Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08106.t1 | XP_024639426.1 | 62.7 | 332 | 116 | 4 | 62 | 389 | 1 | 328 | 2.70E-120 | 442.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08106.t1 | A0A396HU84 | 62.0 | 326 | 116 | 4 | 68 | 389 | 1 | 322 | 1.7e-116 | 429.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08106.t1 | MTR_6g033215 | 40.933 | 193 | 112 | 1 | 1 | 193 | 104 | 294 | 1.20e-50 | 173 |
MS.gene08106.t1 | MTR_0010s0370 | 38.312 | 154 | 95 | 0 | 21 | 174 | 27 | 180 | 8.38e-35 | 127 |
MS.gene08106.t1 | MTR_0010s0350 | 38.312 | 154 | 95 | 0 | 21 | 174 | 27 | 180 | 8.38e-35 | 127 |
MS.gene08106.t1 | MTR_6g053230 | 34.503 | 171 | 74 | 3 | 7 | 175 | 30 | 164 | 1.74e-25 | 108 |
MS.gene08106.t1 | MTR_3g053920 | 33.557 | 149 | 82 | 2 | 18 | 166 | 26 | 157 | 6.30e-24 | 100 |
MS.gene08106.t1 | MTR_2g061500 | 37.383 | 107 | 67 | 0 | 15 | 121 | 23 | 129 | 4.50e-21 | 89.0 |
MS.gene08106.t1 | MTR_8g468010 | 47.059 | 85 | 37 | 1 | 109 | 193 | 1 | 77 | 2.14e-20 | 87.4 |
MS.gene08106.t1 | MTR_1g032270 | 46.575 | 73 | 39 | 0 | 93 | 165 | 2 | 74 | 5.99e-19 | 83.6 |
MS.gene08106.t1 | MTR_3g024240 | 33.607 | 122 | 79 | 1 | 75 | 194 | 54 | 175 | 6.90e-18 | 81.6 |
MS.gene08106.t1 | MTR_4g103530 | 39.785 | 93 | 56 | 0 | 47 | 139 | 1 | 93 | 1.01e-15 | 75.5 |
MS.gene08106.t1 | MTR_1g036720 | 41.791 | 67 | 39 | 0 | 28 | 94 | 34 | 100 | 1.28e-15 | 72.8 |
MS.gene08106.t1 | MTR_7g106180 | 25.316 | 158 | 102 | 5 | 22 | 170 | 17 | 167 | 9.61e-12 | 65.1 |
MS.gene08106.t1 | MTR_7g011710 | 31.858 | 113 | 74 | 2 | 47 | 157 | 1 | 112 | 5.48e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08106.t1 | AT2G13450 | 21.622 | 185 | 143 | 1 | 28 | 212 | 39 | 221 | 1.04e-15 | 79.0 |
MS.gene08106.t1 | AT3G31430 | 22.330 | 206 | 155 | 2 | 5 | 209 | 110 | 311 | 2.89e-14 | 73.9 |
MS.gene08106.t1 | AT2G17920 | 20.541 | 185 | 145 | 1 | 28 | 212 | 39 | 221 | 1.65e-12 | 68.2 |
MS.gene08106.t1 | AT4G02000 | 21.898 | 137 | 105 | 1 | 76 | 212 | 7 | 141 | 2.46e-12 | 67.8 |
MS.gene08106.t1 | AT5G25200 | 20.419 | 191 | 144 | 3 | 25 | 212 | 36 | 221 | 3.06e-12 | 68.2 |
MS.gene08106.t1 | AT5G18636 | 20.419 | 191 | 144 | 3 | 25 | 212 | 36 | 221 | 3.17e-12 | 68.2 |
MS.gene08106.t1 | AT3G57587 | 18.919 | 185 | 148 | 1 | 28 | 212 | 39 | 221 | 5.57e-12 | 67.4 |
MS.gene08106.t1 | AT2G02103 | 20.745 | 188 | 141 | 3 | 28 | 212 | 39 | 221 | 5.99e-12 | 67.4 |
MS.gene08106.t1 | AT2G41590 | 19.681 | 188 | 143 | 3 | 28 | 212 | 39 | 221 | 1.50e-11 | 65.9 |
Find 112 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAATATGGGCCCCAGTTT+TGG | 0.229392 | 3.3:-49879590 | None:intergenic |
GAACAGGTTTGTTGGTTAAA+AGG | 0.233604 | 3.3:-49879020 | None:intergenic |
AGACAGTAGTCAAGAGTTTC+AGG | 0.246395 | 3.3:-49878988 | None:intergenic |
ATATAGTCAGCTCGCAAATA+TGG | 0.256149 | 3.3:-49879603 | None:intergenic |
