Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05576.t1 | AES70414.1 | 57.2 | 346 | 82 | 3 | 1 | 346 | 1 | 280 | 4.30E-98 | 368.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05576.t1 | O04244 | 26.5 | 136 | 96 | 2 | 83 | 216 | 6 | 139 | 8.4e-10 | 66.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05576.t1 | G7J017 | 57.2 | 346 | 82 | 3 | 1 | 346 | 1 | 280 | 3.1e-98 | 368.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05576.t1 | MTR_3g053920 | 57.225 | 346 | 82 | 3 | 1 | 346 | 1 | 280 | 3.76e-126 | 363 |
MS.gene05576.t1 | MTR_2g061500 | 80.620 | 129 | 25 | 0 | 1 | 129 | 1 | 129 | 8.63e-74 | 225 |
MS.gene05576.t1 | MTR_4g103530 | 80.412 | 97 | 19 | 0 | 55 | 151 | 1 | 97 | 4.81e-53 | 174 |
MS.gene05576.t1 | MTR_4g103530 | 55.224 | 67 | 30 | 0 | 251 | 317 | 119 | 185 | 2.03e-16 | 77.0 |
MS.gene05576.t1 | MTR_7g011710 | 65.909 | 88 | 30 | 0 | 55 | 142 | 1 | 88 | 1.73e-36 | 130 |
MS.gene05576.t1 | MTR_6g033215 | 32.749 | 171 | 113 | 1 | 31 | 199 | 124 | 294 | 3.40e-31 | 120 |
MS.gene05576.t1 | MTR_0010s0370 | 35.955 | 178 | 102 | 4 | 8 | 177 | 4 | 177 | 2.29e-29 | 112 |
MS.gene05576.t1 | MTR_0010s0350 | 35.955 | 178 | 102 | 4 | 8 | 177 | 4 | 177 | 2.29e-29 | 112 |
MS.gene05576.t1 | MTR_1g036720 | 34.862 | 109 | 69 | 1 | 7 | 113 | 3 | 111 | 2.24e-15 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05576.t1 | AT2G17920 | 27.570 | 214 | 147 | 5 | 8 | 216 | 9 | 219 | 3.20e-17 | 81.6 |
MS.gene05576.t1 | AT2G41590 | 29.861 | 144 | 93 | 3 | 77 | 216 | 80 | 219 | 4.29e-16 | 79.0 |
MS.gene05576.t1 | AT3G31430 | 28.497 | 193 | 124 | 5 | 30 | 215 | 126 | 311 | 6.88e-16 | 78.2 |
MS.gene05576.t1 | AT3G57587 | 25.366 | 205 | 142 | 6 | 77 | 277 | 80 | 277 | 1.62e-15 | 77.4 |
MS.gene05576.t1 | AT5G36228 | 27.879 | 165 | 111 | 4 | 69 | 227 | 71 | 233 | 1.67e-14 | 74.3 |
MS.gene05576.t1 | AT2G13450 | 27.041 | 196 | 133 | 5 | 27 | 215 | 26 | 218 | 1.92e-14 | 74.3 |
MS.gene05576.t1 | AT5G25200 | 27.083 | 144 | 97 | 3 | 77 | 216 | 80 | 219 | 1.28e-13 | 71.6 |
MS.gene05576.t1 | AT5G18636 | 27.083 | 144 | 97 | 3 | 77 | 216 | 80 | 219 | 1.40e-13 | 71.6 |
MS.gene05576.t1 | AT2G02103 | 26.776 | 183 | 130 | 2 | 36 | 216 | 39 | 219 | 2.67e-13 | 70.9 |
MS.gene05576.t1 | AT3G47920 | 26.761 | 142 | 100 | 2 | 77 | 216 | 9 | 148 | 3.14e-13 | 70.1 |
Find 106 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTAAACCATATCAATTTC+TGG | 0.150427 | 3.2:-54082960 | MS.gene05576:CDS |
CAGGCTCGGTTTCAAGATTA+AGG | 0.191734 | 3.2:+54083250 | None:intergenic |
CTGATGATGGCGTGCGAAAC+TGG | 0.221080 | 3.2:-54082639 | MS.gene05576:CDS |
AGCATCCTGTCATTGAAATT+TGG | 0.246745 | 3.2:+54082460 | None:intergenic |
AACCCGTTTGACTGGCTTCC+AGG | 0.249150 | 3.2:+54083134 | None:intergenic |
