AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05576


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05576.t1 MTR_3g053920 57.225 346 82 3 1 346 1 280 3.76e-126 363
MS.gene05576.t1 MTR_2g061500 80.620 129 25 0 1 129 1 129 8.63e-74 225
MS.gene05576.t1 MTR_4g103530 80.412 97 19 0 55 151 1 97 4.81e-53 174
MS.gene05576.t1 MTR_4g103530 55.224 67 30 0 251 317 119 185 2.03e-16 77.0
MS.gene05576.t1 MTR_7g011710 65.909 88 30 0 55 142 1 88 1.73e-36 130
MS.gene05576.t1 MTR_6g033215 32.749 171 113 1 31 199 124 294 3.40e-31 120
MS.gene05576.t1 MTR_0010s0370 35.955 178 102 4 8 177 4 177 2.29e-29 112
MS.gene05576.t1 MTR_0010s0350 35.955 178 102 4 8 177 4 177 2.29e-29 112
MS.gene05576.t1 MTR_1g036720 34.862 109 69 1 7 113 3 111 2.24e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05576.t1 AT2G17920 27.570 214 147 5 8 216 9 219 3.20e-17 81.6
MS.gene05576.t1 AT2G41590 29.861 144 93 3 77 216 80 219 4.29e-16 79.0
MS.gene05576.t1 AT3G31430 28.497 193 124 5 30 215 126 311 6.88e-16 78.2
MS.gene05576.t1 AT3G57587 25.366 205 142 6 77 277 80 277 1.62e-15 77.4
MS.gene05576.t1 AT5G36228 27.879 165 111 4 69 227 71 233 1.67e-14 74.3
MS.gene05576.t1 AT2G13450 27.041 196 133 5 27 215 26 218 1.92e-14 74.3
MS.gene05576.t1 AT5G25200 27.083 144 97 3 77 216 80 219 1.28e-13 71.6
MS.gene05576.t1 AT5G18636 27.083 144 97 3 77 216 80 219 1.40e-13 71.6
MS.gene05576.t1 AT2G02103 26.776 183 130 2 36 216 39 219 2.67e-13 70.9
MS.gene05576.t1 AT3G47920 26.761 142 100 2 77 216 9 148 3.14e-13 70.1

Find 106 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAAACCATATCAATTTC+TGG 0.150427 3.2:-54082960 MS.gene05576:CDS
CAGGCTCGGTTTCAAGATTA+AGG 0.191734 3.2:+54083250 None:intergenic
CTGATGATGGCGTGCGAAAC+TGG 0.221080 3.2:-54082639 MS.gene05576:CDS
AGCATCCTGTCATTGAAATT+TGG 0.246745 3.2:+54082460 None:intergenic
AACCCGTTTGACTGGCTTCC+AGG 0.249150 3.2:+54083134 None:intergenic
CGACATACGCTCGCTGAAAT+AGG 0.271549 3.2:+54083161 None:intergenic
GCCTGTGGTGCTTGGCTTAC+CGG 0.276985 3.2:-54082278 MS.gene05576:CDS
CCAGAAATTGATATGGTTTA+GGG 0.278105 3.2:+54082960 None:intergenic
CCCAGAAATTGATATGGTTT+AGG 0.288835 3.2:+54082959 None:intergenic
ATTTACTGCTGAAGGGGAAT+TGG 0.296569 3.2:-54082146 MS.gene05576:intron
TCGAGGATGGCAGTGGGTTC+AGG 0.326911 3.2:+54083231 None:intergenic
CATTCAAACCTCAACCTTGC+TGG 0.336652 3.2:-54083300 MS.gene05576:CDS
TCCTAGACCTTGACCTACTT+TGG 0.341730 3.2:+54082900 None:intergenic
CCTAGACCTTGACCTACTTT+GGG 0.343147 3.2:+54082901 None:intergenic
CTTGCACCCAGAAATTGATA+TGG 0.353017 3.2:+54082953 None:intergenic
