AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93396

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93396.t1 MTR_0010s0370 44.776 134 68 2 1 132 4 133 4.96e-35 125
MS.gene93396.t1 MTR_0010s0350 44.776 134 68 2 1 132 4 133 4.96e-35 125
MS.gene93396.t1 MTR_1g036720 47.706 109 55 1 1 109 4 110 6.57e-30 109
MS.gene93396.t1 MTR_3g053920 32.258 155 87 2 31 168 34 187 7.00e-25 101
MS.gene93396.t1 MTR_2g061500 41.489 94 55 0 31 124 34 127 5.05e-23 92.8
MS.gene93396.t1 MTR_4g103530 40.000 80 48 0 52 131 1 80 5.18e-16 75.1
MS.gene93396.t1 MTR_6g033215 25.564 133 93 1 33 165 129 255 1.23e-13 70.5
MS.gene93396.t1 MTR_7g011710 35.000 80 52 0 52 131 1 80 7.45e-13 65.5
MS.gene93396.t1 MTR_7g406910 26.050 119 88 0 15 133 93 211 5.49e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 77 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTAATTTATTGACAATTA+TGG 0.092172 2.4:-26943272 None:intergenic
GATGGCCGCACCCTTATTCT+AGG 0.231651 2.4:+26942698 MS.gene93396:CDS
TCATGGACTTGTACCCAAAA+AGG 0.250046 2.4:-26942770 None:intergenic
CCTAATTTATTGACAATTAT+GGG 0.259040 2.4:-26943271 None:intergenic
AAGAAAAGATGGCCGAATTT+TGG 0.275574 2.4:+26942564 MS.gene93396:CDS
GTTGCAGAAGCCCTAGAATA+AGG 0.291366 2.4:-26942709 None:intergenic
CCCATAATTGTCAATAAATT+AGG 0.293290 2.4:+26943271 MS.gene93396:CDS
AGAAACAACAATGGCGGTTA+TGG 0.332302 2.4:+26943130 MS.gene93396:CDS
CGAAGGTGAAGAAGATGAAT+TGG 0.353109 2.4:+26942436 MS.gene93396:CDS
TTCATCATATGGAATCTAAC+TGG 0.369014 2.4:-26942542 None:intergenic
AGGAAGTACCACAATATCTA+TGG 0.391692 2.4:+26943501 MS.gene93396:CDS
TTTGCAAATCCTACTGATGA+TGG 0.397064 2.4:+26943067 MS.gene93396:CDS
AGTGTCACGTAAAGAAAATA+AGG 0.402193 2.4:+26943348 MS.gene93396:CDS
TCACCCTCGCGACATGGAAC+GGG 0.402515 2.4:+26942649 MS.gene93396:CDS
GTGATTGAGTGGGACAGATT+TGG 0.405066 2.4:-26942744 None:intergenic
TGATTGAGTGGGACAGATTT+GGG 0.415737 2.4:-26942743 None:intergenic
ATATTGTGGTACTTCCTTGT+GGG 0.415854 2.4:-26943495 None:intergenic
AGTTAATGAGGCAGAACTAA+TGG 0.425797 2.4:+26943387 MS.gene93396:CDS
TTATGGGCGGCTTTGACTGC+TGG 0.430010 2.4:-26943255 None:intergenic
TCGCAGGATCCAGCTTTAGA+AGG 0.431704 2.4:-26944296 None:intergenic
GCAGACAGGACGCCAAAATT+CGG 0.431861 2.4:-26942576 None:intergenic
GTTGCACCCGCAGACCTAAC+CGG 0.446088 2.4:-26943181 None:intergenic
TTCACCCTCGCGACATGGAA+CGG 0.452471 2.4:+26942648 MS.gene93396:CDS
GGGAAATAAAGTGGATGGAT+TGG 0.481013 2.4:-26943323 None:intergenic
TTGATAGAAACTTTGCAGAC+AGG 0.491669 2.4:-26942590 None:intergenic
AATTGGAAAAGATATAGGTT+AGG 0.492089 2.4:-26942623 None:intergenic
GGAGCGTCTTATGTCCTGGT+AGG 0.495193 2.4:+26942500 MS.gene93396:CDS
GCTGCGAGAGGACGAAGGTC+CGG 0.497908 2.4:+26943162 MS.gene93396:CDS
ATGGCCGCACCCTTATTCTA+GGG 0.498025 2.4:+26942699 MS.gene93396:CDS
