Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027169.t1 | AES70414.1 | 42.4 | 283 | 76 | 7 | 6 | 204 | 1 | 280 | 3.60E-38 | 168.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027169.t1 | G7J017 | 42.4 | 283 | 76 | 7 | 6 | 204 | 1 | 280 | 2.6e-38 | 168.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027169.t1 | MTR_3g053920 | 41.259 | 286 | 75 | 9 | 6 | 204 | 1 | 280 | 9.70e-50 | 165 |
| MS.gene027169.t1 | MTR_8g463110 | 58.475 | 118 | 33 | 1 | 163 | 264 | 1 | 118 | 3.01e-32 | 125 |
| MS.gene027169.t1 | MTR_2g061500 | 63.158 | 95 | 16 | 1 | 6 | 81 | 1 | 95 | 4.32e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCTCTGATATGCGTATT+AGG | 0.189583 | 3.4:+47300201 | MS.gene027169:CDS |
| TTATAGAAGTTATCTGATTC+TGG | 0.245558 | 3.4:-47300556 | None:intergenic |
| AGGTCAGACCATCAAGTTTA+AGG | 0.286706 | 3.4:-47299740 | None:intergenic |
| CCAAATGTAGGTCAGGGTAT+AGG | 0.292773 | 3.4:+47300131 | MS.gene027169:intron |
| CATGTTGCCTAACCGTTCTT+TGG | 0.297181 | 3.4:+47300694 | MS.gene027169:CDS |
| CATCAACTTTATGGTGAAAC+TGG | 0.325140 | 3.4:-47299956 | None:intergenic |
| AGACATACACTCGCTGAAAT+AGG | 0.331492 | 3.4:-47299871 | None:intergenic |
| CAAATGTAGGTCAGGGTATA+GGG | 0.351052 | 3.4:+47300132 | MS.gene027169:intron |
| CCTTCCAGCCTTAAACTTGA+TGG | 0.352926 | 3.4:+47299732 | MS.gene027169:CDS |
| AGTCTAATTCGAACAGCTTC+GGG | 0.360275 | 3.4:-47300325 | None:intergenic |
| TGCGTGCAGCATCAACTTTA+TGG | 0.364922 | 3.4:-47299965 | None:intergenic |
| TAGCTCTGATATGCGTATTA+GGG | 0.372451 | 3.4:+47300202 | MS.gene027169:CDS |
| CCTAACCGTTCTTTGGTGTT+GGG | 0.389310 | 3.4:+47300701 | MS.gene027169:CDS |
| CATTTGTTGCTGATGGGGAT+GGG | 0.403422 | 3.4:+47300837 | MS.gene027169:CDS |
| GCCTAACCGTTCTTTGGTGT+TGG | 0.407061 | 3.4:+47300700 | MS.gene027169:CDS |
| GAGTCTAATTCGAACAGCTT+CGG | 0.410626 | 3.4:-47300326 | None:intergenic |
| CAGAGCTATGAATTGAGTTT+CGG | 0.412762 | 3.4:-47300187 | None:intergenic |
| ATCCTTGAACATTGTCTGAT+TGG | 0.418134 | 3.4:+47299816 | MS.gene027169:CDS |
| ATTTGTTGCTGATGGGGATG+GGG | 0.418685 | 3.4:+47300838 | MS.gene027169:CDS |
| TCATTTGTTGCTGATGGGGA+TGG | 0.435173 | 3.4:+47300836 | MS.gene027169:CDS |
| ACTCGCTGAAATAGGCAAAC+TGG | 0.440606 | 3.4:-47299863 | None:intergenic |
| GTTGACAGGTGTCGTTTGAT+TGG | 0.446964 | 3.4:+47300284 | MS.gene027169:CDS |
| CTCTATGCCAGTCTATCTCA+TGG | 0.454450 | 3.4:+47299707 | None:intergenic |
| GAGTTACTTAGGCATATTCA+AGG | 0.465722 | 3.4:+47300154 | MS.gene027169:CDS |
