Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062067.t1 | AES70414.1 | 50.3 | 310 | 75 | 6 | 1 | 261 | 1 | 280 | 5.00E-63 | 251.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062067.t1 | G7J017 | 50.3 | 310 | 75 | 6 | 1 | 261 | 1 | 280 | 3.6e-63 | 251.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062067.t1 | MTR_3g053920 | 50.323 | 310 | 75 | 6 | 1 | 261 | 1 | 280 | 2.05e-80 | 245 |
MS.gene062067.t1 | MTR_2g061500 | 65.891 | 129 | 8 | 1 | 1 | 93 | 1 | 129 | 1.01e-49 | 162 |
MS.gene062067.t1 | MTR_4g103530 | 42.079 | 202 | 82 | 4 | 33 | 228 | 9 | 181 | 7.67e-44 | 149 |
MS.gene062067.t1 | MTR_8g463110 | 57.944 | 107 | 43 | 1 | 204 | 308 | 1 | 107 | 2.14e-23 | 100 |
MS.gene062067.t1 | MTR_7g011710 | 58.667 | 75 | 22 | 1 | 55 | 120 | 37 | 111 | 9.14e-21 | 87.4 |
MS.gene062067.t1 | MTR_0010s0370 | 39.560 | 91 | 51 | 2 | 54 | 141 | 88 | 177 | 5.59e-16 | 75.1 |
MS.gene062067.t1 | MTR_0010s0350 | 39.560 | 91 | 51 | 2 | 54 | 141 | 88 | 177 | 5.59e-16 | 75.1 |
MS.gene062067.t1 | MTR_6g033215 | 25.466 | 161 | 82 | 2 | 29 | 151 | 122 | 282 | 1.01e-12 | 67.8 |
MS.gene062067.t1 | MTR_6g053230 | 25.385 | 130 | 95 | 1 | 24 | 151 | 41 | 170 | 6.66e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062067.t1 | AT2G17920 | 27.642 | 123 | 78 | 3 | 38 | 151 | 70 | 190 | 1.82e-11 | 64.3 |
Find 95 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTCAACCATATCGATTTC+TGG | 0.096492 | 2.3:+45183585 | MS.gene062067:CDS |
TCGAGGACAGCAGCGGTTTC+AGG | 0.240764 | 2.3:-45183313 | None:intergenic |
CAGGTTCAGACTCTAGGTTT+AGG | 0.286511 | 2.3:-45183294 | None:intergenic |
AGGTTCAGACTCTAGGTTTA+GGG | 0.291493 | 2.3:-45183293 | None:intergenic |
AGACATACGCTCGCTGAAAT+AGG | 0.295896 | 2.3:-45183383 | None:intergenic |
CAAGGTCTAGGCAGTTTCTT+AGG | 0.304807 | 2.3:+45183656 | MS.gene062067:CDS |
ATTTGTTGCTGATGGGGTTA+TGG | 0.336196 | 2.3:+45184398 | MS.gene062067:CDS |
TGGTTGAGAGGAACAAAGTT+TGG | 0.345777 | 2.3:-45183572 | None:intergenic |
CAAGTACATGGTCTGCCCTT+TGG | 0.347879 | 2.3:+45183611 | MS.gene062067:CDS |
TGCTTGCAAAGTTCAACTTC+TGG | 0.354310 | 2.3:+45184206 | MS.gene062067:CDS |
GGCACTACTGCTGTTCCTGC+TGG | 0.381616 | 2.3:+45184036 | MS.gene062067:CDS |
AGCAATAACATCTTGTTTCA+TGG | 0.382000 | 2.3:-45184139 | None:intergenic |
TGCCACCAGCAGCATGGGTT+TGG | 0.388495 | 2.3:-45184017 | None:intergenic |
GCCTTCGAGATTGAGATGAT+TGG | 0.391473 | 2.3:-45183245 | None:intergenic |
GGCTGCGACACACATGCTTC+TGG | 0.398581 | 2.3:+45184057 | MS.gene062067:CDS |
TTTGTTGCTGATGGGGTTAT+GGG | 0.399371 | 2.3:+45184399 | MS.gene062067:CDS |
CCTAGACCTTGACCTACTTT+CGG | 0.406674 | 2.3:-45183644 | None:intergenic |
GCTCGCTGAAATAGGCAAAC+TGG | 0.409343 | 2.3:-45183375 | None:intergenic |
TCTCAACCATATCGATTTCT+GGG | 0.415808 | 2.3:+45183586 | MS.gene062067:CDS |