CGACATACGCTCGCTGAAAT+AGG | 0.271549 | 3.2:+54083161 | None:intergenic |
GCCTGTGGTGCTTGGCTTAC+CGG | 0.276985 | 3.2:-54082278 | MS.gene05576:CDS |
CCAGAAATTGATATGGTTTA+GGG | 0.278105 | 3.2:+54082960 | None:intergenic |
CCCAGAAATTGATATGGTTT+AGG | 0.288835 | 3.2:+54082959 | None:intergenic |
ATTTACTGCTGAAGGGGAAT+TGG | 0.296569 | 3.2:-54082146 | MS.gene05576:intron |
TCGAGGATGGCAGTGGGTTC+AGG | 0.326911 | 3.2:+54083231 | None:intergenic |
CATTCAAACCTCAACCTTGC+TGG | 0.336652 | 3.2:-54083300 | MS.gene05576:CDS |
TCCTAGACCTTGACCTACTT+TGG | 0.341730 | 3.2:+54082900 | None:intergenic |
CCTAGACCTTGACCTACTTT+GGG | 0.343147 | 3.2:+54082901 | None:intergenic |
CTTGCACCCAGAAATTGATA+TGG | 0.353017 | 3.2:+54082953 | None:intergenic |
TCACACCCAGCATGTGTGAT+AGG | 0.355835 | 3.2:+54082250 | None:intergenic |
TCCAACCAGCCTGTGGTGCT+TGG | 0.358282 | 3.2:-54082286 | MS.gene05576:CDS |
CTTGTTTCAGTTCCATCATA+AGG | 0.363309 | 3.2:-54083082 | MS.gene05576:CDS |
TGCGACACAGTTGCTGGAAT+GGG | 0.375410 | 3.2:+54082550 | None:intergenic |
TTACCTTGCGACACAGTTGC+TGG | 0.378938 | 3.2:+54082544 | None:intergenic |
TGATTGCAGTTATTTGAGTT+TGG | 0.383927 | 3.2:+54082431 | None:intergenic |
CAAGTCCATGGTCTGCCGTT+TGG | 0.386489 | 3.2:-54082934 | MS.gene05576:CDS |
AATTGAGTTTCGGCCATCAT+AGG | 0.391128 | 3.2:+54082855 | None:intergenic |
TTTACTGCTGAAGGGGAATT+GGG | 0.394311 | 3.2:-54082145 | MS.gene05576:intron |
GCTCGCTGAAATAGGCAAAC+TGG | 0.409343 | 3.2:+54083169 | None:intergenic |
GTGCCAACGCGTTGAGCAGC+AGG | 0.416188 | 3.2:+54082601 | None:intergenic |
GTGATCGTAACCCGTTTGAC+TGG | 0.416613 | 3.2:+54083126 | None:intergenic |
ATCCTCGAAAACTGCCTGAT+TGG | 0.420785 | 3.2:-54083216 | MS.gene05576:CDS |
GCTTCTAATGCAACTGCTGC+AGG | 0.421900 | 3.2:-54082496 | MS.gene05576:CDS |
ACAAAGCTCGGGACGACACC+AGG | 0.441325 | 3.2:+54082985 | None:intergenic |
GGTATAGGTACTGGCTTCTC+TGG | 0.442805 | 3.2:-54082364 | MS.gene05576:CDS |
AGGCTCGGTTTCAAGATTAA+GGG | 0.445673 | 3.2:+54083251 | None:intergenic |
AGGCACTATGAATTGAGTTT+CGG | 0.446170 | 3.2:+54082845 | None:intergenic |
CCTAAACCATATCAATTTCT+GGG | 0.456381 | 3.2:-54082959 | MS.gene05576:CDS |
TATCTGCCTTCTTCCTCAAC+AGG | 0.462139 | 3.2:-54082331 | MS.gene05576:CDS |
TGGTTTAGGGGCACAAAGCT+CGG | 0.468910 | 3.2:+54082973 | None:intergenic |
GAGTTAAACCAGCAAGGTTG+AGG | 0.471146 | 3.2:+54083292 | None:intergenic |
GCGAGCGTATGTCGCGAGCC+TGG | 0.475977 | 3.2:-54083152 | MS.gene05576:CDS |
GGTTTAGGGGCACAAAGCTC+GGG | 0.484462 | 3.2:+54082974 | None:intergenic |
GCTGTCCCTATCACACATGC+TGG | 0.489213 | 3.2:-54082256 | MS.gene05576:CDS |
ACAACCACGGACCTTCATCT+AGG | 0.489467 | 3.2:+54083043 | None:intergenic |
AGCCTGGAAGCCAGTCAAAC+GGG | 0.491071 | 3.2:-54083136 | MS.gene05576:CDS |