| TAACATCATTTGTTGCTGAT+GGG | 0.479391 | 3.4:+47300831 | MS.gene027169:CDS |
| GCAGTTTGAAAAGGAGCAGC+AGG | 0.484033 | 3.4:-47300728 | None:intergenic |
| ATGTTATTTCACCATTCTGA+AGG | 0.487463 | 3.4:-47300814 | None:intergenic |
| CTTTATGGTGAAACTGGAAA+AGG | 0.493974 | 3.4:-47299950 | None:intergenic |
| ATAACATCATTTGTTGCTGA+TGG | 0.519477 | 3.4:+47300830 | MS.gene027169:CDS |
| TCATTGCTAGCAGTTTGAAA+AGG | 0.519623 | 3.4:-47300737 | None:intergenic |
| TAGGAACAAATGTTAGTCAT+GGG | 0.521867 | 3.4:+47300873 | MS.gene027169:CDS |
| GAAGGATCCATGAGATAGAC+TGG | 0.525643 | 3.4:-47299714 | None:intergenic |
| CAGACCATCAAGTTTAAGGC+TGG | 0.533456 | 3.4:-47299736 | None:intergenic |
| CTATCATTGAAACTCGGTAC+AGG | 0.537871 | 3.4:-47300521 | None:intergenic |
| ATAGGAACAAATGTTAGTCA+TGG | 0.541273 | 3.4:+47300872 | MS.gene027169:CDS |
| GGCCAATCAGACAATGTTCA+AGG | 0.541344 | 3.4:-47299818 | None:intergenic |
| TTCCTCTTCCACAGGTACCT+CGG | 0.548940 | 3.4:+47300664 | MS.gene027169:intron |
| TTTGTTGCTGATGGGGATGG+GGG | 0.556510 | 3.4:+47300839 | MS.gene027169:CDS |
| GTGCTACTAATGCTGTTGAC+AGG | 0.562855 | 3.4:+47300270 | MS.gene027169:CDS |
| CAGGGTATAGGGAGTTACTT+AGG | 0.563489 | 3.4:+47300143 | MS.gene027169:CDS |
| TGGTCTGACCTTCTCTGAAG+AGG | 0.563588 | 3.4:+47299752 | MS.gene027169:CDS |
| AACATCATTTGTTGCTGATG+GGG | 0.566396 | 3.4:+47300832 | MS.gene027169:CDS |
| GCTAAAGCAAAACATAATGC+AGG | 0.568748 | 3.4:+47300608 | MS.gene027169:CDS |
| TTTCATGATCAGCAAGAACT+CGG | 0.574740 | 3.4:-47299839 | None:intergenic |
| TGTTAAATCCTCTTCAGAGA+AGG | 0.576569 | 3.4:-47299760 | None:intergenic |
| CCATCAAGTTTAAGGCTGGA+AGG | 0.580772 | 3.4:-47299732 | None:intergenic |
| AGGCAACATGTTTGAAGCCG+AGG | 0.585293 | 3.4:-47300681 | None:intergenic |
| GGTGAAACTGGAAAAGGTAA+CGG | 0.591613 | 3.4:-47299944 | None:intergenic |
| AGGATGTTGGCCCTTCAGAA+TGG | 0.594097 | 3.4:+47300803 | MS.gene027169:CDS |
| TGTTATTTCACCATTCTGAA+GGG | 0.597418 | 3.4:-47300813 | None:intergenic |
| GCTGCACGCATTCTTGATGA+AGG | 0.604903 | 3.4:+47299978 | MS.gene027169:CDS |
| ATTGAAACTCGGTACAGGCA+TGG | 0.612239 | 3.4:-47300516 | None:intergenic |
| AATCAGACAATGTTCAAGGA+TGG | 0.617382 | 3.4:-47299814 | None:intergenic |
| AGGAACAAATGTTAGTCATG+GGG | 0.621613 | 3.4:+47300874 | MS.gene027169:CDS |
| TTTCAATGATAGAATGCTTG+CGG | 0.622741 | 3.4:+47300532 | MS.gene027169:CDS |
| TGTCAACAGCATTAGTAGCA+CGG | 0.652957 | 3.4:-47300268 | None:intergenic |