AACATTTCACCAGTGGCTTT+TGG | 0.270707 | 3.3:-49879422 | None:intergenic |
TTGAAAACAATTATGGTAAC+TGG | 0.281335 | 3.3:+49879364 | MS.gene08106:CDS |
ATATTTGCGAGCTGACTATA+TGG | 0.287965 | 3.3:+49879605 | MS.gene08106:CDS |
AATGCAAGACCCTTTGCTTT+TGG | 0.296073 | 3.3:+49879926 | MS.gene08106:CDS |
CAAGTCCACAACCTGCCTTT+TGG | 0.310965 | 3.3:+49879276 | MS.gene08106:CDS |
CTTATCATCATGTCCACTTC+TGG | 0.314535 | 3.3:+49878919 | None:intergenic |
GTAATGTCCACTGTTTCTTT+TGG | 0.332087 | 3.3:-49879084 | None:intergenic |
TTGTGGAGGGAGACCAAAAC+TGG | 0.338208 | 3.3:+49879577 | MS.gene08106:CDS |
CGCCAAGGAGGCTGCAAGTT+GGG | 0.347650 | 3.3:-49880072 | None:intergenic |
AATTGGAACATGAACCGATT+TGG | 0.352535 | 3.3:-49879117 | None:intergenic |
TCGTATTGCAAGACTAATTC+AGG | 0.354853 | 3.3:+49879962 | MS.gene08106:CDS |
AACAGTGGACATTACTTTGA+TGG | 0.373648 | 3.3:+49879092 | MS.gene08106:CDS |
ATCCTACCATTTGTTTGAAC+TGG | 0.374394 | 3.3:-49879873 | None:intergenic |
TGAACTGGCTGAGCTGCATC+TGG | 0.391736 | 3.3:-49879858 | None:intergenic |
AATGATATTCACCGCGTGTT+TGG | 0.392239 | 3.3:+49879723 | MS.gene08106:CDS |
AATCTCGTATGGCCTCTCTT+TGG | 0.393011 | 3.3:+49879058 | MS.gene08106:CDS |
TGCTATGTATGTGGTCTGAT+TGG | 0.394731 | 3.3:+49879513 | MS.gene08106:CDS |
AGTCTGTTACAGTGAAATTT+CGG | 0.407930 | 3.3:+49879469 | MS.gene08106:CDS |
GTCCCAACTTGCAGCCTCCT+TGG | 0.408771 | 3.3:+49880070 | MS.gene08106:CDS |
TGTCTGCATAGCTGAAGAAT+TGG | 0.411409 | 3.3:-49879134 | None:intergenic |
GTCAAGAGTTTCAGGATTGA+AGG | 0.427071 | 3.3:-49878980 | None:intergenic |
TCTCAGATTGTGCAGGTAGT+TGG | 0.443243 | 3.3:+49879897 | MS.gene08106:CDS |
ACGCTTTGAGAAGGGATTTG+TGG | 0.443322 | 3.3:+49879560 | MS.gene08106:CDS |
ACTCTTGACTACTGTCTTGT+TGG | 0.445395 | 3.3:+49878994 | MS.gene08106:CDS |
TGATCTGTACACTATGCCTT+TGG | 0.446327 | 3.3:+49879233 | MS.gene08106:CDS |
TGGATTTATGACTGAATCCA+TGG | 0.450327 | 3.3:+49879296 | MS.gene08106:CDS |
CAGACTGACTACCATCCAAT+AGG | 0.451444 | 3.3:-49879452 | None:intergenic |
TGAATCCATGGGCATACTGC+TGG | 0.454721 | 3.3:+49879308 | MS.gene08106:CDS |
TTAACTTGTGGATCAGCAAA+AGG | 0.457298 | 3.3:-49880119 | None:intergenic |
TATAGTCAGCTCGCAAATAT+GGG | 0.460962 | 3.3:-49879602 | None:intergenic |
GGAAGCAAGGCTCAAGAATC+CGG | 0.462942 | 3.3:+49879983 | MS.gene08106:CDS |
TTGAAGGTATGGAACCGAAC+AGG | 0.463271 | 3.3:-49879036 | None:intergenic |
AGTTAACAAAGATGGTGTTC+TGG | 0.466663 | 3.3:+49880136 | MS.gene08106:CDS |
GTTATCATGCAGCCAAGGAT+TGG | 0.487526 | 3.3:-49879649 | None:intergenic |
TTACTTTGATGGAACCAAAT+CGG | 0.492790 | 3.3:+49879103 | MS.gene08106:CDS |
GCTCAGCCAGTTCAAACAAA+TGG | 0.494808 | 3.3:+49879867 | MS.gene08106:CDS |
ATGGAACCGAACAGGTTTGT+TGG | 0.496076 | 3.3:-49879028 | None:intergenic |
ACACCATCTTTGTTAACTTG+TGG | 0.496318 | 3.3:-49880131 | None:intergenic |
AGAGGCCATACGAGATTTGA+AGG | 0.498291 | 3.3:-49879052 | None:intergenic |
GTGTTTGGAAGGGTGAAGTT+CGG | 0.499065 | 3.3:+49879738 | MS.gene08106:CDS |