GTCCTCGAACACTGTCTCAT+TGG | 0.423724 | 2.3:+45183328 | MS.gene062067:CDS |
CGGTTTCAGGTTCAGACTCT+AGG | 0.429623 | 2.3:-45183300 | None:intergenic |
CCTTCGAGATTGAGATGATT+GGG | 0.431556 | 2.3:-45183244 | None:intergenic |
AACCTTCCTCGGGCAAAGTC+AGG | 0.433869 | 2.3:-45183267 | None:intergenic |
CTTGGACCCAGAAATCGATA+TGG | 0.442182 | 2.3:-45183592 | None:intergenic |
CAAAGGGCAGACCATGTACT+TGG | 0.443188 | 2.3:-45183610 | None:intergenic |
GGTTGAGAGGAACAAAGTTT+GGG | 0.448549 | 2.3:-45183571 | None:intergenic |
CAAAATCGCCATTGCTTGCA+CGG | 0.462126 | 2.3:-45183781 | None:intergenic |
TCGGGCCGCCCTCTAGTGCT+TGG | 0.462856 | 2.3:+45184267 | MS.gene062067:CDS |
GCAACAAATGGTTCTCCATT+CGG | 0.472145 | 2.3:-45184384 | None:intergenic |
GACACACATGCTTCTGGTAC+GGG | 0.473642 | 2.3:+45184063 | MS.gene062067:CDS |
GACCTTGACCTACTTTCGGC+TGG | 0.478639 | 2.3:-45183640 | None:intergenic |
GTTTAGGGTTAAACCTTCCT+CGG | 0.485958 | 2.3:-45183278 | None:intergenic |
GGATTTATCCAGCCGAAAGT+AGG | 0.490851 | 2.3:+45183632 | MS.gene062067:CDS |
TTCAGCCTCTAGTTTACTGT+CGG | 0.491409 | 2.3:+45184248 | MS.gene062067:CDS |
TCATGGCAGTGAGTGGGTGC+TGG | 0.494070 | 2.3:-45184122 | None:intergenic |
AGGACAATGGCTCGGAATTG+AGG | 0.495303 | 2.3:+45184337 | MS.gene062067:CDS |
CGACACACATGCTTCTGGTA+CGG | 0.505323 | 2.3:+45184062 | MS.gene062067:CDS |
AGCAACTTTGATCCGCATAT+AGG | 0.507322 | 2.3:-45183720 | None:intergenic |
ATGGCTCGGAATTGAGGAAA+AGG | 0.507736 | 2.3:+45184343 | MS.gene062067:CDS |
GGAGAACCATTTGTTGCTGA+TGG | 0.512918 | 2.3:+45184390 | MS.gene062067:CDS |
CCGAAAGTAGGTCAAGGTCT+AGG | 0.514843 | 2.3:+45183644 | MS.gene062067:CDS |
CTTCTGGCTTCCTCCTCTAC+AGG | 0.515293 | 2.3:+45184222 | MS.gene062067:CDS |
GCATGTGTGTCGCAGCCAGC+AGG | 0.518733 | 2.3:-45184051 | None:intergenic |
GATTTCTGGGTCCAAGTACA+TGG | 0.521574 | 2.3:+45183599 | MS.gene062067:CDS |
CGCATGTTTGCCCTTCCGAA+TGG | 0.523266 | 2.3:+45184369 | MS.gene062067:CDS |
TGGCGTGTCCGTGCAAGCAA+TGG | 0.523337 | 2.3:+45183773 | MS.gene062067:CDS |
GACCAATGAGACAGTGTTCG+AGG | 0.524931 | 2.3:-45183330 | None:intergenic |
ACAAAGTTTGGGACGACACC+AGG | 0.529423 | 2.3:-45183560 | None:intergenic |
GTACTGTTGCAACCAACCGC+TGG | 0.529793 | 2.3:+45183963 | MS.gene062067:CDS |
CCACGCCAAACCCATGCTGC+TGG | 0.534679 | 2.3:+45184012 | MS.gene062067:CDS |
GGCCTGACTTTGCCCGAGGA+AGG | 0.535725 | 2.3:+45183265 | MS.gene062067:CDS |
CAGTAGTGCCACCAGCAGCA+TGG | 0.535856 | 2.3:-45184023 | None:intergenic |
TGATCCGCATATAGGAGCTA+TGG | 0.539079 | 2.3:-45183712 | None:intergenic |
TCAGCCTCTAGTTTACTGTC+GGG | 0.542327 | 2.3:+45184249 | MS.gene062067:CDS |
TTTAGGGTTAAACCTTCCTC+GGG | 0.546216 | 2.3:-45183277 | None:intergenic |
TCAGTCACAAACGGAACAGC+AGG | 0.551036 | 2.3:-45184294 | None:intergenic |