TCACACCCAGCATGTGTGAT+AGG 0.355835 3.2:+54082250 None:intergenic
TCCAACCAGCCTGTGGTGCT+TGG 0.358282 3.2:-54082286 MS.gene05576:CDS
CTTGTTTCAGTTCCATCATA+AGG 0.363309 3.2:-54083082 MS.gene05576:CDS
TGCGACACAGTTGCTGGAAT+GGG 0.375410 3.2:+54082550 None:intergenic
TTACCTTGCGACACAGTTGC+TGG 0.378938 3.2:+54082544 None:intergenic
TGATTGCAGTTATTTGAGTT+TGG 0.383927 3.2:+54082431 None:intergenic
CAAGTCCATGGTCTGCCGTT+TGG 0.386489 3.2:-54082934 MS.gene05576:CDS
AATTGAGTTTCGGCCATCAT+AGG 0.391128 3.2:+54082855 None:intergenic
TTTACTGCTGAAGGGGAATT+GGG 0.394311 3.2:-54082145 MS.gene05576:intron
GCTCGCTGAAATAGGCAAAC+TGG 0.409343 3.2:+54083169 None:intergenic
GTGCCAACGCGTTGAGCAGC+AGG 0.416188 3.2:+54082601 None:intergenic
GTGATCGTAACCCGTTTGAC+TGG 0.416613 3.2:+54083126 None:intergenic
ATCCTCGAAAACTGCCTGAT+TGG 0.420785 3.2:-54083216 MS.gene05576:CDS
GCTTCTAATGCAACTGCTGC+AGG 0.421900 3.2:-54082496 MS.gene05576:CDS
ACAAAGCTCGGGACGACACC+AGG 0.441325 3.2:+54082985 None:intergenic
GGTATAGGTACTGGCTTCTC+TGG 0.442805 3.2:-54082364 MS.gene05576:CDS
AGGCTCGGTTTCAAGATTAA+GGG 0.445673 3.2:+54083251 None:intergenic
AGGCACTATGAATTGAGTTT+CGG 0.446170 3.2:+54082845 None:intergenic
CCTAAACCATATCAATTTCT+GGG 0.456381 3.2:-54082959 MS.gene05576:CDS
TATCTGCCTTCTTCCTCAAC+AGG 0.462139 3.2:-54082331 MS.gene05576:CDS
TGGTTTAGGGGCACAAAGCT+CGG 0.468910 3.2:+54082973 None:intergenic
GAGTTAAACCAGCAAGGTTG+AGG 0.471146 3.2:+54083292 None:intergenic
GCGAGCGTATGTCGCGAGCC+TGG 0.475977 3.2:-54083152 MS.gene05576:CDS
GGTTTAGGGGCACAAAGCTC+GGG 0.484462 3.2:+54082974 None:intergenic
GCTGTCCCTATCACACATGC+TGG 0.489213 3.2:-54082256 MS.gene05576:CDS
ACAACCACGGACCTTCATCT+AGG 0.489467 3.2:+54083043 None:intergenic
AGCCTGGAAGCCAGTCAAAC+GGG 0.491071 3.2:-54083136 MS.gene05576:CDS
GATGGCAGTGGGTTCAGGCT+CGG 0.492906 3.2:+54083236 None:intergenic
AGGCTGGTTGGACAGCAAGC+TGG 0.494235 3.2:+54082297 None:intergenic
TCATACGGACAAGGTGTGTC+CGG 0.496829 3.2:-54082680 MS.gene05576:CDS
ATGAAACAAGGTATAGGTAC+TGG 0.497665 3.2:-54082373 MS.gene05576:CDS
CAGCAAGGACACGACCAATC+AGG 0.497675 3.2:+54083202 None:intergenic
TTGCGACACAGTTGCTGGAA+TGG 0.502482 3.2:+54082549 None:intergenic
CAAAAGAGCCGTTGCTAGCA+CGG 0.508271 3.2:+54082764 None:intergenic
TGATGATGGCGTGCGAAACT+GGG 0.511419 3.2:-54082638 MS.gene05576:CDS
GAGCCTGGAAGCCAGTCAAA+CGG 0.514466 3.2:-54083137 MS.gene05576:CDS
GGTTTCATTCAACCCAAAGT+AGG 0.516836 3.2:-54082913 MS.gene05576:CDS
GTGTCCGGAGCTGTATGAAT+TGG 0.521204 3.2:-54082665 MS.gene05576:CDS
