AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08106


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08106.t1 MTR_6g033215 40.933 193 112 1 1 193 104 294 1.20e-50 173
MS.gene08106.t1 MTR_0010s0370 38.312 154 95 0 21 174 27 180 8.38e-35 127
MS.gene08106.t1 MTR_0010s0350 38.312 154 95 0 21 174 27 180 8.38e-35 127
MS.gene08106.t1 MTR_6g053230 34.503 171 74 3 7 175 30 164 1.74e-25 108
MS.gene08106.t1 MTR_3g053920 33.557 149 82 2 18 166 26 157 6.30e-24 100
MS.gene08106.t1 MTR_2g061500 37.383 107 67 0 15 121 23 129 4.50e-21 89.0
MS.gene08106.t1 MTR_8g468010 47.059 85 37 1 109 193 1 77 2.14e-20 87.4
MS.gene08106.t1 MTR_1g032270 46.575 73 39 0 93 165 2 74 5.99e-19 83.6
MS.gene08106.t1 MTR_3g024240 33.607 122 79 1 75 194 54 175 6.90e-18 81.6
MS.gene08106.t1 MTR_4g103530 39.785 93 56 0 47 139 1 93 1.01e-15 75.5
MS.gene08106.t1 MTR_1g036720 41.791 67 39 0 28 94 34 100 1.28e-15 72.8
MS.gene08106.t1 MTR_7g106180 25.316 158 102 5 22 170 17 167 9.61e-12 65.1
MS.gene08106.t1 MTR_7g011710 31.858 113 74 2 47 157 1 112 5.48e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08106.t1 AT2G13450 21.622 185 143 1 28 212 39 221 1.04e-15 79.0
MS.gene08106.t1 AT3G31430 22.330 206 155 2 5 209 110 311 2.89e-14 73.9
MS.gene08106.t1 AT2G17920 20.541 185 145 1 28 212 39 221 1.65e-12 68.2
MS.gene08106.t1 AT4G02000 21.898 137 105 1 76 212 7 141 2.46e-12 67.8
MS.gene08106.t1 AT5G25200 20.419 191 144 3 25 212 36 221 3.06e-12 68.2
MS.gene08106.t1 AT5G18636 20.419 191 144 3 25 212 36 221 3.17e-12 68.2
MS.gene08106.t1 AT3G57587 18.919 185 148 1 28 212 39 221 5.57e-12 67.4
MS.gene08106.t1 AT2G02103 20.745 188 141 3 28 212 39 221 5.99e-12 67.4
MS.gene08106.t1 AT2G41590 19.681 188 143 3 28 212 39 221 1.50e-11 65.9

Find 112 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATATGGGCCCCAGTTT+TGG 0.229392 3.3:-49879590 None:intergenic
GAACAGGTTTGTTGGTTAAA+AGG 0.233604 3.3:-49879020 None:intergenic
AGACAGTAGTCAAGAGTTTC+AGG 0.246395 3.3:-49878988 None:intergenic
ATATAGTCAGCTCGCAAATA+TGG 0.256149 3.3:-49879603 None:intergenic
AACATTTCACCAGTGGCTTT+TGG 0.270707 3.3:-49879422 None:intergenic
TTGAAAACAATTATGGTAAC+TGG 0.281335 3.3:+49879364 MS.gene08106:CDS
ATATTTGCGAGCTGACTATA+TGG 0.287965 3.3:+49879605 MS.gene08106:CDS
AATGCAAGACCCTTTGCTTT+TGG 0.296073 3.3:+49879926 MS.gene08106:CDS
CAAGTCCACAACCTGCCTTT+TGG 0.310965 3.3:+49879276 MS.gene08106:CDS
CTTATCATCATGTCCACTTC+TGG 0.314535 3.3:+49878919 None:intergenic
GTAATGTCCACTGTTTCTTT+TGG 0.332087 3.3:-49879084 None:intergenic
TTGTGGAGGGAGACCAAAAC+TGG 0.338208 3.3:+49879577 MS.gene08106:CDS
CGCCAAGGAGGCTGCAAGTT+GGG 0.347650 3.3:-49880072 None:intergenic
