AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGGTTGGGCGAATTAAAT+TGG 0.145921 8.1:+24088939 None:intergenic
CCCTCATGCTTCAACTTTCA+TGG 0.238566 8.1:-24088893 MS.gene60390:CDS
GTCGTTCAACAACGCAATTC+CGG 0.281101 8.1:-24089135 MS.gene60390:CDS
GTCACCCAATGTAACCGTTT+TGG 0.289220 8.1:+24088975 None:intergenic
TAACCATCTTGAACCTTTGC+CGG 0.323890 8.1:+24089116 None:intergenic
CTTCCTCATCACTCAGATAT+AGG 0.346648 8.1:+24089823 None:intergenic
ATTACCATTCAGATCATTCC+TGG 0.353508 8.1:+24088828 None:intergenic
TTCTGATGAACCTTAACTAA+TGG 0.354381 8.1:+24089066 None:intergenic
GCTTTCGCTTCAGCAATTCA+TGG 0.356590 8.1:-24087887 MS.gene60390:CDS
CCTGGACCGTTTCAAGTTTG+TGG 0.360223 8.1:+24088846 None:intergenic
CTGGTAGGCAGATTCCTTAC+AGG 0.366459 8.1:-24089741 MS.gene60390:intron
CACTGATACGAGCGCAAGTC+TGG 0.408042 8.1:-24089760 MS.gene60390:CDS
GCAAAGGTTCAAGATGGTTA+AGG 0.415876 8.1:-24089113 MS.gene60390:CDS
CTCGTATCAGTGGAGGAATT+AGG 0.418541 8.1:+24089771 None:intergenic
TGAATGGGAATTTATTGTCT+TGG 0.419521 8.1:+24089005 None:intergenic
ACGGTTGGGCGAATTAAATT+GGG 0.439087 8.1:+24088940 None:intergenic
CCCTCACAGGTTTACCTGTA+AGG 0.442012 8.1:+24089727 None:intergenic
TGCTCCCAAAACGGTTACAT+TGG 0.442203 8.1:-24088980 MS.gene60390:CDS
TGTTGAACGACTCTTAGTTC+AGG 0.444781 8.1:+24089147 None:intergenic
TGATGATGGAGTTCGCCATT+GGG 0.453160 8.1:-24089172 MS.gene60390:CDS
CTGGTCATCGCCATTAGTTA+AGG 0.454362 8.1:-24089076 MS.gene60390:CDS
CAAAGGTTCAAGATGGTTAA+GGG 0.462843 8.1:-24089112 MS.gene60390:CDS
CCACAAACTTGAAACGGTCC+AGG 0.473081 8.1:-24088846 MS.gene60390:CDS
CTGATGATGGAGTTCGCCAT+TGG 0.479009 8.1:-24089173 MS.gene60390:CDS
TGTGTTTATTGCTCACGGTT+GGG 0.481832 8.1:+24088926 None:intergenic
GTGTGTTTATTGCTCACGGT+TGG 0.485024 8.1:+24088925 None:intergenic
CCATTCAATTGCTCCCAAAA+CGG 0.488342 8.1:-24088989 MS.gene60390:CDS
GCTCCCAAAACGGTTACATT+GGG 0.492269 8.1:-24088979 MS.gene60390:CDS
TGTGGCATTCGCCATGGGAC+CGG 0.504038 8.1:+24087915 None:intergenic
CAACAACGCAATTCCGGCAA+AGG 0.504305 8.1:-24089129 MS.gene60390:CDS
TCATCTTGCTGACTCATCTC+AGG 0.506696 8.1:-24088803 MS.gene60390:CDS
TATTCTGTTGAAGCTGATGA+TGG 0.507119 8.1:-24089186 MS.gene60390:intron
TAAGGGAGGACGGCCAAGAC+TGG 0.510281 8.1:-24089095 MS.gene60390:CDS
CTAATGGCGATGACCAGTCT+TGG 0.526517 8.1:+24089082 None:intergenic
CCATGAAAGTTGAAGCATGA+GGG 0.553127 8.1:+24088893 None:intergenic
TTCAGACAGATCCGGTCCCA+TGG 0.568713 8.1:-24087926 MS.gene60390:intron
ATGTGTGTGTTTATTGCTCA+CGG 0.574667 8.1:+24088921 None:intergenic
TGATCTTGAGATTGCAATCG+AGG 0.576230 8.1:-24089799 MS.gene60390:CDS
CAGACTTGCGCTCGTATCAG+TGG 0.578627 8.1:+24089761 None:intergenic
CGGTCCAGGAATGATCTGAA+TGG 0.580015 8.1:-24088832 MS.gene60390:CDS
CTTGTGTGTGGCATTCGCCA+TGG 0.584412 8.1:+24087909 None:intergenic
ATTCCGGCAAAGGTTCAAGA+TGG 0.587810 8.1:-24089119 MS.gene60390:CDS
