AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062067


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062067.t1 MTR_3g053920 50.323 310 75 6 1 261 1 280 2.05e-80 245
MS.gene062067.t1 MTR_2g061500 65.891 129 8 1 1 93 1 129 1.01e-49 162
MS.gene062067.t1 MTR_4g103530 42.079 202 82 4 33 228 9 181 7.67e-44 149
MS.gene062067.t1 MTR_8g463110 57.944 107 43 1 204 308 1 107 2.14e-23 100
MS.gene062067.t1 MTR_7g011710 58.667 75 22 1 55 120 37 111 9.14e-21 87.4
MS.gene062067.t1 MTR_0010s0370 39.560 91 51 2 54 141 88 177 5.59e-16 75.1
MS.gene062067.t1 MTR_0010s0350 39.560 91 51 2 54 141 88 177 5.59e-16 75.1
MS.gene062067.t1 MTR_6g033215 25.466 161 82 2 29 151 122 282 1.01e-12 67.8
MS.gene062067.t1 MTR_6g053230 25.385 130 95 1 24 151 41 170 6.66e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062067.t1 AT2G17920 27.642 123 78 3 38 151 70 190 1.82e-11 64.3

Find 95 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCAACCATATCGATTTC+TGG 0.096492 2.3:+45183585 MS.gene062067:CDS
TCGAGGACAGCAGCGGTTTC+AGG 0.240764 2.3:-45183313 None:intergenic
CAGGTTCAGACTCTAGGTTT+AGG 0.286511 2.3:-45183294 None:intergenic
AGGTTCAGACTCTAGGTTTA+GGG 0.291493 2.3:-45183293 None:intergenic
AGACATACGCTCGCTGAAAT+AGG 0.295896 2.3:-45183383 None:intergenic
CAAGGTCTAGGCAGTTTCTT+AGG 0.304807 2.3:+45183656 MS.gene062067:CDS
ATTTGTTGCTGATGGGGTTA+TGG 0.336196 2.3:+45184398 MS.gene062067:CDS
TGGTTGAGAGGAACAAAGTT+TGG 0.345777 2.3:-45183572 None:intergenic
CAAGTACATGGTCTGCCCTT+TGG 0.347879 2.3:+45183611 MS.gene062067:CDS
TGCTTGCAAAGTTCAACTTC+TGG 0.354310 2.3:+45184206 MS.gene062067:CDS
GGCACTACTGCTGTTCCTGC+TGG 0.381616 2.3:+45184036 MS.gene062067:CDS
AGCAATAACATCTTGTTTCA+TGG 0.382000 2.3:-45184139 None:intergenic
TGCCACCAGCAGCATGGGTT+TGG 0.388495 2.3:-45184017 None:intergenic
GCCTTCGAGATTGAGATGAT+TGG 0.391473 2.3:-45183245 None:intergenic
GGCTGCGACACACATGCTTC+TGG 0.398581 2.3:+45184057 MS.gene062067:CDS
TTTGTTGCTGATGGGGTTAT+GGG 0.399371 2.3:+45184399 MS.gene062067:CDS
CCTAGACCTTGACCTACTTT+CGG 0.406674 2.3:-45183644 None:intergenic
GCTCGCTGAAATAGGCAAAC+TGG 0.409343 2.3:-45183375 None:intergenic
TCTCAACCATATCGATTTCT+GGG 0.415808 2.3:+45183586 MS.gene062067:CDS
GTCCTCGAACACTGTCTCAT+TGG 0.423724 2.3:+45183328 MS.gene062067:CDS
CGGTTTCAGGTTCAGACTCT+AGG 0.429623 2.3:-45183300 None:intergenic
CCTTCGAGATTGAGATGATT+GGG 0.431556 2.3:-45183244 None:intergenic
AACCTTCCTCGGGCAAAGTC+AGG 0.433869 2.3:-45183267 None:intergenic
CTTGGACCCAGAAATCGATA+TGG 0.442182 2.3:-45183592 None:intergenic
CAAAGGGCAGACCATGTACT+TGG 0.443188 2.3:-45183610 None:intergenic