AATTGGAACATGAACCGATT+TGG 0.352535 3.3:-49879117 None:intergenic
TCGTATTGCAAGACTAATTC+AGG 0.354853 3.3:+49879962 MS.gene08106:CDS
AACAGTGGACATTACTTTGA+TGG 0.373648 3.3:+49879092 MS.gene08106:CDS
ATCCTACCATTTGTTTGAAC+TGG 0.374394 3.3:-49879873 None:intergenic
TGAACTGGCTGAGCTGCATC+TGG 0.391736 3.3:-49879858 None:intergenic
AATGATATTCACCGCGTGTT+TGG 0.392239 3.3:+49879723 MS.gene08106:CDS
AATCTCGTATGGCCTCTCTT+TGG 0.393011 3.3:+49879058 MS.gene08106:CDS
TGCTATGTATGTGGTCTGAT+TGG 0.394731 3.3:+49879513 MS.gene08106:CDS
AGTCTGTTACAGTGAAATTT+CGG 0.407930 3.3:+49879469 MS.gene08106:CDS
GTCCCAACTTGCAGCCTCCT+TGG 0.408771 3.3:+49880070 MS.gene08106:CDS
TGTCTGCATAGCTGAAGAAT+TGG 0.411409 3.3:-49879134 None:intergenic
GTCAAGAGTTTCAGGATTGA+AGG 0.427071 3.3:-49878980 None:intergenic
TCTCAGATTGTGCAGGTAGT+TGG 0.443243 3.3:+49879897 MS.gene08106:CDS
ACGCTTTGAGAAGGGATTTG+TGG 0.443322 3.3:+49879560 MS.gene08106:CDS
ACTCTTGACTACTGTCTTGT+TGG 0.445395 3.3:+49878994 MS.gene08106:CDS
TGATCTGTACACTATGCCTT+TGG 0.446327 3.3:+49879233 MS.gene08106:CDS
TGGATTTATGACTGAATCCA+TGG 0.450327 3.3:+49879296 MS.gene08106:CDS
CAGACTGACTACCATCCAAT+AGG 0.451444 3.3:-49879452 None:intergenic
TGAATCCATGGGCATACTGC+TGG 0.454721 3.3:+49879308 MS.gene08106:CDS
TTAACTTGTGGATCAGCAAA+AGG 0.457298 3.3:-49880119 None:intergenic
TATAGTCAGCTCGCAAATAT+GGG 0.460962 3.3:-49879602 None:intergenic
GGAAGCAAGGCTCAAGAATC+CGG 0.462942 3.3:+49879983 MS.gene08106:CDS
TTGAAGGTATGGAACCGAAC+AGG 0.463271 3.3:-49879036 None:intergenic
AGTTAACAAAGATGGTGTTC+TGG 0.466663 3.3:+49880136 MS.gene08106:CDS
GTTATCATGCAGCCAAGGAT+TGG 0.487526 3.3:-49879649 None:intergenic
TTACTTTGATGGAACCAAAT+CGG 0.492790 3.3:+49879103 MS.gene08106:CDS
GCTCAGCCAGTTCAAACAAA+TGG 0.494808 3.3:+49879867 MS.gene08106:CDS
ATGGAACCGAACAGGTTTGT+TGG 0.496076 3.3:-49879028 None:intergenic
ACACCATCTTTGTTAACTTG+TGG 0.496318 3.3:-49880131 None:intergenic
AGAGGCCATACGAGATTTGA+AGG 0.498291 3.3:-49879052 None:intergenic
GTGTTTGGAAGGGTGAAGTT+CGG 0.499065 3.3:+49879738 MS.gene08106:CDS
ATATTCACCGCGTGTTTGGA+AGG 0.502019 3.3:+49879727 MS.gene08106:CDS
CACTCCACAACTCTGATGAA+TGG 0.507209 3.3:+49879808 MS.gene08106:CDS
TAAATCCAAAAGGCAGGTTG+TGG 0.507706 3.3:-49879281 None:intergenic
CTTGGCGCAAATAATGAGAA+TGG 0.509777 3.3:+49880088 MS.gene08106:CDS
AGCTCTCAGTTGGAAGCAAA+TGG 0.512065 3.3:+49880023 MS.gene08106:CDS
TTGGCTACATCATCGCCTAC+TGG 0.522894 3.3:-49879630 None:intergenic
CCATACGAGATTTGAAGGTA+TGG 0.526352 3.3:-49879047 None:intergenic
CATCTCCTTCCAAAAGCAAA+GGG 0.528477 3.3:-49879935 None:intergenic
TTGACAATTTCCCACTTGTG+TGG 0.529499 3.3:+49879190 MS.gene08106:CDS
GGATTTATGACTGAATCCAT+GGG 0.529619 3.3:+49879297 MS.gene08106:CDS
