AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22200.t1 MTR_3g053920 38.235 306 119 4 8 313 3 238 2.30e-64 214
MS.gene22200.t1 MTR_2g061500 54.331 127 58 0 8 134 3 129 6.05e-44 154
MS.gene22200.t1 MTR_6g033215 34.706 170 109 1 36 203 124 293 2.13e-34 133
MS.gene22200.t1 MTR_8g006720 50.000 126 28 2 501 591 1 126 4.83e-32 125
MS.gene22200.t1 MTR_0010s0370 38.255 149 88 2 37 182 30 177 1.52e-30 119
MS.gene22200.t1 MTR_0010s0350 38.255 149 88 2 37 182 30 177 1.52e-30 119
MS.gene22200.t1 MTR_4g103530 56.180 89 39 0 64 152 5 93 2.20e-30 118
MS.gene22200.t1 MTR_7g451250 63.855 83 30 0 557 639 1 83 4.97e-29 115
MS.gene22200.t1 MTR_1g046130 43.119 109 61 1 531 639 1 108 3.64e-27 114
MS.gene22200.t1 MTR_7g011710 46.847 111 50 1 60 161 1 111 1.02e-25 103
MS.gene22200.t1 MTR_8g028510 38.255 149 58 3 480 611 72 203 6.21e-25 103
MS.gene22200.t1 MTR_6g033560 40.789 152 70 3 436 570 42 190 7.58e-25 108
MS.gene22200.t1 MTR_7g028230 36.667 180 63 4 468 639 15 151 1.84e-24 100
MS.gene22200.t1 MTR_1g096730 40.000 100 60 0 527 626 18 117 3.22e-20 89.0
MS.gene22200.t1 MTR_2g079840 51.316 76 37 0 564 639 1 76 7.59e-19 88.2
MS.gene22200.t1 MTR_4g094272 69.388 49 15 0 553 601 2 50 3.01e-17 79.3
MS.gene22200.t1 MTR_5g070140 44.086 93 33 1 547 639 1 74 3.50e-17 79.7
MS.gene22200.t1 MTR_8g463110 59.677 62 25 0 578 639 594 655 7.55e-17 84.7
MS.gene22200.t1 MTR_7g056813 40.000 115 38 1 497 580 225 339 8.49e-17 83.2
MS.gene22200.t1 MTR_0607s0040 54.688 64 29 0 564 627 1 64 4.23e-16 77.8
MS.gene22200.t1 MTR_2g084625 48.421 95 37 4 437 519 234 328 5.75e-15 77.0
MS.gene22200.t1 MTR_7g446150 52.727 55 26 0 576 630 1 55 1.54e-13 68.2
MS.gene22200.t1 MTR_7g093920 56.863 51 22 0 531 581 1 51 2.53e-13 65.1
MS.gene22200.t1 MTR_4g415270 46.774 62 33 0 576 637 1 62 3.26e-13 70.1
MS.gene22200.t1 MTR_4g008360 31.858 113 42 1 478 555 31 143 4.23e-13 70.5
MS.gene22200.t1 MTR_7g089990 37.963 108 63 2 111 214 86 193 8.12e-13 68.6
MS.gene22200.t1 MTR_1g069475 52.308 65 28 1 543 604 29 93 1.05e-12 68.9
MS.gene22200.t1 MTR_1g036720 35.897 78 50 0 41 118 34 111 1.07e-12 65.5
MS.gene22200.t1 MTR_2g011740 54.000 50 23 0 576 625 1 50 2.23e-12 63.9
MS.gene22200.t1 MTR_7g066610 60.465 43 17 0 480 522 79 121 2.99e-12 64.3
MS.gene22200.t1 MTR_7g045850 43.023 86 30 2 501 586 1 67 8.93e-12 61.2
MS.gene22200.t1 MTR_6g029540 49.153 59 27 1 523 581 22 77 2.31e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22200.t1 AT4G29090 40.777 103 61 0 537 639 29 131 1.23e-23 105
MS.gene22200.t1 AT5G36228 25.641 156 112 2 78 231 76 229 9.38e-15 76.6
MS.gene22200.t1 AT3G31430 27.586 145 99 3 78 220 171 311 2.66e-11 65.9

Find 198 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGACAGAGCTGGAAAATT+TGG 0.215055 3.4:-40587094 MS.gene22200:intron
ATCCTGAAGGCTGGGCTAAT+TGG 0.238373 3.4:-40588125 MS.gene22200:CDS
CATCGAGACGATGGTTAAAT+TGG 0.243511 3.4:+40588826 None:intergenic
CGTAACGACGCTAGCTGTTC+GGG 0.245382 3.4:+40586778 None:intergenic
CAGGTTCACAATCTTCCATT+TGG 0.260197 3.4:-40588684 MS.gene22200:CDS
GTTGAGATTCATTGGAGATT+TGG 0.273896 3.4:+40589058 None:intergenic
CCATGCCACCGTAACTCTTA+TGG 0.285853 3.4:+40585184 None:intergenic
AGAAACAAACAGGCAACTTT+TGG 0.287629 3.4:-40585450 MS.gene22200:CDS
CCCCGTGTTGCTCAAGCTAT+TGG 0.288689 3.4:-40588651 MS.gene22200:CDS
TGGTTAAGTGCTACGTCATT+AGG 0.296349 3.4:+40588723 None:intergenic
AGTGAGGATCCGTTGTTTGC+TGG 0.299867 3.4:-40588069 MS.gene22200:CDS
TTGAGATTCATTGGAGATTT+GGG 0.310812 3.4:+40589059 None:intergenic
CAATTCTGCCTGCTGCTAAA+AGG 0.313019 3.4:-40588860 MS.gene22200:CDS
TGTGCCTGTGGCTGAATTAA+TGG 0.320298 3.4:-40587878 MS.gene22200:CDS
GGATCTTAAGACCCGGCTTA+TGG 0.324869 3.4:-40588154 MS.gene22200:CDS
CCCGTGTTGCTCAAGCTATT+GGG 0.329124 3.4:-40588650 MS.gene22200:CDS
CATTCAATGTTGAGATTCAT+TGG 0.330310 3.4:+40589050 None:intergenic
GTGGCTGAATTAATGGATAC+TGG 0.330387 3.4:-40587871 MS.gene22200:CDS
AAAGAATAATAAACGCATTC+AGG 0.335136 3.4:-40585269 MS.gene22200:CDS
CACTTAACCATCTGGACATA+TGG 0.364122 3.4:-40588710 MS.gene22200:CDS
TCTGGCAGCGCATTCATTCT+TGG 0.365477 3.4:-40585410 MS.gene22200:CDS
AGGTTCACAATCTTCCATTT+GGG 0.365864 3.4:-40588683 MS.gene22200:CDS
GCGAAAGGCTGGGCAATCTT+TGG 0.372719 3.4:-40588902 MS.gene22200:CDS
GGCATAGAGGAGCAACTAAC+CGG 0.377156 3.4:-40585242 MS.gene22200:CDS
GTACCACCAGACATTGCATT+TGG 0.379538 3.4:+40588234 None:intergenic
TGCTGCTGGTCATGGCTTTG+AGG 0.382021 3.4:-40587968 MS.gene22200:CDS
TGCTTATCTGAGCGAAAGGC+TGG 0.383330 3.4:-40588913 MS.gene22200:CDS
AACGGAGCACTATGTTGTTC+AGG 0.387211 3.4:+40588276 None:intergenic
CTGTTTGTTTCTACCAATCA+TGG 0.392646 3.4:+40585461 None:intergenic
GTGAGGATCCGTTGTTTGCT+GGG 0.399207 3.4:-40588068 MS.gene22200:CDS
GATATATTAAGGATCGAATC+TGG 0.399890 3.4:-40585428 MS.gene22200:CDS
TGGATGCATAAGGGTATTGC+TGG 0.400354 3.4:-40588105 MS.gene22200:CDS
CTGGGCTAATTGGATGCATA+AGG 0.415421 3.4:-40588115 MS.gene22200:CDS
ACGTAACGACGCTAGCTGTT+CGG 0.415497 3.4:+40586777 None:intergenic
ATTCTCGACCACTGTCTGAT+TGG 0.415752 3.4:-40588966 MS.gene22200:CDS
CAAGCTATTGGGGCATATCT+TGG 0.421471 3.4:-40588639 MS.gene22200:CDS
GGTTAAGTGCTACGTCATTA+GGG 0.424109 3.4:+40588724 None:intergenic
CGAGTCTGAAACCATCTTCT+CGG 0.424694 3.4:-40588362 MS.gene22200:CDS
GTGAACTTTCAGCATCATAA+AGG 0.426094 3.4:+40588575 None:intergenic
CCTCGGGACAGGCAAATACT+TGG 0.426851 3.4:-40585493 MS.gene22200:CDS
CAACTAACCGGGGACTTCAT+TGG 0.427138 3.4:-40585230 MS.gene22200:CDS
TGGAGGCTGATCCTGAAGGC+TGG 0.429230 3.4:-40588134 MS.gene22200:CDS
GGCACACCCTCTTCAGCAAT+TGG 0.429557 3.4:+40587895 None:intergenic
ATCTTTGGCAACCAGTGAAA+GGG 0.429785 3.4:-40588887 MS.gene22200:CDS
CAATGAATCTCAACATTGAA+TGG 0.434056 3.4:-40589049 MS.gene22200:CDS
ATCATCTGCTGGAAAACATC+TGG 0.444535 3.4:-40588040 MS.gene22200:CDS
GAATATGCTGCTGCTGGTCA+TGG 0.447735 3.4:-40587976 MS.gene22200:CDS
TTGACAGCAGCTCGTGTAAA+CGG 0.449393 3.4:+40588258 None:intergenic
GACTCTGATGATGGTGTAAG+AGG 0.449795 3.4:-40588393 MS.gene22200:CDS
CGCGGCGCACGATGGAGTAT+TGG 0.453677 3.4:-40584964 MS.gene22200:CDS
TAGGTACTGCTGCAACCAAT+AGG 0.454373 3.4:-40588335 MS.gene22200:CDS
GAATGGCTCACTTTGGAAGA+AGG 0.457247 3.4:-40589032 MS.gene22200:CDS
CAACATTGAATGGCTCACTT+TGG 0.457514 3.4:-40589039 MS.gene22200:CDS
ATCCAATTAGCCCAGCCTTC+AGG 0.458728 3.4:+40588123 None:intergenic
TCGACCACTGTCTGATTGGA+CGG 0.458952 3.4:-40588962 MS.gene22200:CDS
GGGGACTTCATTGGCTGTCA+TGG 0.459308 3.4:-40585221 MS.gene22200:CDS
CTCGGCGTGCAAGCAGTCCT+CGG 0.461518 3.4:-40585510 MS.gene22200:CDS
AGGATCACGCAGCCACCTAT+TGG 0.463715 3.4:+40588320 None:intergenic
CGCTTCTCCAATTGCTGAAG+AGG 0.464177 3.4:-40587902 MS.gene22200:CDS
GCACTAGTCTGAGCAGAATA+GGG 0.466040 3.4:+40587049 None:intergenic
CATGATTGGTAGAAACAAAC+AGG 0.466162 3.4:-40585460 MS.gene22200:CDS
GTACCAACCCGAGCTATGTC+TGG 0.466417 3.4:-40585020 MS.gene22200:CDS
TGCAGTTCATTCTGAAATCA+AGG 0.468055 3.4:-40588175 MS.gene22200:CDS
CAGCAGCATCAGTGTTCTCC+AGG 0.468371 3.4:+40588994 None:intergenic
GCATAAGGGTATTGCTGGAC+AGG 0.475645 3.4:-40588100 MS.gene22200:CDS
CTATGCTTGGTAAACAAGCT+TGG 0.477439 3.4:-40585131 MS.gene22200:CDS
CAGGATCAGCCTCCATAAGC+CGG 0.477526 3.4:+40588142 None:intergenic