GTTTGTGACTGAAAATAATG+AGG | 0.557189 | 2.3:+45184305 | MS.gene062067:CDS |
ATAACCCCATCAGCAACAAA+TGG | 0.558809 | 2.3:-45184396 | None:intergenic |
GAGAACCATTTGTTGCTGAT+GGG | 0.561222 | 2.3:+45184391 | MS.gene062067:CDS |
AGAGGCTGAAGTTCCTGTAG+AGG | 0.561383 | 2.3:-45184235 | None:intergenic |
CGCCAAACCCATGCTGCTGG+TGG | 0.562675 | 2.3:+45184015 | MS.gene062067:CDS |
CTGTGCCTCTGAAGAAAGCA+TGG | 0.565773 | 2.3:+45183753 | MS.gene062067:CDS |
GGCTGAAGTTCCTGTAGAGG+AGG | 0.569105 | 2.3:-45184232 | None:intergenic |
AAATAATGAGGAAGTGAATG+AGG | 0.570022 | 2.3:+45184317 | MS.gene062067:CDS |
AAGCATACGATCATTAAAAG+AGG | 0.570232 | 2.3:-45184094 | None:intergenic |
ACACGCCATGCTTTCTTCAG+AGG | 0.577762 | 2.3:-45183758 | None:intergenic |
CCAGCAGCATGGGTTTGGCG+TGG | 0.577855 | 2.3:-45184012 | None:intergenic |
CTTGTTTCATGGCAGTGAGT+GGG | 0.583778 | 2.3:-45184128 | None:intergenic |
CAAATGGTTCTCCATTCGGA+AGG | 0.583980 | 2.3:-45184380 | None:intergenic |
GCGTGGCACAGATACGTGAA+TGG | 0.585331 | 2.3:-45183995 | None:intergenic |
AGTAGTGCCACCAGCAGCAT+GGG | 0.587450 | 2.3:-45184022 | None:intergenic |
TTCGGCTGGATAAATCCAAA+GGG | 0.589026 | 2.3:-45183626 | None:intergenic |
TTTCGGCTGGATAAATCCAA+AGG | 0.590698 | 2.3:-45183627 | None:intergenic |
TGAAAATTGTCATACAACCA+TGG | 0.596313 | 2.3:-45183515 | None:intergenic |
CCCAATCATCTCAATCTCGA+AGG | 0.597021 | 2.3:+45183244 | MS.gene062067:CDS |
AGAACCATTTGTTGCTGATG+GGG | 0.610495 | 2.3:+45184392 | MS.gene062067:CDS |
GCAGGTAAACCAAGCACTAG+AGG | 0.610795 | 2.3:-45184276 | None:intergenic |
AGTGAATGAGGACAATGGCT+CGG | 0.613459 | 2.3:+45184329 | MS.gene062067:CDS |
TCTTGTTTCATGGCAGTGAG+TGG | 0.614201 | 2.3:-45184129 | None:intergenic |
TGGATCTTGAAGCCAGCGGT+TGG | 0.622425 | 2.3:-45183975 | None:intergenic |
TTTGCAAGCAGAATTAGAGC+CGG | 0.626746 | 2.3:-45184193 | None:intergenic |
GTCATGGATCGAATCTCACC+TGG | 0.627964 | 2.3:+45183542 | MS.gene062067:CDS |
GGCAGTGAGTGGGTGCTGGA+AGG | 0.628226 | 2.3:-45184118 | None:intergenic |
CAGGTAAACCAAGCACTAGA+GGG | 0.633650 | 2.3:-45184275 | None:intergenic |
ATCCAGCCGAAAGTAGGTCA+AGG | 0.636561 | 2.3:+45183638 | MS.gene062067:CDS |
AGGAGCTATGGATTGAGTTG+CGG | 0.639724 | 2.3:-45183700 | None:intergenic |
CAGAAATCGATATGGTTGAG+AGG | 0.642672 | 2.3:-45183584 | None:intergenic |
AAATGGTTCTCCATTCGGAA+GGG | 0.643800 | 2.3:-45184379 | None:intergenic |
CGAAGGCCTGACTTTGCCCG+AGG | 0.647759 | 2.3:+45183261 | MS.gene062067:CDS |
CAATCCATAGCTCCTATATG+CGG | 0.665022 | 2.3:+45183708 | MS.gene062067:CDS |
GAGGAAGTGAATGAGGACAA+TGG | 0.671664 | 2.3:+45184324 | MS.gene062067:CDS |
GCGGCCCGACAGTAAACTAG+AGG | 0.672690 | 2.3:-45184253 | None:intergenic |
GTAAACCAAGCACTAGAGGG+CGG | 0.685839 | 2.3:-45184272 | None:intergenic |
ACAGTGTTCGAGGACAGCAG+CGG | 0.708320 | 2.3:-45183320 | None:intergenic |