| GGAACAAATGTTAGTCATGG+GGG | 0.654294 | 3.4:+47300875 | MS.gene027169:CDS |
| CAGACAATGTTCAAGGATGG+CGG | 0.662160 | 3.4:-47299811 | None:intergenic |
| GAGGAGTCTCAAGATGACAC+TGG | 0.664937 | 3.4:+47300758 | MS.gene027169:CDS |
| CCCAACACCAAAGAACGGTT+AGG | 0.666788 | 3.4:-47300701 | None:intergenic |
| GAAGTCCCAACACCAAAGAA+CGG | 0.673269 | 3.4:-47300706 | None:intergenic |
| AGCATTCTATCATTGAAACT+CGG | 0.674427 | 3.4:-47300527 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAAATCAATATGGTTCAGA+GGG | - | chr3.4:47300073-47300092 | None:intergenic | 25.0% |
| ! | CTTGAACTCAAAAATCAATA+TGG | - | chr3.4:47300082-47300101 | None:intergenic | 25.0% |
| ! | TTATAGAAGTTATCTGATTC+TGG | - | chr3.4:47300559-47300578 | None:intergenic | 25.0% |
| AGCATTCTATCATTGAAACT+CGG | - | chr3.4:47300530-47300549 | None:intergenic | 30.0% | |
| AGGTGAAAATTTCTCTTGAT+AGG | + | chr3.4:47300628-47300647 | MS.gene027169:intron | 30.0% | |
| ATAGGAACAAATGTTAGTCA+TGG | + | chr3.4:47300872-47300891 | MS.gene027169:CDS | 30.0% | |
| CAAAAATCAATATGGTTCAG+AGG | - | chr3.4:47300074-47300093 | None:intergenic | 30.0% | |
| GAAAAAAAGAAAGAGGATGT+TGG | + | chr3.4:47300790-47300809 | MS.gene027169:CDS | 30.0% | |
| TAGGAACAAATGTTAGTCAT+GGG | + | chr3.4:47300873-47300892 | MS.gene027169:CDS | 30.0% | |
| TGATAATTTCCATGTTGCTA+TGG | + | chr3.4:47300013-47300032 | MS.gene027169:intron | 30.0% | |
| TGGAAATTATCATACATCCA+CGG | - | chr3.4:47300005-47300024 | None:intergenic | 30.0% | |
| TTTCAATGATAGAATGCTTG+CGG | + | chr3.4:47300532-47300551 | MS.gene027169:CDS | 30.0% | |
| ! | ATAACATCATTTGTTGCTGA+TGG | + | chr3.4:47300830-47300849 | MS.gene027169:CDS | 30.0% |
| ! | TAACATCATTTGTTGCTGAT+GGG | + | chr3.4:47300831-47300850 | MS.gene027169:CDS | 30.0% |
| !! | ATGTTATTTCACCATTCTGA+AGG | - | chr3.4:47300817-47300836 | None:intergenic | 30.0% |
| !! | TGTTATTTCACCATTCTGAA+GGG | - | chr3.4:47300816-47300835 | None:intergenic | 30.0% |
| !!! | CCTCTTTCTTTTTTTCAGTT+CGG | - | chr3.4:47300786-47300805 | None:intergenic | 30.0% |
| !!! | GATTTTTGAGTTCAAGTTCA+TGG | + | chr3.4:47300086-47300105 | MS.gene027169:intron | 30.0% |
| AATCAGACAATGTTCAAGGA+TGG | - | chr3.4:47299817-47299836 | None:intergenic | 35.0% | |
| ACTCGTAATTCCACAACTAA+AGG | + | chr3.4:47300491-47300510 | MS.gene027169:intron | 35.0% | |
| AGGAACAAATGTTAGTCATG+GGG | + | chr3.4:47300874-47300893 | MS.gene027169:CDS | 35.0% | |
| ATCCTTGAACATTGTCTGAT+TGG | + | chr3.4:47299816-47299835 | MS.gene027169:CDS | 35.0% | |