GCCGGTAAGCCAAGCACCAC+AGG 0.522732 3.2:+54082277 None:intergenic
GTTGAGGTTTGAATGATCCA+TGG 0.528657 3.2:+54083308 None:intergenic
TGGTTTAACTCTGTCTGAGG+AGG 0.532108 3.2:-54083280 MS.gene05576:CDS
CGACCTGCTGCTCAACGCGT+TGG 0.534335 3.2:-54082604 MS.gene05576:CDS
TGTCACAGGTGTGGGCTGAT+CGG 0.534419 3.2:-54082703 MS.gene05576:CDS
CATAGGACTTAAGAGTATCA+AGG 0.534944 3.2:+54082872 None:intergenic
GATACTCTTAAGTCCTATGA+TGG 0.538369 3.2:-54082868 MS.gene05576:CDS
TTGGGTTGAATGAAACCAAA+CGG 0.543919 3.2:+54082919 None:intergenic
TATGAATTGGACTCTGATGA+TGG 0.543990 3.2:-54082652 MS.gene05576:CDS
GAGTGGCATCCACCTTATGA+TGG 0.544576 3.2:+54083070 None:intergenic
CACACCCAGCATGTGTGATA+GGG 0.547973 3.2:+54082251 None:intergenic
CTGTGCCAAATTTCAATGAC+AGG 0.551379 3.2:-54082465 MS.gene05576:CDS
TGATAACTTTCATATAGCAC+TGG 0.552206 3.2:-54083019 MS.gene05576:CDS
GTGTGGGCTGATCGGTCATA+CGG 0.552665 3.2:-54082695 MS.gene05576:CDS
GCCAAGCACCACAGGCTGGT+TGG 0.553708 3.2:+54082285 None:intergenic
GCCACTCGTGTCCTAGATGA+AGG 0.553709 3.2:-54083054 MS.gene05576:CDS
GCACTGCTGCAACAAATCGT+TGG 0.554627 3.2:-54082582 MS.gene05576:CDS
AATTTCTGGGTGCAAGTCCA+TGG 0.557034 3.2:-54082946 MS.gene05576:CDS
CGCGTTGAGCAGCAGGTCGG+AGG 0.558724 3.2:+54082608 None:intergenic
CTTGCTGTCCAACCAGCCTG+TGG 0.560301 3.2:-54082293 MS.gene05576:CDS
CCCAAAGTAGGTCAAGGTCT+AGG 0.565295 3.2:-54082901 MS.gene05576:CDS
GAGTCCAATTCATACAGCTC+CGG 0.566714 3.2:+54082661 None:intergenic
TGAAACCAAACGGCAGACCA+TGG 0.572017 3.2:+54082929 None:intergenic
TGCTGGTTTAACTCTGTCTG+AGG 0.573494 3.2:-54083283 MS.gene05576:CDS
TTGAGGTTTGAATGATCCAT+GGG 0.578088 3.2:+54083309 None:intergenic
ATTCAACCCAAAGTAGGTCA+AGG 0.579948 3.2:-54082907 MS.gene05576:CDS
GGTTTAACTCTGTCTGAGGA+GGG 0.582639 3.2:-54083279 MS.gene05576:CDS
CTGTCCCTATCACACATGCT+GGG 0.583592 3.2:-54082255 MS.gene05576:intron
GTAAGCCAAGCACCACAGGC+TGG 0.583680 3.2:+54082281 None:intergenic
CAAGGTAACAACACTGCTAG+TGG 0.585119 3.2:-54082529 MS.gene05576:CDS
TGGCGTGTCCGTGCTAGCAA+CGG 0.590091 3.2:-54082772 MS.gene05576:CDS
GCGACACAGTTGCTGGAATG+GGG 0.599471 3.2:+54082551 None:intergenic
GCATGTGTGATAGGGACAGC+CGG 0.600259 3.2:+54082259 None:intergenic
GTTTCAGTTCCATCATAAGG+TGG 0.609100 3.2:-54083079 MS.gene05576:CDS
ATTGAAATTTGGCACAGCAG+CGG 0.616691 3.2:+54082471 None:intergenic
TGCCTACATGCGTATCAAAG+TGG 0.618705 3.2:-54082827 MS.gene05576:CDS
CTGGTTGGACAGCAAGCTGG+AGG 0.624541 3.2:+54082300 None:intergenic
GAATTGCCTGTTGAGGAAGA+AGG 0.624933 3.2:+54082325 None:intergenic
CAGAAATTGATATGGTTTAG+GGG 0.626997 3.2:+54082961 None:intergenic