TTGCAGAAGCCCTAGAATAA+GGG 0.499234 2.4:-26942708 None:intergenic
CAAATAACTAATGACGTCGT+TGG 0.505120 2.4:+26942479 MS.gene93396:CDS
GAAGGTCCGGTTAGGTCTGC+GGG 0.506044 2.4:+26943175 MS.gene93396:CDS
GAGAGGACGAAGGTCCGGTT+AGG 0.506295 2.4:+26943167 MS.gene93396:CDS
CTGCAAAGTTTCTATCAAAG+AGG 0.508319 2.4:+26942595 MS.gene93396:CDS
GATATTGTGGTACTTCCTTG+TGG 0.516328 2.4:-26943496 None:intergenic
TATGGAGGGTGTACAACTTA+CGG 0.524468 2.4:+26943519 MS.gene93396:CDS
GGATCCAGCTTTAGAAGGAT+AGG 0.526706 2.4:-26944291 None:intergenic
CTTCTTCACCTTCGATGTAG+AGG 0.526719 2.4:-26942427 None:intergenic
GAATCATCATTATTGCACCT+TGG 0.530715 2.4:-26943442 None:intergenic
CCATATGATGAAAGAAAAGA+TGG 0.532686 2.4:+26942553 MS.gene93396:CDS
CGTTGGAGCGTCTTATGTCC+TGG 0.534608 2.4:+26942496 MS.gene93396:CDS
ACAAAAGCTAACGTCTCTGA+TGG 0.535912 2.4:+26943223 MS.gene93396:CDS
TATTGTGGTACTTCCTTGTG+GGG 0.538684 2.4:-26943494 None:intergenic
CCGTGAGAAAACGCCCTACC+AGG 0.539828 2.4:-26942514 None:intergenic
CGAAGGTCCGGTTAGGTCTG+CGG 0.542324 2.4:+26943174 MS.gene93396:CDS
TGACACTTGGGGAAATAAAG+TGG 0.551506 2.4:-26943332 None:intergenic
GATAGGAGAATGATCTGAAG+TGG 0.558491 2.4:-26944274 None:intergenic
GAGTGGGACAGATTTGGGTG+TGG 0.558713 2.4:-26942738 None:intergenic
GCGGGTGCAACACAGAATCC+AGG 0.561918 2.4:+26943193 MS.gene93396:CDS
ACTTGGGGAAATAAAGTGGA+TGG 0.563605 2.4:-26943328 None:intergenic
TCATGAACATGTAGTTAATG+AGG 0.568229 2.4:+26943375 MS.gene93396:CDS
GGGTTATCAAACAAGGTCCT+TGG 0.574921 2.4:+26942669 MS.gene93396:CDS
TGAGGCAGAACTAATGGAGG+AGG 0.575181 2.4:+26943393 MS.gene93396:CDS
GAGCGTCTTATGTCCTGGTA+GGG 0.576879 2.4:+26942501 MS.gene93396:CDS
TACAACCGACAGGAACATCA+TGG 0.578533 2.4:-26942787 None:intergenic
TACACCCTCCATAGATATTG+TGG 0.578568 2.4:-26943509 None:intergenic
ATAACCCGTTCCATGTCGCG+AGG 0.585720 2.4:-26942653 None:intergenic
AAGTACCACAATATCTATGG+AGG 0.601075 2.4:+26943504 MS.gene93396:CDS
CAAGTCCATGATGTTCCTGT+CGG 0.613180 2.4:+26942782 MS.gene93396:CDS
TTCGATGTAGAGGTGCTCCA+TGG 0.616106 2.4:-26942417 None:intergenic
ATGGCGGTTATGGCTCTAAG+TGG 0.622974 2.4:+26943140 MS.gene93396:CDS
GCTAGAGACATACAACCGAC+AGG 0.624032 2.4:-26942797 None:intergenic
AAAGCTAACGTCTCTGATGG+AGG 0.627202 2.4:+26943226 MS.gene93396:CDS
ATTCTAGGGCTTCTGCAACA+AGG 0.627922 2.4:+26942713 MS.gene93396:CDS
AAGTGGCTGCGAGAGGACGA+AGG 0.629283 2.4:+26943157 MS.gene93396:CDS
CTGATGATGGAACACGTATG+TGG 0.634398 2.4:+26943080 MS.gene93396:CDS
ATGGAGCACCTCTACATCGA+AGG 0.634843 2.4:+26942419 MS.gene93396:CDS
ATACGTGTTCCATCATCAGT+AGG 0.639811 2.4:-26943076 None:intergenic
TGGCTCTAAGTGGCTGCGAG+AGG 0.643985 2.4:+26943150 MS.gene93396:CDS
GAAGCCCTAGAATAAGGGTG+CGG 0.645404 2.4:-26942703 None:intergenic
TAATGAGGCAGAACTAATGG+AGG 0.662150 2.4:+26943390 MS.gene93396:CDS
TAACCCGTTCCATGTCGCGA+GGG 0.662783 2.4:-26942652 None:intergenic