GGTTGAGAGGAACAAAGTTT+GGG 0.448549 2.3:-45183571 None:intergenic
CAAAATCGCCATTGCTTGCA+CGG 0.462126 2.3:-45183781 None:intergenic
TCGGGCCGCCCTCTAGTGCT+TGG 0.462856 2.3:+45184267 MS.gene062067:CDS
GCAACAAATGGTTCTCCATT+CGG 0.472145 2.3:-45184384 None:intergenic
GACACACATGCTTCTGGTAC+GGG 0.473642 2.3:+45184063 MS.gene062067:CDS
GACCTTGACCTACTTTCGGC+TGG 0.478639 2.3:-45183640 None:intergenic
GTTTAGGGTTAAACCTTCCT+CGG 0.485958 2.3:-45183278 None:intergenic
GGATTTATCCAGCCGAAAGT+AGG 0.490851 2.3:+45183632 MS.gene062067:CDS
TTCAGCCTCTAGTTTACTGT+CGG 0.491409 2.3:+45184248 MS.gene062067:CDS
TCATGGCAGTGAGTGGGTGC+TGG 0.494070 2.3:-45184122 None:intergenic
AGGACAATGGCTCGGAATTG+AGG 0.495303 2.3:+45184337 MS.gene062067:CDS
CGACACACATGCTTCTGGTA+CGG 0.505323 2.3:+45184062 MS.gene062067:CDS
AGCAACTTTGATCCGCATAT+AGG 0.507322 2.3:-45183720 None:intergenic
ATGGCTCGGAATTGAGGAAA+AGG 0.507736 2.3:+45184343 MS.gene062067:CDS
GGAGAACCATTTGTTGCTGA+TGG 0.512918 2.3:+45184390 MS.gene062067:CDS
CCGAAAGTAGGTCAAGGTCT+AGG 0.514843 2.3:+45183644 MS.gene062067:CDS
CTTCTGGCTTCCTCCTCTAC+AGG 0.515293 2.3:+45184222 MS.gene062067:CDS
GCATGTGTGTCGCAGCCAGC+AGG 0.518733 2.3:-45184051 None:intergenic
GATTTCTGGGTCCAAGTACA+TGG 0.521574 2.3:+45183599 MS.gene062067:CDS
CGCATGTTTGCCCTTCCGAA+TGG 0.523266 2.3:+45184369 MS.gene062067:CDS
TGGCGTGTCCGTGCAAGCAA+TGG 0.523337 2.3:+45183773 MS.gene062067:CDS
GACCAATGAGACAGTGTTCG+AGG 0.524931 2.3:-45183330 None:intergenic
ACAAAGTTTGGGACGACACC+AGG 0.529423 2.3:-45183560 None:intergenic
GTACTGTTGCAACCAACCGC+TGG 0.529793 2.3:+45183963 MS.gene062067:CDS
CCACGCCAAACCCATGCTGC+TGG 0.534679 2.3:+45184012 MS.gene062067:CDS
GGCCTGACTTTGCCCGAGGA+AGG 0.535725 2.3:+45183265 MS.gene062067:CDS
CAGTAGTGCCACCAGCAGCA+TGG 0.535856 2.3:-45184023 None:intergenic
TGATCCGCATATAGGAGCTA+TGG 0.539079 2.3:-45183712 None:intergenic
TCAGCCTCTAGTTTACTGTC+GGG 0.542327 2.3:+45184249 MS.gene062067:CDS
TTTAGGGTTAAACCTTCCTC+GGG 0.546216 2.3:-45183277 None:intergenic
TCAGTCACAAACGGAACAGC+AGG 0.551036 2.3:-45184294 None:intergenic
GTTTGTGACTGAAAATAATG+AGG 0.557189 2.3:+45184305 MS.gene062067:CDS
ATAACCCCATCAGCAACAAA+TGG 0.558809 2.3:-45184396 None:intergenic
GAGAACCATTTGTTGCTGAT+GGG 0.561222 2.3:+45184391 MS.gene062067:CDS
AGAGGCTGAAGTTCCTGTAG+AGG 0.561383 2.3:-45184235 None:intergenic
CGCCAAACCCATGCTGCTGG+TGG 0.562675 2.3:+45184015 MS.gene062067:CDS
CTGTGCCTCTGAAGAAAGCA+TGG 0.565773 2.3:+45183753 MS.gene062067:CDS
GGCTGAAGTTCCTGTAGAGG+AGG 0.569105 2.3:-45184232 None:intergenic
AAATAATGAGGAAGTGAATG+AGG 0.570022 2.3:+45184317 MS.gene062067:CDS