ATATTCACCGCGTGTTTGGA+AGG | 0.502019 | 3.3:+49879727 | MS.gene08106:CDS |
CACTCCACAACTCTGATGAA+TGG | 0.507209 | 3.3:+49879808 | MS.gene08106:CDS |
TAAATCCAAAAGGCAGGTTG+TGG | 0.507706 | 3.3:-49879281 | None:intergenic |
CTTGGCGCAAATAATGAGAA+TGG | 0.509777 | 3.3:+49880088 | MS.gene08106:CDS |
AGCTCTCAGTTGGAAGCAAA+TGG | 0.512065 | 3.3:+49880023 | MS.gene08106:CDS |
TTGGCTACATCATCGCCTAC+TGG | 0.522894 | 3.3:-49879630 | None:intergenic |
CCATACGAGATTTGAAGGTA+TGG | 0.526352 | 3.3:-49879047 | None:intergenic |
CATCTCCTTCCAAAAGCAAA+GGG | 0.528477 | 3.3:-49879935 | None:intergenic |
TTGACAATTTCCCACTTGTG+TGG | 0.529499 | 3.3:+49879190 | MS.gene08106:CDS |
GGATTTATGACTGAATCCAT+GGG | 0.529619 | 3.3:+49879297 | MS.gene08106:CDS |
GACTTGCATCCAGCATTCAA+TGG | 0.531097 | 3.3:-49879259 | None:intergenic |
TATTTGCGAGCTGACTATAT+GGG | 0.534635 | 3.3:+49879606 | MS.gene08106:CDS |
TTGGCGCAAATAATGAGAAT+GGG | 0.535272 | 3.3:+49880089 | MS.gene08106:CDS |
GCGATGATGTAGCCAATCCT+TGG | 0.536375 | 3.3:+49879637 | MS.gene08106:CDS |
TTGTTCAAAACGCTTTGAGA+AGG | 0.536665 | 3.3:+49879551 | MS.gene08106:CDS |
TGTTCAAAACGCTTTGAGAA+GGG | 0.538511 | 3.3:+49879552 | MS.gene08106:CDS |
CATTCTCATTATTTGCGCCA+AGG | 0.543691 | 3.3:-49880087 | None:intergenic |
CTTCTGTTATCATGCAGCCA+AGG | 0.544389 | 3.3:-49879654 | None:intergenic |
CTTTGAGAAGGGATTTGTGG+AGG | 0.548243 | 3.3:+49879563 | MS.gene08106:CDS |
GATTCAGTCATAAATCCAAA+AGG | 0.548862 | 3.3:-49879291 | None:intergenic |
CTAGACAACACTTCATTCAC+CGG | 0.549073 | 3.3:-49880002 | None:intergenic |
ATCATTCAGATTTGCAGAAG+GGG | 0.550279 | 3.3:-49879706 | None:intergenic |
CCATACCTTCAAATCTCGTA+TGG | 0.551240 | 3.3:+49879047 | MS.gene08106:CDS |
AGTGTTGTCTAGCTCTCAGT+TGG | 0.552242 | 3.3:+49880013 | MS.gene08106:CDS |
CAGTCATAAATCCAAAAGGC+AGG | 0.554616 | 3.3:-49879287 | None:intergenic |
TCATCTCCTTCCAAAAGCAA+AGG | 0.557820 | 3.3:-49879936 | None:intergenic |
GAATCCATGGGCATACTGCT+GGG | 0.560216 | 3.3:+49879309 | MS.gene08106:CDS |
TTTGAGAAGGGATTTGTGGA+GGG | 0.562570 | 3.3:+49879564 | MS.gene08106:CDS |
ATTCATCAGAGTTGTGGAGT+GGG | 0.563269 | 3.3:-49879806 | None:intergenic |
AACAGAAGAAGAGGGAGACA+AGG | 0.563953 | 3.3:+49879669 | MS.gene08106:CDS |
TATCATTCAGATTTGCAGAA+GGG | 0.567010 | 3.3:-49879707 | None:intergenic |
GGGAAATTGTCAAAGAGCCA+TGG | 0.568753 | 3.3:-49879180 | None:intergenic |
TCAAGAGTTTCAGGATTGAA+GGG | 0.571558 | 3.3:-49878979 | None:intergenic |
ATTTCCCAGCAGTATGCCCA+TGG | 0.571931 | 3.3:-49879313 | None:intergenic |
CTATCCATTCATCAGAGTTG+TGG | 0.572421 | 3.3:-49879812 | None:intergenic |
CTGCATGATAACAGAAGAAG+AGG | 0.572503 | 3.3:+49879660 | MS.gene08106:CDS |
CATACATAGCAAAAGTTCCC+TGG | 0.572692 | 3.3:-49879501 | None:intergenic |
GATCCACAAGTTAACAAAGA+TGG | 0.576460 | 3.3:+49880128 | MS.gene08106:CDS |
ATTCTTCAGCTATGCAGACA+TGG | 0.585185 | 3.3:+49879137 | MS.gene08106:CDS |