GACTTGCATCCAGCATTCAA+TGG 0.531097 3.3:-49879259 None:intergenic
TATTTGCGAGCTGACTATAT+GGG 0.534635 3.3:+49879606 MS.gene08106:CDS
TTGGCGCAAATAATGAGAAT+GGG 0.535272 3.3:+49880089 MS.gene08106:CDS
GCGATGATGTAGCCAATCCT+TGG 0.536375 3.3:+49879637 MS.gene08106:CDS
TTGTTCAAAACGCTTTGAGA+AGG 0.536665 3.3:+49879551 MS.gene08106:CDS
TGTTCAAAACGCTTTGAGAA+GGG 0.538511 3.3:+49879552 MS.gene08106:CDS
CATTCTCATTATTTGCGCCA+AGG 0.543691 3.3:-49880087 None:intergenic
CTTCTGTTATCATGCAGCCA+AGG 0.544389 3.3:-49879654 None:intergenic
CTTTGAGAAGGGATTTGTGG+AGG 0.548243 3.3:+49879563 MS.gene08106:CDS
GATTCAGTCATAAATCCAAA+AGG 0.548862 3.3:-49879291 None:intergenic
CTAGACAACACTTCATTCAC+CGG 0.549073 3.3:-49880002 None:intergenic
ATCATTCAGATTTGCAGAAG+GGG 0.550279 3.3:-49879706 None:intergenic
CCATACCTTCAAATCTCGTA+TGG 0.551240 3.3:+49879047 MS.gene08106:CDS
AGTGTTGTCTAGCTCTCAGT+TGG 0.552242 3.3:+49880013 MS.gene08106:CDS
CAGTCATAAATCCAAAAGGC+AGG 0.554616 3.3:-49879287 None:intergenic
TCATCTCCTTCCAAAAGCAA+AGG 0.557820 3.3:-49879936 None:intergenic
GAATCCATGGGCATACTGCT+GGG 0.560216 3.3:+49879309 MS.gene08106:CDS
TTTGAGAAGGGATTTGTGGA+GGG 0.562570 3.3:+49879564 MS.gene08106:CDS
ATTCATCAGAGTTGTGGAGT+GGG 0.563269 3.3:-49879806 None:intergenic
AACAGAAGAAGAGGGAGACA+AGG 0.563953 3.3:+49879669 MS.gene08106:CDS
TATCATTCAGATTTGCAGAA+GGG 0.567010 3.3:-49879707 None:intergenic
GGGAAATTGTCAAAGAGCCA+TGG 0.568753 3.3:-49879180 None:intergenic
TCAAGAGTTTCAGGATTGAA+GGG 0.571558 3.3:-49878979 None:intergenic
ATTTCCCAGCAGTATGCCCA+TGG 0.571931 3.3:-49879313 None:intergenic
CTATCCATTCATCAGAGTTG+TGG 0.572421 3.3:-49879812 None:intergenic
CTGCATGATAACAGAAGAAG+AGG 0.572503 3.3:+49879660 MS.gene08106:CDS
CATACATAGCAAAAGTTCCC+TGG 0.572692 3.3:-49879501 None:intergenic
GATCCACAAGTTAACAAAGA+TGG 0.576460 3.3:+49880128 MS.gene08106:CDS
ATTCTTCAGCTATGCAGACA+TGG 0.585185 3.3:+49879137 MS.gene08106:CDS
CAAGACTAATTCAGGAAGCA+AGG 0.588287 3.3:+49879970 MS.gene08106:CDS
GCGCCAAGGAGGCTGCAAGT+TGG 0.588497 3.3:-49880073 None:intergenic
GCGGCTAAGAGTGGCCATGA+AGG 0.589526 3.3:+49879398 MS.gene08106:CDS
TAGGATGTCTCAGATTGTGC+AGG 0.594502 3.3:+49879890 MS.gene08106:CDS
CATGAAGGTCCAAAAGCCAC+TGG 0.596480 3.3:+49879413 MS.gene08106:CDS
CTTTGGATACCATTGAATGC+TGG 0.599710 3.3:+49879250 MS.gene08106:CDS
TATTCACCGCGTGTTTGGAA+GGG 0.604164 3.3:+49879728 MS.gene08106:CDS
ACAATTATGGTAACTGGCGT+AGG 0.606136 3.3:+49879370 MS.gene08106:CDS
AAATTTCGGTATGAGAAACC+AGG 0.614754 3.3:+49879483 MS.gene08106:CDS
TAGGTACATGCGGCTAAGAG+TGG 0.617683 3.3:+49879389 MS.gene08106:CDS
GAATTGTTCAGCAAGGTCCA+TGG 0.620226 3.3:+49879163 MS.gene08106:CDS
ATACTGCTGGGAAATCATGT+TGG 0.622376 3.3:+49879321 MS.gene08106:CDS