TGACGTAGCACTTAACCATC+TGG 0.478536 3.4:-40588718 MS.gene22200:CDS
TGCTGGAAAACATCTGGTGT+TGG 0.479589 3.4:-40588034 MS.gene22200:CDS
GTACCTAGTTTCCGAGAAGA+TGG 0.482783 3.4:+40588351 None:intergenic
GCCGCCAACGTGATGAAGGA+TGG 0.482989 3.4:-40588804 MS.gene22200:CDS
TGAGGGCTCGTAATAGTGAA+TGG 0.484917 3.4:-40588515 MS.gene22200:CDS
CGTACACCACGTATAACTTT+CGG 0.485449 3.4:+40587027 None:intergenic
TCTTTAAGTACGAAAGGCTC+TGG 0.489697 3.4:-40588482 MS.gene22200:CDS
TTACGGTGGCATGGGATTCA+AGG 0.490773 3.4:-40585175 MS.gene22200:CDS
GGCACTAGTCTGAGCAGAAT+AGG 0.494669 3.4:+40587048 None:intergenic
TTGGGGCTACCCTCCATGAT+TGG 0.494785 3.4:-40585474 MS.gene22200:CDS
TCGGCGTGCAAGCAGTCCTC+GGG 0.495669 3.4:-40585509 MS.gene22200:CDS
CCCAATAGCTTGAGCAACAC+GGG 0.496294 3.4:+40588650 None:intergenic
TGTCACACAACCGCTCAAAC+AGG 0.498246 3.4:-40588547 MS.gene22200:CDS
AAATTTGGTTTCTCATTCGT+CGG 0.499637 3.4:-40587079 MS.gene22200:CDS
CGGGGTTGAATGAACCCAAA+TGG 0.501768 3.4:+40588669 None:intergenic
AAACCATCTTCTCGGAAACT+AGG 0.502168 3.4:-40588354 MS.gene22200:CDS
TGACAACAAAGTTTAAGAAA+AGG 0.502304 3.4:-40587942 MS.gene22200:CDS
GCTCTTGAATATGCTGCTGC+TGG 0.502806 3.4:-40587982 MS.gene22200:CDS
GTGCAAGCAGTCCTCGGGAC+AGG 0.503837 3.4:-40585504 MS.gene22200:CDS
GCACGATGGAGTATTGGAAC+AGG 0.504084 3.4:-40584958 MS.gene22200:intron
GGATCCGTTGTTTGCTGGGG+CGG 0.506093 3.4:-40588064 MS.gene22200:CDS
CGACCACTGTCTGATTGGAC+GGG 0.510608 3.4:-40588961 MS.gene22200:CDS
AGAATTGTAACCCCTTTCAC+TGG 0.510742 3.4:+40588876 None:intergenic
GCTGGGGCGGAATCATCTGC+TGG 0.511566 3.4:-40588051 MS.gene22200:CDS
CGATGCCGCCAACGTGATGA+AGG 0.513585 3.4:-40588808 MS.gene22200:CDS
GCTGGAAAACATCTGGTGTT+GGG 0.514154 3.4:-40588033 MS.gene22200:CDS
CACAACCGCTCAAACAGGAT+TGG 0.514170 3.4:-40588542 MS.gene22200:CDS
ACTGAGATGGTTATCCTTGG+TGG 0.514198 3.4:-40588207 MS.gene22200:CDS
CTCGGGACAGGCAAATACTT+GGG 0.514586 3.4:-40585492 MS.gene22200:CDS
ACCACGCTTACACAAATTCT+CGG 0.515232 3.4:-40585528 MS.gene22200:CDS
CCCATCCTTCATCACGTTGG+CGG 0.518243 3.4:+40588803 None:intergenic
GTCAATCCAAATGCAATGTC+TGG 0.519396 3.4:-40588240 MS.gene22200:CDS
CCATAAGAGTTACGGTGGCA+TGG 0.519690 3.4:-40585184 MS.gene22200:CDS
TGGCTGAATTAATGGATACT+GGG 0.522184 3.4:-40587870 MS.gene22200:CDS
AATGGCTCACTTTGGAAGAA+GGG 0.522722 3.4:-40589031 MS.gene22200:CDS
CATAAGAGTTACGGTGGCAT+GGG 0.523282 3.4:-40585183 MS.gene22200:CDS
TGTGACAGAGGCGACTAGCT+TGG 0.526204 3.4:-40585103 MS.gene22200:CDS
AATCTTTGGCAACCAGTGAA+AGG 0.527586 3.4:-40588888 MS.gene22200:CDS
GCATAGAGGAGCAACTAACC+GGG 0.528217 3.4:-40585241 MS.gene22200:CDS
GTTACAATTATCATACAGCC+AGG 0.528284 3.4:+40588779 None:intergenic
ACTTAACCATCTGGACATAT+GGG 0.528553 3.4:-40588709 MS.gene22200:CDS
AATAATAAACGCATTCAGGT+GGG 0.529525 3.4:-40585265 MS.gene22200:CDS
TTGTCGGTCCATAAGAGTTA+CGG 0.529678 3.4:-40585192 MS.gene22200:CDS
TATTCTAAGTACGAAGGACT+TGG 0.530634 3.4:-40584992 MS.gene22200:CDS
GATACTGGGGAAGGGAACTT+AGG 0.532496 3.4:-40587856 MS.gene22200:intron
CCATCTGGACATATGGGTGC+AGG 0.534929 3.4:-40588703 MS.gene22200:CDS
ACCTTCCAATCCTGTTTGAG+CGG 0.537667 3.4:+40588537 None:intergenic
TAATAAACGCATTCAGGTGG+GGG 0.540463 3.4:-40585263 MS.gene22200:CDS
ATACTACGCCAGACATAGCT+CGG 0.540733 3.4:+40585012 None:intergenic
TGACAGAATCACTCCTGGTA+TGG 0.542060 3.4:-40588748 MS.gene22200:CDS
GGGACTTCATTGGCTGTCAT+GGG 0.542342 3.4:-40585220 MS.gene22200:CDS
ACGTGATGAAGGATGGGCCC+TGG 0.545386 3.4:-40588797 MS.gene22200:CDS
TGCTGAAGAGGGTGTGCCTG+TGG 0.549326 3.4:-40587890 MS.gene22200:CDS
ACATAATTGTAACAGGTTGA+AGG 0.549812 3.4:-40586863 MS.gene22200:intron
GAGGGCTCGTAATAGTGAAT+GGG 0.550422 3.4:-40588514 MS.gene22200:CDS
GGAGGCTGATCCTGAAGGCT+GGG 0.553743 3.4:-40588133 MS.gene22200:CDS
CTGATGATGGTGTAAGAGGA+TGG 0.556340 3.4:-40588389 MS.gene22200:CDS
ATAATAAACGCATTCAGGTG+GGG 0.556733 3.4:-40585264 MS.gene22200:CDS
CCGCCAACGTGATGAAGGAT+GGG 0.557788 3.4:-40588803 MS.gene22200:CDS
GCTGTCATGGGAAAAGTTGT+CGG 0.557833 3.4:-40585208 MS.gene22200:CDS
AGGATCAGCCTCCATAAGCC+GGG 0.558544 3.4:+40588143 None:intergenic
TGAGGATCCGTTGTTTGCTG+GGG 0.559280 3.4:-40588067 MS.gene22200:CDS
TGAAATTGAAACATGTCGTA+AGG 0.561780 3.4:-40586839 MS.gene22200:CDS
CCGTGTTGCTCAAGCTATTG+GGG 0.562015 3.4:-40588649 MS.gene22200:CDS
TTTGAGAAGGACTCTGATGA+TGG 0.563664 3.4:-40588402 MS.gene22200:CDS
CTATGTTGTTCAGGAATCAC+CGG 0.567921 3.4:+40588285 None:intergenic
GAATAATAAACGCATTCAGG+TGG 0.568501 3.4:-40585266 MS.gene22200:CDS
TGGGCTAATTGGATGCATAA+GGG 0.568817 3.4:-40588114 MS.gene22200:CDS
CCCCAATAGCTTGAGCAACA+CGG 0.569454 3.4:+40588649 None:intergenic
ACTACTGAGATGGTTATCCT+TGG 0.570382 3.4:-40588210 MS.gene22200:CDS
GGTGTTGGGAATGAGTGCGC+AGG 0.574394 3.4:-40588019 MS.gene22200:CDS
GTGGTTGACAGAATCACTCC+TGG 0.576024 3.4:-40588753 MS.gene22200:CDS
GCTTATCTGAGCGAAAGGCT+GGG 0.577274 3.4:-40588912 MS.gene22200:CDS
GAGTGATTCTGTCAACCACC+AGG 0.578421 3.4:+40588757 None:intergenic
ACCGCTCAAACAGGATTGGA+AGG 0.579916 3.4:-40588538 MS.gene22200:CDS
CAGTTGTCTTTAAGTACGAA+AGG 0.581600 3.4:-40588488 MS.gene22200:CDS
CGGGGTCACAAGCTTGACCT+CGG 0.581818 3.4:+40586797 None:intergenic
GTATCCATTAATTCAGCCAC+AGG 0.586540 3.4:+40587874 None:intergenic
AAGCATAGCAGCGTTAAAAG+AGG 0.588689 3.4:+40585146 None:intergenic
ATGGCTCACTTTGGAAGAAG+GGG 0.590141 3.4:-40589030 MS.gene22200:CDS
GAATTAATGGATACTGGGGA+AGG 0.596535 3.4:-40587865 MS.gene22200:CDS
CCTGCACCCATATGTCCAGA+TGG 0.596797 3.4:+40588703 None:intergenic
ACGTCATTAGGGACCATACC+AGG 0.600792 3.4:+40588735 None:intergenic
ATGACAGCCAATGAAGTCCC+CGG 0.606068 3.4:+40585223 None:intergenic
AGATTTGGGATCCGCAGACA+TGG 0.606801 3.4:+40589073 None:intergenic
CTTATGGAGGCTGATCCTGA+AGG 0.607948 3.4:-40588138 MS.gene22200:CDS
TGATCCTGTGAAGAGTGAAC+CGG 0.608582 3.4:-40588304 MS.gene22200:CDS
TCAAACAGGATTGGAAGGTG+AGG 0.610973 3.4:-40588533 MS.gene22200:CDS
TACTACGCCAGACATAGCTC+GGG 0.612723 3.4:+40585013 None:intergenic
GCTTCTCCAATTGCTGAAGA+GGG 0.613116 3.4:-40587901 MS.gene22200:CDS
CAAACAGGATTGGAAGGTGA+GGG 0.616175 3.4:-40588532 MS.gene22200:CDS
TCTTTGGCAACCAGTGAAAG+GGG 0.618630 3.4:-40588886 MS.gene22200:CDS
TCGGGACAGGCAAATACTTG+GGG 0.620098 3.4:-40585491 MS.gene22200:CDS
TCTTAAGACCCGGCTTATGG+AGG 0.620308 3.4:-40588151 MS.gene22200:CDS
AGCTTGGAAATTTGTGACAG+AGG 0.621996 3.4:-40585115 MS.gene22200:CDS
TGGTGAAACGCGGCGCACGA+TGG 0.628285 3.4:-40584972 MS.gene22200:CDS
ATCACCGGTTCACTCTTCAC+AGG 0.629151 3.4:+40588300 None:intergenic
GCCGAGAATTTGTGTAAGCG+TGG 0.634048 3.4:+40585527 None:intergenic
TGGTGGTACTACTACTGAGA+TGG 0.635996 3.4:-40588220 MS.gene22200:CDS
TTCAATCCCTACCATGTCTG+CGG 0.639085 3.4:-40589084 None:intergenic
TTTGTTTCTACCAATCATGG+AGG 0.642101 3.4:+40585464 None:intergenic
TTGTTTCTACCAATCATGGA+GGG 0.642479 3.4:+40585465 None:intergenic
ACGCCAGACATAGCTCGGGT+TGG 0.643957 3.4:+40585017 None:intergenic
GGGCCCATCCTTCATCACGT+TGG 0.645810 3.4:+40588800 None:intergenic
GTGTTGGGAATGAGTGCGCA+GGG 0.646299 3.4:-40588018 MS.gene22200:CDS
AATTAATGGATACTGGGGAA+GGG 0.646578 3.4:-40587864 MS.gene22200:CDS
CCAAGTATTTGCCTGTCCCG+AGG 0.652434 3.4:+40585493 None:intergenic
GCTGTATGATAATTGTAACC+TGG 0.652980 3.4:-40588775 MS.gene22200:CDS