GCTGATCGGTCATACGGACA+AGG 0.630704 3.2:-54082689 MS.gene05576:CDS
ATTCCAGCAACTGTGTCGCA+AGG 0.634655 3.2:-54082547 MS.gene05576:CDS
GATGATGGCGTGCGAAACTG+GGG 0.637383 3.2:-54082637 MS.gene05576:CDS
CAACGCGTTGAGCAGCAGGT+CGG 0.642576 3.2:+54082605 None:intergenic
GGAGGTCGAATTGCCTGTTG+AGG 0.652398 3.2:+54082318 None:intergenic
ATCCACTTTGATACGCATGT+AGG 0.663006 3.2:+54082825 None:intergenic
GGTAACAACACTGCTAGTGG+TGG 0.664668 3.2:-54082526 MS.gene05576:CDS
GCACTGGATCGTATTAACCC+TGG 0.669762 3.2:-54083003 MS.gene05576:CDS
CAGACAGAGTTAAACCAGCA+AGG 0.669821 3.2:+54083286 None:intergenic
ACTGGATTTCACGATCAGCA+AGG 0.674576 3.2:+54083187 None:intergenic
GTGTCCTAGATGAAGGTCCG+TGG 0.675720 3.2:-54083047 MS.gene05576:CDS
ACCTTCATCTAGGACACGAG+TGG 0.684214 3.2:+54083053 None:intergenic
CAAAGCTCGGGACGACACCA+GGG 0.707217 3.2:+54082986 None:intergenic
TGAAAGTTATCATACAACCA+CGG 0.735906 3.2:+54083030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CAGAAATTGATATGGTTTAG+GGG + chr3.2:54082487-54082506 None:intergenic 30.0%
CCAGAAATTGATATGGTTTA+GGG + chr3.2:54082488-54082507 None:intergenic 30.0%
CCTAAACCATATCAATTTCT+GGG - chr3.2:54082486-54082505 MS.gene05576:CDS 30.0%
GCAAAAATGAAACAAGGTAT+AGG - chr3.2:54083066-54083085 MS.gene05576:CDS 30.0%
TCTCATGATGATACTGATAT+TGG - chr3.2:54083222-54083241 MS.gene05576:CDS 30.0%
TGAAAGTTATCATACAACCA+CGG + chr3.2:54082418-54082437 None:intergenic 30.0%
TGATAACTTTCATATAGCAC+TGG - chr3.2:54082426-54082445 MS.gene05576:CDS 30.0%
! TGATTGCAGTTATTTGAGTT+TGG + chr3.2:54083017-54083036 None:intergenic 30.0%
!!! AATTAGGTGTTTTTTGTCAC+AGG - chr3.2:54082728-54082747 MS.gene05576:CDS 30.0%
!!! ACACGCCATTCTTTTTTTAA+CGG + chr3.2:54082661-54082680 None:intergenic 30.0%
ACCAATACATTTACTGCTGA+AGG - chr3.2:54083291-54083310 MS.gene05576:CDS 35.0%
AGCATCCTGTCATTGAAATT+TGG + chr3.2:54082988-54083007 None:intergenic 35.0%
AGGCACTATGAATTGAGTTT+CGG + chr3.2:54082603-54082622 None:intergenic 35.0%
ATGAAACAAGGTATAGGTAC+TGG - chr3.2:54083072-54083091 MS.gene05576:CDS 35.0%
CAATACATTTACTGCTGAAG+GGG - chr3.2:54083293-54083312 MS.gene05576:CDS 35.0%
CCAATACATTTACTGCTGAA+GGG - chr3.2:54083292-54083311 MS.gene05576:CDS 35.0%
CCCAGAAATTGATATGGTTT+AGG + chr3.2:54082489-54082508 None:intergenic 35.0%
CCCTAAACCATATCAATTTC+TGG - chr3.2:54082485-54082504 MS.gene05576:CDS 35.0%
CTTGTTTCAGTTCCATCATA+AGG - chr3.2:54082363-54082382 MS.gene05576:CDS 35.0%
GATACTCTTAAGTCCTATGA+TGG - chr3.2:54082577-54082596 MS.gene05576:CDS 35.0%
TATGAATTGGACTCTGATGA+TGG - chr3.2:54082793-54082812 MS.gene05576:CDS 35.0%