AAGCATACGATCATTAAAAG+AGG 0.570232 2.3:-45184094 None:intergenic
ACACGCCATGCTTTCTTCAG+AGG 0.577762 2.3:-45183758 None:intergenic
CCAGCAGCATGGGTTTGGCG+TGG 0.577855 2.3:-45184012 None:intergenic
CTTGTTTCATGGCAGTGAGT+GGG 0.583778 2.3:-45184128 None:intergenic
CAAATGGTTCTCCATTCGGA+AGG 0.583980 2.3:-45184380 None:intergenic
GCGTGGCACAGATACGTGAA+TGG 0.585331 2.3:-45183995 None:intergenic
AGTAGTGCCACCAGCAGCAT+GGG 0.587450 2.3:-45184022 None:intergenic
TTCGGCTGGATAAATCCAAA+GGG 0.589026 2.3:-45183626 None:intergenic
TTTCGGCTGGATAAATCCAA+AGG 0.590698 2.3:-45183627 None:intergenic
TGAAAATTGTCATACAACCA+TGG 0.596313 2.3:-45183515 None:intergenic
CCCAATCATCTCAATCTCGA+AGG 0.597021 2.3:+45183244 MS.gene062067:CDS
AGAACCATTTGTTGCTGATG+GGG 0.610495 2.3:+45184392 MS.gene062067:CDS
GCAGGTAAACCAAGCACTAG+AGG 0.610795 2.3:-45184276 None:intergenic
AGTGAATGAGGACAATGGCT+CGG 0.613459 2.3:+45184329 MS.gene062067:CDS
TCTTGTTTCATGGCAGTGAG+TGG 0.614201 2.3:-45184129 None:intergenic
TGGATCTTGAAGCCAGCGGT+TGG 0.622425 2.3:-45183975 None:intergenic
TTTGCAAGCAGAATTAGAGC+CGG 0.626746 2.3:-45184193 None:intergenic
GTCATGGATCGAATCTCACC+TGG 0.627964 2.3:+45183542 MS.gene062067:CDS
GGCAGTGAGTGGGTGCTGGA+AGG 0.628226 2.3:-45184118 None:intergenic
CAGGTAAACCAAGCACTAGA+GGG 0.633650 2.3:-45184275 None:intergenic
ATCCAGCCGAAAGTAGGTCA+AGG 0.636561 2.3:+45183638 MS.gene062067:CDS
AGGAGCTATGGATTGAGTTG+CGG 0.639724 2.3:-45183700 None:intergenic
CAGAAATCGATATGGTTGAG+AGG 0.642672 2.3:-45183584 None:intergenic
AAATGGTTCTCCATTCGGAA+GGG 0.643800 2.3:-45184379 None:intergenic
CGAAGGCCTGACTTTGCCCG+AGG 0.647759 2.3:+45183261 MS.gene062067:CDS
CAATCCATAGCTCCTATATG+CGG 0.665022 2.3:+45183708 MS.gene062067:CDS
GAGGAAGTGAATGAGGACAA+TGG 0.671664 2.3:+45184324 MS.gene062067:CDS
GCGGCCCGACAGTAAACTAG+AGG 0.672690 2.3:-45184253 None:intergenic
GTAAACCAAGCACTAGAGGG+CGG 0.685839 2.3:-45184272 None:intergenic
ACAGTGTTCGAGGACAGCAG+CGG 0.708320 2.3:-45183320 None:intergenic
TGAATGGATCTTGAAGCCAG+CGG 0.745695 2.3:-45183979 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAATATGAGAAATT+GGG + chr2.3:45183812-45183831 MS.gene062067:intron 10.0%
!!! TAATTTTAAATATGAGAAAT+TGG + chr2.3:45183811-45183830 MS.gene062067:intron 10.0%
!! TCATTATTTTCAGTCACAAA+CGG - chr2.3:45184306-45184325 None:intergenic 25.0%
!! TGACAATTTTCATATTGTCA+TGG + chr2.3:45183526-45183545 MS.gene062067:CDS 25.0%
!!! ACATCTTTTTCATCAAACAA+AGG - chr2.3:45184489-45184508 None:intergenic 25.0%
AAATAATGAGGAAGTGAATG+AGG + chr2.3:45184317-45184336 MS.gene062067:CDS 30.0%
AAGCATACGATCATTAAAAG+AGG - chr2.3:45184097-45184116 None:intergenic 30.0%