TGATGATGGTGTAAGAGGAT+GGG 0.653821 3.4:-40588388 MS.gene22200:CDS
GTACTGCTGCAACCAATAGG+TGG 0.655972 3.4:-40588332 MS.gene22200:CDS
CGTTGGCGGCATCGAGACGA+TGG 0.656533 3.4:+40588817 None:intergenic
GATTCCGCCCCAGCAAACAA+CGG 0.659452 3.4:+40588060 None:intergenic
AAATCAAGGATCTTAAGACC+CGG 0.661402 3.4:-40588161 MS.gene22200:CDS
TGGACGGGTTCTCACTGACA+AGG 0.671477 3.4:-40588946 MS.gene22200:CDS
CATAGAGGAGCAACTAACCG+GGG 0.675514 3.4:-40585240 MS.gene22200:CDS
TGGCTCACTTTGGAAGAAGG+GGG 0.679500 3.4:-40589029 MS.gene22200:CDS
TGGACAGGCTACACAGAGTG+AGG 0.680613 3.4:-40588085 MS.gene22200:CDS
ACGAAGGACTTGGTGAAACG+CGG 0.681012 3.4:-40584982 MS.gene22200:CDS
GCGTAGTATTCTAAGTACGA+AGG 0.686692 3.4:-40584998 MS.gene22200:CDS
TTACAATTATCATACAGCCA+GGG 0.692222 3.4:+40588780 None:intergenic
TCGGTCCATAAGAGTTACGG+TGG 0.693371 3.4:-40585189 MS.gene22200:CDS
GGCTGAATTAATGGATACTG+GGG 0.699613 3.4:-40587869 MS.gene22200:CDS
CCAATAGCTTGAGCAACACG+GGG 0.702702 3.4:+40588651 None:intergenic
GTATGATAATTGTAACCTGG+TGG 0.702924 3.4:-40588772 MS.gene22200:CDS
TTGACTGAATGTCGTAACCG+AGG 0.705962 3.4:-40586814 MS.gene22200:CDS
AATCCAAATGCAATGTCTGG+TGG 0.708256 3.4:-40588237 MS.gene22200:CDS
CTGCACTGATACGTCCACCA+AGG 0.711267 3.4:+40588193 None:intergenic
GTAACGACGCTAGCTGTTCG+GGG 0.714917 3.4:+40586779 None:intergenic
ACGGGTTCTCACTGACAAGG+AGG 0.715808 3.4:-40588943 MS.gene22200:CDS
CTAGTGCCGAAAGTTATACG+TGG 0.728686 3.4:-40587033 MS.gene22200:CDS
GAACCCGTCCAATCAGACAG+TGG 0.751320 3.4:+40588958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTCATCTATTTGAAA+AGG + chr3.4:40587479-40587498 None:intergenic 15.0%
!! TTCATTATATGAAAACAAAT+AGG - chr3.4:40587867-40587886 MS.gene22200:CDS 15.0%
!!! ATGATTGTTTTCTATTTTTT+AGG - chr3.4:40588245-40588264 MS.gene22200:CDS 15.0%
!!! TGATTGTTTTCTATTTTTTA+GGG - chr3.4:40588246-40588265 MS.gene22200:CDS 15.0%
!! AATGTAATATACTTCAGATT+TGG + chr3.4:40588350-40588369 None:intergenic 20.0%
!! AATTATAGTACAATTGAAAG+AGG + chr3.4:40586420-40586439 None:intergenic 20.0%
!! ATGTAATATACTTCAGATTT+GGG + chr3.4:40588349-40588368 None:intergenic 20.0%
!! ATTATATGAAAACAAATAGG+AGG - chr3.4:40587870-40587889 MS.gene22200:CDS 20.0%
!! TAATACAGGATGATAATTAT+TGG - chr3.4:40587187-40587206 MS.gene22200:intron 20.0%
!!! GTTGTATAAATTAGTTTCTA+AGG - chr3.4:40587733-40587752 MS.gene22200:intron 20.0%
! AAAAGCTTCACTATTATTAG+AGG + chr3.4:40586318-40586337 None:intergenic 25.0%
! AAAGAATAATAAACGCATTC+AGG - chr3.4:40588653-40588672 MS.gene22200:CDS 25.0%
! ATGTGAAAAATTGTTTGAGA+AGG - chr3.4:40585507-40585526 MS.gene22200:CDS 25.0%
! ATTCACATGGTTTAAAAGTA+TGG - chr3.4:40586735-40586754 MS.gene22200:intron 25.0%
! ATTTGAAAGAAGTAATGTTG+AGG - chr3.4:40587960-40587979 MS.gene22200:CDS 25.0%
! CACCATTAAACATATTCTAT+CGG - chr3.4:40588288-40588307 MS.gene22200:CDS 25.0%
! GATGAATCAATTGTTAATAC+AGG - chr3.4:40587173-40587192 MS.gene22200:intron 25.0%
! TGAAATATTAGTGGAGTTTA+AGG + chr3.4:40587648-40587667 None:intergenic 25.0%
! TGAAGTATATTACATTAGTC+CGG - chr3.4:40588354-40588373 MS.gene22200:CDS 25.0%
! TGACAACAAAGTTTAAGAAA+AGG - chr3.4:40585980-40585999 MS.gene22200:intron 25.0%
! TGTAATATACTTCAGATTTG+GGG + chr3.4:40588348-40588367 None:intergenic 25.0%
! TTGGTTAATAATAACTTGGT+CGG - chr3.4:40588049-40588068 MS.gene22200:CDS 25.0%
!! ATACTTTTAAACCATGTGAA+TGG + chr3.4:40586736-40586755 None:intergenic 25.0%
!! ATTTGCTGAAAATGATGTAA+CGG - chr3.4:40586143-40586162 MS.gene22200:intron 25.0%
!! CAAACAATTTTTCACATGTA+CGG + chr3.4:40585504-40585523 None:intergenic 25.0%
!! GTATTAACAATTGATTCATC+TGG + chr3.4:40587173-40587192 None:intergenic 25.0%
!! TACTTTTAAACCATGTGAAT+GGG + chr3.4:40586735-40586754 None:intergenic 25.0%
!! TGGATGTAAAGCATTAATTA+GGG + chr3.4:40587420-40587439 None:intergenic 25.0%
!! TTCACATGGTTTAAAAGTAT+GGG - chr3.4:40586736-40586755 MS.gene22200:intron 25.0%
!!! AGTGTTGGTTAATAATAACT+TGG - chr3.4:40588045-40588064 MS.gene22200:CDS 25.0%
AAAATGCTCATCACATATGT+CGG + chr3.4:40588601-40588620 None:intergenic 30.0%
AAAGTTCATTGGTATTAGGA+TGG - chr3.4:40587221-40587240 MS.gene22200:intron 30.0%
AATAATAAACGCATTCAGGT+GGG - chr3.4:40588657-40588676 MS.gene22200:CDS 30.0%
AATATTTCACTCATTCCGAA+GGG - chr3.4:40587659-40587678 MS.gene22200:intron 30.0%
AATCATTAGCGAACAAAAGA+TGG + chr3.4:40588231-40588250 None:intergenic 30.0%
ATACAGGTAACACACAATTT+CGG - chr3.4:40589049-40589068 MS.gene22200:CDS 30.0%
ATATGAAAACAAATAGGAGG+CGG - chr3.4:40587873-40587892 MS.gene22200:CDS 30.0%
ATATTAGTGGAGTTTAAGGA+TGG + chr3.4:40587644-40587663 None:intergenic 30.0%
ATCATTAGCGAACAAAAGAT+GGG + chr3.4:40588230-40588249 None:intergenic 30.0%
ATTGTGTGTTACCTGTATTA+TGG + chr3.4:40589047-40589066 None:intergenic 30.0%
CAATGAATCTCAACATTGAA+TGG - chr3.4:40584873-40584892 MS.gene22200:intron 30.0%
CACCGATAGAATATGTTTAA+TGG + chr3.4:40588293-40588312 None:intergenic 30.0%
CATTCAATGTTGAGATTCAT+TGG + chr3.4:40584875-40584894 None:intergenic 30.0%
GATATATTAAGGATCGAATC+TGG - chr3.4:40588494-40588513 MS.gene22200:CDS 30.0%
TAATATTTCACTCATTCCGA+AGG - chr3.4:40587658-40587677 MS.gene22200:intron 30.0%
TATTAGTGGAGTTTAAGGAT+GGG + chr3.4:40587643-40587662 None:intergenic 30.0%
TCGGAAAGAAATAAAACATC+TGG + chr3.4:40586284-40586303 None:intergenic 30.0%
TGAAATTGAAACATGTCGTA+AGG - chr3.4:40587083-40587102 MS.gene22200:CDS 30.0%
TGCAAAAGTTCATTGGTATT+AGG - chr3.4:40587217-40587236 MS.gene22200:intron 30.0%
TGGTTAATAATAACTTGGTC+GGG - chr3.4:40588050-40588069 MS.gene22200:CDS 30.0%
TGTATATCAGTCCATAATAC+AGG - chr3.4:40589033-40589052 MS.gene22200:CDS 30.0%
TTACAATTATCATACAGCCA+GGG + chr3.4:40585145-40585164 None:intergenic 30.0%
TTGAGATTCATTGGAGATTT+GGG + chr3.4:40584866-40584885 None:intergenic 30.0%
! AAATTTGGTTTCTCATTCGT+CGG - chr3.4:40586843-40586862 MS.gene22200:CDS 30.0%
! ACAGAGAATAAAAAGGTATG+GGG + chr3.4:40588119-40588138 None:intergenic 30.0%
! ACATAATTGTAACAGGTTGA+AGG - chr3.4:40587059-40587078 MS.gene22200:CDS 30.0%
! AGAGCATACTGGTTAATTAA+TGG - chr3.4:40586653-40586672 MS.gene22200:intron 30.0%
! ATAAAAAGGTATGGGGATAA+CGG + chr3.4:40588112-40588131 None:intergenic 30.0%
! CACAGAGAATAAAAAGGTAT+GGG + chr3.4:40588120-40588139 None:intergenic 30.0%
! CTGGATGTAAAGCATTAATT+AGG + chr3.4:40587421-40587440 None:intergenic 30.0%
! GAGCATACTGGTTAATTAAT+GGG - chr3.4:40586654-40586673 MS.gene22200:intron 30.0%
! GGATGTAAAGCATTAATTAG+GGG + chr3.4:40587419-40587438 None:intergenic 30.0%
! GGCAACTTTTGGATATATTA+AGG - chr3.4:40588483-40588502 MS.gene22200:CDS 30.0%
!!! GACTTTTTTGACGCAAATAT+TGG - chr3.4:40588880-40588899 MS.gene22200:CDS 30.0%
AAAGAAGTAATGTTGAGGCT+TGG - chr3.4:40587965-40587984 MS.gene22200:CDS 35.0%
AAATCAAGGATCTTAAGACC+CGG - chr3.4:40585761-40585780 MS.gene22200:intron 35.0%
AAGGATTGATTGCGCTTATT+AGG - chr3.4:40588143-40588162 MS.gene22200:CDS 35.0%
AATGCATGGGATTATTTGCA+TGG - chr3.4:40586542-40586561 MS.gene22200:intron 35.0%
ACAACTCCTCAAAATATTCC+CGG + chr3.4:40587370-40587389 None:intergenic 35.0%
ACTTAACCATCTGGACATAT+GGG - chr3.4:40585213-40585232 MS.gene22200:CDS 35.0%
AGAAATGATTGTAGAACTCG+GGG + chr3.4:40587556-40587575 None:intergenic 35.0%
AGAACCTAGATTTAGAGATG+TGG - chr3.4:40586951-40586970 MS.gene22200:intron 35.0%