GATGGCAGTGGGTTCAGGCT+CGG | 0.492906 | 3.2:+54083236 | None:intergenic |
AGGCTGGTTGGACAGCAAGC+TGG | 0.494235 | 3.2:+54082297 | None:intergenic |
TCATACGGACAAGGTGTGTC+CGG | 0.496829 | 3.2:-54082680 | MS.gene05576:CDS |
ATGAAACAAGGTATAGGTAC+TGG | 0.497665 | 3.2:-54082373 | MS.gene05576:CDS |
CAGCAAGGACACGACCAATC+AGG | 0.497675 | 3.2:+54083202 | None:intergenic |
TTGCGACACAGTTGCTGGAA+TGG | 0.502482 | 3.2:+54082549 | None:intergenic |
CAAAAGAGCCGTTGCTAGCA+CGG | 0.508271 | 3.2:+54082764 | None:intergenic |
TGATGATGGCGTGCGAAACT+GGG | 0.511419 | 3.2:-54082638 | MS.gene05576:CDS |
GAGCCTGGAAGCCAGTCAAA+CGG | 0.514466 | 3.2:-54083137 | MS.gene05576:CDS |
GGTTTCATTCAACCCAAAGT+AGG | 0.516836 | 3.2:-54082913 | MS.gene05576:CDS |
GTGTCCGGAGCTGTATGAAT+TGG | 0.521204 | 3.2:-54082665 | MS.gene05576:CDS |
GCCGGTAAGCCAAGCACCAC+AGG | 0.522732 | 3.2:+54082277 | None:intergenic |
GTTGAGGTTTGAATGATCCA+TGG | 0.528657 | 3.2:+54083308 | None:intergenic |
TGGTTTAACTCTGTCTGAGG+AGG | 0.532108 | 3.2:-54083280 | MS.gene05576:CDS |
CGACCTGCTGCTCAACGCGT+TGG | 0.534335 | 3.2:-54082604 | MS.gene05576:CDS |
TGTCACAGGTGTGGGCTGAT+CGG | 0.534419 | 3.2:-54082703 | MS.gene05576:CDS |
CATAGGACTTAAGAGTATCA+AGG | 0.534944 | 3.2:+54082872 | None:intergenic |
GATACTCTTAAGTCCTATGA+TGG | 0.538369 | 3.2:-54082868 | MS.gene05576:CDS |
TTGGGTTGAATGAAACCAAA+CGG | 0.543919 | 3.2:+54082919 | None:intergenic |
TATGAATTGGACTCTGATGA+TGG | 0.543990 | 3.2:-54082652 | MS.gene05576:CDS |
GAGTGGCATCCACCTTATGA+TGG | 0.544576 | 3.2:+54083070 | None:intergenic |
CACACCCAGCATGTGTGATA+GGG | 0.547973 | 3.2:+54082251 | None:intergenic |
CTGTGCCAAATTTCAATGAC+AGG | 0.551379 | 3.2:-54082465 | MS.gene05576:CDS |
TGATAACTTTCATATAGCAC+TGG | 0.552206 | 3.2:-54083019 | MS.gene05576:CDS |
GTGTGGGCTGATCGGTCATA+CGG | 0.552665 | 3.2:-54082695 | MS.gene05576:CDS |
GCCAAGCACCACAGGCTGGT+TGG | 0.553708 | 3.2:+54082285 | None:intergenic |
GCCACTCGTGTCCTAGATGA+AGG | 0.553709 | 3.2:-54083054 | MS.gene05576:CDS |
GCACTGCTGCAACAAATCGT+TGG | 0.554627 | 3.2:-54082582 | MS.gene05576:CDS |
AATTTCTGGGTGCAAGTCCA+TGG | 0.557034 | 3.2:-54082946 | MS.gene05576:CDS |
CGCGTTGAGCAGCAGGTCGG+AGG | 0.558724 | 3.2:+54082608 | None:intergenic |
CTTGCTGTCCAACCAGCCTG+TGG | 0.560301 | 3.2:-54082293 | MS.gene05576:CDS |
CCCAAAGTAGGTCAAGGTCT+AGG | 0.565295 | 3.2:-54082901 | MS.gene05576:CDS |
GAGTCCAATTCATACAGCTC+CGG | 0.566714 | 3.2:+54082661 | None:intergenic |
TGAAACCAAACGGCAGACCA+TGG | 0.572017 | 3.2:+54082929 | None:intergenic |
TGCTGGTTTAACTCTGTCTG+AGG | 0.573494 | 3.2:-54083283 | MS.gene05576:CDS |
TTGAGGTTTGAATGATCCAT+GGG | 0.578088 | 3.2:+54083309 | None:intergenic |
ATTCAACCCAAAGTAGGTCA+AGG | 0.579948 | 3.2:-54082907 | MS.gene05576:CDS |