AGTACCACAATATCTATGGA+GGG 0.670707 2.4:+26943505 MS.gene93396:CDS
ATGGAACGGGTTATCAAACA+AGG 0.671324 2.4:+26942662 MS.gene93396:CDS
GATGCAGTAAAGACCCCACA+AGG 0.673566 2.4:+26943481 MS.gene93396:CDS
AATTTATTGACAATTATGGG+CGG 0.677123 2.4:-26943268 None:intergenic
GTGCGGCCATCAAAAGACCA+AGG 0.696852 2.4:-26942686 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGGAGAAAAAATTTCTT+TGG + chr2.4:26943288-26943307 MS.gene93396:CDS 20.0%
!! CAAATAAAAAGAAACAACAA+TGG + chr2.4:26943121-26943140 MS.gene93396:CDS 20.0%
!! CCTAATTTATTGACAATTAT+GGG - chr2.4:26943274-26943293 None:intergenic 20.0%
!! GAAAAAATTGGAAAAGATAT+AGG - chr2.4:26942631-26942650 None:intergenic 20.0%
!! TAACTTTATTGGTGAATTTA+TGG + chr2.4:26942838-26942857 MS.gene93396:intron 20.0%
!! TCAATAAGGAAAAAAATATC+CGG - chr2.4:26943702-26943721 None:intergenic 20.0%
!! TCCTAATTTATTGACAATTA+TGG - chr2.4:26943275-26943294 None:intergenic 20.0%
! AATTGGAAAAGATATAGGTT+AGG - chr2.4:26942626-26942645 None:intergenic 25.0%
! AATTTATTGACAATTATGGG+CGG - chr2.4:26943271-26943290 None:intergenic 25.0%
! ATAAAAAGAAACAACAATGG+CGG + chr2.4:26943124-26943143 MS.gene93396:CDS 25.0%
! CCCATAATTGTCAATAAATT+AGG + chr2.4:26943271-26943290 MS.gene93396:CDS 25.0%
! GATGATATTACATTGAATAG+AGG - chr2.4:26943838-26943857 None:intergenic 25.0%
! GATTAATTAATCTTGCATTC+AGG - chr2.4:26944245-26944264 None:intergenic 25.0%
!! ACGAAATGAGTATTTTATGT+TGG + chr2.4:26943610-26943629 MS.gene93396:intron 25.0%
!!! GGATACACAACATTTTTTAT+CGG + chr2.4:26943561-26943580 MS.gene93396:intron 25.0%
!!! TATTTTACTGTTGATAGAGA+CGG + chr2.4:26943780-26943799 MS.gene93396:intron 25.0%
AAACAACTCGGTAACTTTAT+TGG + chr2.4:26942827-26942846 MS.gene93396:intron 30.0%
AAACCATTATAAAGCCAAGT+CGG - chr2.4:26944078-26944097 None:intergenic 30.0%
AAATATCCGGTTTATAGACA+CGG - chr2.4:26943689-26943708 None:intergenic 30.0%
AAGAAGATCAAGACAAAGAT+TGG + chr2.4:26942950-26942969 MS.gene93396:intron 30.0%
AATGCGACAAAGTTTCAATA+AGG - chr2.4:26943716-26943735 None:intergenic 30.0%
ACACATTAAAAAAGAGACCA+AGG + chr2.4:26943425-26943444 MS.gene93396:CDS 30.0%
AGTGTCACGTAAAGAAAATA+AGG + chr2.4:26943348-26943367 MS.gene93396:CDS 30.0%
ATCTTCTTAAACCTCATCAA+AGG - chr2.4:26942938-26942957 None:intergenic 30.0%
CATAAAATACTCATTTCGTC+CGG - chr2.4:26943609-26943628 None:intergenic 30.0%
CATAAAGGTAGCAAGAAAAT+TGG - chr2.4:26942885-26942904 None:intergenic 30.0%
CCATATGATGAAAGAAAAGA+TGG + chr2.4:26942553-26942572 MS.gene93396:CDS 30.0%
GTAAAAGGATATCCTTCTAA+AGG - chr2.4:26944138-26944157 None:intergenic 30.0%
TAAACCTCATCAAAGGTTTA+CGG - chr2.4:26942931-26942950 None:intergenic 30.0%
TCATGAACATGTAGTTAATG+AGG + chr2.4:26943375-26943394 MS.gene93396:CDS 30.0%
TGTTTCAAATATGAGCGATT+AGG + chr2.4:26942986-26943005 MS.gene93396:intron 30.0%