AGGTTCACAATCTTCCATTT+GGG - chr3.4:40585239-40585258 MS.gene22200:CDS 35.0%
ATAATAAACGCATTCAGGTG+GGG - chr3.4:40588658-40588677 MS.gene22200:CDS 35.0%
ATCAATTCTGGATAATGCGA+TGG - chr3.4:40587829-40587848 MS.gene22200:intron 35.0%
ATGCATGGGATTATTTGCAT+GGG - chr3.4:40586543-40586562 MS.gene22200:intron 35.0%
ATTAGTGGAGTTTAAGGATG+GGG + chr3.4:40587642-40587661 None:intergenic 35.0%
CAGAAATGATTGTAGAACTC+GGG + chr3.4:40587557-40587576 None:intergenic 35.0%
CAGTTGTCTTTAAGTACGAA+AGG - chr3.4:40585434-40585453 MS.gene22200:CDS 35.0%
CATGATTGGTAGAAACAAAC+AGG - chr3.4:40588462-40588481 MS.gene22200:CDS 35.0%
CCAGAAATGATTGTAGAACT+CGG + chr3.4:40587558-40587577 None:intergenic 35.0%
CGGAATGAGTGAAATATTAG+TGG + chr3.4:40587657-40587676 None:intergenic 35.0%
CTTCTGCACAGAGAATAAAA+AGG + chr3.4:40588126-40588145 None:intergenic 35.0%
GAATAATAAACGCATTCAGG+TGG - chr3.4:40588656-40588675 MS.gene22200:CDS 35.0%
GCACAGAGAATAAAAAGGTA+TGG + chr3.4:40588121-40588140 None:intergenic 35.0%
GCGTGAGGTAATGATTAAAT+CGG - chr3.4:40588561-40588580 MS.gene22200:CDS 35.0%
GCTGTATGATAATTGTAACC+TGG - chr3.4:40585147-40585166 MS.gene22200:CDS 35.0%
GTATGATAATTGTAACCTGG+TGG - chr3.4:40585150-40585169 MS.gene22200:CDS 35.0%
GTGAACTTTCAGCATCATAA+AGG + chr3.4:40585350-40585369 None:intergenic 35.0%
GTTACAATTATCATACAGCC+AGG + chr3.4:40585146-40585165 None:intergenic 35.0%
GTTGAGATTCATTGGAGATT+TGG + chr3.4:40584867-40584886 None:intergenic 35.0%
TATTCTAAGTACGAAGGACT+TGG - chr3.4:40588930-40588949 MS.gene22200:CDS 35.0%
TCAACCACATCTCTAAATCT+AGG + chr3.4:40586958-40586977 None:intergenic 35.0%
TGTCGTGAGTTCCAAATTAT+CGG + chr3.4:40587456-40587475 None:intergenic 35.0%
TGTTACTGACACCGATAATT+TGG - chr3.4:40587442-40587461 MS.gene22200:intron 35.0%
TTGTTTGAGCATGAGAAATC+TGG - chr3.4:40586620-40586639 MS.gene22200:intron 35.0%
TTTATACAACACGTTGCACA+AGG + chr3.4:40587723-40587742 None:intergenic 35.0%
! AATTAATGGATACTGGGGAA+GGG - chr3.4:40586058-40586077 MS.gene22200:intron 35.0%
! AGAAACAAACAGGCAACTTT+TGG - chr3.4:40588472-40588491 MS.gene22200:CDS 35.0%
! ATTTTGCTTATCTGAGCGAA+AGG - chr3.4:40585005-40585024 MS.gene22200:CDS 35.0%
! CAAAATTGAAGTACCTAGTG+CGG - chr3.4:40586249-40586268 MS.gene22200:intron 35.0%
! CAATTTTTCACATGTACGGT+CGG + chr3.4:40585500-40585519 None:intergenic 35.0%
! CGTATTGATGATCATGCTAA+GGG - chr3.4:40586467-40586486 MS.gene22200:intron 35.0%
! CTTTTTATTCTCTGTGCAGA+AGG - chr3.4:40588124-40588143 MS.gene22200:CDS 35.0%
! GAAGCTTTTCGTTATATGCT+TGG - chr3.4:40586329-40586348 MS.gene22200:intron 35.0%
! TCGTATTGATGATCATGCTA+AGG - chr3.4:40586466-40586485 MS.gene22200:intron 35.0%
! TCTGAAGCTTGATATAAGCA+AGG - chr3.4:40587913-40587932 MS.gene22200:CDS 35.0%
! TGGCTGAATTAATGGATACT+GGG - chr3.4:40586052-40586071 MS.gene22200:intron 35.0%
!! ACAATTATGTCGACTCCAAT+TGG + chr3.4:40587049-40587068 None:intergenic 35.0%
!! ATGTCAACTGTGAAAGTGTT+TGG + chr3.4:40588631-40588650 None:intergenic 35.0%
!! CTGTTTGTTTCTACCAATCA+TGG + chr3.4:40588464-40588483 None:intergenic 35.0%
!! TATTTTGAGGAGTTGTTCCA+AGG - chr3.4:40587374-40587393 MS.gene22200:intron 35.0%
!! TGCAGTTCATTCTGAAATCA+AGG - chr3.4:40585747-40585766 MS.gene22200:intron 35.0%
!! TGTCTTGCTGTTAATAGTAC+TGG - chr3.4:40586362-40586381 MS.gene22200:intron 35.0%
!! TTGCTGTTAATAGTACTGGT+CGG - chr3.4:40586366-40586385 MS.gene22200:intron 35.0%
!! TTGTTTCTACCAATCATGGA+GGG + chr3.4:40588460-40588479 None:intergenic 35.0%
!! TTTGTTTCTACCAATCATGG+AGG + chr3.4:40588461-40588480 None:intergenic 35.0%
!!! AAGAACCTTTTTCAACCTGT+TGG + chr3.4:40587765-40587784 None:intergenic 35.0%
!!! TGGACTTTTTGTTTTGCTTG+TGG - chr3.4:40585460-40585479 MS.gene22200:CDS 35.0%
AAACCATCTTCTCGGAAACT+AGG - chr3.4:40585568-40585587 MS.gene22200:intron 40.0%
AACAAAAGATGGGATACCAC+TGG + chr3.4:40588220-40588239 None:intergenic 40.0%
AAGCATAGCAGCGTTAAAAG+AGG + chr3.4:40588779-40588798 None:intergenic 40.0%
AATATATGCTCAGCTGTCCT+TGG + chr3.4:40587394-40587413 None:intergenic 40.0%
AATCCAAATGCAATGTCTGG+TGG - chr3.4:40585685-40585704 MS.gene22200:intron 40.0%
AATCTCTCCTCTATAGCTCT+CGG + chr3.4:40586766-40586785 None:intergenic 40.0%
AATCTTTGGCAACCAGTGAA+AGG - chr3.4:40585034-40585053 MS.gene22200:CDS 40.0%
AATTGATCTGCCAGGTACAA+AGG + chr3.4:40587816-40587835 None:intergenic 40.0%
ACATATTCTATCGGTGTACG+AGG - chr3.4:40588297-40588316 MS.gene22200:CDS 40.0%
ACCACGCTTACACAAATTCT+CGG - chr3.4:40588394-40588413 MS.gene22200:CDS 40.0%
ACTACTGAGATGGTTATCCT+TGG - chr3.4:40585712-40585731 MS.gene22200:intron 40.0%
AGAATTGTAACCCCTTTCAC+TGG + chr3.4:40585049-40585068 None:intergenic 40.0%
AGCAACGTGCAAAAGTTCAT+TGG - chr3.4:40587210-40587229 MS.gene22200:intron 40.0%
AGCTTGGAAATTTGTGACAG+AGG - chr3.4:40588807-40588826 MS.gene22200:CDS 40.0%
AGTAAGTGTCTATTGAAGGC+GGG - chr3.4:40588538-40588557 MS.gene22200:CDS 40.0%
ATCATCTGCTGGAAAACATC+TGG - chr3.4:40585882-40585901 MS.gene22200:intron 40.0%
ATCCGAATGCATAGCAAACA+TGG + chr3.4:40587507-40587526 None:intergenic 40.0%
ATCTTTGGCAACCAGTGAAA+GGG - chr3.4:40585035-40585054 MS.gene22200:CDS 40.0%
ATGGGATTATTTGCATGGGT+TGG - chr3.4:40586547-40586566 MS.gene22200:intron 40.0%
CAACATTGAATGGCTCACTT+TGG - chr3.4:40584883-40584902 MS.gene22200:intron 40.0%
CAACTCCTCAAAATATTCCC+GGG + chr3.4:40587369-40587388 None:intergenic 40.0%
CACTTAACCATCTGGACATA+TGG - chr3.4:40585212-40585231 MS.gene22200:CDS 40.0%
CAGGTTCACAATCTTCCATT+TGG - chr3.4:40585238-40585257 MS.gene22200:CDS 40.0%
CAGTAAGTGTCTATTGAAGG+CGG - chr3.4:40588537-40588556 MS.gene22200:CDS 40.0%
CATCGAGACGATGGTTAAAT+TGG + chr3.4:40585099-40585118 None:intergenic 40.0%
CCGAGTTCTACAATCATTTC+TGG - chr3.4:40587555-40587574 MS.gene22200:intron 40.0%
CGTACACCACGTATAACTTT+CGG + chr3.4:40586898-40586917 None:intergenic 40.0%
CTATGCTTGGTAAACAAGCT+TGG - chr3.4:40588791-40588810 MS.gene22200:CDS 40.0%
CTATGTTGTTCAGGAATCAC+CGG + chr3.4:40585640-40585659 None:intergenic 40.0%
GAGCAGTAAGTGTCTATTGA+AGG - chr3.4:40588534-40588553 MS.gene22200:CDS 40.0%
GATATGTACTAATGCTCCAG+TGG - chr3.4:40588201-40588220 MS.gene22200:CDS 40.0%
GCGCTTCAAAGGCTATAATA+CGG + chr3.4:40587301-40587320 None:intergenic 40.0%
GCGTAGTATTCTAAGTACGA+AGG - chr3.4:40588924-40588943 MS.gene22200:CDS 40.0%
GGAGTCGACATAATTGTAAC+AGG - chr3.4:40587052-40587071 MS.gene22200:CDS 40.0%
GGTATTATGGATTCCCAGAA+GGG - chr3.4:40586507-40586526 MS.gene22200:intron 40.0%
GGTTAAGTGCTACGTCATTA+GGG + chr3.4:40585201-40585220 None:intergenic 40.0%
GTATCCATTAATTCAGCCAC+AGG + chr3.4:40586051-40586070 None:intergenic 40.0%
GTATTATGGATTCCCAGAAG+GGG - chr3.4:40586508-40586527 MS.gene22200:intron 40.0%
GTCAATCCAAATGCAATGTC+TGG - chr3.4:40585682-40585701 MS.gene22200:intron 40.0%
GTGCAGGTGATTTAACCAAT+TGG - chr3.4:40587031-40587050 MS.gene22200:CDS 40.0%
TAATAAACGCATTCAGGTGG+GGG - chr3.4:40588659-40588678 MS.gene22200:CDS 40.0%
TAATACCCGGTAAATTGCCA+AGG + chr3.4:40586494-40586513 None:intergenic 40.0%
TACGACAGAGCTGGAAAATT+TGG - chr3.4:40586828-40586847 MS.gene22200:CDS 40.0%
TATGCATTCGGATAAGTGTC+CGG - chr3.4:40587514-40587533 MS.gene22200:intron 40.0%
TATTATGGATTCCCAGAAGG+GGG - chr3.4:40586509-40586528 MS.gene22200:intron 40.0%