GGTTTAACTCTGTCTGAGGA+GGG | 0.582639 | 3.2:-54083279 | MS.gene05576:CDS |
CTGTCCCTATCACACATGCT+GGG | 0.583592 | 3.2:-54082255 | MS.gene05576:intron |
GTAAGCCAAGCACCACAGGC+TGG | 0.583680 | 3.2:+54082281 | None:intergenic |
CAAGGTAACAACACTGCTAG+TGG | 0.585119 | 3.2:-54082529 | MS.gene05576:CDS |
TGGCGTGTCCGTGCTAGCAA+CGG | 0.590091 | 3.2:-54082772 | MS.gene05576:CDS |
GCGACACAGTTGCTGGAATG+GGG | 0.599471 | 3.2:+54082551 | None:intergenic |
GCATGTGTGATAGGGACAGC+CGG | 0.600259 | 3.2:+54082259 | None:intergenic |
GTTTCAGTTCCATCATAAGG+TGG | 0.609100 | 3.2:-54083079 | MS.gene05576:CDS |
ATTGAAATTTGGCACAGCAG+CGG | 0.616691 | 3.2:+54082471 | None:intergenic |
TGCCTACATGCGTATCAAAG+TGG | 0.618705 | 3.2:-54082827 | MS.gene05576:CDS |
CTGGTTGGACAGCAAGCTGG+AGG | 0.624541 | 3.2:+54082300 | None:intergenic |
GAATTGCCTGTTGAGGAAGA+AGG | 0.624933 | 3.2:+54082325 | None:intergenic |
CAGAAATTGATATGGTTTAG+GGG | 0.626997 | 3.2:+54082961 | None:intergenic |
GCTGATCGGTCATACGGACA+AGG | 0.630704 | 3.2:-54082689 | MS.gene05576:CDS |
ATTCCAGCAACTGTGTCGCA+AGG | 0.634655 | 3.2:-54082547 | MS.gene05576:CDS |
GATGATGGCGTGCGAAACTG+GGG | 0.637383 | 3.2:-54082637 | MS.gene05576:CDS |
CAACGCGTTGAGCAGCAGGT+CGG | 0.642576 | 3.2:+54082605 | None:intergenic |
GGAGGTCGAATTGCCTGTTG+AGG | 0.652398 | 3.2:+54082318 | None:intergenic |
ATCCACTTTGATACGCATGT+AGG | 0.663006 | 3.2:+54082825 | None:intergenic |
GGTAACAACACTGCTAGTGG+TGG | 0.664668 | 3.2:-54082526 | MS.gene05576:CDS |
GCACTGGATCGTATTAACCC+TGG | 0.669762 | 3.2:-54083003 | MS.gene05576:CDS |
CAGACAGAGTTAAACCAGCA+AGG | 0.669821 | 3.2:+54083286 | None:intergenic |
ACTGGATTTCACGATCAGCA+AGG | 0.674576 | 3.2:+54083187 | None:intergenic |
GTGTCCTAGATGAAGGTCCG+TGG | 0.675720 | 3.2:-54083047 | MS.gene05576:CDS |
ACCTTCATCTAGGACACGAG+TGG | 0.684214 | 3.2:+54083053 | None:intergenic |
CAAAGCTCGGGACGACACCA+GGG | 0.707217 | 3.2:+54082986 | None:intergenic |
TGAAAGTTATCATACAACCA+CGG | 0.735906 | 3.2:+54083030 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CAGAAATTGATATGGTTTAG+GGG | + | chr3.2:54082487-54082506 | None:intergenic | 30.0% | |
CCAGAAATTGATATGGTTTA+GGG | + | chr3.2:54082488-54082507 | None:intergenic | 30.0% | |
CCTAAACCATATCAATTTCT+GGG | - | chr3.2:54082486-54082505 | MS.gene05576:CDS | 30.0% | |
GCAAAAATGAAACAAGGTAT+AGG | - | chr3.2:54083066-54083085 | MS.gene05576:CDS | 30.0% | |
TCTCATGATGATACTGATAT+TGG | - | chr3.2:54083222-54083241 | MS.gene05576:CDS | 30.0% | |
TGAAAGTTATCATACAACCA+CGG | + | chr3.2:54082418-54082437 | None:intergenic | 30.0% | |
TGATAACTTTCATATAGCAC+TGG | - | chr3.2:54082426-54082445 | MS.gene05576:CDS | 30.0% | |
! | TGATTGCAGTTATTTGAGTT+TGG | + | chr3.2:54083017-54083036 | None:intergenic | 30.0% |