CAAGACTAATTCAGGAAGCA+AGG | 0.588287 | 3.3:+49879970 | MS.gene08106:CDS |
GCGCCAAGGAGGCTGCAAGT+TGG | 0.588497 | 3.3:-49880073 | None:intergenic |
GCGGCTAAGAGTGGCCATGA+AGG | 0.589526 | 3.3:+49879398 | MS.gene08106:CDS |
TAGGATGTCTCAGATTGTGC+AGG | 0.594502 | 3.3:+49879890 | MS.gene08106:CDS |
CATGAAGGTCCAAAAGCCAC+TGG | 0.596480 | 3.3:+49879413 | MS.gene08106:CDS |
CTTTGGATACCATTGAATGC+TGG | 0.599710 | 3.3:+49879250 | MS.gene08106:CDS |
TATTCACCGCGTGTTTGGAA+GGG | 0.604164 | 3.3:+49879728 | MS.gene08106:CDS |
ACAATTATGGTAACTGGCGT+AGG | 0.606136 | 3.3:+49879370 | MS.gene08106:CDS |
AAATTTCGGTATGAGAAACC+AGG | 0.614754 | 3.3:+49879483 | MS.gene08106:CDS |
TAGGTACATGCGGCTAAGAG+TGG | 0.617683 | 3.3:+49879389 | MS.gene08106:CDS |
GAATTGTTCAGCAAGGTCCA+TGG | 0.620226 | 3.3:+49879163 | MS.gene08106:CDS |
ATACTGCTGGGAAATCATGT+TGG | 0.622376 | 3.3:+49879321 | MS.gene08106:CDS |
ATATCATTCAGATTTGCAGA+AGG | 0.623759 | 3.3:-49879708 | None:intergenic |
AATTTAAAACATTTCACCAG+TGG | 0.625692 | 3.3:-49879429 | None:intergenic |
TGTGGAGGGAGACCAAAACT+GGG | 0.631316 | 3.3:+49879578 | MS.gene08106:CDS |
CAGCATTCAATGGTATCCAA+AGG | 0.632221 | 3.3:-49879249 | None:intergenic |
AGAAGAAGAGGGAGACAAGG+AGG | 0.635833 | 3.3:+49879672 | MS.gene08106:CDS |
CATTCATCAGAGTTGTGGAG+TGG | 0.636298 | 3.3:-49879807 | None:intergenic |
TTGGACACCAAAAGAAACAG+TGG | 0.651367 | 3.3:+49879077 | MS.gene08106:CDS |
AGCCAGTTCAAACAAATGGT+AGG | 0.660467 | 3.3:+49879871 | MS.gene08106:CDS |
GCTGACTATATGGGACCAGT+AGG | 0.664880 | 3.3:+49879615 | MS.gene08106:CDS |
GTAACTGGCGTAGGTACATG+CGG | 0.667722 | 3.3:+49879379 | MS.gene08106:CDS |
ATGGAACGAATTGTTCAGCA+AGG | 0.677695 | 3.3:+49879156 | MS.gene08106:CDS |
TCTCATTATTTGCGCCAAGG+AGG | 0.678665 | 3.3:-49880084 | None:intergenic |
ACTTGTGGATCAGCAAAAGG+AGG | 0.687722 | 3.3:-49880116 | None:intergenic |
AATTTCGGTATGAGAAACCA+GGG | 0.705898 | 3.3:+49879484 | MS.gene08106:CDS |
TGCATGATAACAGAAGAAGA+GGG | 0.711778 | 3.3:+49879661 | MS.gene08106:CDS |
ACTTCACCCTTCCAAACACG+CGG | 0.738253 | 3.3:-49879734 | None:intergenic |
GTGGAGGGAGACCAAAACTG+GGG | 0.744620 | 3.3:+49879579 | MS.gene08106:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATGATTTTGAAAACAATTA+TGG | + | chr3.3:49879357-49879376 | MS.gene08106:CDS | 15.0% |
!! | TTTGTAAAAAATTAGTTGTC+TGG | - | chr3.3:49879778-49879797 | None:intergenic | 20.0% |
!!! | GAAATGTTTTAAATTCCTAT+TGG | + | chr3.3:49879437-49879456 | MS.gene08106:CDS | 20.0% |
! | TTGAAAACAATTATGGTAAC+TGG | + | chr3.3:49879364-49879383 | MS.gene08106:CDS | 25.0% |
!! | AATTTAAAACATTTCACCAG+TGG | - | chr3.3:49879432-49879451 | None:intergenic | 25.0% |
!!! | CTAATTTTTTACAAACATGC+AGG | + | chr3.3:49879783-49879802 | MS.gene08106:CDS | 25.0% |
!!! | TGTTTTAAATTCCTATTGGA+TGG | + | chr3.3:49879441-49879460 | MS.gene08106:CDS | 25.0% |