TTGTGTGTGGCATTCGCCAT+GGG 0.588491 8.1:+24087910 None:intergenic
GATACGAGCGCAAGTCTGGT+AGG 0.607548 8.1:-24089756 MS.gene60390:CDS
AAAGTCGACACAAGTTCCGC+CGG 0.610120 8.1:-24089045 MS.gene60390:CDS
TCAAGATGGTTAAGGGAGGA+CGG 0.613953 8.1:-24089105 MS.gene60390:CDS
TCCATGAAAGTTGAAGCATG+AGG 0.619951 8.1:+24088892 None:intergenic
CATGAAAGTTGAAGCATGAG+GGG 0.623455 8.1:+24088894 None:intergenic
CTCTTAGTTCAGGACCCCAA+TGG 0.632289 8.1:+24089157 None:intergenic
GGCGTGATTACTGACTTCAT+GGG 0.647194 8.1:+24088775 None:intergenic
AAACCTATATCTGAGTGATG+AGG 0.653560 8.1:-24089826 MS.gene60390:CDS
GATGATGGAGTTCGCCATTG+GGG 0.654076 8.1:-24089171 MS.gene60390:CDS
ACTTGCGCTCGTATCAGTGG+AGG 0.676334 8.1:+24089764 None:intergenic
GTGATTACTGACTTCATGGG+AGG 0.686319 8.1:+24088778 None:intergenic
AGGTTCAAGATGGTTAAGGG+AGG 0.708166 8.1:-24089109 MS.gene60390:CDS
CTGAAGCGAAAGCTTGTGTG+TGG 0.708814 8.1:+24087897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGGTTATTATCAAAATACCA+AGG + chr8.1:24088152-24088171 None:intergenic 25.0%
! ATGCAAACCATATTGAATAA+AGG - chr8.1:24088125-24088144 MS.gene60390:intron 25.0%
!! ATTTTCTTCTGTCTTTTAAG+AGG + chr8.1:24088401-24088420 None:intergenic 25.0%
!! TAACTTTATAGGAGACTTTT+TGG - chr8.1:24088301-24088320 MS.gene60390:intron 25.0%
!!! GTCGAACAATCATTTTTTAT+TGG - chr8.1:24089054-24089073 MS.gene60390:CDS 25.0%
!!! TTTTTTCCACAAACTTGAAA+CGG - chr8.1:24088867-24088886 MS.gene60390:CDS 25.0%
AATTTGAATGTGAAGAGGTT+TGG + chr8.1:24088089-24088108 None:intergenic 30.0%
ATCTTTCTCCAGTAGATAAA+AGG - chr8.1:24089529-24089548 MS.gene60390:intron 30.0%
GAATTTCTGATATACCAGTA+GGG - chr8.1:24088246-24088265 MS.gene60390:intron 30.0%
GCTTATTTCAGTTCCATTAT+GGG - chr8.1:24088220-24088239 MS.gene60390:intron 30.0%
GGAAAAATTTGAATGTGAAG+AGG + chr8.1:24088094-24088113 None:intergenic 30.0%
TAAGAGGTTTAGTAACATCT+AGG + chr8.1:24088385-24088404 None:intergenic 30.0%
TCAAAAAGGATAACAATGTC+CGG + chr8.1:24089195-24089214 None:intergenic 30.0%
TCTTTCTCCAGTAGATAAAA+GGG - chr8.1:24089530-24089549 MS.gene60390:intron 30.0%
TGAATGGGAATTTATTGTCT+TGG + chr8.1:24088717-24088736 None:intergenic 30.0%
TGCTGCATAAAGTTTCAAAA+AGG + chr8.1:24089209-24089228 None:intergenic 30.0%
TTATATGATGACATCGATCA+TGG - chr8.1:24088016-24088035 MS.gene60390:intron 30.0%
TTCTGATGAACCTTAACTAA+TGG + chr8.1:24088656-24088675 None:intergenic 30.0%
! CATAATGGAACTGAAATAAG+CGG + chr8.1:24088221-24088240 None:intergenic 30.0%
! CTAAGTTTGAAGTATTCCAT+TGG - chr8.1:24089240-24089259 MS.gene60390:intron 30.0%
! GGGAATTTTTGTTACTATTG+CGG - chr8.1:24088473-24088492 MS.gene60390:intron 30.0%
! TCAATATGGTTTGCATATCA+CGG + chr8.1:24088121-24088140 None:intergenic 30.0%
AAAAATGATTGTTCGACGAC+CGG + chr8.1:24089051-24089070 None:intergenic 35.0%
AAAATTCCCCAATCGTTCAT+AGG + chr8.1:24088462-24088481 None:intergenic 35.0%
AAACCTATATCTGAGTGATG+AGG - chr8.1:24087893-24087912 MS.gene60390:CDS 35.0%