TCTTTAAGTACGAAAGGCTC+TGG - chr3.4:40585440-40585459 MS.gene22200:CDS 40.0%
TGATGTCATACCTAGACTAG+AGG - chr3.4:40587005-40587024 MS.gene22200:intron 40.0%
TGGCAATTTACCGGGTATTA+TGG - chr3.4:40586494-40586513 MS.gene22200:intron 40.0%
TGGGCTAATTGGATGCATAA+GGG - chr3.4:40585808-40585827 MS.gene22200:intron 40.0%
TGGTTAAGTGCTACGTCATT+AGG + chr3.4:40585202-40585221 None:intergenic 40.0%
TTAGTGGAGTTTAAGGATGG+GGG + chr3.4:40587641-40587660 None:intergenic 40.0%
TTATCCAGAATTGATCTGCC+AGG + chr3.4:40587824-40587843 None:intergenic 40.0%
TTCCTCTCATGAATCAACCT+TGG - chr3.4:40588995-40589014 MS.gene22200:CDS 40.0%
TTGTCGGTCCATAAGAGTTA+CGG - chr3.4:40588730-40588749 MS.gene22200:CDS 40.0%
TTTGAGAAGGACTCTGATGA+TGG - chr3.4:40585520-40585539 MS.gene22200:CDS 40.0%
! AAATTTTCCAGCTCTGTCGT+AGG + chr3.4:40586829-40586848 None:intergenic 40.0%
! AATGGCTCACTTTGGAAGAA+GGG - chr3.4:40584891-40584910 MS.gene22200:intron 40.0%
! AATTTTCCAGCTCTGTCGTA+GGG + chr3.4:40586828-40586847 None:intergenic 40.0%
! AGTACCTAGTGCGGTATTTT+AGG - chr3.4:40586258-40586277 MS.gene22200:intron 40.0%
! CGCACTAGGTACTTCAATTT+TGG + chr3.4:40586251-40586270 None:intergenic 40.0%
! GAATTAATGGATACTGGGGA+AGG - chr3.4:40586057-40586076 MS.gene22200:intron 40.0%
! GATTGTGGATTACTCAGTGT+TGG - chr3.4:40588030-40588049 MS.gene22200:CDS 40.0%
! GGCTGAATTAATGGATACTG+GGG - chr3.4:40586053-40586072 MS.gene22200:intron 40.0%
! GTGGCTGAATTAATGGATAC+TGG - chr3.4:40586051-40586070 MS.gene22200:intron 40.0%
! TAGGTACTGCTGATGTTAGT+GGG - chr3.4:40586085-40586104 MS.gene22200:intron 40.0%
! TCTTGCCAACAGGTTGAAAA+AGG - chr3.4:40587757-40587776 MS.gene22200:intron 40.0%
! TCTTTTAACGCTGCTATGCT+TGG - chr3.4:40588778-40588797 MS.gene22200:CDS 40.0%
! TTAGGTACTGCTGATGTTAG+TGG - chr3.4:40586084-40586103 MS.gene22200:intron 40.0%
! TTCTGGGAATCCATAATACC+CGG + chr3.4:40586507-40586526 None:intergenic 40.0%
!! AATTAATGGGTTCCGACAAG+CGG - chr3.4:40586667-40586686 MS.gene22200:intron 40.0%
!! AGCCATGTTTGCTATGCATT+CGG - chr3.4:40587502-40587521 MS.gene22200:intron 40.0%
!! GAAAGAGGTATTCCAGTAGA+GGG + chr3.4:40586405-40586424 None:intergenic 40.0%
!! TGAAAGAGGTATTCCAGTAG+AGG + chr3.4:40586406-40586425 None:intergenic 40.0%
!! TGATGATGGTGTAAGAGGAT+GGG - chr3.4:40585534-40585553 MS.gene22200:CDS 40.0%
!! TTATCGGTGTCAGTAACAAC+TGG + chr3.4:40587440-40587459 None:intergenic 40.0%
!! TTTCTAAGGTTCTTGCCAAC+AGG - chr3.4:40587747-40587766 MS.gene22200:intron 40.0%
!!! TCAATTTTGGAACTACACGC+AGG + chr3.4:40586238-40586257 None:intergenic 40.0%
AAATCCCCACCAATACACCA+CGG + chr3.4:40586590-40586609 None:intergenic 45.0%
AACACGTTGCACAAGGCAAT+TGG + chr3.4:40587716-40587735 None:intergenic 45.0%
AACGGACAATGAAGGATTGG+AGG - chr3.4:40587690-40587709 MS.gene22200:intron 45.0%
AAGGGTCCTTGGCAATTTAC+CGG - chr3.4:40586485-40586504 MS.gene22200:intron 45.0%
ACATCAGCAACGGACAATGA+AGG - chr3.4:40587682-40587701 MS.gene22200:intron 45.0%
ACCTTCCAATCCTGTTTGAG+CGG + chr3.4:40585388-40585407 None:intergenic 45.0%
ACTGAGATGGTTATCCTTGG+TGG - chr3.4:40585715-40585734 MS.gene22200:intron 45.0%
AGCAACGGACAATGAAGGAT+TGG - chr3.4:40587687-40587706 MS.gene22200:intron 45.0%
AGGTGTGCGATCGAATTGAT+TGG - chr3.4:40587933-40587952 MS.gene22200:CDS 45.0%
AGTAACATCTGGCGCTTCAA+AGG + chr3.4:40587312-40587331 None:intergenic 45.0%
AGTCAATCTGCCTTTGTACC+TGG - chr3.4:40587803-40587822 MS.gene22200:intron 45.0%
AGTTTACCGTGGTGTATTGG+TGG - chr3.4:40586581-40586600 MS.gene22200:intron 45.0%
ATACTACGCCAGACATAGCT+CGG + chr3.4:40588913-40588932 None:intergenic 45.0%
ATGATCATGCTAAGGGTCCT+TGG - chr3.4:40586474-40586493 MS.gene22200:intron 45.0%
ATGCATTCGGATAAGTGTCC+GGG - chr3.4:40587515-40587534 MS.gene22200:intron 45.0%
ATTAGAGGAGACGAGAGTCT+CGG + chr3.4:40586303-40586322 None:intergenic 45.0%
ATTCTCGACCACTGTCTGAT+TGG - chr3.4:40584956-40584975 MS.gene22200:intron 45.0%
CAAACAGGATTGGAAGGTGA+GGG - chr3.4:40585390-40585409 MS.gene22200:intron 45.0%
CAAGAGATGTGAGTTTACCG+TGG - chr3.4:40586570-40586589 MS.gene22200:intron 45.0%
CAAGCTATTGGGGCATATCT+TGG - chr3.4:40585283-40585302 MS.gene22200:intron 45.0%
CAATTCTGCCTGCTGCTAAA+AGG - chr3.4:40585062-40585081 MS.gene22200:CDS 45.0%
CATAAGAGTTACGGTGGCAT+GGG - chr3.4:40588739-40588758 MS.gene22200:CDS 45.0%
CCACAATCTCGACACACATA+AGG + chr3.4:40588018-40588037 None:intergenic 45.0%
CCTTATGTGTGTCGAGATTG+TGG - chr3.4:40588015-40588034 MS.gene22200:CDS 45.0%
CTGGGCTAATTGGATGCATA+AGG - chr3.4:40585807-40585826 MS.gene22200:intron 45.0%
GAGATGTGGTTGAAACTAGC+TGG - chr3.4:40586965-40586984 MS.gene22200:intron 45.0%
GAGGGCTCGTAATAGTGAAT+GGG - chr3.4:40585408-40585427 MS.gene22200:CDS 45.0%
GCATGACAGATAGAGCATAC+TGG - chr3.4:40586642-40586661 MS.gene22200:intron 45.0%
GCCAGATGTTACTCGAGTTA+CGG - chr3.4:40587319-40587338 MS.gene22200:intron 45.0%
GCTGAAAATGATGTAACGGC+AGG - chr3.4:40586147-40586166 MS.gene22200:intron 45.0%
GCTGGAAAACATCTGGTGTT+GGG - chr3.4:40585889-40585908 MS.gene22200:intron 45.0%
GCTGTCATGGGAAAAGTTGT+CGG - chr3.4:40588714-40588733 MS.gene22200:CDS 45.0%
GCTTCTCCAATTGCTGAAGA+GGG - chr3.4:40586021-40586040 MS.gene22200:intron 45.0%
GGGTATTATGGATTCCCAGA+AGG - chr3.4:40586506-40586525 MS.gene22200:intron 45.0%
GGTGTGCGATCGAATTGATT+GGG - chr3.4:40587934-40587953 MS.gene22200:CDS 45.0%
GTAAGTGTCTATTGAAGGCG+GGG - chr3.4:40588539-40588558 MS.gene22200:CDS 45.0%
GTACCACCAGACATTGCATT+TGG + chr3.4:40585691-40585710 None:intergenic 45.0%
GTACCTAGTTTCCGAGAAGA+TGG + chr3.4:40585574-40585593 None:intergenic 45.0%
GTGAGTTTACCGTGGTGTAT+TGG - chr3.4:40586578-40586597 MS.gene22200:intron 45.0%
TCAAACAGGATTGGAAGGTG+AGG - chr3.4:40585389-40585408 MS.gene22200:intron 45.0%
TCCGTAACTCGAGTAACATC+TGG + chr3.4:40587323-40587342 None:intergenic 45.0%
TCTTTGGCAACCAGTGAAAG+GGG - chr3.4:40585036-40585055 MS.gene22200:CDS 45.0%
TGACAGAATCACTCCTGGTA+TGG - chr3.4:40585174-40585193 MS.gene22200:CDS 45.0%
TGACGTAGCACTTAACCATC+TGG - chr3.4:40585204-40585223 MS.gene22200:CDS 45.0%
TGAGGGCTCGTAATAGTGAA+TGG - chr3.4:40585407-40585426 MS.gene22200:CDS 45.0%
TGATCCTGTGAAGAGTGAAC+CGG - chr3.4:40585618-40585637 MS.gene22200:intron 45.0%
TGCTGGAAAACATCTGGTGT+TGG - chr3.4:40585888-40585907 MS.gene22200:intron 45.0%
TGGTGGTACTACTACTGAGA+TGG - chr3.4:40585702-40585721 MS.gene22200:intron 45.0%
TGTACCTGGCAGATCAATTC+TGG - chr3.4:40587817-40587836 MS.gene22200:intron 45.0%
TGTGCCTGTGGCTGAATTAA+TGG - chr3.4:40586044-40586063 MS.gene22200:intron 45.0%
TTCAGATTTGGGGAGACTGA+TGG + chr3.4:40588338-40588357 None:intergenic 45.0%
TTGACAGCAGCTCGTGTAAA+CGG + chr3.4:40585667-40585686 None:intergenic 45.0%
TTGACTGAATGTCGTAACCG+AGG - chr3.4:40587108-40587127 MS.gene22200:intron 45.0%
! AACGGAGCACTATGTTGTTC+AGG + chr3.4:40585649-40585668 None:intergenic 45.0%
! AGCCAAGGTTGATTCATGAG+AGG + chr3.4:40589000-40589019 None:intergenic 45.0%
! AGGTACTGCTGATGTTAGTG+GGG - chr3.4:40586086-40586105 MS.gene22200:intron 45.0%
! ATGGCTCACTTTGGAAGAAG+GGG - chr3.4:40584892-40584911 MS.gene22200:intron 45.0%
! CGAGTCTGAAACCATCTTCT+CGG - chr3.4:40585560-40585579 MS.gene22200:intron 45.0%
! CTAGTGCCGAAAGTTATACG+TGG - chr3.4:40586889-40586908 MS.gene22200:intron 45.0%