ATAGGAACAAATGTTAGTCA+TGG + chr2.3:45184432-45184451 MS.gene062067:intron 30.0%
GTTATGGGAAACAATGTAAT+AGG + chr2.3:45184414-45184433 MS.gene062067:intron 30.0%
GTTTGTGACTGAAAATAATG+AGG + chr2.3:45184305-45184324 MS.gene062067:CDS 30.0%
TAGGAACAAATGTTAGTCAT+GGG + chr2.3:45184433-45184452 MS.gene062067:intron 30.0%
TGAAAATTGTCATACAACCA+TGG - chr2.3:45183518-45183537 None:intergenic 30.0%
TTTGAATTAGAAGCTGATGA+TGG + chr2.3:45183893-45183912 MS.gene062067:intron 30.0%
! AGCAATAACATCTTGTTTCA+TGG - chr2.3:45184142-45184161 None:intergenic 30.0%
!! TGATGATGGAATTCGTAATT+GGG + chr2.3:45183907-45183926 MS.gene062067:intron 30.0%
!!! AATTGGGTGTTTTTTGTTAC+AGG + chr2.3:45183828-45183847 MS.gene062067:intron 30.0%
AGGAACAAATGTTAGTCATG+GGG + chr2.3:45184434-45184453 MS.gene062067:intron 35.0%
CTTCTAATTCAAACAACTCC+GGG - chr2.3:45183886-45183905 None:intergenic 35.0%
GCTTCTAATTCAAACAACTC+CGG - chr2.3:45183887-45183906 None:intergenic 35.0%
TTTGTTCCAATTCCATCACA+AGG + chr2.3:45183463-45183482 MS.gene062067:intron 35.0%
!! CTGATGATGGAATTCGTAAT+TGG + chr2.3:45183906-45183925 MS.gene062067:intron 35.0%
!! GATGATGGAATTCGTAATTG+GGG + chr2.3:45183908-45183927 MS.gene062067:intron 35.0%
!! TCTCAACCATATCGATTTCT+GGG + chr2.3:45183586-45183605 MS.gene062067:CDS 35.0%
AAATGGTTCTCCATTCGGAA+GGG - chr2.3:45184382-45184401 None:intergenic 40.0%
AACAAATGTTAGTCATGGGG+AGG + chr2.3:45184437-45184456 MS.gene062067:intron 40.0%
AATGCAGCGCATGCTAAAAA+TGG + chr2.3:45184168-45184187 MS.gene062067:CDS 40.0%
AGCAACTTTGATCCGCATAT+AGG - chr2.3:45183723-45183742 None:intergenic 40.0%
AGGTTCAGACTCTAGGTTTA+GGG - chr2.3:45183296-45183315 None:intergenic 40.0%
ATAACCCCATCAGCAACAAA+TGG - chr2.3:45184399-45184418 None:intergenic 40.0%
CAATCCATAGCTCCTATATG+CGG + chr2.3:45183708-45183727 MS.gene062067:CDS 40.0%
CAGAAATCGATATGGTTGAG+AGG - chr2.3:45183587-45183606 None:intergenic 40.0%
CCTTCGAGATTGAGATGATT+GGG - chr2.3:45183247-45183266 None:intergenic 40.0%
GCAACAAATGGTTCTCCATT+CGG - chr2.3:45184387-45184406 None:intergenic 40.0%
GGTTGAGAGGAACAAAGTTT+GGG - chr2.3:45183574-45183593 None:intergenic 40.0%
GTACCAATCCTGTTTGTAAC+CGG - chr2.3:45183947-45183966 None:intergenic 40.0%
TGCTTGCAAAGTTCAACTTC+TGG + chr2.3:45184206-45184225 MS.gene062067:CDS 40.0%
TGGTTGAGAGGAACAAAGTT+TGG - chr2.3:45183575-45183594 None:intergenic 40.0%
TGTTACAGGTGTGGTTTACT+CGG + chr2.3:45183842-45183861 MS.gene062067:intron 40.0%
TTCGGCTGGATAAATCCAAA+GGG - chr2.3:45183629-45183648 None:intergenic 40.0%
TTTCGGCTGGATAAATCCAA+AGG - chr2.3:45183630-45183649 None:intergenic 40.0%
TTTGCAAGCAGAATTAGAGC+CGG - chr2.3:45184196-45184215 None:intergenic 40.0%
