Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02896.t1 | XP_024630779.1 | 58.2 | 359 | 142 | 4 | 1 | 355 | 1 | 355 | 7.10E-108 | 401.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02896.t1 | A0A396JIW9 | 54.2 | 380 | 165 | 4 | 1 | 378 | 1 | 373 | 4.0e-105 | 391.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02896.t1 | MTR_0010s0370 | 76.796 | 181 | 41 | 1 | 1 | 181 | 1 | 180 | 7.22e-97 | 293 |
MS.gene02896.t1 | MTR_0010s0350 | 76.796 | 181 | 41 | 1 | 1 | 181 | 1 | 180 | 7.22e-97 | 293 |
MS.gene02896.t1 | MTR_1g051330 | 68.085 | 188 | 60 | 0 | 369 | 556 | 276 | 463 | 2.30e-88 | 288 |
MS.gene02896.t1 | MTR_1g051330 | 33.696 | 184 | 101 | 5 | 226 | 399 | 8 | 180 | 8.23e-15 | 78.2 |
MS.gene02896.t1 | MTR_1g036720 | 75.893 | 112 | 26 | 1 | 1 | 112 | 1 | 111 | 1.62e-55 | 182 |
MS.gene02896.t1 | MTR_6g046587 | 75.221 | 113 | 28 | 0 | 369 | 481 | 171 | 283 | 4.39e-49 | 172 |
MS.gene02896.t1 | MTR_1g036710 | 48.744 | 199 | 59 | 4 | 133 | 327 | 1 | 160 | 3.08e-47 | 167 |
MS.gene02896.t1 | MTR_8g463110 | 38.743 | 191 | 116 | 1 | 372 | 561 | 124 | 314 | 2.65e-37 | 147 |
MS.gene02896.t1 | MTR_1g100687 | 44.118 | 170 | 92 | 2 | 370 | 536 | 58 | 227 | 4.07e-36 | 135 |
MS.gene02896.t1 | MTR_0042s0130 | 40.000 | 170 | 97 | 2 | 369 | 535 | 160 | 327 | 9.47e-32 | 125 |
MS.gene02896.t1 | MTR_4g020630 | 38.378 | 185 | 101 | 3 | 371 | 552 | 67 | 241 | 1.16e-30 | 125 |
MS.gene02896.t1 | MTR_3g044860 | 35.106 | 188 | 95 | 2 | 370 | 556 | 14 | 175 | 1.20e-28 | 116 |
MS.gene02896.t1 | MTR_6g033215 | 31.638 | 177 | 118 | 2 | 25 | 200 | 120 | 294 | 6.22e-26 | 108 |
MS.gene02896.t1 | MTR_6g034215 | 33.333 | 195 | 107 | 3 | 370 | 561 | 144 | 318 | 7.50e-26 | 108 |
MS.gene02896.t1 | MTR_7g089990 | 47.273 | 110 | 56 | 1 | 103 | 210 | 84 | 193 | 4.30e-24 | 100 |
MS.gene02896.t1 | MTR_2g055450 | 34.682 | 173 | 97 | 2 | 369 | 540 | 177 | 334 | 2.85e-23 | 102 |
MS.gene02896.t1 | MTR_6g009010 | 38.168 | 131 | 72 | 2 | 381 | 502 | 132 | 262 | 9.83e-22 | 95.5 |
MS.gene02896.t1 | MTR_8g470880 | 44.762 | 105 | 57 | 1 | 372 | 475 | 419 | 523 | 3.88e-20 | 94.4 |
MS.gene02896.t1 | MTR_0114s0080 | 45.977 | 87 | 47 | 0 | 372 | 458 | 47 | 133 | 1.77e-19 | 85.5 |
MS.gene02896.t1 | MTR_6g034715 | 42.391 | 92 | 53 | 0 | 369 | 460 | 49 | 140 | 4.14e-19 | 85.5 |
MS.gene02896.t1 | MTR_3g053920 | 30.481 | 187 | 108 | 5 | 4 | 188 | 8 | 174 | 2.65e-18 | 85.9 |
MS.gene02896.t1 | MTR_2g061500 | 36.508 | 126 | 77 | 2 | 3 | 128 | 7 | 129 | 2.79e-17 | 79.0 |
MS.gene02896.t1 | MTR_2g018005 | 47.674 | 86 | 45 | 0 | 370 | 455 | 144 | 229 | 6.29e-17 | 80.5 |
MS.gene02896.t1 | MTR_4g103530 | 38.889 | 90 | 54 | 1 | 57 | 146 | 5 | 93 | 1.42e-15 | 75.9 |
MS.gene02896.t1 | MTR_4g122570 | 31.792 | 173 | 100 | 4 | 329 | 501 | 289 | 443 | 3.31e-15 | 79.0 |
MS.gene02896.t1 | MTR_3g024240 | 36.066 | 122 | 75 | 2 | 82 | 201 | 55 | 175 | 1.88e-13 | 69.3 |
MS.gene02896.t1 | MTR_2g063055 | 41.558 | 77 | 45 | 0 | 480 | 556 | 63 | 139 | 1.75e-12 | 66.6 |
MS.gene02896.t1 | MTR_0112s0060 | 50.877 | 57 | 28 | 0 | 402 | 458 | 55 | 111 | 1.31e-11 | 62.4 |
MS.gene02896.t1 | MTR_7g106180 | 28.767 | 146 | 96 | 3 | 34 | 176 | 26 | 166 | 5.66e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02896.t1 | AT2G41590 | 25.822 | 213 | 155 | 1 | 4 | 216 | 9 | 218 | 1.75e-18 | 87.8 |