! CTGTGCCGTTAAAAAAAGAA+TGG - chr3.2:54082653-54082672 MS.gene05576:CDS 35.0%
! TGATGATACTGATATTGGCT+CGG - chr3.2:54083227-54083246 MS.gene05576:CDS 35.0%
!! ACCTTGTTTCATTTTTGCAG+CGG + chr3.2:54083064-54083083 None:intergenic 35.0%
!! CATAGGACTTAAGAGTATCA+AGG + chr3.2:54082576-54082595 None:intergenic 35.0%
!! TTGGGTTGAATGAAACCAAA+CGG + chr3.2:54082529-54082548 None:intergenic 35.0%
AATTGAGTTTCGGCCATCAT+AGG + chr3.2:54082593-54082612 None:intergenic 40.0%
ACCGCTGCAAAAATGAAACA+AGG - chr3.2:54083060-54083079 MS.gene05576:CDS 40.0%
ATCCACTTTGATACGCATGT+AGG + chr3.2:54082623-54082642 None:intergenic 40.0%
ATTCAACCCAAAGTAGGTCA+AGG - chr3.2:54082538-54082557 MS.gene05576:CDS 40.0%
ATTGAAATTTGGCACAGCAG+CGG + chr3.2:54082977-54082996 None:intergenic 40.0%
ATTTACTGCTGAAGGGGAAT+TGG - chr3.2:54083299-54083318 MS.gene05576:CDS 40.0%
CCCTTCAGCAGTAAATGTAT+TGG + chr3.2:54083295-54083314 None:intergenic 40.0%
CTGTGCCAAATTTCAATGAC+AGG - chr3.2:54082980-54082999 MS.gene05576:CDS 40.0%
CTTGCACCCAGAAATTGATA+TGG + chr3.2:54082495-54082514 None:intergenic 40.0%
GGTTTCATTCAACCCAAAGT+AGG - chr3.2:54082532-54082551 MS.gene05576:CDS 40.0%
GTTTCAGTTCCATCATAAGG+TGG - chr3.2:54082366-54082385 MS.gene05576:CDS 40.0%
TTTACTGCTGAAGGGGAATT+GGG - chr3.2:54083300-54083319 MS.gene05576:CDS 40.0%
! AGGCTCGGTTTCAAGATTAA+GGG + chr3.2:54082197-54082216 None:intergenic 40.0%
!! TTGGCTCGGAATTGAAGAAA+AGG - chr3.2:54083241-54083260 MS.gene05576:CDS 40.0%
!!! GTGTTTTTTGTCACAGGTGT+GGG - chr3.2:54082734-54082753 MS.gene05576:CDS 40.0%
ACTGGATTTCACGATCAGCA+AGG + chr3.2:54082261-54082280 None:intergenic 45.0%
ATCCTCGAAAACTGCCTGAT+TGG - chr3.2:54082229-54082248 MS.gene05576:intron 45.0%
CAAGGTAACAACACTGCTAG+TGG - chr3.2:54082916-54082935 MS.gene05576:CDS 45.0%
CAGACAGAGTTAAACCAGCA+AGG + chr3.2:54082162-54082181 None:intergenic 45.0%
CATTCAAACCTCAACCTTGC+TGG - chr3.2:54082145-54082164 MS.gene05576:intron 45.0%
CCTAGACCTTGACCTACTTT+GGG + chr3.2:54082547-54082566 None:intergenic 45.0%
GAATTGCCTGTTGAGGAAGA+AGG + chr3.2:54083123-54083142 None:intergenic 45.0%
GAGTCCAATTCATACAGCTC+CGG + chr3.2:54082787-54082806 None:intergenic 45.0%
GAGTTAAACCAGCAAGGTTG+AGG + chr3.2:54082156-54082175 None:intergenic 45.0%
GGTTTAACTCTGTCTGAGGA+GGG - chr3.2:54082166-54082185 MS.gene05576:intron 45.0%
TATCTGCCTTCTTCCTCAAC+AGG - chr3.2:54083114-54083133 MS.gene05576:CDS 45.0%
TCCTAGACCTTGACCTACTT+TGG + chr3.2:54082548-54082567 None:intergenic 45.0%
TGCCTACATGCGTATCAAAG+TGG - chr3.2:54082618-54082637 MS.gene05576:CDS 45.0%