!!! | AATTAGGTGTTTTTTGTCAC+AGG | - | chr3.2:54082728-54082747 | MS.gene05576:CDS | 30.0% |
!!! | ACACGCCATTCTTTTTTTAA+CGG | + | chr3.2:54082661-54082680 | None:intergenic | 30.0% |
ACCAATACATTTACTGCTGA+AGG | - | chr3.2:54083291-54083310 | MS.gene05576:CDS | 35.0% | |
AGCATCCTGTCATTGAAATT+TGG | + | chr3.2:54082988-54083007 | None:intergenic | 35.0% | |
AGGCACTATGAATTGAGTTT+CGG | + | chr3.2:54082603-54082622 | None:intergenic | 35.0% | |
ATGAAACAAGGTATAGGTAC+TGG | - | chr3.2:54083072-54083091 | MS.gene05576:CDS | 35.0% | |
CAATACATTTACTGCTGAAG+GGG | - | chr3.2:54083293-54083312 | MS.gene05576:CDS | 35.0% | |
CCAATACATTTACTGCTGAA+GGG | - | chr3.2:54083292-54083311 | MS.gene05576:CDS | 35.0% | |
CCCAGAAATTGATATGGTTT+AGG | + | chr3.2:54082489-54082508 | None:intergenic | 35.0% | |
CCCTAAACCATATCAATTTC+TGG | - | chr3.2:54082485-54082504 | MS.gene05576:CDS | 35.0% | |
CTTGTTTCAGTTCCATCATA+AGG | - | chr3.2:54082363-54082382 | MS.gene05576:CDS | 35.0% | |
GATACTCTTAAGTCCTATGA+TGG | - | chr3.2:54082577-54082596 | MS.gene05576:CDS | 35.0% | |
TATGAATTGGACTCTGATGA+TGG | - | chr3.2:54082793-54082812 | MS.gene05576:CDS | 35.0% | |
! | CTGTGCCGTTAAAAAAAGAA+TGG | - | chr3.2:54082653-54082672 | MS.gene05576:CDS | 35.0% |
! | TGATGATACTGATATTGGCT+CGG | - | chr3.2:54083227-54083246 | MS.gene05576:CDS | 35.0% |
!! | ACCTTGTTTCATTTTTGCAG+CGG | + | chr3.2:54083064-54083083 | None:intergenic | 35.0% |
!! | CATAGGACTTAAGAGTATCA+AGG | + | chr3.2:54082576-54082595 | None:intergenic | 35.0% |
!! | TTGGGTTGAATGAAACCAAA+CGG | + | chr3.2:54082529-54082548 | None:intergenic | 35.0% |
AATTGAGTTTCGGCCATCAT+AGG | + | chr3.2:54082593-54082612 | None:intergenic | 40.0% | |
ACCGCTGCAAAAATGAAACA+AGG | - | chr3.2:54083060-54083079 | MS.gene05576:CDS | 40.0% | |
ATCCACTTTGATACGCATGT+AGG | + | chr3.2:54082623-54082642 | None:intergenic | 40.0% | |
ATTCAACCCAAAGTAGGTCA+AGG | - | chr3.2:54082538-54082557 | MS.gene05576:CDS | 40.0% | |
ATTGAAATTTGGCACAGCAG+CGG | + | chr3.2:54082977-54082996 | None:intergenic | 40.0% | |
ATTTACTGCTGAAGGGGAAT+TGG | - | chr3.2:54083299-54083318 | MS.gene05576:CDS | 40.0% | |
CCCTTCAGCAGTAAATGTAT+TGG | + | chr3.2:54083295-54083314 | None:intergenic | 40.0% | |
CTGTGCCAAATTTCAATGAC+AGG | - | chr3.2:54082980-54082999 | MS.gene05576:CDS | 40.0% | |
CTTGCACCCAGAAATTGATA+TGG | + | chr3.2:54082495-54082514 | None:intergenic | 40.0% | |
GGTTTCATTCAACCCAAAGT+AGG | - | chr3.2:54082532-54082551 | MS.gene05576:CDS | 40.0% | |
GTTTCAGTTCCATCATAAGG+TGG | - | chr3.2:54082366-54082385 | MS.gene05576:CDS | 40.0% | |
TTTACTGCTGAAGGGGAATT+GGG | - | chr3.2:54083300-54083319 | MS.gene05576:CDS | 40.0% | |
! | AGGCTCGGTTTCAAGATTAA+GGG | + | chr3.2:54082197-54082216 | None:intergenic | 40.0% |