AAAGTGGTGATCAAAACCAA+TGG + chr8.1:24089259-24089278 None:intergenic 35.0%
AAATAAGCGGAATACTCTGT+GGG + chr8.1:24088208-24088227 None:intergenic 35.0%
AAGGATCTCGGTAACTTTAT+AGG - chr8.1:24088290-24088309 MS.gene60390:intron 35.0%
ACAGAAGAAAATTAAGCGTC+CGG - chr8.1:24088409-24088428 MS.gene60390:intron 35.0%
ACTATCAATGCTCTTAAACC+AGG + chr8.1:24089652-24089671 None:intergenic 35.0%
AGATGAATTGGATGACTCTT+TGG + chr8.1:24088981-24089000 None:intergenic 35.0%
ATGTGTGTGTTTATTGCTCA+CGG + chr8.1:24088801-24088820 None:intergenic 35.0%
ATTACCATTCAGATCATTCC+TGG + chr8.1:24088894-24088913 None:intergenic 35.0%
ATTAGACATAGGTGCAACAA+GGG + chr8.1:24089757-24089776 None:intergenic 35.0%
CAAAGGTTCAAGATGGTTAA+GGG - chr8.1:24088607-24088626 MS.gene60390:intron 35.0%
CCAAGGTCCTTTATTCAATA+TGG + chr8.1:24088135-24088154 None:intergenic 35.0%
CCATATTGAATAAAGGACCT+TGG - chr8.1:24088132-24088151 MS.gene60390:intron 35.0%
CGAATTTCTGATATACCAGT+AGG - chr8.1:24088245-24088264 MS.gene60390:intron 35.0%
CGCTTATTTCAGTTCCATTA+TGG - chr8.1:24088219-24088238 MS.gene60390:intron 35.0%
CTTTCTCCAGTAGATAAAAG+GGG - chr8.1:24089531-24089550 MS.gene60390:intron 35.0%
GCTATGACATTCATGACTTT+CGG + chr8.1:24089102-24089121 None:intergenic 35.0%
GTGATGCTTCAAAAAATGTC+CGG - chr8.1:24089029-24089048 MS.gene60390:CDS 35.0%
TATTCTGTTGAAGCTGATGA+TGG - chr8.1:24088533-24088552 MS.gene60390:intron 35.0%
TCAGAAATTCGAACCCATAA+TGG + chr8.1:24088236-24088255 None:intergenic 35.0%
TGATATACCAGTAGGGTTTA+TGG - chr8.1:24088253-24088272 MS.gene60390:intron 35.0%
TGCTCTTAAACCAGGTAAAT+TGG + chr8.1:24089644-24089663 None:intergenic 35.0%
! AATGAGCAGAATTTTGCCAT+AGG + chr8.1:24089320-24089339 None:intergenic 35.0%
!!! CACTTTTCTGTTGATAGCAT+CGG - chr8.1:24089273-24089292 MS.gene60390:intron 35.0%
AAACCACGGATAAGCCATAA+TGG + chr8.1:24089570-24089589 None:intergenic 40.0%
AAGTCATGAATGTCATAGCC+TGG - chr8.1:24089103-24089122 MS.gene60390:CDS 40.0%
AAGTCTCCTATAACACACCA+AGG + chr8.1:24089501-24089520 None:intergenic 40.0%
AATAAGCGGAATACTCTGTG+GGG + chr8.1:24088207-24088226 None:intergenic 40.0%
ACGGTTGGGCGAATTAAATT+GGG + chr8.1:24088782-24088801 None:intergenic 40.0%
AGGGTTTATGGCAGAAAAAG+TGG - chr8.1:24088265-24088284 MS.gene60390:intron 40.0%
AGGGTTTGAAGAGATGCTTT+AGG + chr8.1:24089738-24089757 None:intergenic 40.0%
ATAAGCCATAATGGTCGATC+TGG + chr8.1:24089561-24089580 None:intergenic 40.0%
ATGGAAGACGACATCAATCT+TGG - chr8.1:24089439-24089458 MS.gene60390:intron 40.0%
CAATGTCCGGTTTATAGACA+CGG + chr8.1:24089182-24089201 None:intergenic 40.0%
CAGAAGAAAATTAAGCGTCC+GGG - chr8.1:24088410-24088429 MS.gene60390:intron 40.0%
CATGAAAGTTGAAGCATGAG+GGG + chr8.1:24088828-24088847 None:intergenic 40.0%
CCATGAAAGTTGAAGCATGA+GGG + chr8.1:24088829-24088848 None:intergenic 40.0%
CCATTCAATTGCTCCCAAAA+CGG - chr8.1:24088730-24088749 MS.gene60390:intron 40.0%