ATATCATTCAGATTTGCAGA+AGG 0.623759 3.3:-49879708 None:intergenic
AATTTAAAACATTTCACCAG+TGG 0.625692 3.3:-49879429 None:intergenic
TGTGGAGGGAGACCAAAACT+GGG 0.631316 3.3:+49879578 MS.gene08106:CDS
CAGCATTCAATGGTATCCAA+AGG 0.632221 3.3:-49879249 None:intergenic
AGAAGAAGAGGGAGACAAGG+AGG 0.635833 3.3:+49879672 MS.gene08106:CDS
CATTCATCAGAGTTGTGGAG+TGG 0.636298 3.3:-49879807 None:intergenic
TTGGACACCAAAAGAAACAG+TGG 0.651367 3.3:+49879077 MS.gene08106:CDS
AGCCAGTTCAAACAAATGGT+AGG 0.660467 3.3:+49879871 MS.gene08106:CDS
GCTGACTATATGGGACCAGT+AGG 0.664880 3.3:+49879615 MS.gene08106:CDS
GTAACTGGCGTAGGTACATG+CGG 0.667722 3.3:+49879379 MS.gene08106:CDS
ATGGAACGAATTGTTCAGCA+AGG 0.677695 3.3:+49879156 MS.gene08106:CDS
TCTCATTATTTGCGCCAAGG+AGG 0.678665 3.3:-49880084 None:intergenic
ACTTGTGGATCAGCAAAAGG+AGG 0.687722 3.3:-49880116 None:intergenic
AATTTCGGTATGAGAAACCA+GGG 0.705898 3.3:+49879484 MS.gene08106:CDS
TGCATGATAACAGAAGAAGA+GGG 0.711778 3.3:+49879661 MS.gene08106:CDS
ACTTCACCCTTCCAAACACG+CGG 0.738253 3.3:-49879734 None:intergenic
GTGGAGGGAGACCAAAACTG+GGG 0.744620 3.3:+49879579 MS.gene08106:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGATTTTGAAAACAATTA+TGG + chr3.3:49879357-49879376 MS.gene08106:CDS 15.0%
!! TTTGTAAAAAATTAGTTGTC+TGG - chr3.3:49879778-49879797 None:intergenic 20.0%
!!! GAAATGTTTTAAATTCCTAT+TGG + chr3.3:49879437-49879456 MS.gene08106:CDS 20.0%
! TTGAAAACAATTATGGTAAC+TGG + chr3.3:49879364-49879383 MS.gene08106:CDS 25.0%
!! AATTTAAAACATTTCACCAG+TGG - chr3.3:49879432-49879451 None:intergenic 25.0%
!!! CTAATTTTTTACAAACATGC+AGG + chr3.3:49879783-49879802 MS.gene08106:CDS 25.0%
!!! TGTTTTAAATTCCTATTGGA+TGG + chr3.3:49879441-49879460 MS.gene08106:CDS 25.0%
AGTCTGTTACAGTGAAATTT+CGG + chr3.3:49879469-49879488 MS.gene08106:CDS 30.0%
ATATCATTCAGATTTGCAGA+AGG - chr3.3:49879711-49879730 None:intergenic 30.0%
GATTCAGTCATAAATCCAAA+AGG - chr3.3:49879294-49879313 None:intergenic 30.0%
TATCATTCAGATTTGCAGAA+GGG - chr3.3:49879710-49879729 None:intergenic 30.0%
TTACTTTGATGGAACCAAAT+CGG + chr3.3:49879103-49879122 MS.gene08106:CDS 30.0%
! AAATTTTTCTCCACACAAGT+GGG - chr3.3:49879203-49879222 None:intergenic 30.0%
! TTTTAACCAACAAACCTGTT+CGG + chr3.3:49879022-49879041 MS.gene08106:CDS 30.0%
!!! CTGTCCTTCAGATTTTTTTA+GGG - chr3.3:49880162-49880181 None:intergenic 30.0%
!!! TCTGTCCTTCAGATTTTTTT+AGG - chr3.3:49880163-49880182 None:intergenic 30.0%
AAATTTCGGTATGAGAAACC+AGG + chr3.3:49879483-49879502 MS.gene08106:CDS 35.0%
AACAGTGGACATTACTTTGA+TGG + chr3.3:49879092-49879111 MS.gene08106:CDS 35.0%
AATTGGAACATGAACCGATT+TGG - chr3.3:49879120-49879139 None:intergenic 35.0%
AATTTCGGTATGAGAAACCA+GGG + chr3.3:49879484-49879503 MS.gene08106:CDS 35.0%