| ATTCAACCAAATGTAGGTCA+GGG | + | chr3.4:47300125-47300144 | MS.gene027169:intron | 35.0% | |
| CAGAGCTATGAATTGAGTTT+CGG | - | chr3.4:47300190-47300209 | None:intergenic | 35.0% | |
| CATCAACTTTATGGTGAAAC+TGG | - | chr3.4:47299959-47299978 | None:intergenic | 35.0% | |
| CCGAACTGAAAAAAAGAAAG+AGG | + | chr3.4:47300783-47300802 | MS.gene027169:CDS | 35.0% | |
| CTTTATGGTGAAACTGGAAA+AGG | - | chr3.4:47299953-47299972 | None:intergenic | 35.0% | |
| GAGTTACTTAGGCATATTCA+AGG | + | chr3.4:47300154-47300173 | MS.gene027169:CDS | 35.0% | |
| GATGGGGGAAATAATGTAAT+AGG | + | chr3.4:47300854-47300873 | MS.gene027169:CDS | 35.0% | |
| GCTAAAGCAAAACATAATGC+AGG | + | chr3.4:47300608-47300627 | MS.gene027169:CDS | 35.0% | |
| GGTTTCATTCAACCAAATGT+AGG | + | chr3.4:47300119-47300138 | MS.gene027169:intron | 35.0% | |
| TAATGAGATCCTGAAGCTAA+TGG | - | chr3.4:47300424-47300443 | None:intergenic | 35.0% | |
| TCATTGCTAGCAGTTTGAAA+AGG | - | chr3.4:47300740-47300759 | None:intergenic | 35.0% | |
| TGTTAAATCCTCTTCAGAGA+AGG | - | chr3.4:47299763-47299782 | None:intergenic | 35.0% | |
| TTTCATGATCAGCAAGAACT+CGG | - | chr3.4:47299842-47299861 | None:intergenic | 35.0% | |
| TTTGGTTGAATGAAACCGAA+TGG | - | chr3.4:47300116-47300135 | None:intergenic | 35.0% | |
| ! | AACATCATTTGTTGCTGATG+GGG | + | chr3.4:47300832-47300851 | MS.gene027169:CDS | 35.0% |
| ! | TTTTCAAACTGCTAGCAATG+AGG | + | chr3.4:47300739-47300758 | MS.gene027169:CDS | 35.0% |
| ! | TTTTGCTTTAGCTGCGTTTT+GGG | - | chr3.4:47300600-47300619 | None:intergenic | 35.0% |
| !! | ATAGCTCTGATATGCGTATT+AGG | + | chr3.4:47300201-47300220 | MS.gene027169:CDS | 35.0% |
| !! | TAGCTCTGATATGCGTATTA+GGG | + | chr3.4:47300202-47300221 | MS.gene027169:CDS | 35.0% |
| ACGAAACTAAGAATGACACC+GGG | - | chr3.4:47300050-47300069 | None:intergenic | 40.0% | |
| AGACATACACTCGCTGAAAT+AGG | - | chr3.4:47299874-47299893 | None:intergenic | 40.0% | |
| AGGTCAGACCATCAAGTTTA+AGG | - | chr3.4:47299743-47299762 | None:intergenic | 40.0% | |
| AGTCTAATTCGAACAGCTTC+GGG | - | chr3.4:47300328-47300347 | None:intergenic | 40.0% | |
| CAAATGTAGGTCAGGGTATA+GGG | + | chr3.4:47300132-47300151 | MS.gene027169:intron | 40.0% | |
| CAAGTTCATGGTCTTCCATT+CGG | + | chr3.4:47300098-47300117 | MS.gene027169:intron | 40.0% | |
| CACCAAAATCATGTTGTTGG+TGG | + | chr3.4:47300458-47300477 | MS.gene027169:intron | 40.0% | |
| CATTCAACCAAATGTAGGTC+AGG | + | chr3.4:47300124-47300143 | MS.gene027169:intron | 40.0% | |