TGAATGGATCTTGAAGCCAG+CGG | 0.745695 | 2.3:-45183979 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTAAATATGAGAAATT+GGG | + | chr2.3:45183812-45183831 | MS.gene062067:intron | 10.0% |
!!! | TAATTTTAAATATGAGAAAT+TGG | + | chr2.3:45183811-45183830 | MS.gene062067:intron | 10.0% |
!! | TCATTATTTTCAGTCACAAA+CGG | - | chr2.3:45184306-45184325 | None:intergenic | 25.0% |
!! | TGACAATTTTCATATTGTCA+TGG | + | chr2.3:45183526-45183545 | MS.gene062067:CDS | 25.0% |
!!! | ACATCTTTTTCATCAAACAA+AGG | - | chr2.3:45184489-45184508 | None:intergenic | 25.0% |
AAATAATGAGGAAGTGAATG+AGG | + | chr2.3:45184317-45184336 | MS.gene062067:CDS | 30.0% | |
AAGCATACGATCATTAAAAG+AGG | - | chr2.3:45184097-45184116 | None:intergenic | 30.0% | |
ATAGGAACAAATGTTAGTCA+TGG | + | chr2.3:45184432-45184451 | MS.gene062067:intron | 30.0% | |
GTTATGGGAAACAATGTAAT+AGG | + | chr2.3:45184414-45184433 | MS.gene062067:intron | 30.0% | |
GTTTGTGACTGAAAATAATG+AGG | + | chr2.3:45184305-45184324 | MS.gene062067:CDS | 30.0% | |
TAGGAACAAATGTTAGTCAT+GGG | + | chr2.3:45184433-45184452 | MS.gene062067:intron | 30.0% | |
TGAAAATTGTCATACAACCA+TGG | - | chr2.3:45183518-45183537 | None:intergenic | 30.0% | |
TTTGAATTAGAAGCTGATGA+TGG | + | chr2.3:45183893-45183912 | MS.gene062067:intron | 30.0% | |
! | AGCAATAACATCTTGTTTCA+TGG | - | chr2.3:45184142-45184161 | None:intergenic | 30.0% |
!! | TGATGATGGAATTCGTAATT+GGG | + | chr2.3:45183907-45183926 | MS.gene062067:intron | 30.0% |
!!! | AATTGGGTGTTTTTTGTTAC+AGG | + | chr2.3:45183828-45183847 | MS.gene062067:intron | 30.0% |
AGGAACAAATGTTAGTCATG+GGG | + | chr2.3:45184434-45184453 | MS.gene062067:intron | 35.0% | |
CTTCTAATTCAAACAACTCC+GGG | - | chr2.3:45183886-45183905 | None:intergenic | 35.0% | |
GCTTCTAATTCAAACAACTC+CGG | - | chr2.3:45183887-45183906 | None:intergenic | 35.0% | |
TTTGTTCCAATTCCATCACA+AGG | + | chr2.3:45183463-45183482 | MS.gene062067:intron | 35.0% | |
!! | CTGATGATGGAATTCGTAAT+TGG | + | chr2.3:45183906-45183925 | MS.gene062067:intron | 35.0% |
!! | GATGATGGAATTCGTAATTG+GGG | + | chr2.3:45183908-45183927 | MS.gene062067:intron | 35.0% |
!! | TCTCAACCATATCGATTTCT+GGG | + | chr2.3:45183586-45183605 | MS.gene062067:CDS | 35.0% |
AAATGGTTCTCCATTCGGAA+GGG | - | chr2.3:45184382-45184401 | None:intergenic | 40.0% | |
AACAAATGTTAGTCATGGGG+AGG | + | chr2.3:45184437-45184456 | MS.gene062067:intron | 40.0% | |
AATGCAGCGCATGCTAAAAA+TGG | + | chr2.3:45184168-45184187 | MS.gene062067:CDS | 40.0% | |
AGCAACTTTGATCCGCATAT+AGG | - | chr2.3:45183723-45183742 | None:intergenic | 40.0% | |
AGGTTCAGACTCTAGGTTTA+GGG | - | chr2.3:45183296-45183315 | None:intergenic | 40.0% | |
ATAACCCCATCAGCAACAAA+TGG | - | chr2.3:45184399-45184418 | None:intergenic | 40.0% | |