! GAATGGCTCACTTTGGAAGA+AGG - chr3.4:40584890-40584909 MS.gene22200:intron 45.0%
! GCACTAGTCTGAGCAGAATA+GGG + chr3.4:40586876-40586895 None:intergenic 45.0%
! GTTTACCGTGGTGTATTGGT+GGG - chr3.4:40586582-40586601 MS.gene22200:intron 45.0%
! TAGGTACTGCTGCAACCAAT+AGG - chr3.4:40585587-40585606 MS.gene22200:intron 45.0%
! TGTTTTGCTTGTGGTGTGCT+GGG - chr3.4:40585469-40585488 MS.gene22200:CDS 45.0%
! TTTACCGTGGTGTATTGGTG+GGG - chr3.4:40586583-40586602 MS.gene22200:intron 45.0%
!! AATCAACCTTGGCTTGCTTC+TGG - chr3.4:40589006-40589025 MS.gene22200:CDS 45.0%
!! ATATCTTCCAGGAGTGTTGC+AGG - chr3.4:40587594-40587613 MS.gene22200:intron 45.0%
!! CTGATGATGGTGTAAGAGGA+TGG - chr3.4:40585533-40585552 MS.gene22200:CDS 45.0%
!! GACTCTGATGATGGTGTAAG+AGG - chr3.4:40585529-40585548 MS.gene22200:CDS 45.0%
!! GTGTAGCACTGATATCTTCC+AGG - chr3.4:40587583-40587602 MS.gene22200:intron 45.0%
!! GTTAATAGTACTGGTCGGAG+TGG - chr3.4:40586371-40586390 MS.gene22200:intron 45.0%
!! TGGATGCATAAGGGTATTGC+TGG - chr3.4:40585817-40585836 MS.gene22200:intron 45.0%
!! TTGTTTTGCTTGTGGTGTGC+TGG - chr3.4:40585468-40585487 MS.gene22200:CDS 45.0%
!!! CACTTTTTTACGCGCCTTTG+CGG + chr3.4:40587276-40587295 None:intergenic 45.0%
!!! GCTTGGTTTTGCAACCGAAT+GGG - chr3.4:40587982-40588001 MS.gene22200:CDS 45.0%
!!! GTTTTTTCATGCCTCCGCAA+AGG - chr3.4:40587259-40587278 MS.gene22200:intron 45.0%
ACCGCTCAAACAGGATTGGA+AGG - chr3.4:40585384-40585403 MS.gene22200:intron 50.0%
ACGTAACGACGCTAGCTGTT+CGG + chr3.4:40587148-40587167 None:intergenic 50.0%
ACGTCATTAGGGACCATACC+AGG + chr3.4:40585190-40585209 None:intergenic 50.0%
ACTCGAGTTACGGATGAGAC+AGG - chr3.4:40587329-40587348 MS.gene22200:intron 50.0%
AGGGTCCTTGGCAATTTACC+GGG - chr3.4:40586486-40586505 MS.gene22200:intron 50.0%
AGTGAGGATCCGTTGTTTGC+TGG - chr3.4:40585853-40585872 MS.gene22200:intron 50.0%
ATCCAATTAGCCCAGCCTTC+AGG + chr3.4:40585802-40585821 None:intergenic 50.0%
ATCCTGAAGGCTGGGCTAAT+TGG - chr3.4:40585797-40585816 MS.gene22200:intron 50.0%
ATCGTGCCTTGGCAACTGAT+GGG - chr3.4:40586788-40586807 MS.gene22200:CDS 50.0%
ATGACAGCCAATGAAGTCCC+CGG + chr3.4:40588702-40588721 None:intergenic 50.0%
ATTAGGCAAGCAGAGAGGAG+TGG - chr3.4:40588160-40588179 MS.gene22200:CDS 50.0%
CAAAATATTCCCGGGCCAAG+TGG + chr3.4:40587361-40587380 None:intergenic 50.0%
CAACTAACCGGGGACTTCAT+TGG - chr3.4:40588692-40588711 MS.gene22200:CDS 50.0%
CACAACCGCTCAAACAGGAT+TGG - chr3.4:40585380-40585399 MS.gene22200:intron 50.0%
CATAGAGGAGCAACTAACCG+GGG - chr3.4:40588682-40588701 MS.gene22200:CDS 50.0%
CCAATAGCTTGAGCAACACG+GGG + chr3.4:40585274-40585293 None:intergenic 50.0%
CCATAAGAGTTACGGTGGCA+TGG - chr3.4:40588738-40588757 MS.gene22200:CDS 50.0%
CCATGCCACCGTAACTCTTA+TGG + chr3.4:40588741-40588760 None:intergenic 50.0%
CCCAATAGCTTGAGCAACAC+GGG + chr3.4:40585275-40585294 None:intergenic 50.0%
CCCCAATAGCTTGAGCAACA+CGG + chr3.4:40585276-40585295 None:intergenic 50.0%
CGCTTATTAGGCAAGCAGAG+AGG - chr3.4:40588155-40588174 MS.gene22200:CDS 50.0%
CGCTTCTCCAATTGCTGAAG+AGG - chr3.4:40586020-40586039 MS.gene22200:intron 50.0%
CGGGGTTGAATGAACCCAAA+TGG + chr3.4:40585256-40585275 None:intergenic 50.0%
CTCGGGACAGGCAAATACTT+GGG - chr3.4:40588430-40588449 MS.gene22200:CDS 50.0%
CTGGATAATGCGATGGTTGC+TGG - chr3.4:40587836-40587855 MS.gene22200:intron 50.0%
CTGGCCTAAAATACCGCACT+AGG + chr3.4:40586265-40586284 None:intergenic 50.0%
CTTATGGAGGCTGATCCTGA+AGG - chr3.4:40585784-40585803 MS.gene22200:intron 50.0%
GAATATGCTGCTGCTGGTCA+TGG - chr3.4:40585946-40585965 MS.gene22200:intron 50.0%
GAGTGATTCTGTCAACCACC+AGG + chr3.4:40585168-40585187 None:intergenic 50.0%
GATACTGGGGAAGGGAACTT+AGG - chr3.4:40586066-40586085 MS.gene22200:intron 50.0%
GATTGACAGATGTGTGCCGA+TGG - chr3.4:40586702-40586721 MS.gene22200:intron 50.0%
GCATAGAGGAGCAACTAACC+GGG - chr3.4:40588681-40588700 MS.gene22200:CDS 50.0%
GCCGAGAATTTGTGTAAGCG+TGG + chr3.4:40588398-40588417 None:intergenic 50.0%
GCTCTTGAATATGCTGCTGC+TGG - chr3.4:40585940-40585959 MS.gene22200:intron 50.0%
GCTTATCTGAGCGAAAGGCT+GGG - chr3.4:40585010-40585029 MS.gene22200:CDS 50.0%
GGAGAGATTAGATCGTGCCT+TGG - chr3.4:40586777-40586796 MS.gene22200:intron 50.0%
GGATCTTAAGACCCGGCTTA+TGG - chr3.4:40585768-40585787 MS.gene22200:intron 50.0%
GGCATAGAGGAGCAACTAAC+CGG - chr3.4:40588680-40588699 MS.gene22200:CDS 50.0%
GGGAAGACGACGTAATGCAT+GGG - chr3.4:40586529-40586548 MS.gene22200:intron 50.0%
GGGGAATGAGTCTAGTATGC+TGG - chr3.4:40586192-40586211 MS.gene22200:intron 50.0%
GGTACTGCTGATGTTAGTGG+GGG - chr3.4:40586087-40586106 MS.gene22200:intron 50.0%
GTACTGCTGATGTTAGTGGG+GGG - chr3.4:40586088-40586107 MS.gene22200:intron 50.0%
GTACTGCTGCAACCAATAGG+TGG - chr3.4:40585590-40585609 MS.gene22200:intron 50.0%
GTGAGGATCCGTTGTTTGCT+GGG - chr3.4:40585854-40585873 MS.gene22200:intron 50.0%
GTGGGGATTTGCATGTAGTG+CGG - chr3.4:40588179-40588198 MS.gene22200:CDS 50.0%
GTGGTTGACAGAATCACTCC+TGG - chr3.4:40585169-40585188 MS.gene22200:CDS 50.0%
TACTACGCCAGACATAGCTC+GGG + chr3.4:40588912-40588931 None:intergenic 50.0%
TATGTTCCCTACGACAGAGC+TGG - chr3.4:40586819-40586838 MS.gene22200:CDS 50.0%
TCGACCACTGTCTGATTGGA+CGG - chr3.4:40584960-40584979 MS.gene22200:CDS 50.0%
TCGGGACAGGCAAATACTTG+GGG - chr3.4:40588431-40588450 MS.gene22200:CDS 50.0%
TCGGTCCATAAGAGTTACGG+TGG - chr3.4:40588733-40588752 MS.gene22200:CDS 50.0%
TCTGGCAGCGCATTCATTCT+TGG - chr3.4:40588512-40588531 MS.gene22200:CDS 50.0%
TCTTAAGACCCGGCTTATGG+AGG - chr3.4:40585771-40585790 MS.gene22200:intron 50.0%
TGCTTATCTGAGCGAAAGGC+TGG - chr3.4:40585009-40585028 MS.gene22200:CDS 50.0%
TGGTAGGGAACCCATTCACA+TGG - chr3.4:40586722-40586741 MS.gene22200:intron 50.0%
TGTCACACAACCGCTCAAAC+AGG - chr3.4:40585375-40585394 MS.gene22200:intron 50.0%
TTAACCACCTGCAACACTCC+TGG + chr3.4:40587604-40587623 None:intergenic 50.0%
TTACGGTGGCATGGGATTCA+AGG - chr3.4:40588747-40588766 MS.gene22200:CDS 50.0%
TTAGGCAAGCAGAGAGGAGT+GGG - chr3.4:40588161-40588180 MS.gene22200:CDS 50.0%
TTCCGAAGGGACATCAGCAA+CGG - chr3.4:40587672-40587691 MS.gene22200:intron 50.0%
! ACAGATGTGTGCCGATGGTA+GGG - chr3.4:40586707-40586726 MS.gene22200:intron 50.0%
! CCCGTGTTGCTCAAGCTATT+GGG - chr3.4:40585272-40585291 MS.gene22200:CDS 50.0%
! CCGTGTTGCTCAAGCTATTG+GGG - chr3.4:40585273-40585292 MS.gene22200:CDS 50.0%
! CTTGGCCCGGGAATATTTTG+AGG - chr3.4:40587361-40587380 MS.gene22200:intron 50.0%
! GGCACTAGTCTGAGCAGAAT+AGG + chr3.4:40586877-40586896 None:intergenic 50.0%
! GGGACTTCATTGGCTGTCAT+GGG - chr3.4:40588702-40588721 MS.gene22200:CDS 50.0%
! GTGAATGGGTTCCCTACCAT+CGG + chr3.4:40586721-40586740 None:intergenic 50.0%
! GTGAGCATTGCTGCATCAAC+CGG + chr3.4:40588376-40588395 None:intergenic 50.0%
! GTTTTGCAACCGAATGGGTG+CGG - chr3.4:40587987-40588006 MS.gene22200:CDS 50.0%
! TGAGACAGGTATGTGCCACT+TGG - chr3.4:40587343-40587362 MS.gene22200:intron 50.0%
! TGAGGATCCGTTGTTTGCTG+GGG - chr3.4:40585855-40585874 MS.gene22200:intron 50.0%
! TGGCTCACTTTGGAAGAAGG+GGG - chr3.4:40584893-40584912 MS.gene22200:intron 50.0%
!! AATAGTACTGGTCGGAGTGG+TGG - chr3.4:40586374-40586393 MS.gene22200:intron 50.0%
!! ACGAAGGACTTGGTGAAACG+CGG - chr3.4:40588940-40588959 MS.gene22200:CDS 50.0%