AGTTAACAAAGATGGTGTTC+TGG + chr3.3:49880136-49880155 MS.gene08106:CDS 35.0%
ATATAGTCAGCTCGCAAATA+TGG - chr3.3:49879606-49879625 None:intergenic 35.0%
ATATTTGCGAGCTGACTATA+TGG + chr3.3:49879605-49879624 MS.gene08106:CDS 35.0%
ATCATTCAGATTTGCAGAAG+GGG - chr3.3:49879709-49879728 None:intergenic 35.0%
ATCCTACCATTTGTTTGAAC+TGG - chr3.3:49879876-49879895 None:intergenic 35.0%
GATCCACAAGTTAACAAAGA+TGG + chr3.3:49880128-49880147 MS.gene08106:CDS 35.0%
GGATTTATGACTGAATCCAT+GGG + chr3.3:49879297-49879316 MS.gene08106:CDS 35.0%
GTGTGGAGAAAAATTTCAGT+TGG + chr3.3:49879207-49879226 MS.gene08106:CDS 35.0%
TATAGTCAGCTCGCAAATAT+GGG - chr3.3:49879605-49879624 None:intergenic 35.0%
TATTTGCGAGCTGACTATAT+GGG + chr3.3:49879606-49879625 MS.gene08106:CDS 35.0%
TCAAGAGTTTCAGGATTGAA+GGG - chr3.3:49878982-49879001 None:intergenic 35.0%
TCGTATTGCAAGACTAATTC+AGG + chr3.3:49879962-49879981 MS.gene08106:CDS 35.0%
TGCATGATAACAGAAGAAGA+GGG + chr3.3:49879661-49879680 MS.gene08106:CDS 35.0%
TGGATTTATGACTGAATCCA+TGG + chr3.3:49879296-49879315 MS.gene08106:CDS 35.0%
TTGGCGCAAATAATGAGAAT+GGG + chr3.3:49880089-49880108 MS.gene08106:CDS 35.0%
! ACACCATCTTTGTTAACTTG+TGG - chr3.3:49880134-49880153 None:intergenic 35.0%
! GAAATTTTTCTCCACACAAG+TGG - chr3.3:49879204-49879223 None:intergenic 35.0%
!! CATTTTGTTGTCTATGTGCA+TGG - chr3.3:49880049-49880068 None:intergenic 35.0%
!! GAACAGGTTTGTTGGTTAAA+AGG - chr3.3:49879023-49879042 None:intergenic 35.0%
!! GTAATGTCCACTGTTTCTTT+TGG - chr3.3:49879087-49879106 None:intergenic 35.0%
!! TGTTCAAAACGCTTTGAGAA+GGG + chr3.3:49879552-49879571 MS.gene08106:CDS 35.0%
!! TTAACTTGTGGATCAGCAAA+AGG - chr3.3:49880122-49880141 None:intergenic 35.0%
!! TTGTTCAAAACGCTTTGAGA+AGG + chr3.3:49879551-49879570 MS.gene08106:CDS 35.0%
AATGATATTCACCGCGTGTT+TGG + chr3.3:49879723-49879742 MS.gene08106:CDS 40.0%
ACAATTATGGTAACTGGCGT+AGG + chr3.3:49879370-49879389 MS.gene08106:CDS 40.0%
ACTCTTGACTACTGTCTTGT+TGG + chr3.3:49878994-49879013 MS.gene08106:CDS 40.0%
AGACAGTAGTCAAGAGTTTC+AGG - chr3.3:49878991-49879010 None:intergenic 40.0%
AGCCAGTTCAAACAAATGGT+AGG + chr3.3:49879871-49879890 MS.gene08106:CDS 40.0%
ATACTGCTGGGAAATCATGT+TGG + chr3.3:49879321-49879340 MS.gene08106:CDS 40.0%
ATGGAACGAATTGTTCAGCA+AGG + chr3.3:49879156-49879175 MS.gene08106:CDS 40.0%
ATTCATCAGAGTTGTGGAGT+GGG - chr3.3:49879809-49879828 None:intergenic 40.0%
ATTCTTCAGCTATGCAGACA+TGG + chr3.3:49879137-49879156 MS.gene08106:CDS 40.0%
CAAGACTAATTCAGGAAGCA+AGG + chr3.3:49879970-49879989 MS.gene08106:CDS 40.0%
CAGCATTCAATGGTATCCAA+AGG - chr3.3:49879252-49879271 None:intergenic 40.0%
CAGTCATAAATCCAAAAGGC+AGG - chr3.3:49879290-49879309 None:intergenic 40.0%