AGTCTGTTACAGTGAAATTT+CGG | + | chr3.3:49879469-49879488 | MS.gene08106:CDS | 30.0% | |
ATATCATTCAGATTTGCAGA+AGG | - | chr3.3:49879711-49879730 | None:intergenic | 30.0% | |
GATTCAGTCATAAATCCAAA+AGG | - | chr3.3:49879294-49879313 | None:intergenic | 30.0% | |
TATCATTCAGATTTGCAGAA+GGG | - | chr3.3:49879710-49879729 | None:intergenic | 30.0% | |
TTACTTTGATGGAACCAAAT+CGG | + | chr3.3:49879103-49879122 | MS.gene08106:CDS | 30.0% | |
! | AAATTTTTCTCCACACAAGT+GGG | - | chr3.3:49879203-49879222 | None:intergenic | 30.0% |
! | TTTTAACCAACAAACCTGTT+CGG | + | chr3.3:49879022-49879041 | MS.gene08106:CDS | 30.0% |
!!! | CTGTCCTTCAGATTTTTTTA+GGG | - | chr3.3:49880162-49880181 | None:intergenic | 30.0% |
!!! | TCTGTCCTTCAGATTTTTTT+AGG | - | chr3.3:49880163-49880182 | None:intergenic | 30.0% |
AAATTTCGGTATGAGAAACC+AGG | + | chr3.3:49879483-49879502 | MS.gene08106:CDS | 35.0% | |
AACAGTGGACATTACTTTGA+TGG | + | chr3.3:49879092-49879111 | MS.gene08106:CDS | 35.0% | |
AATTGGAACATGAACCGATT+TGG | - | chr3.3:49879120-49879139 | None:intergenic | 35.0% | |
AATTTCGGTATGAGAAACCA+GGG | + | chr3.3:49879484-49879503 | MS.gene08106:CDS | 35.0% | |
AGTTAACAAAGATGGTGTTC+TGG | + | chr3.3:49880136-49880155 | MS.gene08106:CDS | 35.0% | |
ATATAGTCAGCTCGCAAATA+TGG | - | chr3.3:49879606-49879625 | None:intergenic | 35.0% | |
ATATTTGCGAGCTGACTATA+TGG | + | chr3.3:49879605-49879624 | MS.gene08106:CDS | 35.0% | |
ATCATTCAGATTTGCAGAAG+GGG | - | chr3.3:49879709-49879728 | None:intergenic | 35.0% | |
ATCCTACCATTTGTTTGAAC+TGG | - | chr3.3:49879876-49879895 | None:intergenic | 35.0% | |
GATCCACAAGTTAACAAAGA+TGG | + | chr3.3:49880128-49880147 | MS.gene08106:CDS | 35.0% | |
GGATTTATGACTGAATCCAT+GGG | + | chr3.3:49879297-49879316 | MS.gene08106:CDS | 35.0% | |
GTGTGGAGAAAAATTTCAGT+TGG | + | chr3.3:49879207-49879226 | MS.gene08106:CDS | 35.0% | |
TATAGTCAGCTCGCAAATAT+GGG | - | chr3.3:49879605-49879624 | None:intergenic | 35.0% | |
TATTTGCGAGCTGACTATAT+GGG | + | chr3.3:49879606-49879625 | MS.gene08106:CDS | 35.0% | |
TCAAGAGTTTCAGGATTGAA+GGG | - | chr3.3:49878982-49879001 | None:intergenic | 35.0% | |
TCGTATTGCAAGACTAATTC+AGG | + | chr3.3:49879962-49879981 | MS.gene08106:CDS | 35.0% | |
TGCATGATAACAGAAGAAGA+GGG | + | chr3.3:49879661-49879680 | MS.gene08106:CDS | 35.0% | |
TGGATTTATGACTGAATCCA+TGG | + | chr3.3:49879296-49879315 | MS.gene08106:CDS | 35.0% | |
TTGGCGCAAATAATGAGAAT+GGG | + | chr3.3:49880089-49880108 | MS.gene08106:CDS | 35.0% | |
! | ACACCATCTTTGTTAACTTG+TGG | - | chr3.3:49880134-49880153 | None:intergenic | 35.0% |
! | GAAATTTTTCTCCACACAAG+TGG | - | chr3.3:49879204-49879223 | None:intergenic | 35.0% |
!! | CATTTTGTTGTCTATGTGCA+TGG | - | chr3.3:49880049-49880068 | None:intergenic | 35.0% |
!! | GAACAGGTTTGTTGGTTAAA+AGG | - | chr3.3:49879023-49879042 | None:intergenic | 35.0% |
!! | GTAATGTCCACTGTTTCTTT+TGG | - | chr3.3:49879087-49879106 | None:intergenic | 35.0% |