TTTGTTGCTGATGGGGTTAT+GGG + chr2.3:45184399-45184418 MS.gene062067:CDS 40.0%
! AGAACCATTTGTTGCTGATG+GGG + chr2.3:45184392-45184411 MS.gene062067:CDS 40.0%
! ATTTGTTGCTGATGGGGTTA+TGG + chr2.3:45184398-45184417 MS.gene062067:CDS 40.0%
! CATCAACCTTGTGATGGAAT+TGG - chr2.3:45183472-45183491 None:intergenic 40.0%
! GAGAACCATTTGTTGCTGAT+GGG + chr2.3:45184391-45184410 MS.gene062067:CDS 40.0%
! GCGGTCAACATAAGCTTTTA+GGG - chr2.3:45183684-45183703 None:intergenic 40.0%
! GTTTAGGGTTAAACCTTCCT+CGG - chr2.3:45183281-45183300 None:intergenic 40.0%
! TGCGGTCAACATAAGCTTTT+AGG - chr2.3:45183685-45183704 None:intergenic 40.0%
! TTCAGCCTCTAGTTTACTGT+CGG + chr2.3:45184248-45184267 MS.gene062067:CDS 40.0%
! TTTAGCATGCGCTGCATTTT+GGG - chr2.3:45184166-45184185 None:intergenic 40.0%
! TTTAGGGTTAAACCTTCCTC+GGG - chr2.3:45183280-45183299 None:intergenic 40.0%
! TTTTAGCATGCGCTGCATTT+TGG - chr2.3:45184167-45184186 None:intergenic 40.0%
!! ATGGACCTTCCTCTAAAACA+GGG - chr2.3:45183499-45183518 None:intergenic 40.0%
!! CTCTCAACCATATCGATTTC+TGG + chr2.3:45183585-45183604 MS.gene062067:CDS 40.0%
!! TGATGCAAACCCTGTTTTAG+AGG + chr2.3:45183487-45183506 MS.gene062067:intron 40.0%
!!! GGTGTTTTTTGTTACAGGTG+TGG + chr2.3:45183833-45183852 MS.gene062067:intron 40.0%
AAGCCGGTTACAAACAGGAT+TGG + chr2.3:45183941-45183960 MS.gene062067:intron 45.0%
ACATACCGACAAAGTTTGCC+CGG + chr2.3:45183865-45183884 MS.gene062067:intron 45.0%
ACCTTAAGCCGGTTACAAAC+AGG + chr2.3:45183936-45183955 MS.gene062067:intron 45.0%
AGACATACGCTCGCTGAAAT+AGG - chr2.3:45183386-45183405 None:intergenic 45.0%
AGTGAATGAGGACAATGGCT+CGG + chr2.3:45184329-45184348 MS.gene062067:CDS 45.0%
CAAAATCGCCATTGCTTGCA+CGG - chr2.3:45183784-45183803 None:intergenic 45.0%
CAAATGGTTCTCCATTCGGA+AGG - chr2.3:45184383-45184402 None:intergenic 45.0%
CAAGGTCTAGGCAGTTTCTT+AGG + chr2.3:45183656-45183675 MS.gene062067:CDS 45.0%
CAGGTAAACCAAGCACTAGA+GGG - chr2.3:45184278-45184297 None:intergenic 45.0%
CAGGTTCAGACTCTAGGTTT+AGG - chr2.3:45183297-45183316 None:intergenic 45.0%
CCCAATCATCTCAATCTCGA+AGG + chr2.3:45183244-45183263 MS.gene062067:CDS 45.0%
CCTAGACCTTGACCTACTTT+CGG - chr2.3:45183647-45183666 None:intergenic 45.0%
CTTGGACCCAGAAATCGATA+TGG - chr2.3:45183595-45183614 None:intergenic 45.0%
CTTGTTTCATGGCAGTGAGT+GGG - chr2.3:45184131-45184150 None:intergenic 45.0%
GAGGAAGTGAATGAGGACAA+TGG + chr2.3:45184324-45184343 MS.gene062067:CDS 45.0%
GCCTTCGAGATTGAGATGAT+TGG - chr2.3:45183248-45183267 None:intergenic 45.0%
GCGCATGCTAAAAATGGTAC+CGG + chr2.3:45184174-45184193 MS.gene062067:CDS 45.0%