TTCATCATATGGAATCTAAC+TGG - chr2.4:26942545-26942564 None:intergenic 30.0%
! ATTTTCTTTACGTGACACTT+GGG - chr2.4:26943347-26943366 None:intergenic 30.0%
! CCATCTTTTCTTTCATCATA+TGG - chr2.4:26942556-26942575 None:intergenic 30.0%
! TATTTTCTTTACGTGACACT+TGG - chr2.4:26943348-26943367 None:intergenic 30.0%
!! AGAGAAGTTTGTTATTTGCT+TGG + chr2.4:26943747-26943766 MS.gene93396:intron 30.0%
!! TTAGCTTTTGTAATGTTTCC+TGG - chr2.4:26943214-26943233 None:intergenic 30.0%
AAAATGTTGTGTATCCACTG+TGG - chr2.4:26943557-26943576 None:intergenic 35.0%
AAGTACCACAATATCTATGG+AGG + chr2.4:26943504-26943523 MS.gene93396:CDS 35.0%
AGTACCACAATATCTATGGA+GGG + chr2.4:26943505-26943524 MS.gene93396:CDS 35.0%
AGTTAATGAGGCAGAACTAA+TGG + chr2.4:26943387-26943406 MS.gene93396:CDS 35.0%
ATATTGTGGTACTTCCTTGT+GGG - chr2.4:26943498-26943517 None:intergenic 35.0%
CAAATAACTAATGACGTCGT+TGG + chr2.4:26942479-26942498 MS.gene93396:CDS 35.0%
CAAATTTATGACTCCGACAA+AGG + chr2.4:26943885-26943904 MS.gene93396:intron 35.0%
CTGCAAAGTTTCTATCAAAG+AGG + chr2.4:26942595-26942614 MS.gene93396:CDS 35.0%
GAATCATCATTATTGCACCT+TGG - chr2.4:26943445-26943464 None:intergenic 35.0%
TGCTACAGAAATCATCTGTA+TGG - chr2.4:26943042-26943061 None:intergenic 35.0%
TTGATAGAAACTTTGCAGAC+AGG - chr2.4:26942593-26942612 None:intergenic 35.0%
TTTACCTGGTTCAAAAGTCT+TGG + chr2.4:26944153-26944172 MS.gene93396:intron 35.0%
TTTGCAAATCCTACTGATGA+TGG + chr2.4:26943067-26943086 MS.gene93396:CDS 35.0%
! AAGAAAAGATGGCCGAATTT+TGG + chr2.4:26942564-26942583 MS.gene93396:CDS 35.0%
! AAGGATATCCTTCTAAAGGA+AGG - chr2.4:26944134-26944153 None:intergenic 35.0%
! AGACTTTTGAACCAGGTAAA+AGG - chr2.4:26944153-26944172 None:intergenic 35.0%
! TAGAAGGATATCCTTTTACC+TGG + chr2.4:26944139-26944158 MS.gene93396:intron 35.0%
! TTTTCTTTACGTGACACTTG+GGG - chr2.4:26943346-26943365 None:intergenic 35.0%
!! AGGAAGTACCACAATATCTA+TGG + chr2.4:26943501-26943520 MS.gene93396:CDS 35.0%
!! TGCTATTATTGTGGTTTGCT+GGG + chr2.4:26943016-26943035 MS.gene93396:intron 35.0%
AAAAAGGGACGTGATTGAGT+GGG - chr2.4:26942757-26942776 None:intergenic 40.0%
AAATCGCCTATGATACACCA+AGG - chr2.4:26944009-26944028 None:intergenic 40.0%
AATCGCCTATGATACACCAA+GGG - chr2.4:26944008-26944027 None:intergenic 40.0%
ACAAAAGCTAACGTCTCTGA+TGG + chr2.4:26943223-26943242 MS.gene93396:CDS 40.0%
ACTTGGGGAAATAAAGTGGA+TGG - chr2.4:26943331-26943350 None:intergenic 40.0%
AGAAACAACAATGGCGGTTA+TGG + chr2.4:26943130-26943149 MS.gene93396:CDS 40.0%
ATACGTGTTCCATCATCAGT+AGG - chr2.4:26943079-26943098 None:intergenic 40.0%
ATAGCCCCCAAAATGAAGTT+AGG - chr2.4:26943920-26943939 None:intergenic 40.0%
ATGTCCGTAAACCTTTGATG+AGG + chr2.4:26942924-26942943 MS.gene93396:intron 40.0%
CAGGAATAAAGTAAGCCAAG+AGG - chr2.4:26944226-26944245 None:intergenic 40.0%