TGGTTTAACTCTGTCTGAGG+AGG - chr3.2:54082165-54082184 MS.gene05576:intron 45.0%
! AATTTCTGGGTGCAAGTCCA+TGG - chr3.2:54082499-54082518 MS.gene05576:CDS 45.0%
! CAGGCTCGGTTTCAAGATTA+AGG + chr3.2:54082198-54082217 None:intergenic 45.0%
!! AATCAGGCAGTTTTCGAGGA+TGG + chr3.2:54082230-54082249 None:intergenic 45.0%
!! GTTTCATTTTTGCAGCGGTC+TGG + chr3.2:54083059-54083078 None:intergenic 45.0%
!! TGCTGGTTTAACTCTGTCTG+AGG - chr3.2:54082162-54082181 MS.gene05576:intron 45.0%
!!! GGTGTTTTTTGTCACAGGTG+TGG - chr3.2:54082733-54082752 MS.gene05576:CDS 45.0%
!!! AATTTTAAATATGAAAAATT+AGG - chr3.2:54082712-54082731 MS.gene05576:CDS 5.0%
ACAACCACGGACCTTCATCT+AGG + chr3.2:54082405-54082424 None:intergenic 50.0%
ATTCCAGCAACTGTGTCGCA+AGG - chr3.2:54082898-54082917 MS.gene05576:CDS 50.0%
CAAAAGAGCCGTTGCTAGCA+CGG + chr3.2:54082684-54082703 None:intergenic 50.0%
CACACCCAGCATGTGTGATA+GGG + chr3.2:54083197-54083216 None:intergenic 50.0%
CCCAAAGTAGGTCAAGGTCT+AGG - chr3.2:54082544-54082563 MS.gene05576:CDS 50.0%
CGACATACGCTCGCTGAAAT+AGG + chr3.2:54082287-54082306 None:intergenic 50.0%
CTGTCCCTATCACACATGCT+GGG - chr3.2:54083190-54083209 MS.gene05576:CDS 50.0%
GAGTGGCATCCACCTTATGA+TGG + chr3.2:54082378-54082397 None:intergenic 50.0%
GCACTGCTGCAACAAATCGT+TGG - chr3.2:54082863-54082882 MS.gene05576:CDS 50.0%
GCACTGGATCGTATTAACCC+TGG - chr3.2:54082442-54082461 MS.gene05576:CDS 50.0%
GCTCGCTGAAATAGGCAAAC+TGG + chr3.2:54082279-54082298 None:intergenic 50.0%
GCTTCTAATGCAACTGCTGC+AGG - chr3.2:54082949-54082968 MS.gene05576:CDS 50.0%
GGTAACAACACTGCTAGTGG+TGG - chr3.2:54082919-54082938 MS.gene05576:CDS 50.0%
GTGATCGTAACCCGTTTGAC+TGG + chr3.2:54082322-54082341 None:intergenic 50.0%
GTGTCCGGAGCTGTATGAAT+TGG - chr3.2:54082780-54082799 MS.gene05576:CDS 50.0%
TCACACCCAGCATGTGTGAT+AGG + chr3.2:54083198-54083217 None:intergenic 50.0%
TCATACGGACAAGGTGTGTC+CGG - chr3.2:54082765-54082784 MS.gene05576:CDS 50.0%
TGAAACCAAACGGCAGACCA+TGG + chr3.2:54082519-54082538 None:intergenic 50.0%
TGCGACACAGTTGCTGGAAT+GGG + chr3.2:54082898-54082917 None:intergenic 50.0%
TTACCTTGCGACACAGTTGC+TGG + chr3.2:54082904-54082923 None:intergenic 50.0%
TTGCGACACAGTTGCTGGAA+TGG + chr3.2:54082899-54082918 None:intergenic 50.0%
! ACCTTCATCTAGGACACGAG+TGG + chr3.2:54082395-54082414 None:intergenic 50.0%
! GACCAATCAGGCAGTTTTCG+AGG + chr3.2:54082234-54082253 None:intergenic 50.0%
! TGGTTTAGGGGCACAAAGCT+CGG + chr3.2:54082475-54082494 None:intergenic 50.0%
!! CAGTTTTCGAGGATGGCAGT+GGG + chr3.2:54082223-54082242 None:intergenic 50.0%