GGATTTATCCAGCCGAAAGT+AGG + chr2.3:45183632-45183651 MS.gene062067:CDS 45.0%
GGTTTGCATCAACCTTGTGA+TGG - chr2.3:45183478-45183497 None:intergenic 45.0%
TAATTGTAACCCCGTTTGCC+TGG - chr2.3:45183421-45183440 None:intergenic 45.0%
TGAATGGATCTTGAAGCCAG+CGG - chr2.3:45183982-45184001 None:intergenic 45.0%
TGATCCGCATATAGGAGCTA+TGG - chr2.3:45183715-45183734 None:intergenic 45.0%
! AGGAGCTATGGATTGAGTTG+CGG - chr2.3:45183703-45183722 None:intergenic 45.0%
! ATGGCTCGGAATTGAGGAAA+AGG + chr2.3:45184343-45184362 MS.gene062067:CDS 45.0%
! GATTTCTGGGTCCAAGTACA+TGG + chr2.3:45183599-45183618 MS.gene062067:CDS 45.0%
! GGAGAACCATTTGTTGCTGA+TGG + chr2.3:45184390-45184409 MS.gene062067:CDS 45.0%
! TCAGCCTCTAGTTTACTGTC+GGG + chr2.3:45184249-45184268 MS.gene062067:CDS 45.0%
! TCCTGTTTGTAACCGGCTTA+AGG - chr2.3:45183940-45183959 None:intergenic 45.0%
! TCTTGTTTCATGGCAGTGAG+TGG - chr2.3:45184132-45184151 None:intergenic 45.0%
!! CATGGACCTTCCTCTAAAAC+AGG - chr2.3:45183500-45183519 None:intergenic 45.0%
!!! CTGTTTTAGAGGAAGGTCCA+TGG + chr2.3:45183498-45183517 MS.gene062067:intron 45.0%
!!! GCAAACCCTGTTTTAGAGGA+AGG + chr2.3:45183491-45183510 MS.gene062067:intron 45.0%
ACACGCCATGCTTTCTTCAG+AGG - chr2.3:45183761-45183780 None:intergenic 50.0%
AGAGGCTGAAGTTCCTGTAG+AGG - chr2.3:45184238-45184257 None:intergenic 50.0%
ATCCAGCCGAAAGTAGGTCA+AGG + chr2.3:45183638-45183657 MS.gene062067:CDS 50.0%
ATGTCTCGTCCTTGGAAACC+AGG + chr2.3:45183400-45183419 MS.gene062067:intron 50.0%
CAAAGGGCAGACCATGTACT+TGG - chr2.3:45183613-45183632 None:intergenic 50.0%
CAACTCCGGGCAAACTTTGT+CGG - chr2.3:45183873-45183892 None:intergenic 50.0%
CAAGTACATGGTCTGCCCTT+TGG + chr2.3:45183611-45183630 MS.gene062067:CDS 50.0%
CCGAAAGTAGGTCAAGGTCT+AGG + chr2.3:45183644-45183663 MS.gene062067:CDS 50.0%
CGACACACATGCTTCTGGTA+CGG + chr2.3:45184062-45184081 MS.gene062067:CDS 50.0%
GACACACATGCTTCTGGTAC+GGG + chr2.3:45184063-45184082 MS.gene062067:CDS 50.0%
GACCAATGAGACAGTGTTCG+AGG - chr2.3:45183333-45183352 None:intergenic 50.0%
GCAGGTAAACCAAGCACTAG+AGG - chr2.3:45184279-45184298 None:intergenic 50.0%
GCTCGCTGAAATAGGCAAAC+TGG - chr2.3:45183378-45183397 None:intergenic 50.0%
GTAAACCAAGCACTAGAGGG+CGG - chr2.3:45184275-45184294 None:intergenic 50.0%
GTCATGGATCGAATCTCACC+TGG + chr2.3:45183542-45183561 MS.gene062067:CDS 50.0%
GTCCTCGAACACTGTCTCAT+TGG + chr2.3:45183328-45183347 MS.gene062067:CDS 50.0%
GTCCTTGGAAACCAGGCAAA+CGG + chr2.3:45183407-45183426 MS.gene062067:intron 50.0%
TCAGTCACAAACGGAACAGC+AGG - chr2.3:45184297-45184316 None:intergenic 50.0%
TCCTTGGAAACCAGGCAAAC+GGG + chr2.3:45183408-45183427 MS.gene062067:intron 50.0%