CATGGACTTGTACCCAAAAA+GGG - chr2.4:26942772-26942791 None:intergenic 40.0%
CCTTATCCGTGTCTATAAAC+CGG + chr2.4:26943680-26943699 MS.gene93396:intron 40.0%
CGAAGGTGAAGAAGATGAAT+TGG + chr2.4:26942436-26942455 MS.gene93396:CDS 40.0%
GATAGGAGAATGATCTGAAG+TGG - chr2.4:26944277-26944296 None:intergenic 40.0%
GATATTGTGGTACTTCCTTG+TGG - chr2.4:26943499-26943518 None:intergenic 40.0%
GGCTCTTTCTGCTATTATTG+TGG + chr2.4:26943007-26943026 MS.gene93396:intron 40.0%
GGGAAATAAAGTGGATGGAT+TGG - chr2.4:26943326-26943345 None:intergenic 40.0%
TAATGAGGCAGAACTAATGG+AGG + chr2.4:26943390-26943409 MS.gene93396:CDS 40.0%
TACACCCTCCATAGATATTG+TGG - chr2.4:26943512-26943531 None:intergenic 40.0%
TATGATACACCAAGGGTCAT+CGG - chr2.4:26944001-26944020 None:intergenic 40.0%
TATTGTGGTACTTCCTTGTG+GGG - chr2.4:26943497-26943516 None:intergenic 40.0%
TCATGGACTTGTACCCAAAA+AGG - chr2.4:26942773-26942792 None:intergenic 40.0%
TGACACTTGGGGAAATAAAG+TGG - chr2.4:26943335-26943354 None:intergenic 40.0%
TGATTGAGTGGGACAGATTT+GGG - chr2.4:26942746-26942765 None:intergenic 40.0%
TTAAGACTAGGAACTGCCTT+AGG - chr2.4:26943657-26943676 None:intergenic 40.0%
TTACGAGTGATGACAAACGA+GGG + chr2.4:26944040-26944059 MS.gene93396:intron 40.0%
TTGCAGAAGCCCTAGAATAA+GGG - chr2.4:26942711-26942730 None:intergenic 40.0%
TTGCATGACCTTCCTTTAGA+AGG + chr2.4:26944123-26944142 MS.gene93396:intron 40.0%
! ACTCAATCACGTCCCTTTTT+GGG + chr2.4:26942757-26942776 MS.gene93396:CDS 40.0%
! ATTTTATGTTGGAACTGCCG+AGG + chr2.4:26943621-26943640 MS.gene93396:intron 40.0%
! CTGCTATTATTGTGGTTTGC+TGG + chr2.4:26943015-26943034 MS.gene93396:intron 40.0%
! TATGGAGGGTGTACAACTTA+CGG + chr2.4:26943519-26943538 MS.gene93396:CDS 40.0%
!! AGACCGACTTGGCTTTATAA+TGG + chr2.4:26944072-26944091 MS.gene93396:intron 40.0%
!! ATGGAACGGGTTATCAAACA+AGG + chr2.4:26942662-26942681 MS.gene93396:CDS 40.0%
!! CGGATAAGGTCTTTAAGACT+AGG - chr2.4:26943669-26943688 None:intergenic 40.0%
!!! CATTTTTTATCGGCAGAGTC+TGG + chr2.4:26943571-26943590 MS.gene93396:intron 40.0%
AAAGCTAACGTCTCTGATGG+AGG + chr2.4:26943226-26943245 MS.gene93396:CDS 45.0%
AAATACTCATTTCGTCCGGC+AGG - chr2.4:26943605-26943624 None:intergenic 45.0%
AAGTAAGCCAAGAGGATGTG+TGG - chr2.4:26944218-26944237 None:intergenic 45.0%
AGTCTTTCTTCTACTGCACG+AGG - chr2.4:26944183-26944202 None:intergenic 45.0%
CAAAAAGGGACGTGATTGAG+TGG - chr2.4:26942758-26942777 None:intergenic 45.0%
CAACACTCGGATACGCATAA+AGG - chr2.4:26942900-26942919 None:intergenic 45.0%
CAAGTCCATGATGTTCCTGT+CGG + chr2.4:26942782-26942801 MS.gene93396:CDS 45.0%
CCGGTTTATAGACACGGATA+AGG - chr2.4:26943683-26943702 None:intergenic 45.0%
CTTACGAGTGATGACAAACG+AGG + chr2.4:26944039-26944058 MS.gene93396:intron 45.0%
CTTCTTCACCTTCGATGTAG+AGG - chr2.4:26942430-26942449 None:intergenic 45.0%
GGGTTATCAAACAAGGTCCT+TGG + chr2.4:26942669-26942688 MS.gene93396:CDS 45.0%