!! GGTATAGGTACTGGCTTCTC+TGG - chr3.2:54083081-54083100 MS.gene05576:CDS 50.0%
!! TGATGATGGCGTGCGAAACT+GGG - chr3.2:54082807-54082826 MS.gene05576:CDS 50.0%
AGCCTGGAAGCCAGTCAAAC+GGG - chr3.2:54082309-54082328 MS.gene05576:CDS 55.0%
CAAGTCCATGGTCTGCCGTT+TGG - chr3.2:54082511-54082530 MS.gene05576:CDS 55.0%
CAGCAAGGACACGACCAATC+AGG + chr3.2:54082246-54082265 None:intergenic 55.0%
GAGCCTGGAAGCCAGTCAAA+CGG - chr3.2:54082308-54082327 MS.gene05576:CDS 55.0%
GCATGTGTGATAGGGACAGC+CGG + chr3.2:54083189-54083208 None:intergenic 55.0%
GCCACTCGTGTCCTAGATGA+AGG - chr3.2:54082391-54082410 MS.gene05576:CDS 55.0%
GCGACACAGTTGCTGGAATG+GGG + chr3.2:54082897-54082916 None:intergenic 55.0%
GCTGATCGGTCATACGGACA+AGG - chr3.2:54082756-54082775 MS.gene05576:CDS 55.0%
GCTGTCCCTATCACACATGC+TGG - chr3.2:54083189-54083208 MS.gene05576:CDS 55.0%
GGAGGTCGAATTGCCTGTTG+AGG + chr3.2:54083130-54083149 None:intergenic 55.0%
GTGTCCTAGATGAAGGTCCG+TGG - chr3.2:54082398-54082417 MS.gene05576:CDS 55.0%
! GATGATGGCGTGCGAAACTG+GGG - chr3.2:54082808-54082827 MS.gene05576:CDS 55.0%
! GGTTTAGGGGCACAAAGCTC+GGG + chr3.2:54082474-54082493 None:intergenic 55.0%
! GTGTGGGCTGATCGGTCATA+CGG - chr3.2:54082750-54082769 MS.gene05576:CDS 55.0%
! TGTCACAGGTGTGGGCTGAT+CGG - chr3.2:54082742-54082761 MS.gene05576:CDS 55.0%
!! AACCCGTTTGACTGGCTTCC+AGG + chr3.2:54082314-54082333 None:intergenic 55.0%
!! CTGATGATGGCGTGCGAAAC+TGG - chr3.2:54082806-54082825 MS.gene05576:CDS 55.0%
!! GCAGTTTTCGAGGATGGCAG+TGG + chr3.2:54082224-54082243 None:intergenic 55.0%
ACAAAGCTCGGGACGACACC+AGG + chr3.2:54082463-54082482 None:intergenic 60.0%
CAAAGCTCGGGACGACACCA+GGG + chr3.2:54082462-54082481 None:intergenic 60.0%
CAACGCGTTGAGCAGCAGGT+CGG + chr3.2:54082843-54082862 None:intergenic 60.0%
CTGGTTGGACAGCAAGCTGG+AGG + chr3.2:54083148-54083167 None:intergenic 60.0%
GCCTGTGGTGCTTGGCTTAC+CGG - chr3.2:54083167-54083186 MS.gene05576:CDS 60.0%
GTAAGCCAAGCACCACAGGC+TGG + chr3.2:54083167-54083186 None:intergenic 60.0%
TCCAACCAGCCTGTGGTGCT+TGG - chr3.2:54083159-54083178 MS.gene05576:CDS 60.0%
TGGCGTGTCCGTGCTAGCAA+CGG - chr3.2:54082673-54082692 MS.gene05576:CDS 60.0%
! AGGCTGGTTGGACAGCAAGC+TGG + chr3.2:54083151-54083170 None:intergenic 60.0%
! CTTGCTGTCCAACCAGCCTG+TGG - chr3.2:54083152-54083171 MS.gene05576:CDS 60.0%
! GATGGCAGTGGGTTCAGGCT+CGG + chr3.2:54082212-54082231 None:intergenic 60.0%
! TCGAGGATGGCAGTGGGTTC+AGG + chr3.2:54082217-54082236 None:intergenic 60.0%
CGACCTGCTGCTCAACGCGT+TGG - chr3.2:54082841-54082860 MS.gene05576:CDS 65.0%