CCTTAACATTTCCTAAGCCT+CGG + chr8.1:24089134-24089153 None:intergenic 40.0%
CGATGCTATCAACAGAAAAG+TGG + chr8.1:24089275-24089294 None:intergenic 40.0%
CTAGGAGAATGTCAAGAATC+AGG + chr8.1:24088175-24088194 None:intergenic 40.0%
CTTCCTCATCACTCAGATAT+AGG + chr8.1:24087899-24087918 None:intergenic 40.0%
GAAATAAGCGGAATACTCTG+TGG + chr8.1:24088209-24088228 None:intergenic 40.0%
GATTAGACATAGGTGCAACA+AGG + chr8.1:24089758-24089777 None:intergenic 40.0%
GCAAAGGTTCAAGATGGTTA+AGG - chr8.1:24088606-24088625 MS.gene60390:intron 40.0%
GGGTTTATGGCAGAAAAAGT+GGG - chr8.1:24088266-24088285 MS.gene60390:intron 40.0%
GGTTTATGGCAGAAAAAGTG+GGG - chr8.1:24088267-24088286 MS.gene60390:intron 40.0%
GTGATATGTCACATGAACCT+TGG - chr8.1:24089481-24089500 MS.gene60390:intron 40.0%
GTGATGCTGTGAAAGGTAAT+TGG - chr8.1:24089385-24089404 MS.gene60390:intron 40.0%
TAAATTGGCAACCCGTTAGT+GGG + chr8.1:24089629-24089648 None:intergenic 40.0%
TAACCATCTTGAACCTTTGC+CGG + chr8.1:24088606-24088625 None:intergenic 40.0%
TCCATGAAAGTTGAAGCATG+AGG + chr8.1:24088830-24088849 None:intergenic 40.0%
TCTCTTAGTGATGCTGTGAA+AGG - chr8.1:24089378-24089397 MS.gene60390:intron 40.0%
TGATCTTGAGATTGCAATCG+AGG - chr8.1:24087920-24087939 MS.gene60390:CDS 40.0%
TGGAAGACGACATCAATCTT+GGG - chr8.1:24089440-24089459 MS.gene60390:intron 40.0%
TGGGGAAGATGAAGATGAAT+TGG + chr8.1:24088993-24089012 None:intergenic 40.0%
TGTGTTTATTGCTCACGGTT+GGG + chr8.1:24088796-24088815 None:intergenic 40.0%
TGTTGAACGACTCTTAGTTC+AGG + chr8.1:24088575-24088594 None:intergenic 40.0%
TTCATCTTCATCTTCCCCAA+TGG - chr8.1:24088994-24089013 MS.gene60390:CDS 40.0%
TTCTATGGTTACCCTGACAA+TGG - chr8.1:24089420-24089439 MS.gene60390:intron 40.0%
TTGATGTTTACTCCTCTACC+CGG + chr8.1:24088056-24088075 None:intergenic 40.0%
! ATTGGATGACTCTTTGGAAG+AGG + chr8.1:24088975-24088994 None:intergenic 40.0%
! CATCGATCATGGCAGAATTT+TGG - chr8.1:24088027-24088046 MS.gene60390:intron 40.0%
! CATGAACCTTGGTGTGTTAT+AGG - chr8.1:24089492-24089511 MS.gene60390:intron 40.0%
! CATTGATAGTAGCCAAGCAA+AGG - chr8.1:24089662-24089681 MS.gene60390:intron 40.0%
! TCACCCAATGTAACCGTTTT+GGG + chr8.1:24088746-24088765 None:intergenic 40.0%
! TGACAGCATTCTGAAAACCA+CGG + chr8.1:24089584-24089603 None:intergenic 40.0%
! TGGTTTGCATATCACGGTAA+TGG + chr8.1:24088115-24088134 None:intergenic 40.0%
! TTGGATGACTCTTTGGAAGA+GGG + chr8.1:24088974-24088993 None:intergenic 40.0%
! TTTTCTGCCATAAACCCTAC+TGG + chr8.1:24088263-24088282 None:intergenic 40.0%
!! ACGGACTAGGTCTTTAATAC+TGG + chr8.1:24089163-24089182 None:intergenic 40.0%
!!! CGTTTTGGGAGCAATTGAAT+GGG + chr8.1:24088732-24088751 None:intergenic 40.0%
AAAGGAAGCCTGTCTGGATA+GGG - chr8.1:24089680-24089699 MS.gene60390:intron 45.0%
AAGAAAATTAAGCGTCCGGG+AGG - chr8.1:24088413-24088432 MS.gene60390:intron 45.0%
ACGTTGTGAAGTCTCCATTG+GGG + chr8.1:24089011-24089030 None:intergenic 45.0%