!! | TTGGCTCGGAATTGAAGAAA+AGG | - | chr3.2:54083241-54083260 | MS.gene05576:CDS | 40.0% |
!!! | GTGTTTTTTGTCACAGGTGT+GGG | - | chr3.2:54082734-54082753 | MS.gene05576:CDS | 40.0% |
ACTGGATTTCACGATCAGCA+AGG | + | chr3.2:54082261-54082280 | None:intergenic | 45.0% | |
ATCCTCGAAAACTGCCTGAT+TGG | - | chr3.2:54082229-54082248 | MS.gene05576:intron | 45.0% | |
CAAGGTAACAACACTGCTAG+TGG | - | chr3.2:54082916-54082935 | MS.gene05576:CDS | 45.0% | |
CAGACAGAGTTAAACCAGCA+AGG | + | chr3.2:54082162-54082181 | None:intergenic | 45.0% | |
CATTCAAACCTCAACCTTGC+TGG | - | chr3.2:54082145-54082164 | MS.gene05576:intron | 45.0% | |
CCTAGACCTTGACCTACTTT+GGG | + | chr3.2:54082547-54082566 | None:intergenic | 45.0% | |
GAATTGCCTGTTGAGGAAGA+AGG | + | chr3.2:54083123-54083142 | None:intergenic | 45.0% | |
GAGTCCAATTCATACAGCTC+CGG | + | chr3.2:54082787-54082806 | None:intergenic | 45.0% | |
GAGTTAAACCAGCAAGGTTG+AGG | + | chr3.2:54082156-54082175 | None:intergenic | 45.0% | |
GGTTTAACTCTGTCTGAGGA+GGG | - | chr3.2:54082166-54082185 | MS.gene05576:intron | 45.0% | |
TATCTGCCTTCTTCCTCAAC+AGG | - | chr3.2:54083114-54083133 | MS.gene05576:CDS | 45.0% | |
TCCTAGACCTTGACCTACTT+TGG | + | chr3.2:54082548-54082567 | None:intergenic | 45.0% | |
TGCCTACATGCGTATCAAAG+TGG | - | chr3.2:54082618-54082637 | MS.gene05576:CDS | 45.0% | |
TGGTTTAACTCTGTCTGAGG+AGG | - | chr3.2:54082165-54082184 | MS.gene05576:intron | 45.0% | |
! | AATTTCTGGGTGCAAGTCCA+TGG | - | chr3.2:54082499-54082518 | MS.gene05576:CDS | 45.0% |
! | CAGGCTCGGTTTCAAGATTA+AGG | + | chr3.2:54082198-54082217 | None:intergenic | 45.0% |
!! | AATCAGGCAGTTTTCGAGGA+TGG | + | chr3.2:54082230-54082249 | None:intergenic | 45.0% |
!! | GTTTCATTTTTGCAGCGGTC+TGG | + | chr3.2:54083059-54083078 | None:intergenic | 45.0% |
!! | TGCTGGTTTAACTCTGTCTG+AGG | - | chr3.2:54082162-54082181 | MS.gene05576:intron | 45.0% |
!!! | GGTGTTTTTTGTCACAGGTG+TGG | - | chr3.2:54082733-54082752 | MS.gene05576:CDS | 45.0% |
!!! | AATTTTAAATATGAAAAATT+AGG | - | chr3.2:54082712-54082731 | MS.gene05576:CDS | 5.0% |
ACAACCACGGACCTTCATCT+AGG | + | chr3.2:54082405-54082424 | None:intergenic | 50.0% | |
ATTCCAGCAACTGTGTCGCA+AGG | - | chr3.2:54082898-54082917 | MS.gene05576:CDS | 50.0% | |
CAAAAGAGCCGTTGCTAGCA+CGG | + | chr3.2:54082684-54082703 | None:intergenic | 50.0% | |
CACACCCAGCATGTGTGATA+GGG | + | chr3.2:54083197-54083216 | None:intergenic | 50.0% | |
CCCAAAGTAGGTCAAGGTCT+AGG | - | chr3.2:54082544-54082563 | MS.gene05576:CDS | 50.0% | |
CGACATACGCTCGCTGAAAT+AGG | + | chr3.2:54082287-54082306 | None:intergenic | 50.0% | |
CTGTCCCTATCACACATGCT+GGG | - | chr3.2:54083190-54083209 | MS.gene05576:CDS | 50.0% | |
GAGTGGCATCCACCTTATGA+TGG | + | chr3.2:54082378-54082397 | None:intergenic | 50.0% | |