!! | TGTTCAAAACGCTTTGAGAA+GGG | + | chr3.3:49879552-49879571 | MS.gene08106:CDS | 35.0% |
!! | TTAACTTGTGGATCAGCAAA+AGG | - | chr3.3:49880122-49880141 | None:intergenic | 35.0% |
!! | TTGTTCAAAACGCTTTGAGA+AGG | + | chr3.3:49879551-49879570 | MS.gene08106:CDS | 35.0% |
AATGATATTCACCGCGTGTT+TGG | + | chr3.3:49879723-49879742 | MS.gene08106:CDS | 40.0% | |
ACAATTATGGTAACTGGCGT+AGG | + | chr3.3:49879370-49879389 | MS.gene08106:CDS | 40.0% | |
ACTCTTGACTACTGTCTTGT+TGG | + | chr3.3:49878994-49879013 | MS.gene08106:CDS | 40.0% | |
AGACAGTAGTCAAGAGTTTC+AGG | - | chr3.3:49878991-49879010 | None:intergenic | 40.0% | |
AGCCAGTTCAAACAAATGGT+AGG | + | chr3.3:49879871-49879890 | MS.gene08106:CDS | 40.0% | |
ATACTGCTGGGAAATCATGT+TGG | + | chr3.3:49879321-49879340 | MS.gene08106:CDS | 40.0% | |
ATGGAACGAATTGTTCAGCA+AGG | + | chr3.3:49879156-49879175 | MS.gene08106:CDS | 40.0% | |
ATTCATCAGAGTTGTGGAGT+GGG | - | chr3.3:49879809-49879828 | None:intergenic | 40.0% | |
ATTCTTCAGCTATGCAGACA+TGG | + | chr3.3:49879137-49879156 | MS.gene08106:CDS | 40.0% | |
CAAGACTAATTCAGGAAGCA+AGG | + | chr3.3:49879970-49879989 | MS.gene08106:CDS | 40.0% | |
CAGCATTCAATGGTATCCAA+AGG | - | chr3.3:49879252-49879271 | None:intergenic | 40.0% | |
CAGTCATAAATCCAAAAGGC+AGG | - | chr3.3:49879290-49879309 | None:intergenic | 40.0% | |
CATACATAGCAAAAGTTCCC+TGG | - | chr3.3:49879504-49879523 | None:intergenic | 40.0% | |
CATCTCCTTCCAAAAGCAAA+GGG | - | chr3.3:49879938-49879957 | None:intergenic | 40.0% | |
CATTCTCATTATTTGCGCCA+AGG | - | chr3.3:49880090-49880109 | None:intergenic | 40.0% | |
CCATACCTTCAAATCTCGTA+TGG | + | chr3.3:49879047-49879066 | MS.gene08106:CDS | 40.0% | |
CCATACGAGATTTGAAGGTA+TGG | - | chr3.3:49879050-49879069 | None:intergenic | 40.0% | |
CTAGACAACACTTCATTCAC+CGG | - | chr3.3:49880005-49880024 | None:intergenic | 40.0% | |
CTATCCATTCATCAGAGTTG+TGG | - | chr3.3:49879815-49879834 | None:intergenic | 40.0% | |
CTGCATGATAACAGAAGAAG+AGG | + | chr3.3:49879660-49879679 | MS.gene08106:CDS | 40.0% | |
CTGGCCCTAAAAAAATCTGA+AGG | + | chr3.3:49880155-49880174 | MS.gene08106:CDS | 40.0% | |
CTTGGCGCAAATAATGAGAA+TGG | + | chr3.3:49880088-49880107 | MS.gene08106:CDS | 40.0% | |
CTTTGGATACCATTGAATGC+TGG | + | chr3.3:49879250-49879269 | MS.gene08106:CDS | 40.0% | |
GTCAAGAGTTTCAGGATTGA+AGG | - | chr3.3:49878983-49879002 | None:intergenic | 40.0% | |
TAAATCCAAAAGGCAGGTTG+TGG | - | chr3.3:49879284-49879303 | None:intergenic | 40.0% | |
TCATCTCCTTCCAAAAGCAA+AGG | - | chr3.3:49879939-49879958 | None:intergenic | 40.0% | |
TGATCTGTACACTATGCCTT+TGG | + | chr3.3:49879233-49879252 | MS.gene08106:CDS | 40.0% | |
TGCTATGTATGTGGTCTGAT+TGG | + | chr3.3:49879513-49879532 | MS.gene08106:CDS | 40.0% | |
TGTCTGCATAGCTGAAGAAT+TGG | - | chr3.3:49879137-49879156 | None:intergenic | 40.0% | |
TTGACAATTTCCCACTTGTG+TGG | + | chr3.3:49879190-49879209 | MS.gene08106:CDS | 40.0% | |