AGAAAATTAAGCGTCCGGGA+GGG - chr8.1:24088414-24088433 MS.gene60390:intron 45.0%
AGGTTCAAGATGGTTAAGGG+AGG - chr8.1:24088610-24088629 MS.gene60390:intron 45.0%
ATAAGCGGAATACTCTGTGG+GGG + chr8.1:24088206-24088225 None:intergenic 45.0%
ATTCCGGCAAAGGTTCAAGA+TGG - chr8.1:24088600-24088619 MS.gene60390:intron 45.0%
CACGGTTGGGCGAATTAAAT+TGG + chr8.1:24088783-24088802 None:intergenic 45.0%
CACGTTGTGAAGTCTCCATT+GGG + chr8.1:24089012-24089031 None:intergenic 45.0%
CATGTATGACCTGAGGTGAT+TGG + chr8.1:24088348-24088367 None:intergenic 45.0%
CCCTCATGCTTCAACTTTCA+TGG - chr8.1:24088826-24088845 MS.gene60390:CDS 45.0%
CCGAGGCTTAGGAAATGTTA+AGG - chr8.1:24089131-24089150 MS.gene60390:CDS 45.0%
CCTAGTCCGTGTCTATAAAC+CGG - chr8.1:24089173-24089192 MS.gene60390:CDS 45.0%
CCTTACAGGTAAACCTGTGA+GGG - chr8.1:24087992-24088011 MS.gene60390:intron 45.0%
CGCTTCACCTATGAACGATT+GGG - chr8.1:24088452-24088471 MS.gene60390:intron 45.0%
CTCGTATCAGTGGAGGAATT+AGG + chr8.1:24087951-24087970 None:intergenic 45.0%
CTGGTCATCGCCATTAGTTA+AGG - chr8.1:24088643-24088662 MS.gene60390:intron 45.0%
CTTACAGGTAAACCTGTGAG+GGG - chr8.1:24087993-24088012 MS.gene60390:intron 45.0%
GAAAAAGTGGGGAAGGATCT+CGG - chr8.1:24088278-24088297 MS.gene60390:intron 45.0%
GATGTCGTCTTCCATTGTCA+GGG + chr8.1:24089434-24089453 None:intergenic 45.0%
GCTCCCAAAACGGTTACATT+GGG - chr8.1:24088740-24088759 MS.gene60390:intron 45.0%
GCTTCACCTATGAACGATTG+GGG - chr8.1:24088453-24088472 MS.gene60390:intron 45.0%
GCTTTCGCTTCAGCAATTCA+TGG - chr8.1:24089832-24089851 MS.gene60390:CDS 45.0%
GGAGAATGTCAAGAATCAGG+AGG + chr8.1:24088172-24088191 None:intergenic 45.0%
GTAAATTGGCAACCCGTTAG+TGG + chr8.1:24089630-24089649 None:intergenic 45.0%
GTCAGGGTAACCATAGAATG+CGG + chr8.1:24089418-24089437 None:intergenic 45.0%
GTCATCATATAACCCCTCAC+AGG + chr8.1:24088008-24088027 None:intergenic 45.0%
GTCGTTCAACAACGCAATTC+CGG - chr8.1:24088584-24088603 MS.gene60390:intron 45.0%
GTGTGTTTATTGCTCACGGT+TGG + chr8.1:24088797-24088816 None:intergenic 45.0%
TATGGCAGAAAAAGTGGGGA+AGG - chr8.1:24088271-24088290 MS.gene60390:intron 45.0%
TCAAGATGGTTAAGGGAGGA+CGG - chr8.1:24088614-24088633 MS.gene60390:intron 45.0%
TCACGTTGTGAAGTCTCCAT+TGG + chr8.1:24089013-24089032 None:intergenic 45.0%
TCCTTACAGGTAAACCTGTG+AGG - chr8.1:24087991-24088010 MS.gene60390:intron 45.0%
TCGCTTCACCTATGAACGAT+TGG - chr8.1:24088451-24088470 MS.gene60390:intron 45.0%
TCTCCAGTAGATAAAAGGGG+AGG - chr8.1:24089534-24089553 MS.gene60390:intron 45.0%
TGACATTCATGACTTTCGGC+AGG + chr8.1:24089098-24089117 None:intergenic 45.0%
TGATCTGCATGTATGACCTG+AGG + chr8.1:24088355-24088374 None:intergenic 45.0%
TGATGTCGTCTTCCATTGTC+AGG + chr8.1:24089435-24089454 None:intergenic 45.0%
TGATGTTTACTCCTCTACCC+GGG + chr8.1:24088055-24088074 None:intergenic 45.0%