GCACTGCTGCAACAAATCGT+TGG | - | chr3.2:54082863-54082882 | MS.gene05576:CDS | 50.0% | |
GCACTGGATCGTATTAACCC+TGG | - | chr3.2:54082442-54082461 | MS.gene05576:CDS | 50.0% | |
GCTCGCTGAAATAGGCAAAC+TGG | + | chr3.2:54082279-54082298 | None:intergenic | 50.0% | |
GCTTCTAATGCAACTGCTGC+AGG | - | chr3.2:54082949-54082968 | MS.gene05576:CDS | 50.0% | |
GGTAACAACACTGCTAGTGG+TGG | - | chr3.2:54082919-54082938 | MS.gene05576:CDS | 50.0% | |
GTGATCGTAACCCGTTTGAC+TGG | + | chr3.2:54082322-54082341 | None:intergenic | 50.0% | |
GTGTCCGGAGCTGTATGAAT+TGG | - | chr3.2:54082780-54082799 | MS.gene05576:CDS | 50.0% | |
TCACACCCAGCATGTGTGAT+AGG | + | chr3.2:54083198-54083217 | None:intergenic | 50.0% | |
TCATACGGACAAGGTGTGTC+CGG | - | chr3.2:54082765-54082784 | MS.gene05576:CDS | 50.0% | |
TGAAACCAAACGGCAGACCA+TGG | + | chr3.2:54082519-54082538 | None:intergenic | 50.0% | |
TGCGACACAGTTGCTGGAAT+GGG | + | chr3.2:54082898-54082917 | None:intergenic | 50.0% | |
TTACCTTGCGACACAGTTGC+TGG | + | chr3.2:54082904-54082923 | None:intergenic | 50.0% | |
TTGCGACACAGTTGCTGGAA+TGG | + | chr3.2:54082899-54082918 | None:intergenic | 50.0% | |
! | ACCTTCATCTAGGACACGAG+TGG | + | chr3.2:54082395-54082414 | None:intergenic | 50.0% |
! | GACCAATCAGGCAGTTTTCG+AGG | + | chr3.2:54082234-54082253 | None:intergenic | 50.0% |
! | TGGTTTAGGGGCACAAAGCT+CGG | + | chr3.2:54082475-54082494 | None:intergenic | 50.0% |
!! | CAGTTTTCGAGGATGGCAGT+GGG | + | chr3.2:54082223-54082242 | None:intergenic | 50.0% |
!! | GGTATAGGTACTGGCTTCTC+TGG | - | chr3.2:54083081-54083100 | MS.gene05576:CDS | 50.0% |
!! | TGATGATGGCGTGCGAAACT+GGG | - | chr3.2:54082807-54082826 | MS.gene05576:CDS | 50.0% |
AGCCTGGAAGCCAGTCAAAC+GGG | - | chr3.2:54082309-54082328 | MS.gene05576:CDS | 55.0% | |
CAAGTCCATGGTCTGCCGTT+TGG | - | chr3.2:54082511-54082530 | MS.gene05576:CDS | 55.0% | |
CAGCAAGGACACGACCAATC+AGG | + | chr3.2:54082246-54082265 | None:intergenic | 55.0% | |
GAGCCTGGAAGCCAGTCAAA+CGG | - | chr3.2:54082308-54082327 | MS.gene05576:CDS | 55.0% | |
GCATGTGTGATAGGGACAGC+CGG | + | chr3.2:54083189-54083208 | None:intergenic | 55.0% | |
GCCACTCGTGTCCTAGATGA+AGG | - | chr3.2:54082391-54082410 | MS.gene05576:CDS | 55.0% | |
GCGACACAGTTGCTGGAATG+GGG | + | chr3.2:54082897-54082916 | None:intergenic | 55.0% | |
GCTGATCGGTCATACGGACA+AGG | - | chr3.2:54082756-54082775 | MS.gene05576:CDS | 55.0% | |
GCTGTCCCTATCACACATGC+TGG | - | chr3.2:54083189-54083208 | MS.gene05576:CDS | 55.0% | |
GGAGGTCGAATTGCCTGTTG+AGG | + | chr3.2:54083130-54083149 | None:intergenic | 55.0% | |
GTGTCCTAGATGAAGGTCCG+TGG | - | chr3.2:54082398-54082417 | MS.gene05576:CDS | 55.0% | |
! | GATGATGGCGTGCGAAACTG+GGG | - | chr3.2:54082808-54082827 | MS.gene05576:CDS | 55.0% |