GTCTTTCTTCTACTGCACGA+GGG - chr2.4:26944182-26944201 None:intergenic 45.0%
GTGATTGAGTGGGACAGATT+TGG - chr2.4:26942747-26942766 None:intergenic 45.0%
GTTGCAGAAGCCCTAGAATA+AGG - chr2.4:26942712-26942731 None:intergenic 45.0%
TACAACCGACAGGAACATCA+TGG - chr2.4:26942790-26942809 None:intergenic 45.0%
TACGAGTGATGACAAACGAG+GGG + chr2.4:26944041-26944060 MS.gene93396:intron 45.0%
TACGGACATCGATCAACACT+CGG - chr2.4:26942913-26942932 None:intergenic 45.0%
TCTTTCTTCTACTGCACGAG+GGG - chr2.4:26944181-26944200 None:intergenic 45.0%
TGTCGCGAGGGTGAAAAAAT+TGG - chr2.4:26942643-26942662 None:intergenic 45.0%
! ACTGGCGCCTAACTTCATTT+TGG + chr2.4:26943910-26943929 MS.gene93396:intron 45.0%
! CACTCAATCACGTCCCTTTT+TGG + chr2.4:26942756-26942775 MS.gene93396:CDS 45.0%
! CTGGCGCCTAACTTCATTTT+GGG + chr2.4:26943911-26943930 MS.gene93396:intron 45.0%
! GATGACCCTTGGTGTATCAT+AGG + chr2.4:26944000-26944019 MS.gene93396:intron 45.0%
! GGTTCCAAGACTTTTGAACC+AGG - chr2.4:26944160-26944179 None:intergenic 45.0%
! TGGCGCCTAACTTCATTTTG+GGG + chr2.4:26943912-26943931 MS.gene93396:intron 45.0%
! TGTCGGTTGTATGTCTCTAG+CGG + chr2.4:26942799-26942818 MS.gene93396:intron 45.0%
!! ATTCTAGGGCTTCTGCAACA+AGG + chr2.4:26942713-26942732 MS.gene93396:CDS 45.0%
!! CAAGGTCCTTGGTCTTTTGA+TGG + chr2.4:26942680-26942699 MS.gene93396:CDS 45.0%
!! CTGATGATGGAACACGTATG+TGG + chr2.4:26943080-26943099 MS.gene93396:CDS 45.0%
!! GTGGTGGTCTTGCTGTTATT+TGG + chr2.4:26943808-26943827 MS.gene93396:intron 45.0%
!!! ATTTTTTCACCCTCGCGACA+TGG + chr2.4:26942643-26942662 MS.gene93396:CDS 45.0%
ACGAGTGATGACAAACGAGG+GGG + chr2.4:26944042-26944061 MS.gene93396:intron 50.0%
ATGACTCCGACAAAGGCAAC+TGG + chr2.4:26943892-26943911 MS.gene93396:intron 50.0%
ATGGCCGCACCCTTATTCTA+GGG + chr2.4:26942699-26942718 MS.gene93396:CDS 50.0%
CTAGCGGCAGGTAAACAACT+CGG + chr2.4:26942815-26942834 MS.gene93396:intron 50.0%
GAAGCCCTAGAATAAGGGTG+CGG - chr2.4:26942706-26942725 None:intergenic 50.0%
GAGCGTCTTATGTCCTGGTA+GGG + chr2.4:26942501-26942520 MS.gene93396:CDS 50.0%
GATGCAGTAAAGACCCCACA+AGG + chr2.4:26943481-26943500 MS.gene93396:CDS 50.0%
GCAGACAGGACGCCAAAATT+CGG - chr2.4:26942579-26942598 None:intergenic 50.0%
GCTAGAGACATACAACCGAC+AGG - chr2.4:26942800-26942819 None:intergenic 50.0%
GGTTCAGAAGCAAACCACAG+TGG + chr2.4:26943540-26943559 MS.gene93396:intron 50.0%
TGAGGCAGAACTAATGGAGG+AGG + chr2.4:26943393-26943412 MS.gene93396:CDS 50.0%
! ATGGAGCACCTCTACATCGA+AGG + chr2.4:26942419-26942438 MS.gene93396:CDS 50.0%
! GGCGCCTAACTTCATTTTGG+GGG + chr2.4:26943913-26943932 MS.gene93396:intron 50.0%
! GTTGATAGAGACGGTCGTAG+TGG + chr2.4:26943789-26943808 MS.gene93396:intron 50.0%
!! ATGCTCAGCGTCGACAATCT+TGG + chr2.4:26943947-26943966 MS.gene93396:intron 50.0%