!! ATCACCGGTTCACTCTTCAC+AGG + chr3.4:40585625-40585644 None:intergenic 50.0%
!! GCACGATGGAGTATTGGAAC+AGG - chr3.4:40588964-40588983 MS.gene22200:CDS 50.0%
!! GCATAAGGGTATTGCTGGAC+AGG - chr3.4:40585822-40585841 MS.gene22200:intron 50.0%
!!! AAGAAGCGCCTTTTAGCAGC+AGG + chr3.4:40585073-40585092 None:intergenic 50.0%
!!! GGCTTGGTTTTGCAACCGAA+TGG - chr3.4:40587981-40588000 MS.gene22200:CDS 50.0%
!!! TTTTAGGGCAGCTGAAGCTG+AGG - chr3.4:40588261-40588280 MS.gene22200:CDS 50.0%
!!! TTTTTTACGCGCCTTTGCGG+AGG + chr3.4:40587273-40587292 None:intergenic 50.0%
AACTCGGGGCTGAAACCATC+AGG + chr3.4:40587542-40587561 None:intergenic 55.0%
AAGGATCCACCGCACCCATT+CGG + chr3.4:40587999-40588018 None:intergenic 55.0%
ACGGGTTCTCACTGACAAGG+AGG - chr3.4:40584979-40584998 MS.gene22200:CDS 55.0%
AGCCCTCGCCCTGGAATAAT+CGG + chr3.4:40588076-40588095 None:intergenic 55.0%
AGGATCACGCAGCCACCTAT+TGG + chr3.4:40585605-40585624 None:intergenic 55.0%
AGGATCAGCCTCCATAAGCC+GGG + chr3.4:40585782-40585801 None:intergenic 55.0%
ATGCCACCCATCAGTTGCCA+AGG + chr3.4:40586797-40586816 None:intergenic 55.0%
CAACCACCAGAAGCAAGCCA+AGG + chr3.4:40589015-40589034 None:intergenic 55.0%
CACGCAGGTTACCTAAGCCT+CGG + chr3.4:40586223-40586242 None:intergenic 55.0%
CAGAGTCTGTCACCGCTTGT+CGG + chr3.4:40586682-40586701 None:intergenic 55.0%
CAGCAGCATCAGTGTTCTCC+AGG + chr3.4:40584931-40584950 None:intergenic 55.0%
CAGGATCAGCCTCCATAAGC+CGG + chr3.4:40585783-40585802 None:intergenic 55.0%
CCAAGTATTTGCCTGTCCCG+AGG + chr3.4:40588432-40588451 None:intergenic 55.0%
CCATCTGGACATATGGGTGC+AGG - chr3.4:40585219-40585238 MS.gene22200:CDS 55.0%
CCCATCCTTCATCACGTTGG+CGG + chr3.4:40585122-40585141 None:intergenic 55.0%
CCGCCAACGTGATGAAGGAT+GGG - chr3.4:40585119-40585138 MS.gene22200:CDS 55.0%
CCTCGGGACAGGCAAATACT+TGG - chr3.4:40588429-40588448 MS.gene22200:CDS 55.0%
CCTGCACATGCCTCTAGTCT+AGG + chr3.4:40587018-40587037 None:intergenic 55.0%
CCTGCACCCATATGTCCAGA+TGG + chr3.4:40585222-40585241 None:intergenic 55.0%
CGACCACTGTCTGATTGGAC+GGG - chr3.4:40584961-40584980 MS.gene22200:CDS 55.0%
CGTAACGACGCTAGCTGTTC+GGG + chr3.4:40587147-40587166 None:intergenic 55.0%
CTAGACTCATTCCCCTCGAC+AGG + chr3.4:40586187-40586206 None:intergenic 55.0%
CTAGTATGCTGGAACTGCCG+AGG - chr3.4:40586203-40586222 MS.gene22200:intron 55.0%
GAACCCGTCCAATCAGACAG+TGG + chr3.4:40584967-40584986 None:intergenic 55.0%
GATAAGTGTCCGGGACCTGA+TGG - chr3.4:40587524-40587543 MS.gene22200:intron 55.0%
GATCGTGCCTTGGCAACTGA+TGG - chr3.4:40586787-40586806 MS.gene22200:CDS 55.0%
GATGTAACGGCAGGTCCTGT+TGG - chr3.4:40586156-40586175 MS.gene22200:intron 55.0%
GATTCCGCCCCAGCAAACAA+CGG + chr3.4:40585865-40585884 None:intergenic 55.0%
GCGAAAGGCTGGGCAATCTT+TGG - chr3.4:40585020-40585039 MS.gene22200:CDS 55.0%
GGCACACCCTCTTCAGCAAT+TGG + chr3.4:40586030-40586049 None:intergenic 55.0%
GGGGAAGACGACGTAATGCA+TGG - chr3.4:40586528-40586547 MS.gene22200:intron 55.0%
GTAACGACGCTAGCTGTTCG+GGG + chr3.4:40587146-40587165 None:intergenic 55.0%
GTACCAACCCGAGCTATGTC+TGG - chr3.4:40588902-40588921 MS.gene22200:CDS 55.0%
GTCCGTTGCTGATGTCCCTT+CGG + chr3.4:40587677-40587696 None:intergenic 55.0%
GTGGTGGTTTAGCCCTCTAC+TGG - chr3.4:40586390-40586409 MS.gene22200:intron 55.0%
GTGTTGGGAATGAGTGCGCA+GGG - chr3.4:40585904-40585923 MS.gene22200:intron 55.0%
TACGTCGTCTTCCCCCTTCT+GGG + chr3.4:40586523-40586542 None:intergenic 55.0%
TAGGCAAGCAGAGAGGAGTG+GGG - chr3.4:40588162-40588181 MS.gene22200:CDS 55.0%
TGCGATGGTTGCTGGTGAAG+TGG - chr3.4:40587844-40587863 MS.gene22200:intron 55.0%
TGGACAGGCTACACAGAGTG+AGG - chr3.4:40585837-40585856 MS.gene22200:intron 55.0%
TGGTCGGGCCGATTATTCCA+GGG - chr3.4:40588065-40588084 MS.gene22200:CDS 55.0%
TTACGTCGTCTTCCCCCTTC+TGG + chr3.4:40586524-40586543 None:intergenic 55.0%
TTGGGGCTACCCTCCATGAT+TGG - chr3.4:40588448-40588467 MS.gene22200:CDS 55.0%
TTGGTCGGGCCGATTATTCC+AGG - chr3.4:40588064-40588083 MS.gene22200:CDS 55.0%
! CCCCGTGTTGCTCAAGCTAT+TGG - chr3.4:40585271-40585290 MS.gene22200:CDS 55.0%
! CCTAGACTAGAGGCATGTGC+AGG - chr3.4:40587015-40587034 MS.gene22200:CDS 55.0%
! CTGCACTGATACGTCCACCA+AGG + chr3.4:40585732-40585751 None:intergenic 55.0%
! GACAGATGTGTGCCGATGGT+AGG - chr3.4:40586706-40586725 MS.gene22200:intron 55.0%
! GGGGACTTCATTGGCTGTCA+TGG - chr3.4:40588701-40588720 MS.gene22200:CDS 55.0%
! TGCTGCTGGTCATGGCTTTG+AGG - chr3.4:40585954-40585973 MS.gene22200:intron 55.0%
! TGGACGGGTTCTCACTGACA+AGG - chr3.4:40584976-40584995 MS.gene22200:CDS 55.0%
! TGTGACAGAGGCGACTAGCT+TGG - chr3.4:40588819-40588838 MS.gene22200:CDS 55.0%
!! ATGGGGATAACGGATTCCCC+TGG + chr3.4:40588102-40588121 None:intergenic 55.0%
!! CAACCTTGGCTTGCTTCTGG+TGG - chr3.4:40589009-40589028 MS.gene22200:CDS 55.0%
!! TCTTCCAGGAGTGTTGCAGG+TGG - chr3.4:40587597-40587616 MS.gene22200:intron 55.0%
AACGGCAGGTCCTGTTGGTC+AGG - chr3.4:40586161-40586180 MS.gene22200:intron 60.0%
ACGCCAGACATAGCTCGGGT+TGG + chr3.4:40588908-40588927 None:intergenic 60.0%
ACGTGATGAAGGATGGGCCC+TGG - chr3.4:40585125-40585144 MS.gene22200:CDS 60.0%
CGACAAGCGGTGACAGACTC+TGG - chr3.4:40586680-40586699 MS.gene22200:intron 60.0%
CGATGCCGCCAACGTGATGA+AGG - chr3.4:40585114-40585133 MS.gene22200:CDS 60.0%
CGGGGTCACAAGCTTGACCT+CGG + chr3.4:40587128-40587147 None:intergenic 60.0%
CTGTTGGTCAGGCCTGTCGA+GGG - chr3.4:40586172-40586191 MS.gene22200:intron 60.0%
GCCGCCAACGTGATGAAGGA+TGG - chr3.4:40585118-40585137 MS.gene22200:CDS 60.0%
GGAGGCTGATCCTGAAGGCT+GGG - chr3.4:40585789-40585808 MS.gene22200:intron 60.0%
GGCCGATTATTCCAGGGCGA+GGG - chr3.4:40588071-40588090 MS.gene22200:CDS 60.0%
GGGCACACCGAGAGCTATAG+AGG - chr3.4:40586756-40586775 MS.gene22200:intron 60.0%
GGGCCCATCCTTCATCACGT+TGG + chr3.4:40585125-40585144 None:intergenic 60.0%
GGGCTGAAACCATCAGGTCC+CGG + chr3.4:40587536-40587555 None:intergenic 60.0%
GTGCCTTGGCAACTGATGGG+TGG - chr3.4:40586791-40586810 MS.gene22200:CDS 60.0%
TCGGTGTACGAGGCTGCATC+TGG - chr3.4:40588307-40588326 MS.gene22200:CDS 60.0%
TCTATTGAAGGCGGGGCGTG+AGG - chr3.4:40588546-40588565 MS.gene22200:CDS 60.0%
TGCTGGAACTGCCGAGGCTT+AGG - chr3.4:40586209-40586228 MS.gene22200:intron 60.0%
TGGAGGCTGATCCTGAAGGC+TGG - chr3.4:40585788-40585807 MS.gene22200:intron 60.0%
TGTTGGTCAGGCCTGTCGAG+GGG - chr3.4:40586173-40586192 MS.gene22200:intron 60.0%
TTGCAACCGAATGGGTGCGG+TGG - chr3.4:40587990-40588009 MS.gene22200:CDS 60.0%
! AGGGGGCATGACTCTCAACC+TGG - chr3.4:40584910-40584929 MS.gene22200:intron 60.0%
! GCATTCAGGTGGGGGCATAG+AGG - chr3.4:40588667-40588686 MS.gene22200:CDS 60.0%
! GGATCCGTTGTTTGCTGGGG+CGG - chr3.4:40585858-40585877 MS.gene22200:intron 60.0%
! GGTGTTGGGAATGAGTGCGC+AGG - chr3.4:40585903-40585922 MS.gene22200:intron 60.0%
! TGCTGAAGAGGGTGTGCCTG+TGG - chr3.4:40586032-40586051 MS.gene22200:intron 60.0%
!! AGGTATGTGCCACTTGGCCC+GGG - chr3.4:40587349-40587368 MS.gene22200:intron 60.0%
!! CAGGTATGTGCCACTTGGCC+CGG - chr3.4:40587348-40587367 MS.gene22200:intron 60.0%
CCTCGACAGGCCTGACCAAC+AGG + chr3.4:40586174-40586193 None:intergenic 65.0%
CCTGTTGGTCAGGCCTGTCG+AGG - chr3.4:40586171-40586190 MS.gene22200:intron 65.0%