CAATCCATAGCTCCTATATG+CGG | + | chr2.3:45183708-45183727 | MS.gene062067:CDS | 40.0% | |
CAGAAATCGATATGGTTGAG+AGG | - | chr2.3:45183587-45183606 | None:intergenic | 40.0% | |
CCTTCGAGATTGAGATGATT+GGG | - | chr2.3:45183247-45183266 | None:intergenic | 40.0% | |
GCAACAAATGGTTCTCCATT+CGG | - | chr2.3:45184387-45184406 | None:intergenic | 40.0% | |
GGTTGAGAGGAACAAAGTTT+GGG | - | chr2.3:45183574-45183593 | None:intergenic | 40.0% | |
GTACCAATCCTGTTTGTAAC+CGG | - | chr2.3:45183947-45183966 | None:intergenic | 40.0% | |
TGCTTGCAAAGTTCAACTTC+TGG | + | chr2.3:45184206-45184225 | MS.gene062067:CDS | 40.0% | |
TGGTTGAGAGGAACAAAGTT+TGG | - | chr2.3:45183575-45183594 | None:intergenic | 40.0% | |
TGTTACAGGTGTGGTTTACT+CGG | + | chr2.3:45183842-45183861 | MS.gene062067:intron | 40.0% | |
TTCGGCTGGATAAATCCAAA+GGG | - | chr2.3:45183629-45183648 | None:intergenic | 40.0% | |
TTTCGGCTGGATAAATCCAA+AGG | - | chr2.3:45183630-45183649 | None:intergenic | 40.0% | |
TTTGCAAGCAGAATTAGAGC+CGG | - | chr2.3:45184196-45184215 | None:intergenic | 40.0% | |
TTTGTTGCTGATGGGGTTAT+GGG | + | chr2.3:45184399-45184418 | MS.gene062067:CDS | 40.0% | |
! | AGAACCATTTGTTGCTGATG+GGG | + | chr2.3:45184392-45184411 | MS.gene062067:CDS | 40.0% |
! | ATTTGTTGCTGATGGGGTTA+TGG | + | chr2.3:45184398-45184417 | MS.gene062067:CDS | 40.0% |
! | CATCAACCTTGTGATGGAAT+TGG | - | chr2.3:45183472-45183491 | None:intergenic | 40.0% |
! | GAGAACCATTTGTTGCTGAT+GGG | + | chr2.3:45184391-45184410 | MS.gene062067:CDS | 40.0% |
! | GCGGTCAACATAAGCTTTTA+GGG | - | chr2.3:45183684-45183703 | None:intergenic | 40.0% |
! | GTTTAGGGTTAAACCTTCCT+CGG | - | chr2.3:45183281-45183300 | None:intergenic | 40.0% |
! | TGCGGTCAACATAAGCTTTT+AGG | - | chr2.3:45183685-45183704 | None:intergenic | 40.0% |
! | TTCAGCCTCTAGTTTACTGT+CGG | + | chr2.3:45184248-45184267 | MS.gene062067:CDS | 40.0% |
! | TTTAGCATGCGCTGCATTTT+GGG | - | chr2.3:45184166-45184185 | None:intergenic | 40.0% |
! | TTTAGGGTTAAACCTTCCTC+GGG | - | chr2.3:45183280-45183299 | None:intergenic | 40.0% |
! | TTTTAGCATGCGCTGCATTT+TGG | - | chr2.3:45184167-45184186 | None:intergenic | 40.0% |
!! | ATGGACCTTCCTCTAAAACA+GGG | - | chr2.3:45183499-45183518 | None:intergenic | 40.0% |
!! | CTCTCAACCATATCGATTTC+TGG | + | chr2.3:45183585-45183604 | MS.gene062067:CDS | 40.0% |
!! | TGATGCAAACCCTGTTTTAG+AGG | + | chr2.3:45183487-45183506 | MS.gene062067:intron | 40.0% |
!!! | GGTGTTTTTTGTTACAGGTG+TGG | + | chr2.3:45183833-45183852 | MS.gene062067:intron | 40.0% |
AAGCCGGTTACAAACAGGAT+TGG | + | chr2.3:45183941-45183960 | MS.gene062067:intron | 45.0% | |
ACATACCGACAAAGTTTGCC+CGG | + | chr2.3:45183865-45183884 | MS.gene062067:intron | 45.0% | |
ACCTTAAGCCGGTTACAAAC+AGG | + | chr2.3:45183936-45183955 | MS.gene062067:intron | 45.0% | |