| CTATCATTGAAACTCGGTAC+AGG | - | chr3.4:47300524-47300543 | None:intergenic | 40.0% | |
| GACGAAACTAAGAATGACAC+CGG | - | chr3.4:47300051-47300070 | None:intergenic | 40.0% | |
| GAGTCTAATTCGAACAGCTT+CGG | - | chr3.4:47300329-47300348 | None:intergenic | 40.0% | |
| GGAACAAATGTTAGTCATGG+GGG | + | chr3.4:47300875-47300894 | MS.gene027169:CDS | 40.0% | |
| GGTGAAACTGGAAAAGGTAA+CGG | - | chr3.4:47299947-47299966 | None:intergenic | 40.0% | |
| GGTTACAATTACCAAATCGG+TGG | + | chr3.4:47299917-47299936 | MS.gene027169:intron | 40.0% | |
| TCGCACCAAAATCATGTTGT+TGG | + | chr3.4:47300455-47300474 | MS.gene027169:intron | 40.0% | |
| TGATGACAGTGTTCGTAACT+GGG | + | chr3.4:47300349-47300368 | MS.gene027169:intron | 40.0% | |
| TGTCAACAGCATTAGTAGCA+CGG | - | chr3.4:47300271-47300290 | None:intergenic | 40.0% | |
| TTGTTGCGCTAGAAAAAGAG+TGG | + | chr3.4:47300240-47300259 | MS.gene027169:CDS | 40.0% | |
| ! | AGCCACCAACAACATGATTT+TGG | - | chr3.4:47300463-47300482 | None:intergenic | 40.0% |
| ! | CATTTTCATGTTCGGACTCA+AGG | - | chr3.4:47299791-47299810 | None:intergenic | 40.0% |
| ! | GCGGGTTACAATTACCAAAT+CGG | + | chr3.4:47299914-47299933 | MS.gene027169:intron | 40.0% |
| ! | GTTTTGCTTTAGCTGCGTTT+TGG | - | chr3.4:47300601-47300620 | None:intergenic | 40.0% |
| ! | TGCAACAAACCATTAGCTTC+AGG | + | chr3.4:47300412-47300431 | MS.gene027169:intron | 40.0% |
| AAACCAGCCTCACAAAGGAT+AGG | + | chr3.4:47300383-47300402 | MS.gene027169:intron | 45.0% | |
| ACTCGCTGAAATAGGCAAAC+TGG | - | chr3.4:47299866-47299885 | None:intergenic | 45.0% | |
| ACTTGAAACCAGCCTCACAA+AGG | + | chr3.4:47300378-47300397 | MS.gene027169:intron | 45.0% | |
| AGGCATGGTTCCTTTAGTTG+TGG | - | chr3.4:47300504-47300523 | None:intergenic | 45.0% | |
| ATGTCTTGTGCATAGAAGCC+AGG | + | chr3.4:47299888-47299907 | MS.gene027169:intron | 45.0% | |
| ATTGAAACTCGGTACAGGCA+TGG | - | chr3.4:47300519-47300538 | None:intergenic | 45.0% | |
| CAGACAATGTTCAAGGATGG+CGG | - | chr3.4:47299814-47299833 | None:intergenic | 45.0% | |
| CAGGGTATAGGGAGTTACTT+AGG | + | chr3.4:47300143-47300162 | MS.gene027169:CDS | 45.0% | |
| CATGTTGCCTAACCGTTCTT+TGG | + | chr3.4:47300694-47300713 | MS.gene027169:CDS | 45.0% | |
| CCAAATGTAGGTCAGGGTAT+AGG | + | chr3.4:47300131-47300150 | MS.gene027169:intron | 45.0% | |
| CCTATACCCTGACCTACATT+TGG | - | chr3.4:47300134-47300153 | None:intergenic | 45.0% | |
| CCTTCCAGCCTTAAACTTGA+TGG | + | chr3.4:47299732-47299751 | MS.gene027169:CDS | 45.0% | |