CATACATAGCAAAAGTTCCC+TGG - chr3.3:49879504-49879523 None:intergenic 40.0%
CATCTCCTTCCAAAAGCAAA+GGG - chr3.3:49879938-49879957 None:intergenic 40.0%
CATTCTCATTATTTGCGCCA+AGG - chr3.3:49880090-49880109 None:intergenic 40.0%
CCATACCTTCAAATCTCGTA+TGG + chr3.3:49879047-49879066 MS.gene08106:CDS 40.0%
CCATACGAGATTTGAAGGTA+TGG - chr3.3:49879050-49879069 None:intergenic 40.0%
CTAGACAACACTTCATTCAC+CGG - chr3.3:49880005-49880024 None:intergenic 40.0%
CTATCCATTCATCAGAGTTG+TGG - chr3.3:49879815-49879834 None:intergenic 40.0%
CTGCATGATAACAGAAGAAG+AGG + chr3.3:49879660-49879679 MS.gene08106:CDS 40.0%
CTGGCCCTAAAAAAATCTGA+AGG + chr3.3:49880155-49880174 MS.gene08106:CDS 40.0%
CTTGGCGCAAATAATGAGAA+TGG + chr3.3:49880088-49880107 MS.gene08106:CDS 40.0%
CTTTGGATACCATTGAATGC+TGG + chr3.3:49879250-49879269 MS.gene08106:CDS 40.0%
GTCAAGAGTTTCAGGATTGA+AGG - chr3.3:49878983-49879002 None:intergenic 40.0%
TAAATCCAAAAGGCAGGTTG+TGG - chr3.3:49879284-49879303 None:intergenic 40.0%
TCATCTCCTTCCAAAAGCAA+AGG - chr3.3:49879939-49879958 None:intergenic 40.0%
TGATCTGTACACTATGCCTT+TGG + chr3.3:49879233-49879252 MS.gene08106:CDS 40.0%
TGCTATGTATGTGGTCTGAT+TGG + chr3.3:49879513-49879532 MS.gene08106:CDS 40.0%
TGTCTGCATAGCTGAAGAAT+TGG - chr3.3:49879137-49879156 None:intergenic 40.0%
TTGACAATTTCCCACTTGTG+TGG + chr3.3:49879190-49879209 MS.gene08106:CDS 40.0%
TTGGACACCAAAAGAAACAG+TGG + chr3.3:49879077-49879096 MS.gene08106:CDS 40.0%
TTTGAGAAGGGATTTGTGGA+GGG + chr3.3:49879564-49879583 MS.gene08106:CDS 40.0%
! AACATTTCACCAGTGGCTTT+TGG - chr3.3:49879425-49879444 None:intergenic 40.0%
! AATGCAAGACCCTTTGCTTT+TGG + chr3.3:49879926-49879945 MS.gene08106:CDS 40.0%
!! GGGAACTTTTGCTATGTATG+TGG + chr3.3:49879504-49879523 MS.gene08106:CDS 40.0%
!! TTTGCTTTTGGAAGGAGATG+AGG + chr3.3:49879938-49879957 MS.gene08106:CDS 40.0%
!!! AACACTGTTTTGACCAGAAG+TGG - chr3.3:49878935-49878954 None:intergenic 40.0%
!!! GAGTTTTGAGGAGTAGCATT+GGG - chr3.3:49878958-49878977 None:intergenic 40.0%
!!! TGAGTTTTGAGGAGTAGCAT+TGG - chr3.3:49878959-49878978 None:intergenic 40.0%
!!! TTCTTTTGGTGTCCAAAGAG+AGG - chr3.3:49879073-49879092 None:intergenic 40.0%
AACAGAAGAAGAGGGAGACA+AGG + chr3.3:49879669-49879688 MS.gene08106:CDS 45.0%
AATCTCGTATGGCCTCTCTT+TGG + chr3.3:49879058-49879077 MS.gene08106:CDS 45.0%
ACTTGTGGATCAGCAAAAGG+AGG - chr3.3:49880119-49880138 None:intergenic 45.0%
AGAGGCCATACGAGATTTGA+AGG - chr3.3:49879055-49879074 None:intergenic 45.0%
AGCTCTCAGTTGGAAGCAAA+TGG + chr3.3:49880023-49880042 MS.gene08106:CDS 45.0%
ATATTCACCGCGTGTTTGGA+AGG + chr3.3:49879727-49879746 MS.gene08106:CDS 45.0%
ATGGAACCGAACAGGTTTGT+TGG - chr3.3:49879031-49879050 None:intergenic 45.0%