TTGGACACCAAAAGAAACAG+TGG | + | chr3.3:49879077-49879096 | MS.gene08106:CDS | 40.0% | |
TTTGAGAAGGGATTTGTGGA+GGG | + | chr3.3:49879564-49879583 | MS.gene08106:CDS | 40.0% | |
! | AACATTTCACCAGTGGCTTT+TGG | - | chr3.3:49879425-49879444 | None:intergenic | 40.0% |
! | AATGCAAGACCCTTTGCTTT+TGG | + | chr3.3:49879926-49879945 | MS.gene08106:CDS | 40.0% |
!! | GGGAACTTTTGCTATGTATG+TGG | + | chr3.3:49879504-49879523 | MS.gene08106:CDS | 40.0% |
!! | TTTGCTTTTGGAAGGAGATG+AGG | + | chr3.3:49879938-49879957 | MS.gene08106:CDS | 40.0% |
!!! | AACACTGTTTTGACCAGAAG+TGG | - | chr3.3:49878935-49878954 | None:intergenic | 40.0% |
!!! | GAGTTTTGAGGAGTAGCATT+GGG | - | chr3.3:49878958-49878977 | None:intergenic | 40.0% |
!!! | TGAGTTTTGAGGAGTAGCAT+TGG | - | chr3.3:49878959-49878978 | None:intergenic | 40.0% |
!!! | TTCTTTTGGTGTCCAAAGAG+AGG | - | chr3.3:49879073-49879092 | None:intergenic | 40.0% |
AACAGAAGAAGAGGGAGACA+AGG | + | chr3.3:49879669-49879688 | MS.gene08106:CDS | 45.0% | |
AATCTCGTATGGCCTCTCTT+TGG | + | chr3.3:49879058-49879077 | MS.gene08106:CDS | 45.0% | |
ACTTGTGGATCAGCAAAAGG+AGG | - | chr3.3:49880119-49880138 | None:intergenic | 45.0% | |
AGAGGCCATACGAGATTTGA+AGG | - | chr3.3:49879055-49879074 | None:intergenic | 45.0% | |
AGCTCTCAGTTGGAAGCAAA+TGG | + | chr3.3:49880023-49880042 | MS.gene08106:CDS | 45.0% | |
ATATTCACCGCGTGTTTGGA+AGG | + | chr3.3:49879727-49879746 | MS.gene08106:CDS | 45.0% | |
ATGGAACCGAACAGGTTTGT+TGG | - | chr3.3:49879031-49879050 | None:intergenic | 45.0% | |
CACTCCACAACTCTGATGAA+TGG | + | chr3.3:49879808-49879827 | MS.gene08106:CDS | 45.0% | |
CAGACTGACTACCATCCAAT+AGG | - | chr3.3:49879455-49879474 | None:intergenic | 45.0% | |
CATTCATCAGAGTTGTGGAG+TGG | - | chr3.3:49879810-49879829 | None:intergenic | 45.0% | |
CTTCTGTTATCATGCAGCCA+AGG | - | chr3.3:49879657-49879676 | None:intergenic | 45.0% | |
GAATTGTTCAGCAAGGTCCA+TGG | + | chr3.3:49879163-49879182 | MS.gene08106:CDS | 45.0% | |
GACTTGCATCCAGCATTCAA+TGG | - | chr3.3:49879262-49879281 | None:intergenic | 45.0% | |
GCTCAGCCAGTTCAAACAAA+TGG | + | chr3.3:49879867-49879886 | MS.gene08106:CDS | 45.0% | |
GGGAAATTGTCAAAGAGCCA+TGG | - | chr3.3:49879183-49879202 | None:intergenic | 45.0% | |
GTGTTTGGAAGGGTGAAGTT+CGG | + | chr3.3:49879738-49879757 | MS.gene08106:CDS | 45.0% | |
GTTATCATGCAGCCAAGGAT+TGG | - | chr3.3:49879652-49879671 | None:intergenic | 45.0% | |
TAGGATGTCTCAGATTGTGC+AGG | + | chr3.3:49879890-49879909 | MS.gene08106:CDS | 45.0% | |
TATTCACCGCGTGTTTGGAA+GGG | + | chr3.3:49879728-49879747 | MS.gene08106:CDS | 45.0% | |
TCTCAGATTGTGCAGGTAGT+TGG | + | chr3.3:49879897-49879916 | MS.gene08106:CDS | 45.0% | |
TCTCATTATTTGCGCCAAGG+AGG | - | chr3.3:49880087-49880106 | None:intergenic | 45.0% | |
! | CTTTGAGAAGGGATTTGTGG+AGG | + | chr3.3:49879563-49879582 | MS.gene08106:CDS | 45.0% |