CGCGGCGCACGATGGAGTAT+TGG - chr3.4:40588958-40588977 MS.gene22200:CDS 65.0%
CTCGGCGTGCAAGCAGTCCT+CGG - chr3.4:40588412-40588431 MS.gene22200:CDS 65.0%
GCTGGGGCGGAATCATCTGC+TGG - chr3.4:40585871-40585890 MS.gene22200:intron 65.0%
GGGCCGATTATTCCAGGGCG+AGG - chr3.4:40588070-40588089 MS.gene22200:CDS 65.0%
GTGCAAGCAGTCCTCGGGAC+AGG - chr3.4:40588418-40588437 MS.gene22200:CDS 65.0%
TCGGCGTGCAAGCAGTCCTC+GGG - chr3.4:40588413-40588432 MS.gene22200:CDS 65.0%
TGGTGAAACGCGGCGCACGA+TGG - chr3.4:40588950-40588969 MS.gene22200:CDS 65.0%
! CGTTGGCGGCATCGAGACGA+TGG + chr3.4:40585108-40585127 None:intergenic 65.0%
! CAGGGCGAGGGCTGCGCCAG+GGG - chr3.4:40588083-40588102 MS.gene22200:CDS 80.0%
! CCAGGGCGAGGGCTGCGCCA+GGG - chr3.4:40588082-40588101 MS.gene22200:CDS 80.0%
! TCCAGGGCGAGGGCTGCGCC+AGG - chr3.4:40588081-40588100 MS.gene22200:CDS 80.0%
! CCCTGGCGCAGCCCTCGCCC+TGG + chr3.4:40588085-40588104 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 40584851 40589093 40584851 ID=MS.gene22200
chr3.4 mRNA 40584851 40589093 40584851 ID=MS.gene22200.t1;Parent=MS.gene22200
chr3.4 exon 40587857 40589093 40587857 ID=MS.gene22200.t1.exon1;Parent=MS.gene22200.t1
chr3.4 CDS 40587857 40589093 40587857 ID=cds.MS.gene22200.t1;Parent=MS.gene22200.t1
chr3.4 exon 40587015 40587108 40587015 ID=MS.gene22200.t1.exon2;Parent=MS.gene22200.t1
chr3.4 CDS 40587015 40587108 40587015 ID=cds.MS.gene22200.t1;Parent=MS.gene22200.t1
chr3.4 exon 40586779 40586870 40586779 ID=MS.gene22200.t1.exon3;Parent=MS.gene22200.t1
chr3.4 CDS 40586779 40586870 40586779 ID=cds.MS.gene22200.t1;Parent=MS.gene22200.t1
chr3.4 exon 40585406 40585558 40585406 ID=MS.gene22200.t1.exon4;Parent=MS.gene22200.t1
chr3.4 CDS 40585406 40585558 40585406 ID=cds.MS.gene22200.t1;Parent=MS.gene22200.t1
chr3.4 exon 40584959 40585300 40584959 ID=MS.gene22200.t1.exon5;Parent=MS.gene22200.t1
chr3.4 CDS 40584959 40585300 40584959 ID=cds.MS.gene22200.t1;Parent=MS.gene22200.t1
chr3.4 exon 40584851 40584858 40584851 ID=MS.gene22200.t1.exon6;Parent=MS.gene22200.t1
chr3.4 CDS 40584851 40584858 40584851 ID=cds.MS.gene22200.t1;Parent=MS.gene22200.t1
Gene Sequence

>MS.gene22200

ATGTCTGCGGATCCCAAATCTCCAATGAATCTCAACATTGAATGGCTCACTTTGGAAGAAGGGGGCATGACTCTCAACCTGGAGAACACTGATGCTGCTGTTACAATTCTCGACCACTGTCTGATTGGACGGGTTCTCACTGACAAGGAGGTGCATTTTGCTTATCTGAGCGAAAGGCTGGGCAATCTTTGGCAACCAGTGAAAGGGGTTACAATTCTGCCTGCTGCTAAAAGGCGCTTCTTGTTCCAATTTAACCATCGTCTCGATGCCGCCAACGTGATGAAGGATGGGCCCTGGCTGTATGATAATTGTAACCTGGTGGTTGACAGAATCACTCCTGGTATGGTCCCTAATGACGTAGCACTTAACCATCTGGACATATGGGTGCAGGTTCACAATCTTCCATTTGGGTTCATTCAACCCCGTGTTGCTCAAGCTATTGGGGCATATCTTGGCGAGTTCAAAGAGTATGATGAGAAGAACACTCTGCACAGTTCCTTTATGATGCTGAAAGTTCACATTGATGTCACACAACCGCTCAAACAGGATTGGAAGGTGAGGGCTCGTAATAGTGAATGGGTCTCAGTTGTCTTTAAGTACGAAAGGCTCTGGACTTTTTGTTTTGCTTGTGGTGTGCTGGGTCATACCGACCGTACATGTGAAAAATTGTTTGAGAAGGACTCTGATGATGGTGTAAGAGGATGGGATGCGAGTCTGAAACCATCTTCTCGGAAACTAGGTACTGCTGCAACCAATAGGTGGCTGCGTGATCCTGTGAAGAGTGAACCGGTGATTCCTGAACAACATAGTGCTCCGTTTACACGAGCTGCTGTCAATCCAAATGCAATGTCTGGTGGTACTACTACTGAGATGGTTATCCTTGGTGGACGTATCAGTGCAGTTCATTCTGAAATCAAGGATCTTAAGACCCGGCTTATGGAGGCTGATCCTGAAGGCTGGGCTAATTGGATGCATAAGGGTATTGCTGGACAGGCTACACAGAGTGAGGATCCGTTGTTTGCTGGGGCGGAATCATCTGCTGGAAAACATCTGGTGTTGGGAATGAGTGCGCAGGGCAGTGATCTGCAAGCTCTTGAATATGCTGCTGCTGGTCATGGCTTTGAGGACATGACAACAAAGTTTAAGAAAAGGAAACGCAACATGAAAGACGCTTCTCCAATTGCTGAAGAGGGTGTGCCTGTGGCTGAATTAATGGATACTGGGGAAGGGAACTTAGGTACTGCTGATGTTAGTGGGGGGACTCAAATTGTGTCTGTTTTTAATAATCTTGTATTTGCTGAAAATGATGTAACGGCAGGTCCTGTTGGTCAGGCCTGTCGAGGGGAATGAGTCTAGTATGCTGGAACTGCCGAGGCTTAGGTAACCTGCGTGTAGTTCCAAAATTGAAGTACCTAGTGCGGTATTTTAGGCCAGATGTTTTATTTCTTTCCGAGACTCTCGTCTCCTCTAATAATAGTGAAGCTTTTCGTTATATGCTTGGTTATGTTTCTTGTCTTGCTGTTAATAGTACTGGTCGGAGTGGTGGTTTAGCCCTCTACTGGAATACCTCTTTCAATTGTACTATAATTAATTACTCAAATAATCATATATCTGTTCGTATTGATGATCATGCTAAGGGTCCTTGGCAATTTACCGGGTATTATGGATTCCCAGAAGGGGGAAGACGACGTAATGCATGGGATTATTTGCATGGGTTGGCAAGAGATGTGAGTTTACCGTGGTGTATTGGTGGGGATTTTAACGACATCTTGTTTGAGCATGAGAAATCTGGCATGACAGATAGAGCATACTGGTTAATTAATGGGTTCCGACAAGCGGTGACAGACTCTGGATTGACAGATGTGTGCCGATGGTAGGGAACCCATTCACATGGTTTAAAAGTATGGGCACACCGAGAGCTATAGAGGAGAGATTAGATCGTGCCTTGGCAACTGATGGGTGGCATGTTATGTTCCCTACGACAGAGCTGGAAAATTTGGTTTCTCATTCGTCGGATCATTACCCTATTCTGCTCAGACTAGTGCCGAAAGTTATACGTGGTGTACGACGAACATTTAAGTATGAAAATGTTTAGCAAACAGAACCTAGATTTAGAGATGTGGTTGAAACTAGCTGGCAGCAAAGTGCATACTGTGATGTCATACCTAGACTAGAGGCATGTGCAGGTGATTTAACCAATTGGAGTCGACATAATTGTAACAGGTTGAAGGCTGAAATTGAAACATGTCGTAAGGCGTTGACTGAATGTCGTAACCGAGGTCAAGCTTGTGACCCCGAACAGCTAGCGTCGTTACGTAACCAGATGAATCAATTGTTAATACAGGATGATAATTATTGGAGCAACGTGCAAAAGTTCATTGGTATTAGGATGGTGATCTTAATACGAAGTTTTTTCATGCCTCCGCAAAGGCGCGTAAAAAAGTGAACCGTATTATAGCCTTTGAAGCGCCAGATGTTACTCGAGTTACGGATGAGACAGGTATGTGCCACTTGGCCCGGGAATATTTTGAGGAGTTGTTCCAAGGACAGCTGAGCATATATTCACCCCTAATTAATGCTTTACATCCAGTTGTTACTGACACCGATAATTTGGAACTCACGACACCTTTTCAAATAGATGAATTTAAAGAAGCCATGTTTGCTATGCATTCGGATAAGTGTCCGGGACCTGATGGTTTCAGCCCCGAGTTCTACAATCATTTCTGGAACACGTGTAGCACTGATATCTTCCAGGAGTGTTGCAGGTGGTTAAATGAAAATCAGTTTCCCCCATCCTTAAACTCCACTAATATTTCACTCATTCCGAAGGGACATCAGCAACGGACAATGAAGGATTGGAGGCCAATTGCCTTGTGCAACGTGTTGTATAAATTAGTTTCTAAGGTTCTTGCCAACAGGTTGAAAAAGGTTCTTAATAAATGCATTTCTGAGAGTCAATCTGCCTTTGTACCTGGCAGATCAATTCTGGATAATGCGATGGTTGCTGGTGAAGTGGTTCATTATATGAAAACAAATAGGAGGCGGCTCAATACAAATGTTGCTCTGAAGCTTGATATAAGCAAGGTGTGCGATCGAATTGATTGGGTATATTTGAAAGAAGTAATGTTGAGGCTTGGTTTTGCAACCGAATGGGTGCGGTGGATCCTTATGTGTGTCGAGATTGTGGATTACTCAGTGTTGGTTAATAATAACTTGGTCGGGCCGATTATTCCAGGGCGAGGGCTGCGCCAGGGGAATCCGTTATCCCCATACCTTTTTATTCTCTGTGCAGAAGGATTGATTGCGCTTATTAGGCAAGCAGAGAGGAGTGGGGATTTGCATGTAGTGCGGATATGTACTAATGCTCCAGTGGTATCCCATCTTTTGTTCGCTAATGATTGTTTTCTATTTTTTAGGGCAGCTGAAGCTGAGGCACACACCATTAAACATATTCTATCGGTGTACGAGGCTGCATCTGGTCAAGCCATCAGTCTCCCCAAATCTGAAGTATATTACATTAGTCCGGTTGATGCAGCAATGCTCACCACGCTTACACAAATTCTCGGCGTGCAAGCAGTCCTCGGGACAGGCAAATACTTGGGGCTACCCTCCATGATTGGTAGAAACAAACAGGCAACTTTTGGATATATTAAGGATCGAATCTGGCAGCGCATTCATTCTTGGAGCAGTAAGTGTCTATTGAAGGCGGGGCGTGAGGTAATGATTAAATCGGTGCTGCAAGCTATTCCGACATATGTGATGAGCATTTTTCTTTTGCCAAACACTTTCACAGTTGACATAGAAAGAATAATAAACGCATTCAGGTGGGGGCATAGAGGAGCAACTAACCGGGGACTTCATTGGCTGTCATGGGAAAAGTTGTCGGTCCATAAGAGTTACGGTGGCATGGGATTCAAGGATCTCACCTCTTTTAACGCTGCTATGCTTGGTAAACAAGCTTGGAAATTTGTGACAGAGGCGACTAGCTTGGTGTCGCGTCTTTTCAAGGCAAGGTATTATTCGCATTCAGACTTTTTTGACGCAAATATTGGTACCAACCCGAGCTATGTCTGGCGTAGTATTCTAAGTACGAAGGACTTGGTGAAACGCGGCGCACGATGGAGTATTGGAACAGGTACTGACATTCCTCTCATGAATCAACCTTGGCTTGCTTCTGGTGGTTGTATATCAGTCCATAATACAGGTAACACACAATTTCGGTCTATATCTGTCAGTGATTTAA
Protein sequence

>MS.gene22200.t1

MSADPKSPMNLNIEWLTLEEGGMTLNLENTDAAVTILDHCLIGRVLTDKEVHFAYLSERLGNLWQPVKGVTILPAAKRRFLFQFNHRLDAANVMKDGPWLYDNCNLVVDRITPGMVPNDVALNHLDIWVQVHNLPFGFIQPRVAQAIGAYLGEFKEYDEKNTLHSSFMMLKVHIDVTQPLKQDWKVRARNSEWVSVVFKYERLWTFCFACGVLGHTDRTCEKLFEKDSDDGVRGWDASLKPSSRKLGTAATNRWLRDPVKSEPVIPEQHSAPFTRAAVNPNAMSGGTTTEMVILGGRISAVHSEIKDLKTRLMEADPEGWANWMHKGIAGQATQSEDPLFAGAESSAGKHLVLGMSAQGSDLQALEYAAAGHGFEDMTTKFKKRKRNMKDASPIAEEGVPVAELMDTGEGNLELENLVSHSSDHYPILLRLVPKVIRGVRRTFKLKAEIETCRKALTECRNRGQACDPEQLASLPMLTTLTQILGVQAVLGTGKYLGLPSMIGRNKQATFGYIKDRIWQRIHSWSIDIERIINAFRWGHRGATNRGLHWLSWEKLSVHKSYGGMGFKDLTSFNAAMLGKQAWKFVTEATSLVSRLFKARYYSHSDFFDANIGTNPSYVWRSILSTKDLVKRGARWSIGTVI