CACTCCACAACTCTGATGAA+TGG + chr3.3:49879808-49879827 MS.gene08106:CDS 45.0%
CAGACTGACTACCATCCAAT+AGG - chr3.3:49879455-49879474 None:intergenic 45.0%
CATTCATCAGAGTTGTGGAG+TGG - chr3.3:49879810-49879829 None:intergenic 45.0%
CTTCTGTTATCATGCAGCCA+AGG - chr3.3:49879657-49879676 None:intergenic 45.0%
GAATTGTTCAGCAAGGTCCA+TGG + chr3.3:49879163-49879182 MS.gene08106:CDS 45.0%
GACTTGCATCCAGCATTCAA+TGG - chr3.3:49879262-49879281 None:intergenic 45.0%
GCTCAGCCAGTTCAAACAAA+TGG + chr3.3:49879867-49879886 MS.gene08106:CDS 45.0%
GGGAAATTGTCAAAGAGCCA+TGG - chr3.3:49879183-49879202 None:intergenic 45.0%
GTGTTTGGAAGGGTGAAGTT+CGG + chr3.3:49879738-49879757 MS.gene08106:CDS 45.0%
GTTATCATGCAGCCAAGGAT+TGG - chr3.3:49879652-49879671 None:intergenic 45.0%
TAGGATGTCTCAGATTGTGC+AGG + chr3.3:49879890-49879909 MS.gene08106:CDS 45.0%
TATTCACCGCGTGTTTGGAA+GGG + chr3.3:49879728-49879747 MS.gene08106:CDS 45.0%
TCTCAGATTGTGCAGGTAGT+TGG + chr3.3:49879897-49879916 MS.gene08106:CDS 45.0%
TCTCATTATTTGCGCCAAGG+AGG - chr3.3:49880087-49880106 None:intergenic 45.0%
! CTTTGAGAAGGGATTTGTGG+AGG + chr3.3:49879563-49879582 MS.gene08106:CDS 45.0%
! GGATTGAAGGGTGAGTTTTG+AGG - chr3.3:49878970-49878989 None:intergenic 45.0%
! TTGAAGGTATGGAACCGAAC+AGG - chr3.3:49879039-49879058 None:intergenic 45.0%
!! ACGCTTTGAGAAGGGATTTG+TGG + chr3.3:49879560-49879579 MS.gene08106:CDS 45.0%
!! AGTGTTGTCTAGCTCTCAGT+TGG + chr3.3:49880013-49880032 MS.gene08106:CDS 45.0%
!! CAAGACCCTTTGCTTTTGGA+AGG + chr3.3:49879930-49879949 MS.gene08106:CDS 45.0%
ACTTCACCCTTCCAAACACG+CGG - chr3.3:49879737-49879756 None:intergenic 50.0%
AGAAGAAGAGGGAGACAAGG+AGG + chr3.3:49879672-49879691 MS.gene08106:CDS 50.0%
ATTTCCCAGCAGTATGCCCA+TGG - chr3.3:49879316-49879335 None:intergenic 50.0%
CATGAAGGTCCAAAAGCCAC+TGG + chr3.3:49879413-49879432 MS.gene08106:CDS 50.0%
GAATCCATGGGCATACTGCT+GGG + chr3.3:49879309-49879328 MS.gene08106:CDS 50.0%
GCGATGATGTAGCCAATCCT+TGG + chr3.3:49879637-49879656 MS.gene08106:CDS 50.0%
GCTGACTATATGGGACCAGT+AGG + chr3.3:49879615-49879634 MS.gene08106:CDS 50.0%
GGAAGCAAGGCTCAAGAATC+CGG + chr3.3:49879983-49880002 MS.gene08106:CDS 50.0%
GTAACTGGCGTAGGTACATG+CGG + chr3.3:49879379-49879398 MS.gene08106:CDS 50.0%
TAGGTACATGCGGCTAAGAG+TGG + chr3.3:49879389-49879408 MS.gene08106:CDS 50.0%
TGAATCCATGGGCATACTGC+TGG + chr3.3:49879308-49879327 MS.gene08106:CDS 50.0%
TGTGGAGGGAGACCAAAACT+GGG + chr3.3:49879578-49879597 MS.gene08106:CDS 50.0%
TTGGCTACATCATCGCCTAC+TGG - chr3.3:49879633-49879652 None:intergenic 50.0%
TTGTGGAGGGAGACCAAAAC+TGG + chr3.3:49879577-49879596 MS.gene08106:CDS 50.0%
! CAAGTCCACAACCTGCCTTT+TGG + chr3.3:49879276-49879295 MS.gene08106:CDS 50.0%