| CTGATGACAGTGTTCGTAAC+TGG | + | chr3.4:47300348-47300367 | MS.gene027169:intron | 45.0% | |
| GAAGGATCCATGAGATAGAC+TGG | - | chr3.4:47299717-47299736 | None:intergenic | 45.0% | |
| GAAGTCCCAACACCAAAGAA+CGG | - | chr3.4:47300709-47300728 | None:intergenic | 45.0% | |
| GATGACAGTGTTCGTAACTG+GGG | + | chr3.4:47300350-47300369 | MS.gene027169:intron | 45.0% | |
| GGCCAATCAGACAATGTTCA+AGG | - | chr3.4:47299821-47299840 | None:intergenic | 45.0% | |
| TGCGTGCAGCATCAACTTTA+TGG | - | chr3.4:47299968-47299987 | None:intergenic | 45.0% | |
| ! | ATTTGTTGCTGATGGGGATG+GGG | + | chr3.4:47300838-47300857 | MS.gene027169:CDS | 45.0% |
| ! | CAGACCATCAAGTTTAAGGC+TGG | - | chr3.4:47299739-47299758 | None:intergenic | 45.0% |
| ! | CATTTGTTGCTGATGGGGAT+GGG | + | chr3.4:47300837-47300856 | MS.gene027169:CDS | 45.0% |
| ! | CCATCAAGTTTAAGGCTGGA+AGG | - | chr3.4:47299735-47299754 | None:intergenic | 45.0% |
| ! | GTGCTACTAATGCTGTTGAC+AGG | + | chr3.4:47300270-47300289 | MS.gene027169:CDS | 45.0% |
| ! | TCATTTGTTGCTGATGGGGA+TGG | + | chr3.4:47300836-47300855 | MS.gene027169:CDS | 45.0% |
| !! | CCTAACCGTTCTTTGGTGTT+GGG | + | chr3.4:47300701-47300720 | MS.gene027169:CDS | 45.0% |
| !! | GATGGCGGCATTTTCATGTT+CGG | - | chr3.4:47299799-47299818 | None:intergenic | 45.0% |
| !! | GTTGACAGGTGTCGTTTGAT+TGG | + | chr3.4:47300284-47300303 | MS.gene027169:CDS | 45.0% |
| ACTCGTGCCTATCCTTTGTG+AGG | - | chr3.4:47300393-47300412 | None:intergenic | 50.0% | |
| AGATGCGGTCCATAGCAACA+TGG | - | chr3.4:47300025-47300044 | None:intergenic | 50.0% | |
| AGGATGTTGGCCCTTCAGAA+TGG | + | chr3.4:47300803-47300822 | MS.gene027169:CDS | 50.0% | |
| CCCAACACCAAAGAACGGTT+AGG | - | chr3.4:47300704-47300723 | None:intergenic | 50.0% | |
| GAGGAGTCTCAAGATGACAC+TGG | + | chr3.4:47300758-47300777 | MS.gene027169:CDS | 50.0% | |
| GCAGTTTGAAAAGGAGCAGC+AGG | - | chr3.4:47300731-47300750 | None:intergenic | 50.0% | |
| GCATTCTTGATGAAGGTCCG+TGG | + | chr3.4:47299985-47300004 | MS.gene027169:intron | 50.0% | |
| GCTGCACGCATTCTTGATGA+AGG | + | chr3.4:47299978-47299997 | MS.gene027169:CDS | 50.0% | |
| GTAATTGTAACCCGCTTGCC+TGG | - | chr3.4:47299909-47299928 | None:intergenic | 50.0% | |
| TTCCTCTTCCACAGGTACCT+CGG | + | chr3.4:47300664-47300683 | MS.gene027169:intron | 50.0% | |
| TTTCTGCCTTCCTCTTCCAC+AGG | + | chr3.4:47300656-47300675 | MS.gene027169:intron | 50.0% | |
| TTTGTTGCTGATGGGGATGG+GGG | + | chr3.4:47300839-47300858 | MS.gene027169:CDS | 50.0% | |