AGACATACGCTCGCTGAAAT+AGG | - | chr2.3:45183386-45183405 | None:intergenic | 45.0% | |
AGTGAATGAGGACAATGGCT+CGG | + | chr2.3:45184329-45184348 | MS.gene062067:CDS | 45.0% | |
CAAAATCGCCATTGCTTGCA+CGG | - | chr2.3:45183784-45183803 | None:intergenic | 45.0% | |
CAAATGGTTCTCCATTCGGA+AGG | - | chr2.3:45184383-45184402 | None:intergenic | 45.0% | |
CAAGGTCTAGGCAGTTTCTT+AGG | + | chr2.3:45183656-45183675 | MS.gene062067:CDS | 45.0% | |
CAGGTAAACCAAGCACTAGA+GGG | - | chr2.3:45184278-45184297 | None:intergenic | 45.0% | |
CAGGTTCAGACTCTAGGTTT+AGG | - | chr2.3:45183297-45183316 | None:intergenic | 45.0% | |
CCCAATCATCTCAATCTCGA+AGG | + | chr2.3:45183244-45183263 | MS.gene062067:CDS | 45.0% | |
CCTAGACCTTGACCTACTTT+CGG | - | chr2.3:45183647-45183666 | None:intergenic | 45.0% | |
CTTGGACCCAGAAATCGATA+TGG | - | chr2.3:45183595-45183614 | None:intergenic | 45.0% | |
CTTGTTTCATGGCAGTGAGT+GGG | - | chr2.3:45184131-45184150 | None:intergenic | 45.0% | |
GAGGAAGTGAATGAGGACAA+TGG | + | chr2.3:45184324-45184343 | MS.gene062067:CDS | 45.0% | |
GCCTTCGAGATTGAGATGAT+TGG | - | chr2.3:45183248-45183267 | None:intergenic | 45.0% | |
GCGCATGCTAAAAATGGTAC+CGG | + | chr2.3:45184174-45184193 | MS.gene062067:CDS | 45.0% | |
GGATTTATCCAGCCGAAAGT+AGG | + | chr2.3:45183632-45183651 | MS.gene062067:CDS | 45.0% | |
GGTTTGCATCAACCTTGTGA+TGG | - | chr2.3:45183478-45183497 | None:intergenic | 45.0% | |
TAATTGTAACCCCGTTTGCC+TGG | - | chr2.3:45183421-45183440 | None:intergenic | 45.0% | |
TGAATGGATCTTGAAGCCAG+CGG | - | chr2.3:45183982-45184001 | None:intergenic | 45.0% | |
TGATCCGCATATAGGAGCTA+TGG | - | chr2.3:45183715-45183734 | None:intergenic | 45.0% | |
! | AGGAGCTATGGATTGAGTTG+CGG | - | chr2.3:45183703-45183722 | None:intergenic | 45.0% |
! | ATGGCTCGGAATTGAGGAAA+AGG | + | chr2.3:45184343-45184362 | MS.gene062067:CDS | 45.0% |
! | GATTTCTGGGTCCAAGTACA+TGG | + | chr2.3:45183599-45183618 | MS.gene062067:CDS | 45.0% |
! | GGAGAACCATTTGTTGCTGA+TGG | + | chr2.3:45184390-45184409 | MS.gene062067:CDS | 45.0% |
! | TCAGCCTCTAGTTTACTGTC+GGG | + | chr2.3:45184249-45184268 | MS.gene062067:CDS | 45.0% |
! | TCCTGTTTGTAACCGGCTTA+AGG | - | chr2.3:45183940-45183959 | None:intergenic | 45.0% |
! | TCTTGTTTCATGGCAGTGAG+TGG | - | chr2.3:45184132-45184151 | None:intergenic | 45.0% |
!! | CATGGACCTTCCTCTAAAAC+AGG | - | chr2.3:45183500-45183519 | None:intergenic | 45.0% |
!!! | CTGTTTTAGAGGAAGGTCCA+TGG | + | chr2.3:45183498-45183517 | MS.gene062067:intron | 45.0% |
!!! | GCAAACCCTGTTTTAGAGGA+AGG | + | chr2.3:45183491-45183510 | MS.gene062067:intron | 45.0% |
ACACGCCATGCTTTCTTCAG+AGG | - | chr2.3:45183761-45183780 | None:intergenic | 50.0% | |
AGAGGCTGAAGTTCCTGTAG+AGG | - | chr2.3:45184238-45184257 | None:intergenic | 50.0% | |