TGCTCCCAAAACGGTTACAT+TGG - chr8.1:24088739-24088758 MS.gene60390:intron 45.0%
! AGGGGAGTGTGATTAGACAT+AGG + chr8.1:24089768-24089787 None:intergenic 45.0%
! GGCGTTACTGTTTTCGATTC+CGG + chr8.1:24088696-24088715 None:intergenic 45.0%
! GTCACCCAATGTAACCGTTT+TGG + chr8.1:24088747-24088766 None:intergenic 45.0%
! GTTACTGTTTTCGATTCCGG+CGG + chr8.1:24088693-24088712 None:intergenic 45.0%
!! GGCGTGATTACTGACTTCAT+GGG + chr8.1:24088947-24088966 None:intergenic 45.0%
!! GTGATTACTGACTTCATGGG+AGG + chr8.1:24088944-24088963 None:intergenic 45.0%
!! GTTACTATTGCGGCTTGTTG+AGG - chr8.1:24088483-24088502 MS.gene60390:intron 45.0%
!! GTTGATAGCATCGGACATAG+TGG - chr8.1:24089282-24089301 MS.gene60390:intron 45.0%
!! TAACGGGTTGCCAATTTACC+TGG - chr8.1:24089631-24089650 MS.gene60390:intron 45.0%
!! TCATCTTGCTGACTCATCTC+AGG - chr8.1:24088916-24088935 MS.gene60390:CDS 45.0%
!! TGATGATGGAGTTCGCCATT+GGG - chr8.1:24088547-24088566 MS.gene60390:intron 45.0%
!! TGGCGTGATTACTGACTTCA+TGG + chr8.1:24088948-24088967 None:intergenic 45.0%
!!! CCGTTTTGGGAGCAATTGAA+TGG + chr8.1:24088733-24088752 None:intergenic 45.0%
AAAGTCGACACAAGTTCCGC+CGG - chr8.1:24088674-24088693 MS.gene60390:intron 50.0%
AACAAGAGCCCTATCCAGAC+AGG + chr8.1:24089691-24089710 None:intergenic 50.0%
ACTGTATGTGATTCCCCTCC+CGG + chr8.1:24088431-24088450 None:intergenic 50.0%
AGAACAGTGCCAATCACCTC+AGG - chr8.1:24088336-24088355 MS.gene60390:intron 50.0%
CAAAGGAAGCCTGTCTGGAT+AGG - chr8.1:24089679-24089698 MS.gene60390:intron 50.0%
CAACAACGCAATTCCGGCAA+AGG - chr8.1:24088590-24088609 MS.gene60390:intron 50.0%
CCACAAACTTGAAACGGTCC+AGG - chr8.1:24088873-24088892 MS.gene60390:CDS 50.0%
CCCTCACAGGTTTACCTGTA+AGG + chr8.1:24087995-24088014 None:intergenic 50.0%
CCGGTTTATAGACACGGACT+AGG + chr8.1:24089176-24089195 None:intergenic 50.0%
CCTTTGTGACCTCCCACTAA+CGG - chr8.1:24089614-24089633 MS.gene60390:intron 50.0%
CGACCATTATGGCTTATCCG+TGG - chr8.1:24089564-24089583 MS.gene60390:intron 50.0%
CGGTCCAGGAATGATCTGAA+TGG - chr8.1:24088887-24088906 MS.gene60390:CDS 50.0%
CTAATGGCGATGACCAGTCT+TGG + chr8.1:24088640-24088659 None:intergenic 50.0%
CTCTTAGTTCAGGACCCCAA+TGG + chr8.1:24088565-24088584 None:intergenic 50.0%
CTGAAGCGAAAGCTTGTGTG+TGG + chr8.1:24089825-24089844 None:intergenic 50.0%
CTGGTAGGCAGATTCCTTAC+AGG - chr8.1:24087978-24087997 MS.gene60390:intron 50.0%
CTTTGTGACCTCCCACTAAC+GGG - chr8.1:24089615-24089634 MS.gene60390:intron 50.0%
GAAAATTAAGCGTCCGGGAG+GGG - chr8.1:24088415-24088434 MS.gene60390:intron 50.0%
GAGGACCAGATCGACCATTA+TGG - chr8.1:24089553-24089572 MS.gene60390:intron 50.0%
GAGGTGATTGGCACTGTTCT+TGG + chr8.1:24088336-24088355 None:intergenic 50.0%
TGGCGTCTTACCGCATTCTA+TGG - chr8.1:24089405-24089424 MS.gene60390:intron 50.0%
TTGTGTGTGGCATTCGCCAT+GGG + chr8.1:24089812-24089831 None:intergenic 50.0%
! GACTCTTTGGAAGAGGGAGA+TGG + chr8.1:24088968-24088987 None:intergenic 50.0%