! | GGATTGAAGGGTGAGTTTTG+AGG | - | chr3.3:49878970-49878989 | None:intergenic | 45.0% |
! | TTGAAGGTATGGAACCGAAC+AGG | - | chr3.3:49879039-49879058 | None:intergenic | 45.0% |
!! | ACGCTTTGAGAAGGGATTTG+TGG | + | chr3.3:49879560-49879579 | MS.gene08106:CDS | 45.0% |
!! | AGTGTTGTCTAGCTCTCAGT+TGG | + | chr3.3:49880013-49880032 | MS.gene08106:CDS | 45.0% |
!! | CAAGACCCTTTGCTTTTGGA+AGG | + | chr3.3:49879930-49879949 | MS.gene08106:CDS | 45.0% |
ACTTCACCCTTCCAAACACG+CGG | - | chr3.3:49879737-49879756 | None:intergenic | 50.0% | |
AGAAGAAGAGGGAGACAAGG+AGG | + | chr3.3:49879672-49879691 | MS.gene08106:CDS | 50.0% | |
ATTTCCCAGCAGTATGCCCA+TGG | - | chr3.3:49879316-49879335 | None:intergenic | 50.0% | |
CATGAAGGTCCAAAAGCCAC+TGG | + | chr3.3:49879413-49879432 | MS.gene08106:CDS | 50.0% | |
GAATCCATGGGCATACTGCT+GGG | + | chr3.3:49879309-49879328 | MS.gene08106:CDS | 50.0% | |
GCGATGATGTAGCCAATCCT+TGG | + | chr3.3:49879637-49879656 | MS.gene08106:CDS | 50.0% | |
GCTGACTATATGGGACCAGT+AGG | + | chr3.3:49879615-49879634 | MS.gene08106:CDS | 50.0% | |
GGAAGCAAGGCTCAAGAATC+CGG | + | chr3.3:49879983-49880002 | MS.gene08106:CDS | 50.0% | |
GTAACTGGCGTAGGTACATG+CGG | + | chr3.3:49879379-49879398 | MS.gene08106:CDS | 50.0% | |
TAGGTACATGCGGCTAAGAG+TGG | + | chr3.3:49879389-49879408 | MS.gene08106:CDS | 50.0% | |
TGAATCCATGGGCATACTGC+TGG | + | chr3.3:49879308-49879327 | MS.gene08106:CDS | 50.0% | |
TGTGGAGGGAGACCAAAACT+GGG | + | chr3.3:49879578-49879597 | MS.gene08106:CDS | 50.0% | |
TTGGCTACATCATCGCCTAC+TGG | - | chr3.3:49879633-49879652 | None:intergenic | 50.0% | |
TTGTGGAGGGAGACCAAAAC+TGG | + | chr3.3:49879577-49879596 | MS.gene08106:CDS | 50.0% | |
! | CAAGTCCACAACCTGCCTTT+TGG | + | chr3.3:49879276-49879295 | MS.gene08106:CDS | 50.0% |
! | CAGTGGCTTTTGGACCTTCA+TGG | - | chr3.3:49879415-49879434 | None:intergenic | 50.0% |
! | GCAAATATGGGCCCCAGTTT+TGG | - | chr3.3:49879593-49879612 | None:intergenic | 50.0% |
GTGGAGGGAGACCAAAACTG+GGG | + | chr3.3:49879579-49879598 | MS.gene08106:CDS | 55.0% | |
TGAACTGGCTGAGCTGCATC+TGG | - | chr3.3:49879861-49879880 | None:intergenic | 55.0% | |
CGCCAAGGAGGCTGCAAGTT+GGG | - | chr3.3:49880075-49880094 | None:intergenic | 60.0% | |
GCGGCTAAGAGTGGCCATGA+AGG | + | chr3.3:49879398-49879417 | MS.gene08106:CDS | 60.0% | |
GTCCCAACTTGCAGCCTCCT+TGG | + | chr3.3:49880070-49880089 | MS.gene08106:CDS | 60.0% | |
GCGCCAAGGAGGCTGCAAGT+TGG | - | chr3.3:49880076-49880095 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 49878928 | 49880187 | 49878928 | ID=MS.gene08106 |
chr3.3 | mRNA | 49878928 | 49880187 | 49878928 | ID=MS.gene08106.t1;Parent=MS.gene08106 |
chr3.3 | exon | 49878928 | 49880187 | 49878928 | ID=MS.gene08106.t1.exon1;Parent=MS.gene08106.t1 |
chr3.3 | CDS | 49878928 | 49880187 | 49878928 | ID=cds.MS.gene08106.t1;Parent=MS.gene08106.t1 |
Gene Sequence |
Protein sequence |