| ! | AGGCAACATGTTTGAAGCCG+AGG | - | chr3.4:47300684-47300703 | None:intergenic | 50.0% |
| ! | GCCTAACCGTTCTTTGGTGT+TGG | + | chr3.4:47300700-47300719 | MS.gene027169:CDS | 50.0% |
| ! | TGGTCTGACCTTCTCTGAAG+AGG | + | chr3.4:47299752-47299771 | MS.gene027169:CDS | 50.0% |
| !! | TAGCTGCGTTTTGGGCAGAA+AGG | - | chr3.4:47300592-47300611 | None:intergenic | 50.0% |
| GAATGACACCGGGAGAGATG+CGG | - | chr3.4:47300040-47300059 | None:intergenic | 55.0% | |
| GTGCATAGAAGCCAGGCAAG+CGG | + | chr3.4:47299895-47299914 | MS.gene027169:intron | 55.0% | |
| GTGCCTATCCTTTGTGAGGC+TGG | - | chr3.4:47300389-47300408 | None:intergenic | 55.0% | |
| TGCATAGAAGCCAGGCAAGC+GGG | + | chr3.4:47299896-47299915 | MS.gene027169:intron | 55.0% | |
| ! | GAGGTACCTGTGGAAGAGGA+AGG | - | chr3.4:47300665-47300684 | None:intergenic | 55.0% |
| ! | GTAACGGTCTGCCACCGATT+TGG | - | chr3.4:47299931-47299950 | None:intergenic | 55.0% |
| ! | GTTTGAAGCCGAGGTACCTG+TGG | - | chr3.4:47300675-47300694 | None:intergenic | 55.0% |
| GCTATGGACCGCATCTCTCC+CGG | + | chr3.4:47300029-47300048 | MS.gene027169:intron | 60.0% | |
| ! | AGCCGAGGTACCTGTGGAAG+AGG | - | chr3.4:47300669-47300688 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 47299711 | 47300904 | 47299711 | ID=MS.gene027169 |
| chr3.4 | mRNA | 47299711 | 47300904 | 47299711 | ID=MS.gene027169.t1;Parent=MS.gene027169 |
| chr3.4 | exon | 47299711 | 47299885 | 47299711 | ID=MS.gene027169.t1.exon1;Parent=MS.gene027169.t1 |
| chr3.4 | CDS | 47299711 | 47299885 | 47299711 | ID=cds.MS.gene027169.t1;Parent=MS.gene027169.t1 |
| chr3.4 | exon | 47299943 | 47299999 | 47299943 | ID=MS.gene027169.t1.exon2;Parent=MS.gene027169.t1 |
| chr3.4 | CDS | 47299943 | 47299999 | 47299943 | ID=cds.MS.gene027169.t1;Parent=MS.gene027169.t1 |
| chr3.4 | exon | 47300141 | 47300362 | 47300141 | ID=MS.gene027169.t1.exon3;Parent=MS.gene027169.t1 |
| chr3.4 | CDS | 47300141 | 47300362 | 47300141 | ID=cds.MS.gene027169.t1;Parent=MS.gene027169.t1 |
| chr3.4 | exon | 47300513 | 47300629 | 47300513 | ID=MS.gene027169.t1.exon4;Parent=MS.gene027169.t1 |
| chr3.4 | CDS | 47300513 | 47300629 | 47300513 | ID=cds.MS.gene027169.t1;Parent=MS.gene027169.t1 |
| chr3.4 | exon | 47300678 | 47300904 | 47300678 | ID=MS.gene027169.t1.exon5;Parent=MS.gene027169.t1 |
| chr3.4 | CDS | 47300678 | 47300904 | 47300678 | ID=cds.MS.gene027169.t1;Parent=MS.gene027169.t1 |
| Gene Sequence |
| Protein sequence |