ATCCAGCCGAAAGTAGGTCA+AGG | + | chr2.3:45183638-45183657 | MS.gene062067:CDS | 50.0% | |
ATGTCTCGTCCTTGGAAACC+AGG | + | chr2.3:45183400-45183419 | MS.gene062067:intron | 50.0% | |
CAAAGGGCAGACCATGTACT+TGG | - | chr2.3:45183613-45183632 | None:intergenic | 50.0% | |
CAACTCCGGGCAAACTTTGT+CGG | - | chr2.3:45183873-45183892 | None:intergenic | 50.0% | |
CAAGTACATGGTCTGCCCTT+TGG | + | chr2.3:45183611-45183630 | MS.gene062067:CDS | 50.0% | |
CCGAAAGTAGGTCAAGGTCT+AGG | + | chr2.3:45183644-45183663 | MS.gene062067:CDS | 50.0% | |
CGACACACATGCTTCTGGTA+CGG | + | chr2.3:45184062-45184081 | MS.gene062067:CDS | 50.0% | |
GACACACATGCTTCTGGTAC+GGG | + | chr2.3:45184063-45184082 | MS.gene062067:CDS | 50.0% | |
GACCAATGAGACAGTGTTCG+AGG | - | chr2.3:45183333-45183352 | None:intergenic | 50.0% | |
GCAGGTAAACCAAGCACTAG+AGG | - | chr2.3:45184279-45184298 | None:intergenic | 50.0% | |
GCTCGCTGAAATAGGCAAAC+TGG | - | chr2.3:45183378-45183397 | None:intergenic | 50.0% | |
GTAAACCAAGCACTAGAGGG+CGG | - | chr2.3:45184275-45184294 | None:intergenic | 50.0% | |
GTCATGGATCGAATCTCACC+TGG | + | chr2.3:45183542-45183561 | MS.gene062067:CDS | 50.0% | |
GTCCTCGAACACTGTCTCAT+TGG | + | chr2.3:45183328-45183347 | MS.gene062067:CDS | 50.0% | |
GTCCTTGGAAACCAGGCAAA+CGG | + | chr2.3:45183407-45183426 | MS.gene062067:intron | 50.0% | |
TCAGTCACAAACGGAACAGC+AGG | - | chr2.3:45184297-45184316 | None:intergenic | 50.0% | |
TCCTTGGAAACCAGGCAAAC+GGG | + | chr2.3:45183408-45183427 | MS.gene062067:intron | 50.0% | |
! | ACAAAGTTTGGGACGACACC+AGG | - | chr2.3:45183563-45183582 | None:intergenic | 50.0% |
! | AGGACAATGGCTCGGAATTG+AGG | + | chr2.3:45184337-45184356 | MS.gene062067:CDS | 50.0% |
! | CTGTGCCTCTGAAGAAAGCA+TGG | + | chr2.3:45183753-45183772 | MS.gene062067:CDS | 50.0% |
!! | CGGTTTCAGGTTCAGACTCT+AGG | - | chr2.3:45183303-45183322 | None:intergenic | 50.0% |
AACCTTCCTCGGGCAAAGTC+AGG | - | chr2.3:45183270-45183289 | None:intergenic | 55.0% | |
ACAGTGTTCGAGGACAGCAG+CGG | - | chr2.3:45183323-45183342 | None:intergenic | 55.0% | |
AGTAGTGCCACCAGCAGCAT+GGG | - | chr2.3:45184025-45184044 | None:intergenic | 55.0% | |
CCTTGGAAACCAGGCAAACG+GGG | + | chr2.3:45183409-45183428 | MS.gene062067:intron | 55.0% | |
CGCATGTTTGCCCTTCCGAA+TGG | + | chr2.3:45184369-45184388 | MS.gene062067:CDS | 55.0% | |
GACCTTGACCTACTTTCGGC+TGG | - | chr2.3:45183643-45183662 | None:intergenic | 55.0% | |
GCGTGGCACAGATACGTGAA+TGG | - | chr2.3:45183998-45184017 | None:intergenic | 55.0% | |
GGCTGAAGTTCCTGTAGAGG+AGG | - | chr2.3:45184235-45184254 | None:intergenic | 55.0% | |
GTACTGTTGCAACCAACCGC+TGG | + | chr2.3:45183963-45183982 | MS.gene062067:CDS | 55.0% | |
TGGATCTTGAAGCCAGCGGT+TGG | - | chr2.3:45183978-45183997 | None:intergenic | 55.0% | |