!! ATGGCGGTTATGGCTCTAAG+TGG + chr2.4:26943140-26943159 MS.gene93396:CDS 50.0%
ATAACCCGTTCCATGTCGCG+AGG - chr2.4:26942656-26942675 None:intergenic 55.0%
ATGTTGGAACTGCCGAGGTC+TGG + chr2.4:26943626-26943645 MS.gene93396:intron 55.0%
CCTTAGGATGTCCCAGACCT+CGG - chr2.4:26943641-26943660 None:intergenic 55.0%
CTGCTATGTCCGATGACCCT+TGG + chr2.4:26943989-26944008 MS.gene93396:intron 55.0%
GAGCGTTCCACACATCCTCT+TGG + chr2.4:26944208-26944227 MS.gene93396:intron 55.0%
GAGTGGGACAGATTTGGGTG+TGG - chr2.4:26942741-26942760 None:intergenic 55.0%
GATAGAGACGGTCGTAGTGG+TGG + chr2.4:26943792-26943811 MS.gene93396:intron 55.0%
GATGGCCGCACCCTTATTCT+AGG + chr2.4:26942698-26942717 MS.gene93396:CDS 55.0%
GGGGATCTGAAAGACCGACT+TGG + chr2.4:26944061-26944080 MS.gene93396:intron 55.0%
GGTTGTATGTCTCTAGCGGC+AGG + chr2.4:26942803-26942822 MS.gene93396:intron 55.0%
GTGCGGCCATCAAAAGACCA+AGG - chr2.4:26942689-26942708 None:intergenic 55.0%
TAACCCGTTCCATGTCGCGA+GGG - chr2.4:26942655-26942674 None:intergenic 55.0%
TAGGCGCCAGTTGCCTTTGT+CGG - chr2.4:26943901-26943920 None:intergenic 55.0%
TCATTTCGTCCGGCAGGTCT+GGG - chr2.4:26943599-26943618 None:intergenic 55.0%
TGTTGGAACTGCCGAGGTCT+GGG + chr2.4:26943627-26943646 MS.gene93396:intron 55.0%
TTCACCCTCGCGACATGGAA+CGG + chr2.4:26942648-26942667 MS.gene93396:CDS 55.0%
! CGTTGGAGCGTCTTATGTCC+TGG + chr2.4:26942496-26942515 MS.gene93396:CDS 55.0%
! GGAGCGTCTTATGTCCTGGT+AGG + chr2.4:26942500-26942519 MS.gene93396:CDS 55.0%
! TTATGGGCGGCTTTGACTGC+TGG - chr2.4:26943258-26943277 None:intergenic 55.0%
!! CCTGGTAGGGCGTTTTCTCA+CGG + chr2.4:26942514-26942533 MS.gene93396:CDS 55.0%
AAGTGGCTGCGAGAGGACGA+AGG + chr2.4:26943157-26943176 MS.gene93396:CDS 60.0%
CCGTGAGAAAACGCCCTACC+AGG - chr2.4:26942517-26942536 None:intergenic 60.0%
CGAAGGTCCGGTTAGGTCTG+CGG + chr2.4:26943174-26943193 MS.gene93396:CDS 60.0%
CTCATTTCGTCCGGCAGGTC+TGG - chr2.4:26943600-26943619 None:intergenic 60.0%
GAAGGTCCGGTTAGGTCTGC+GGG + chr2.4:26943175-26943194 MS.gene93396:CDS 60.0%
GAGAGGACGAAGGTCCGGTT+AGG + chr2.4:26943167-26943186 MS.gene93396:CDS 60.0%
GCGGGTGCAACACAGAATCC+AGG + chr2.4:26943193-26943212 MS.gene93396:CDS 60.0%
GTTGCACCCGCAGACCTAAC+CGG - chr2.4:26943184-26943203 None:intergenic 60.0%
TCACCCTCGCGACATGGAAC+GGG + chr2.4:26942649-26942668 MS.gene93396:CDS 60.0%
! AGTCTGGTTCCCAGACCTGC+CGG + chr2.4:26943587-26943606 MS.gene93396:intron 60.0%
! CCGAGGTCTGGGACATCCTA+AGG + chr2.4:26943638-26943657 MS.gene93396:intron 60.0%
!! TGGCTCTAAGTGGCTGCGAG+AGG + chr2.4:26943150-26943169 MS.gene93396:CDS 60.0%
GCTGCGAGAGGACGAAGGTC+CGG + chr2.4:26943162-26943181 MS.gene93396:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 26942419 26944303 26942419 ID=MS.gene93396
chr2.4 mRNA 26942419 26944303 26942419 ID=MS.gene93396.t1;Parent=MS.gene93396