! ACAAAGTTTGGGACGACACC+AGG - chr2.3:45183563-45183582 None:intergenic 50.0%
! AGGACAATGGCTCGGAATTG+AGG + chr2.3:45184337-45184356 MS.gene062067:CDS 50.0%
! CTGTGCCTCTGAAGAAAGCA+TGG + chr2.3:45183753-45183772 MS.gene062067:CDS 50.0%
!! CGGTTTCAGGTTCAGACTCT+AGG - chr2.3:45183303-45183322 None:intergenic 50.0%
AACCTTCCTCGGGCAAAGTC+AGG - chr2.3:45183270-45183289 None:intergenic 55.0%
ACAGTGTTCGAGGACAGCAG+CGG - chr2.3:45183323-45183342 None:intergenic 55.0%
AGTAGTGCCACCAGCAGCAT+GGG - chr2.3:45184025-45184044 None:intergenic 55.0%
CCTTGGAAACCAGGCAAACG+GGG + chr2.3:45183409-45183428 MS.gene062067:intron 55.0%
CGCATGTTTGCCCTTCCGAA+TGG + chr2.3:45184369-45184388 MS.gene062067:CDS 55.0%
GACCTTGACCTACTTTCGGC+TGG - chr2.3:45183643-45183662 None:intergenic 55.0%
GCGTGGCACAGATACGTGAA+TGG - chr2.3:45183998-45184017 None:intergenic 55.0%
GGCTGAAGTTCCTGTAGAGG+AGG - chr2.3:45184235-45184254 None:intergenic 55.0%
GTACTGTTGCAACCAACCGC+TGG + chr2.3:45183963-45183982 MS.gene062067:CDS 55.0%
TGGATCTTGAAGCCAGCGGT+TGG - chr2.3:45183978-45183997 None:intergenic 55.0%
TTGGGGAGCTGACCTTAAGC+CGG + chr2.3:45183925-45183944 MS.gene062067:intron 55.0%
!! CTTCTGGCTTCCTCCTCTAC+AGG + chr2.3:45184222-45184241 MS.gene062067:CDS 55.0%
CAGTAGTGCCACCAGCAGCA+TGG - chr2.3:45184026-45184045 None:intergenic 60.0%
CCCCGTTTGCCTGGTTTCCA+AGG - chr2.3:45183412-45183431 None:intergenic 60.0%
GCGAGCGTATGTCTCGTCCT+TGG + chr2.3:45183392-45183411 MS.gene062067:intron 60.0%
GCGGCCCGACAGTAAACTAG+AGG - chr2.3:45184256-45184275 None:intergenic 60.0%
GGCACTACTGCTGTTCCTGC+TGG + chr2.3:45184036-45184055 MS.gene062067:CDS 60.0%
GGCTGCGACACACATGCTTC+TGG + chr2.3:45184057-45184076 MS.gene062067:CDS 60.0%
TCATGGCAGTGAGTGGGTGC+TGG - chr2.3:45184125-45184144 None:intergenic 60.0%
TCGAGGACAGCAGCGGTTTC+AGG - chr2.3:45183316-45183335 None:intergenic 60.0%
TGCCACCAGCAGCATGGGTT+TGG - chr2.3:45184020-45184039 None:intergenic 60.0%
TGGCGTGTCCGTGCAAGCAA+TGG + chr2.3:45183773-45183792 MS.gene062067:CDS 60.0%
CCACGCCAAACCCATGCTGC+TGG + chr2.3:45184012-45184031 MS.gene062067:CDS 65.0%
CCAGCAGCATGGGTTTGGCG+TGG - chr2.3:45184015-45184034 None:intergenic 65.0%
CGAAGGCCTGACTTTGCCCG+AGG + chr2.3:45183261-45183280 MS.gene062067:CDS 65.0%
CGCCAAACCCATGCTGCTGG+TGG + chr2.3:45184015-45184034 MS.gene062067:CDS 65.0%
GCATGTGTGTCGCAGCCAGC+AGG - chr2.3:45184054-45184073 None:intergenic 65.0%
GGCCTGACTTTGCCCGAGGA+AGG + chr2.3:45183265-45183284 MS.gene062067:CDS 65.0%
!! GGCAGTGAGTGGGTGCTGGA+AGG - chr2.3:45184121-45184140 None:intergenic 65.0%