TTGGGGAGCTGACCTTAAGC+CGG | + | chr2.3:45183925-45183944 | MS.gene062067:intron | 55.0% | |
!! | CTTCTGGCTTCCTCCTCTAC+AGG | + | chr2.3:45184222-45184241 | MS.gene062067:CDS | 55.0% |
CAGTAGTGCCACCAGCAGCA+TGG | - | chr2.3:45184026-45184045 | None:intergenic | 60.0% | |
CCCCGTTTGCCTGGTTTCCA+AGG | - | chr2.3:45183412-45183431 | None:intergenic | 60.0% | |
GCGAGCGTATGTCTCGTCCT+TGG | + | chr2.3:45183392-45183411 | MS.gene062067:intron | 60.0% | |
GCGGCCCGACAGTAAACTAG+AGG | - | chr2.3:45184256-45184275 | None:intergenic | 60.0% | |
GGCACTACTGCTGTTCCTGC+TGG | + | chr2.3:45184036-45184055 | MS.gene062067:CDS | 60.0% | |
GGCTGCGACACACATGCTTC+TGG | + | chr2.3:45184057-45184076 | MS.gene062067:CDS | 60.0% | |
TCATGGCAGTGAGTGGGTGC+TGG | - | chr2.3:45184125-45184144 | None:intergenic | 60.0% | |
TCGAGGACAGCAGCGGTTTC+AGG | - | chr2.3:45183316-45183335 | None:intergenic | 60.0% | |
TGCCACCAGCAGCATGGGTT+TGG | - | chr2.3:45184020-45184039 | None:intergenic | 60.0% | |
TGGCGTGTCCGTGCAAGCAA+TGG | + | chr2.3:45183773-45183792 | MS.gene062067:CDS | 60.0% | |
CCACGCCAAACCCATGCTGC+TGG | + | chr2.3:45184012-45184031 | MS.gene062067:CDS | 65.0% | |
CCAGCAGCATGGGTTTGGCG+TGG | - | chr2.3:45184015-45184034 | None:intergenic | 65.0% | |
CGAAGGCCTGACTTTGCCCG+AGG | + | chr2.3:45183261-45183280 | MS.gene062067:CDS | 65.0% | |
CGCCAAACCCATGCTGCTGG+TGG | + | chr2.3:45184015-45184034 | MS.gene062067:CDS | 65.0% | |
GCATGTGTGTCGCAGCCAGC+AGG | - | chr2.3:45184054-45184073 | None:intergenic | 65.0% | |
GGCCTGACTTTGCCCGAGGA+AGG | + | chr2.3:45183265-45183284 | MS.gene062067:CDS | 65.0% | |
!! | GGCAGTGAGTGGGTGCTGGA+AGG | - | chr2.3:45184121-45184140 | None:intergenic | 65.0% |
TCGGGCCGCCCTCTAGTGCT+TGG | + | chr2.3:45184267-45184286 | MS.gene062067:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 45183238 | 45184510 | 45183238 | ID=MS.gene062067 |
chr2.3 | mRNA | 45183238 | 45184510 | 45183238 | ID=MS.gene062067.t1;Parent=MS.gene062067 |
chr2.3 | exon | 45183238 | 45183397 | 45183238 | ID=MS.gene062067.t1.exon1;Parent=MS.gene062067.t1 |
chr2.3 | CDS | 45183238 | 45183397 | 45183238 | ID=cds.MS.gene062067.t1;Parent=MS.gene062067.t1 |
chr2.3 | exon | 45183507 | 45183802 | 45183507 | ID=MS.gene062067.t1.exon2;Parent=MS.gene062067.t1 |
chr2.3 | CDS | 45183507 | 45183802 | 45183507 | ID=cds.MS.gene062067.t1;Parent=MS.gene062067.t1 |
chr2.3 | exon | 45183958 | 45184428 | 45183958 | ID=MS.gene062067.t1.exon3;Parent=MS.gene062067.t1 |
chr2.3 | CDS | 45183958 | 45184428 | 45183958 | ID=cds.MS.gene062067.t1;Parent=MS.gene062067.t1 |
chr2.3 | exon | 45184505 | 45184510 | 45184505 | ID=MS.gene062067.t1.exon4;Parent=MS.gene062067.t1 |
chr2.3 | CDS | 45184505 | 45184510 | 45184505 | ID=cds.MS.gene062067.t1;Parent=MS.gene062067.t1 |
Gene Sequence |
Protein sequence |