! | GGTTTAGGGGCACAAAGCTC+GGG | + | chr3.2:54082474-54082493 | None:intergenic | 55.0% |
! | GTGTGGGCTGATCGGTCATA+CGG | - | chr3.2:54082750-54082769 | MS.gene05576:CDS | 55.0% |
! | TGTCACAGGTGTGGGCTGAT+CGG | - | chr3.2:54082742-54082761 | MS.gene05576:CDS | 55.0% |
!! | AACCCGTTTGACTGGCTTCC+AGG | + | chr3.2:54082314-54082333 | None:intergenic | 55.0% |
!! | CTGATGATGGCGTGCGAAAC+TGG | - | chr3.2:54082806-54082825 | MS.gene05576:CDS | 55.0% |
!! | GCAGTTTTCGAGGATGGCAG+TGG | + | chr3.2:54082224-54082243 | None:intergenic | 55.0% |
ACAAAGCTCGGGACGACACC+AGG | + | chr3.2:54082463-54082482 | None:intergenic | 60.0% | |
CAAAGCTCGGGACGACACCA+GGG | + | chr3.2:54082462-54082481 | None:intergenic | 60.0% | |
CAACGCGTTGAGCAGCAGGT+CGG | + | chr3.2:54082843-54082862 | None:intergenic | 60.0% | |
CTGGTTGGACAGCAAGCTGG+AGG | + | chr3.2:54083148-54083167 | None:intergenic | 60.0% | |
GCCTGTGGTGCTTGGCTTAC+CGG | - | chr3.2:54083167-54083186 | MS.gene05576:CDS | 60.0% | |
GTAAGCCAAGCACCACAGGC+TGG | + | chr3.2:54083167-54083186 | None:intergenic | 60.0% | |
TCCAACCAGCCTGTGGTGCT+TGG | - | chr3.2:54083159-54083178 | MS.gene05576:CDS | 60.0% | |
TGGCGTGTCCGTGCTAGCAA+CGG | - | chr3.2:54082673-54082692 | MS.gene05576:CDS | 60.0% | |
! | AGGCTGGTTGGACAGCAAGC+TGG | + | chr3.2:54083151-54083170 | None:intergenic | 60.0% |
! | CTTGCTGTCCAACCAGCCTG+TGG | - | chr3.2:54083152-54083171 | MS.gene05576:CDS | 60.0% |
! | GATGGCAGTGGGTTCAGGCT+CGG | + | chr3.2:54082212-54082231 | None:intergenic | 60.0% |
! | TCGAGGATGGCAGTGGGTTC+AGG | + | chr3.2:54082217-54082236 | None:intergenic | 60.0% |
CGACCTGCTGCTCAACGCGT+TGG | - | chr3.2:54082841-54082860 | MS.gene05576:CDS | 65.0% | |
GCCAAGCACCACAGGCTGGT+TGG | + | chr3.2:54083163-54083182 | None:intergenic | 65.0% | |
GCCGGTAAGCCAAGCACCAC+AGG | + | chr3.2:54083171-54083190 | None:intergenic | 65.0% | |
GTGCCAACGCGTTGAGCAGC+AGG | + | chr3.2:54082847-54082866 | None:intergenic | 65.0% | |
CGCGTTGAGCAGCAGGTCGG+AGG | + | chr3.2:54082840-54082859 | None:intergenic | 70.0% | |
GCGAGCGTATGTCGCGAGCC+TGG | - | chr3.2:54082293-54082312 | MS.gene05576:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 54082139 | 54083328 | 54082139 | ID=MS.gene05576 |
chr3.2 | mRNA | 54082139 | 54083328 | 54082139 | ID=MS.gene05576.t1;Parent=MS.gene05576 |
chr3.2 | exon | 54082256 | 54083328 | 54082256 | ID=MS.gene05576.t1.exon1;Parent=MS.gene05576.t1 |
chr3.2 | CDS | 54082256 | 54083328 | 54082256 | ID=cds.MS.gene05576.t1;Parent=MS.gene05576.t1 |
chr3.2 | exon | 54082139 | 54082154 | 54082139 | ID=MS.gene05576.t1.exon2;Parent=MS.gene05576.t1 |
chr3.2 | CDS | 54082139 | 54082154 | 54082139 | ID=cds.MS.gene05576.t1;Parent=MS.gene05576.t1 |
Gene Sequence |
Protein sequence |