! CAGTGGCTTTTGGACCTTCA+TGG - chr3.3:49879415-49879434 None:intergenic 50.0%
! GCAAATATGGGCCCCAGTTT+TGG - chr3.3:49879593-49879612 None:intergenic 50.0%
GTGGAGGGAGACCAAAACTG+GGG + chr3.3:49879579-49879598 MS.gene08106:CDS 55.0%
TGAACTGGCTGAGCTGCATC+TGG - chr3.3:49879861-49879880 None:intergenic 55.0%
CGCCAAGGAGGCTGCAAGTT+GGG - chr3.3:49880075-49880094 None:intergenic 60.0%
GCGGCTAAGAGTGGCCATGA+AGG + chr3.3:49879398-49879417 MS.gene08106:CDS 60.0%
GTCCCAACTTGCAGCCTCCT+TGG + chr3.3:49880070-49880089 MS.gene08106:CDS 60.0%
GCGCCAAGGAGGCTGCAAGT+TGG - chr3.3:49880076-49880095 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 49878928 49880187 49878928 ID=MS.gene08106
chr3.3 mRNA 49878928 49880187 49878928 ID=MS.gene08106.t1;Parent=MS.gene08106
chr3.3 exon 49878928 49880187 49878928 ID=MS.gene08106.t1.exon1;Parent=MS.gene08106.t1
chr3.3 CDS 49878928 49880187 49878928 ID=cds.MS.gene08106.t1;Parent=MS.gene08106.t1
Gene Sequence

>MS.gene08106

ATGTCCACTTCTGGTCAAAACAGTGTTCCCAATGCTACTCCTCAAAACTCACCCTTCAATCCTGAAACTCTTGACTACTGTCTTGTTGGTCGCCTTTTAACCAACAAACCTGTTCGGTTCCATACCTTCAAATCTCGTATGGCCTCTCTTTGGACACCAAAAGAAACAGTGGACATTACTTTGATGGAACCAAATCGGTTCATGTTCCAATTCTTCAGCTATGCAGACATGGAACGAATTGTTCAGCAAGGTCCATGGCTCTTTGACAATTTCCCACTTGTGTGGAGAAAAATTTCAGTTGGAAGTGATCTGTACACTATGCCTTTGGATACCATTGAATGCTGGATGCAAGTCCACAACCTGCCTTTTGGATTTATGACTGAATCCATGGGCATACTGCTGGGAAATCATGTTGGCAGACTTGTAAAATATGATTTTGAAAACAATTATGGTAACTGGCGTAGGTACATGCGGCTAAGAGTGGCCATGAAGGTCCAAAAGCCACTGGTGAAATGTTTTAAATTCCTATTGGATGGTAGTCAGTCTGTTACAGTGAAATTTCGGTATGAGAAACCAGGGAACTTTTGCTATGTATGTGGTCTGATTGGACACACAGAGTCATCTTGTTCAAAACGCTTTGAGAAGGGATTTGTGGAGGGAGACCAAAACTGGGGCCCATATTTGCGAGCTGACTATATGGGACCAGTAGGCGATGATGTAGCCAATCCTTGGCTGCATGATAACAGAAGAAGAGGGAGACAAGGAGGAAGAGCGAGAGCCCCTTCTGCAAATCTGAATGATATTCACCGCGTGTTTGGAAGGGTGAAGTTCGGACGAGATGTCAGCACCAGACAACTAATTTTTTACAAACATGCAGGCCCACTCCACAACTCTGATGAATGGATAGTAGTTAGAAGCATTAATAATACTCCAGATGCAGCTCAGCCAGTTCAAACAAATGGTAGGATGTCTCAGATTGTGCAGGTAGTTGGTTCGAAAATGCAAGACCCTTTGCTTTTGGAAGGAGATGAGGATCGTATTGCAAGACTAATTCAGGAAGCAAGGCTCAAGAATCCGGTGAATGAAGTGTTGTCTAGCTCTCAGTTGGAAGCAAATGGCCATGCACATAGACAACAAAATGTGTCCCAACTTGCAGCCTCCTTGGCGCAAATAATGAGAATGGGAGCTCCTCCTTTTGCTGATCCACAAGTTAACAAAGATGGTGTTCTGGCCCTAAAAAAATCTGAAGGACAGAAGTAG

Protein sequence

>MS.gene08106.t1

MSTSGQNSVPNATPQNSPFNPETLDYCLVGRLLTNKPVRFHTFKSRMASLWTPKETVDITLMEPNRFMFQFFSYADMERIVQQGPWLFDNFPLVWRKISVGSDLYTMPLDTIECWMQVHNLPFGFMTESMGILLGNHVGRLVKYDFENNYGNWRRYMRLRVAMKVQKPLVKCFKFLLDGSQSVTVKFRYEKPGNFCYVCGLIGHTESSCSKRFEKGFVEGDQNWGPYLRADYMGPVGDDVANPWLHDNRRRGRQGGRARAPSANLNDIHRVFGRVKFGRDVSTRQLIFYKHAGPLHNSDEWIVVRSINNTPDAAQPVQTNGRMSQIVQVVGSKMQDPLLLEGDEDRIARLIQEARLKNPVNEVLSSSQLEANGHAHRQQNVSQLAASLAQIMRMGAPPFADPQVNKDGVLALKKSEGQK