TCGGGCCGCCCTCTAGTGCT+TGG + chr2.3:45184267-45184286 MS.gene062067:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 45183238 45184510 45183238 ID=MS.gene062067
chr2.3 mRNA 45183238 45184510 45183238 ID=MS.gene062067.t1;Parent=MS.gene062067
chr2.3 exon 45183238 45183397 45183238 ID=MS.gene062067.t1.exon1;Parent=MS.gene062067.t1
chr2.3 CDS 45183238 45183397 45183238 ID=cds.MS.gene062067.t1;Parent=MS.gene062067.t1
chr2.3 exon 45183507 45183802 45183507 ID=MS.gene062067.t1.exon2;Parent=MS.gene062067.t1
chr2.3 CDS 45183507 45183802 45183507 ID=cds.MS.gene062067.t1;Parent=MS.gene062067.t1
chr2.3 exon 45183958 45184428 45183958 ID=MS.gene062067.t1.exon3;Parent=MS.gene062067.t1
chr2.3 CDS 45183958 45184428 45183958 ID=cds.MS.gene062067.t1;Parent=MS.gene062067.t1
chr2.3 exon 45184505 45184510 45184505 ID=MS.gene062067.t1.exon4;Parent=MS.gene062067.t1
chr2.3 CDS 45184505 45184510 45184505 ID=cds.MS.gene062067.t1;Parent=MS.gene062067.t1
Gene Sequence

>MS.gene062067

ATGGATCCCAATCATCTCAATCTCGAAGGCCTGACTTTGCCCGAGGAAGGTTTAACCCTAAACCTAGAGTCTGAACCTGAAACCGCTGCTGTCCTCGAACACTGTCTCATTGGTCGTGTGCTTGCTGATCGTGAAATCCAGTTTGCCTATTTCAGCGAGCGTATGTCTCGTCCTTGGAAACCAGGCAAACGGGGTTACAATTACTAAGTCTGTGAATGATCGCTATTTGTTCCAATTCCATCACAAGGTTGATGCAAACCCTGTTTTAGAGGAAGGTCCATGGTTGTATGACAATTTTCATATTGTCATGGATCGAATCTCACCTGGTGTCGTCCCAAACTTTGTTCCTCTCAACCATATCGATTTCTGGGTCCAAGTACATGGTCTGCCCTTTGGATTTATCCAGCCGAAAGTAGGTCAAGGTCTAGGCAGTTTCTTAGGAACCCTAAAAGCTTATGTTGACCGCAACTCAATCCATAGCTCCTATATGCGGATCAAAGTTGCTATTGATGTCACTGTGCCTCTGAAGAAAGCATGGCGTGTCCGTGCAAGCAATGGCGATTTTGTTACTATTAATTTTAAATATGAGAAATTGGGTGTTTTTTGTTACAGGTGTGGTTTACTCGGACATACCGACAAAGTTTGCCCGGAGTTGTTTGAATTAGAAGCTGATGATGGAATTCGTAATTGGGGAGCTGACCTTAAGCCGGTTACAAACAGGATTGGTACTGTTGCAACCAACCGCTGGCTTCAAGATCCATTCACGTATCTGTGCCACGCCAAACCCATGCTGCTGGTGGCACTACTGCTGTTCCTGCTGGCTGCGACACACATGCTTCTGGTACGGGAACTCTGACCTCTTTTAATGATCGTATGCTTGCCTTCCAGCACCCACTCACTGCCATGAAACAAGATGTTATTGCTGCCCAAAATGCAGCGCATGCTAAAAATGGTACCGGCTCTAATTCTGCTTGCAAAGTTCAACTTCTGGCTTCCTCCTCTACAGGAACTTCAGCCTCTAGTTTACTGTCGGGCCGCCCTCTAGTGCTTGGTTTACCTGCTGTTCCGTTTGTGACTGAAAATAATGAGGAAGTGAATGAGGACAATGGCTCGGAATTGAGGAAAAGGAAACGCATGTTTGCCCTTCCGAATGGAGAACCATTTGTTGCTGATGGGGTTATGGGAAACAATGTAATAGGAACAAATGTTAGTCATGGGGAGGATGCTGAAATGAATATATTCTCTAATCCTTTGTTTGATGAAAAAGATGTAA

Protein sequence

>MS.gene062067.t1

MDPNHLNLEGLTLPEEGLTLNLESEPETAAVLEHCLIGRVLADREIQFAYFSEQEGPWLYDNFHIVMDRISPGVVPNFVPLNHIDFWVQVHGLPFGFIQPKVGQGLGSFLGTLKAYVDRNSIHSSYMRIKVAIDVTVPLKKAWRVRASNGDFDWYCCNQPLASRSIHVSVPRQTHAAGGTTAVPAGCDTHASGTGTLTSFNDRMLAFQHPLTAMKQDVIAAQNAAHAKNGTGSNSACKVQLLASSSTGTSASSLLSGRPLVLGLPAVPFVTENNEEVNEDNGSELRKRKRMFALPNGEPFVADGVMGNNM