chr2.4 exon 26942419 26942810 26942419 ID=MS.gene93396.t1.exon1;Parent=MS.gene93396.t1
chr2.4 CDS 26942419 26942810 26942419 ID=cds.MS.gene93396.t1;Parent=MS.gene93396.t1
chr2.4 exon 26943060 26943540 26943060 ID=MS.gene93396.t1.exon2;Parent=MS.gene93396.t1
chr2.4 CDS 26943060 26943540 26943060 ID=cds.MS.gene93396.t1;Parent=MS.gene93396.t1
chr2.4 exon 26944274 26944303 26944274 ID=MS.gene93396.t1.exon3;Parent=MS.gene93396.t1
chr2.4 CDS 26944274 26944303 26944274 ID=cds.MS.gene93396.t1;Parent=MS.gene93396.t1
Gene Sequence

>MS.gene93396

ATGGAGCACCTCTACATCGAAGGTGAAGAAGATGAATTGGAAATTCTAGTTGATGAAAGACAAATAACTAATGACGTCGTTGGAGCGTCTTATGTCCTGGTAGGGCGTTTTCTCACGGATCGACCAGTTAGATTCCATATGATGAAAGAAAAGATGGCCGAATTTTGGCGTCCTGTCTGCAAAGTTTCTATCAAAGAGGTTGAACCTAACCTATATCTTTTCCAATTTTTTCACCCTCGCGACATGGAACGGGTTATCAAACAAGGTCCTTGGTCTTTTGATGGCCGCACCCTTATTCTAGGGCTTCTGCAACAAGGAACCACACCCAAATCTGTCCCACTCAATCACGTCCCTTTTTGGGTACAAGTCCATGATGTTCCTGTCGGTTGTATGTCTCTAGCGGCAGGTAAACAACTCGGTAACTTTATTGGTGAATTTATGGAATACGATGAGAAGAATAACACCAATTTTCTTGCTACCTTTATGCGTATCCGAGTGTTGATCGATGTCCGTAAACCTTTGATGAGGTTTAAGAAGATCAAGACAAAGATTGGTCTGCACACAGTTTGTTTCAAATATGAGCGATTAGGCTCTTTCTGCTATTATTGTGGTTTGCTGGGCCATACAGATGATTTCTGTAGCACTCTTTTTGCAAATCCTACTGATGATGGAACACGTATGTGGAGCTCTGATCTTCGCGCTCAAATAAAAAGAAACAACAATGGCGGTTATGGCTCTAAGTGGCTGCGAGAGGACGAAGGTCCGGTTAGGTCTGCGGGTGCAACACAGAATCCAGGAAACATTACAAAAGCTAACGTCTCTGATGGAGGAAATAACCAGCAGTCAAAGCCGCCCATAATTGTCAATAAATTAGGAGAAAAAATTTCTTTGGCTGAAGCTTTTACCAATCCATCCACTTTATTTCCCCAAGTGTCACGTAAAGAAAATAAGGAAGTTCATGAACATGTAGTTAATGAGGCAGAACTAATGGAGGAGGAATTAGATGACACATTAAAAAAGAGACCAAGGTGCAATAATGATGATTCAGAAGTCATAACTGATGATGCAGTAAAGACCCCACAAGGAAGTACCACAATATCTATGGAGGGTGTACAACTTACGGTTCAGAAGCAAACCACAGTGGATACACAACATTTTTTATCGGCAGAGTCTGGTTCCCAGACCTGCCGGACGAAATGAGTATTTTATGTTGGAACTGCCGAGGTCTGGGACATCCTAAGGCAGTTCCTAGTCTTAAAGACCTTATCCGTGTCTATAAACCGGATATTTTTTTCCTTATTGAAACTTTGTCGCATTCTAATAAAATAAGAGAAGTTTGTTATTTGCTTGGTTATGATTCTTATTTTACTGTTGATAGAGACGGTCGTAGTGGTGGTCTTGCTGTTATTTGGAAGTCCTCTATTCAATGTAATATCATCAATTATTCATCTAATTTCATTAATTTGCAAATTTATGACTCCGACAAAGGCAACTGGCGCCTAACTTCATTTTGGGGGCTATTCTAATAATGCTCAGCGTCGACAATCTTGGAATCTTCTTCGAGATCTTGCTGCTATGTCCGATGACCCTTGGTGTATCATAGGCGATTTTAATGATCTTCTTACGAGTGATGACAAACGAGGGGGATCTGAAAGACCGACTTGGCTTTATAATGGTTTTCGTTCAGCAGTCAATGATTGTAACTTGCATGACCTTCCTTTAGAAGGATATCCTTTTACCTGGTTCAAAAGTCTTGGAACCCCTCGTGCAGTAGAAGAAAGACTTGATAGAGCGTTCCACACATCCTCTTGGCTTACTTTATTCCTGAATGCAAGATTAATTAATCTTGTTGCAGCCACTTCAGATCATTCTCCTATCCTTCTAA
Protein sequence

>MS.gene93396.t1

MEHLYIEGEEDELEILVDERQITNDVVGASYVLVGRFLTDRPVRFHMMKEKMAEFWRPVCKVSIKEVEPNLYLFQFFHPRDMERVIKQGPWSFDGRTLILGLLQQGTTPKSVPLNHVPFWVQVHDVPVGCITLFANPTDDGTRMWSSDLRAQIKRNNNGGYGSKWLREDEGPVRSAGATQNPGNITKANVSDGGNNQQSKPPIIVNKLGEKISLAEAFTNPSTLFPQVSRKENKEVHEHVVNEAELMEEELDDTLKKRPRCNNDDSEVITDDAVKTPQGSTTISMEGVQLTPLQIILLSF