! GATAGCATCGGACATAGTGG+TGG - chr8.1:24089285-24089304 MS.gene60390:intron 50.0%
! GGTCCTCCCCTTTTATCTAC+TGG + chr8.1:24089540-24089559 None:intergenic 50.0%
!! ATGGCAGAATTTTGGCACCC+GGG - chr8.1:24088035-24088054 MS.gene60390:intron 50.0%
!! CATGGCAGAATTTTGGCACC+CGG - chr8.1:24088034-24088053 MS.gene60390:intron 50.0%
!! CCTGGACCGTTTCAAGTTTG+TGG + chr8.1:24088876-24088895 None:intergenic 50.0%
!! CGGCTTGTTGAGGCATATAG+AGG - chr8.1:24088493-24088512 MS.gene60390:intron 50.0%
!! CTGATGATGGAGTTCGCCAT+TGG - chr8.1:24088546-24088565 MS.gene60390:intron 50.0%
!! GATGATGGAGTTCGCCATTG+GGG - chr8.1:24088548-24088567 MS.gene60390:intron 50.0%
ACTTGCGCTCGTATCAGTGG+AGG + chr8.1:24087958-24087977 None:intergenic 55.0%
ATGGGACCGGATCTGTCTGA+AGG + chr8.1:24089794-24089813 None:intergenic 55.0%
ATTGGCAACCCGTTAGTGGG+AGG + chr8.1:24089626-24089645 None:intergenic 55.0%
ATTGGCAGAGCCTGTAGAGC+AGG - chr8.1:24089072-24089091 MS.gene60390:CDS 55.0%
CACTGATACGAGCGCAAGTC+TGG - chr8.1:24087959-24087978 MS.gene60390:intron 55.0%
CAGACTTGCGCTCGTATCAG+TGG + chr8.1:24087961-24087980 None:intergenic 55.0%
CCAAGCAAAGGAAGCCTGTC+TGG - chr8.1:24089674-24089693 MS.gene60390:intron 55.0%
CCAGACAGGCTTCCTTTGCT+TGG + chr8.1:24089677-24089696 None:intergenic 55.0%
CCGTTAGTGGGAGGTCACAA+AGG + chr8.1:24089617-24089636 None:intergenic 55.0%
CCTCCTCCTTCAGACAGATC+CGG - chr8.1:24089785-24089804 MS.gene60390:CDS 55.0%
CGGATCTGTCTGAAGGAGGA+GGG + chr8.1:24089787-24089806 None:intergenic 55.0%
CTTGTGTGTGGCATTCGCCA+TGG + chr8.1:24089813-24089832 None:intergenic 55.0%
GATACGAGCGCAAGTCTGGT+AGG - chr8.1:24087963-24087982 MS.gene60390:intron 55.0%
GGATCTGTCTGAAGGAGGAG+GGG + chr8.1:24089786-24089805 None:intergenic 55.0%
GGGCTCTTGTTAGCGTGTTG+TGG - chr8.1:24089700-24089719 MS.gene60390:intron 55.0%
TTCAGACAGATCCGGTCCCA+TGG - chr8.1:24089793-24089812 MS.gene60390:CDS 55.0%
! TCTGTGGGGGCGTATTCTCT+AGG + chr8.1:24088193-24088212 None:intergenic 55.0%
!! GAATTTTGGCACCCGGGTAG+AGG - chr8.1:24088041-24088060 MS.gene60390:intron 55.0%
CCGGATCTGTCTGAAGGAGG+AGG + chr8.1:24089788-24089807 None:intergenic 60.0%
GGACCGGATCTGTCTGAAGG+AGG + chr8.1:24089791-24089810 None:intergenic 60.0%
GTCATAGCCTGGAACTGCCG+AGG - chr8.1:24089114-24089133 MS.gene60390:CDS 60.0%
TAAGGGAGGACGGCCAAGAC+TGG - chr8.1:24088624-24088643 MS.gene60390:intron 60.0%
TCCTAAGCCTCGGCAGTTCC+AGG + chr8.1:24089124-24089143 None:intergenic 60.0%
TGTGGCATTCGCCATGGGAC+CGG + chr8.1:24089807-24089826 None:intergenic 60.0%
TTTCGGCAGGCCTGCTCTAC+AGG + chr8.1:24089085-24089104 None:intergenic 60.0%
! GTGGTGGCGTTGCTGTCCTA+TGG - chr8.1:24089301-24089320 MS.gene60390:intron 60.0%
GCCTGGAACTGCCGAGGCTT+AGG - chr8.1:24089120-24089139 MS.gene60390:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 24087879 24089862 24087879 ID=MS.gene60390