GCCAAGCACCACAGGCTGGT+TGG + chr3.2:54083163-54083182 None:intergenic 65.0%
GCCGGTAAGCCAAGCACCAC+AGG + chr3.2:54083171-54083190 None:intergenic 65.0%
GTGCCAACGCGTTGAGCAGC+AGG + chr3.2:54082847-54082866 None:intergenic 65.0%
CGCGTTGAGCAGCAGGTCGG+AGG + chr3.2:54082840-54082859 None:intergenic 70.0%
GCGAGCGTATGTCGCGAGCC+TGG - chr3.2:54082293-54082312 MS.gene05576:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 54082139 54083328 54082139 ID=MS.gene05576
chr3.2 mRNA 54082139 54083328 54082139 ID=MS.gene05576.t1;Parent=MS.gene05576
chr3.2 exon 54082256 54083328 54082256 ID=MS.gene05576.t1.exon1;Parent=MS.gene05576.t1
chr3.2 CDS 54082256 54083328 54082256 ID=cds.MS.gene05576.t1;Parent=MS.gene05576.t1
chr3.2 exon 54082139 54082154 54082139 ID=MS.gene05576.t1.exon2;Parent=MS.gene05576.t1
chr3.2 CDS 54082139 54082154 54082139 ID=cds.MS.gene05576.t1;Parent=MS.gene05576.t1
Gene Sequence

>MS.gene05576

ATGGATCATTCAAACCTCAACCTTGCTGGTTTAACTCTGTCTGAGGAGGGTCTAACCCTTAATCTTGAAACCGAGCCTGAACCCACTGCCATCCTCGAAAACTGCCTGATTGGTCGTGTCCTTGCTGATCGTGAAATCCAGTTTGCCTATTTCAGCGAGCGTATGTCGCGAGCCTGGAAGCCAGTCAAACGGGTTACGATCACGAAATCTATTGCAGATCGTTTCTTGTTTCAGTTCCATCATAAGGTGGATGCCACTCGTGTCCTAGATGAAGGTCCGTGGTTGTATGATAACTTTCATATAGCACTGGATCGTATTAACCCTGGTGTCGTCCCGAGCTTTGTGCCCCTAAACCATATCAATTTCTGGGTGCAAGTCCATGGTCTGCCGTTTGGTTTCATTCAACCCAAAGTAGGTCAAGGTCTAGGAAGTTTCCTTGATACTCTTAAGTCCTATGATGGCCGAAACTCAATTCATAGTGCCTACATGCGTATCAAAGTGGATGTTGATGTTACTGTGCCGTTAAAAAAAGAATGGCGTGTCCGTGCTAGCAACGGCTCTTTTGTGACTGTTAATTTTAAATATGAAAAATTAGGTGTTTTTTGTCACAGGTGTGGGCTGATCGGTCATACGGACAAGGTGTGTCCGGAGCTGTATGAATTGGACTCTGATGATGGCGTGCGAAACTGGGGAATTTACCTCCGACCTGCTGCTCAACGCGTTGGCACTGCTGCAACAAATCGTTGGCTTCAAGACCCCATTCCAGCAACTGTGTCGCAAGGTAACAACACTGCTAGTGGTGGCTTTGATGCTTCTAATGCAACTGCTGCAGGTGCCGCTGCTGTGCCAAATTTCAATGACAGGATGCTTGCTGTCCAAACTCAAATAACTGCAATCAAGCATGACATGCTCGCTGTCCAGACCGCTGCAAAAATGAAACAAGGTATAGGTACTGGCTTCTCTGGTAAACTGCACTATCTGCCTTCTTCCTCAACAGGCAATTCGACCTCCAGCTTGCTGTCCAACCAGCCTGTGGTGCTTGGCTTACCGGCTGTCCCTATCACACATGCTGGGTGTGATGAATCTCATGATGATACTGATATTGGCTCGGAATTGAAGAAAAGGAAACAGATGCTGAACATTCAGAATGCTACCAATACATTTACTGCTGAAGGGGAATTGGGAAATAA

Protein sequence

>MS.gene05576.t1

MDHSNLNLAGLTLSEEGLTLNLETEPEPTAILENCLIGRVLADREIQFAYFSERMSRAWKPVKRVTITKSIADRFLFQFHHKVDATRVLDEGPWLYDNFHIALDRINPGVVPSFVPLNHINFWVQVHGLPFGFIQPKVGQGLGSFLDTLKSYDGRNSIHSAYMRIKVDVDVTVPLKKEWRVRASNGSFVTVNFKYEKLGVFCHRCGLIGHTDKVCPELYELDSDDGVRNWGIYLRPAAQRVGTAATNRWLQDPIPATVSQGNNTASGGFDASNATAAGAAAVPNFNDRMLAVQTQITAIKHDMLAVQTAAKMKQGIGTGFSGKLHYLPSSSTGNSTSSLLSNQPVVLGLPAVPITHAGGIGK