGGTCCTTGATCACCGCCTGATCGGTCGTATTTTGACTGACAAACAGATCCGTGTGAAATATCTGCACTCACGTCTAGGTGAGATGTGGAATCCAGGCAAAGGTTTGGTTGTTATACCGGTGGATAAGAACAAGTTCCTTTTCCAGTTGGCTCATCCACTTGATGTTGAGCACGTGCTAAATAAAGGACCGTGGATGTATGACAATGCAAGCATGGCTATCCAAAAAATATCACCGGGAACAGTTCCTAAAACAACGGTTATGAACGACCTAGATCTATTGGTGCAATTCCATGAGCAAACTAGATCACTAAGAGTCATAAGTCTTGTAAGTTGGAACTGCTAAGGCCTGGGAAACCTAAGCTAGTTCCGAAACTAAAGTTCTTGATGCAGTATTATAATTTGGATGCTATTTTCCTTAGTGAGACACCAGTCCACATAAATAAAATAGAAGAGTTTCGTTATCTTTTGGGTTATGATTATTTTTTTGCTCCTGATAGAGTAGGAAGAGGTGGTGGTATTGTGTTATTTTGTCACAAATCACTCAACTGTACTATTGTAAATTATTCATCAAATCATATTAATGCTAAAATAGAGGAAAACAACAATGTTTCTTGGTTACTAACAGGTTTCTATTGCTATCCTGAGGGTGGTAGAAGAAGAGATTCTTGAAATTTTCTTCGCCATCTTGCTCGCAACACTAATGTCGCTTGGTGAATATTCAAAGATTTTAATGACATATTGCATGCACAAGAGAAGAAAGGTTGTGCGAAGAGGCCAAATTGGCTTATTTGTGGTTTCCGGCAAGCTGTCAAAGATGCTGGTCTTATTGATATTCATATGGAGGGATACCCTTTCTCGTGGCTCAAAAGCTTAGGCACCCCGCGTGCGGTTGAAGAGAAACTTGACCGAGCTTTAGCCAACGAAGCTTGGATGTGGCTATTCCCTCATGCTCGGTTGGAAAATATAATAGCACCATCTTCCGATAAGTATCCAATTTTAGTAAAGAGAACTTCGATGCAGCGTCCACAAAGAGGTCGAAAGTCTTTCAAATTTGAAAATGCTTGGCGTCTAGACGAAGGTTTGAATGAAATGGTGCAAAATAGTTGGTTGAATCAAACTGGTAATAATGTTATCTCAAAATTGAACGCGTGTGCTAATGAGTTAACACATTGGAGTAAAACTCATTGCAATCGGTTGCGAGTTGATATAGAAGAATGCAAGAAAGAGATGTCACAGTGTCGTGGTAATGCTCGGATGGAAAATGAATTTAATTTTGAATCTTTGAGAAGGCGAACGACCCAACTTTTGGTACAAGATGATTTGTATTGGTGACAAAGAGCCAAAACTCATTGGTACCGCGAAGGAGACGTTGACACTAAATTCTCTCATGCTGCATCGACCTCTAGAAATAAGGTAAATGGTATTTCATTCCTTGAAAATGATGAGGGAATCCGTGTAACTGATGATGCAGGAATGAGGAATATAGCCTAACATTATTTTGAAGAATAGTTCGAAGAGAAGGCTAGTACAAGAGCCCCTATAATTGATGTAATGCAACATGTTAATAGTGGTGAAGATAATGCACAACTCACTGCTACTTTACAGGTTGAAGAGTTCAACGATGCAATGTTCTCTTTGCAGCCGGATAAATTTCTGGGACCAAACAGATTCAATCTCGATTTCTACCAACATTTTTGGAATACATGTAGCGCGAATATATACCATGAACGTCGTCAATGGCTGAATGAAGGTCAATTTCCCCCATCACTGAATGCAACTAACATTGCTCTTATTCCGAAGGGTAAAGAACATAGGTCAATGAAGGATTGGAGACCCATTGTATTGTGTAATCTTCTATATAAGCTAGTGTCGAAGGTTCTTACAAACAGGTTAAAGAAAATTCTCTACAAATGTATAGCGAAAACTCAATCTCCTTTTGTCCCAGGCCGATCAATTCTTGACAATGCGCTTGTTGTTATTGAATTGGTTCATTGCATGAAAACCAAAACAAGAGGTAATGATCGGAGTGCAACGTTAAAATTAGACATTAGCAACGCTTATGACCGAATTAATTGGTCTTATCTGAAGGATGTTATGTGTAGGTCTGACATGTAACTCTTTGGGCATTTGAAAGTCTAGGAAATGATTGGATTTTCATGGATAAAAAATCTTTGACGTCAGAGGTTGTGGATCATATCCAAGATGTCTATTGGTAA
Protein sequence

>MS.gene008927.t1

MAANLNIESIAIGEEGMTLRMDANASDMQVLDHRLIGRILTDKQIRVKYLHSRLGEMWNPGKGLVVIPVDKNKFLFQLAHPLDVEHVLNKGPWMYDNASMAIQKISPGTVPKTTVMNDLDLLVQFHEQTRSLRVISLVSIAILRVVEEEILEIFFAILLATLMSLAVKDAGLIDIHMEGYPFSWLKSLGTPRAVEEKLDRALANEAWMWLFPHARLENIIAPSSDKYPILVKRTSMQRPQRGRKSFKFENAWRLDEGLNEMVQNSWLNQTGNNVISKLNACANELTHWSKTHCNRLRVDIEECKKEMSQCRGNDWIFMDKKSLTSEVVDHIQDVYW