chr8.1 mRNA 24087879 24089862 24087879 ID=MS.gene60390.t1;Parent=MS.gene60390
chr8.1 exon 24089742 24089862 24089742 ID=MS.gene60390.t1.exon1;Parent=MS.gene60390.t1
chr8.1 CDS 24089742 24089862 24089742 ID=cds.MS.gene60390.t1;Parent=MS.gene60390.t1
chr8.1 exon 24088790 24089195 24088790 ID=MS.gene60390.t1.exon2;Parent=MS.gene60390.t1
chr8.1 CDS 24088790 24089195 24088790 ID=cds.MS.gene60390.t1;Parent=MS.gene60390.t1
chr8.1 exon 24087879 24087939 24087879 ID=MS.gene60390.t1.exon3;Parent=MS.gene60390.t1
chr8.1 CDS 24087879 24087939 24087879 ID=cds.MS.gene60390.t1;Parent=MS.gene60390.t1
Gene Sequence

>MS.gene60390

ATGGCATCGCTTTCAAACCTATATCTGAGTGATGAGGAAGATGATCTTGAGATTGCAATCGAGGAGACTCCTAATTCCTCCACTGATACGAGCGCAAGTCTGGTAGGCAGATTCCTTACAGGTAAACCTGTGAGGGGTTATATGATGACATCGATCATGGCAGAATTTTGGCACCCGGGTAGAGGAGTAAACATCAAAGAGATTGAACCAAACCTCTTCACATTCAAATTTTTCCATTACCGTGATATGCAAACCATATTGAATAAAGGACCTTGGTATTTTGATAATAACCTCCTGATTCTTGACATTCTCCTAGAGAATACGCCCCCACAGAGTATTCCGCTTATTTCAGTTCCATTATGGGTTCGAATTTCTGATATACCAGTAGGGTTTATGGCAGAAAAAGTGGGGAAGGATCTCGGTAACTTTATAGGAGACTTTTTGGAGTACGACGCCAAGAACAGTGCCAATCACCTCAGGTCATACATGCAGATCAGAGTGCTCCTAGATGTTACTAAACCTCTTAAAAGACAGAAGAAAATTAAGCGTCCGGGAGGGGAATCACATACAGTTCGCTTCACCTATGAACGATTGGGGAATTTTTGTTACTATTGCGGCTTGTTGAGGCATATAGAGGACTATTGTGATAAGCTCTATTCTGTTGAAGCTGATGATGGAGTTCGCCATTGGGGTCCTGAACTAAGAGTCGTTCAACAACGCAATTCCGGCAAAGGTTCAAGATGGTTAAGGGAGGACGGCCAAGACTGGTCATCGCCATTAGTTAAGGTTCATCAGAAAGTCGACACAAGTTCCGCCGGAATCGAAAACAGTAACGCCAAGACAATAAATTCCCATTCAATTGCTCCCAAAACGGTTACATTGGGTGACATGCTAAAAAATCCCAATTTAATTCGCCCAACCGTGAGCAATAAACACACACATTCATCCCCTCATGCTTCAACTTTCATGGAAGAAGAAAATGCTGCAGTTTTTTCCACAAACTTGAAACGGTCCAGGAATGATCTGAATGGTAATAATCATCTTGCTGACTCATCTCAGGTTCCTCCCATGAAGTCAGTAATCACGCCATCTCCCTCTTCCAAAGAGTCATCCAATTCATCTTCATCTTCCCCAATGGAGACTTCACAACGTGATGCTTCAAAAAATGTCCGGTCGTCGAACAATCATTTTTTATTGGCAGAGCCTGTAGAGCAGGCCTGCCGAAAGTCATGAATGTCATAGCCTGGAACTGCCGAGGCTTAGGAAATGTTAAGGCAGTTTCCAGTATTAAAGACCTAGTCCGTGTCTATAAACCGGACATTGTTATCCTTTTTGAAACTTTATGCAGCAATAATAAAATTCTAAGTTTGAAGTATTCCATTGGTTTTGATCACCACTTTTCTGTTGATAGCATCGGACATAGTGGTGGCGTTGCTGTCCTATGGCAAAATTCTGCTCATTATAATATTGTTAATTACTCTCAAAACTTTATTGATATGTCTCTTAGTGATGCTGTGAAAGGTAATTGGCGTCTTACCGCATTCTATGGTTACCCTGACAATGGAAGACGACATCAATCTTGGGAACTACTTCGTTCTCTTCGTGATATGTCACATGAACCTTGGTGTGTTATAGGAGACTTCAATGATCATCTTTCTCCAGTAGATAAAAGGGGAGGACCAGATCGACCATTATGGCTTATCCGTGGTTTTCAGAATGCTGTCAATGATTGTAACCTTTGTGACCTCCCACTAACGGGTTGCCAATTTACCTGGTTTAAGAGCATTGATAGTAGCCAAGCAAAGGAAGCCTGTCTGGATAGGGCTCTTGTTAGCGTGTTGTGGCATGATTTATTTCCTAAAGCATCTCTTCAAACCCTTGTTGCACCTATGTCTAATCACACTCCCCTCCTCCTTCAGACAGATCCGGTCCCATGGCGAATGCCACACACAAGCTTTCGCTTCAGCAATTCATGGCTTCTTGA
Protein sequence

>MS.gene60390.t1

MASLSNLYLSDEEDDLEIAIEETPNSSTDTSASLVGRFLTADDGVRHWGPELRVVQQRNSGKGSRWLREDGQDWSSPLVKVHQKVDTSSAGIENSNAKTINSHSIAPKTVTLGDMLKNPNLIRPTVSNKHTHSSPHASTFMEEENAAVFSTNLKRSRNDLNGNNHLADSSQVPPMKSGPMANATHKLSLQQFMAS