MS.gene02896.t1 | AT5G18636 | 24.883 | 213 | 157 | 1 | 4 | 216 | 9 | 218 | 2.22e-18 | 87.4 |
MS.gene02896.t1 | AT5G25200 | 24.883 | 213 | 157 | 1 | 4 | 216 | 9 | 218 | 2.70e-18 | 87.4 |
MS.gene02896.t1 | AT2G02103 | 24.413 | 213 | 158 | 1 | 4 | 216 | 9 | 218 | 6.62e-18 | 86.7 |
MS.gene02896.t1 | AT3G57587 | 27.568 | 185 | 131 | 2 | 32 | 216 | 37 | 218 | 1.26e-17 | 85.1 |
MS.gene02896.t1 | AT2G17920 | 27.568 | 185 | 131 | 2 | 32 | 216 | 37 | 218 | 1.50e-17 | 84.0 |
MS.gene02896.t1 | AT2G13450 | 25.108 | 231 | 165 | 3 | 4 | 229 | 9 | 236 | 5.12e-17 | 83.6 |
MS.gene02896.t1 | AT3G31430 | 22.705 | 207 | 155 | 1 | 3 | 209 | 103 | 304 | 4.20e-16 | 80.1 |
MS.gene02896.t1 | AT5G36228 | 23.364 | 214 | 161 | 2 | 3 | 216 | 8 | 218 | 2.57e-15 | 78.2 |
MS.gene02896.t1 | AT3G47920 | 30.282 | 142 | 96 | 2 | 75 | 216 | 9 | 147 | 1.69e-14 | 75.1 |
MS.gene02896.t1 | AT4G02000 | 26.471 | 136 | 97 | 2 | 81 | 216 | 6 | 138 | 1.14e-12 | 69.7 |
MS.gene02896.t1 | AT5G36225 | 29.545 | 88 | 62 | 0 | 122 | 209 | 17 | 104 | 1.81e-11 | 64.7 |
MS.gene02896.t1 | AT2G13500 | 23.276 | 232 | 154 | 5 | 109 | 335 | 111 | 323 | 2.54e-11 | 65.9 |
Find 139 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAATGAGGCTCCTAAAATT+TGG | 0.176623 | 2.4:+61826348 | None:intergenic |
TTTACAAAGAATTCTTAAAA+AGG | 0.220249 | 2.4:-61828160 | MS.gene02896:CDS |
TTGAACTGGTGAAGACAAAT+TGG | 0.233822 | 2.4:-61826452 | MS.gene02896:CDS |
CAGATGACGGTACAAGATTA+TGG | 0.256998 | 2.4:-61827735 | MS.gene02896:CDS |
ATAACAGGTTGGCAAGATTT+TGG | 0.262061 | 2.4:+61826250 | None:intergenic |
GATTGGAGGGTGACCTGATT+TGG | 0.263816 | 2.4:+61828075 | None:intergenic |
GATCCAAACCTCAGAATTAT+AGG | 0.266966 | 2.4:-61828321 | MS.gene02896:CDS |
TGTTCCTCATTATTCTGATT+TGG | 0.305559 | 2.4:+61827496 | None:intergenic |
AATCTAGATGATGGAAGAAT+TGG | 0.327088 | 2.4:+61828181 | None:intergenic |
TCCGTTCCTATATGAGAATC+AGG | 0.331248 | 2.4:-61827927 | MS.gene02896:CDS |
CTGTCAGAGTTGACACGGTT+TGG | 0.333790 | 2.4:+61827322 | None:intergenic |
GATGTCTTTCCCTACTTTCT+CGG | 0.334257 | 2.4:+61828005 | None:intergenic |
GGTTGTGAGGGTAGGATATC+AGG | 0.340127 | 2.4:+61828348 | None:intergenic |
AATAATCACCTCCTGGTTCT+AGG | 0.340632 | 2.4:-61828120 | MS.gene02896:CDS |
TGTCAGAGTTGACACGGTTT+GGG | 0.344768 | 2.4:+61827323 | None:intergenic |
TGGAGATGATTGAAACATTC+TGG | 0.372027 | 2.4:-61828257 | MS.gene02896:CDS |
TAAAATTTGGAGAAGCATTA+CGG | 0.375956 | 2.4:+61826361 | None:intergenic |
AGCTTTGTTGTAATATTTGC+TGG | 0.376494 | 2.4:+61826417 | None:intergenic |
CGACCTATAATTCTGAGGTT+TGG | 0.381104 | 2.4:+61828318 | None:intergenic |
CTCTTTGACCTCCCCATCCT+TGG | 0.381387 | 2.4:-61826711 | MS.gene02896:CDS |
GTGGATTAAGTTGCAGGAGG+AGG | 0.389557 | 2.4:+61826541 | None:intergenic |
AAGGGAGTGGATTAAGTTGC+AGG | 0.391500 | 2.4:+61826535 | None:intergenic |
TTCACCAGTTCAATAAAATC+AGG | 0.392534 | 2.4:+61826462 | None:intergenic |
TGGATTAAGTTGCAGGAGGA+GGG | 0.392834 | 2.4:+61826542 | None:intergenic |
ATTGGAGGGTGACCTGATTT+GGG | 0.393785 | 2.4:+61828076 | None:intergenic |
ATTTGGTTCTGCAGAATTGA+TGG | 0.397958 | 2.4:+61827513 | None:intergenic |
AGAAAACTGTGTCCCAAATC+AGG | 0.414627 | 2.4:-61828088 | MS.gene02896:CDS |
TAGCTCGAAAATCTTCAATC+TGG | 0.414881 | 2.4:+61826313 | None:intergenic |
TCATGGACTTGGATCCAAAA+AGG | 0.419483 | 2.4:+61828048 | None:intergenic |
ATGACACTTGTTTCTCCACT+TGG | 0.423280 | 2.4:+61827853 | None:intergenic |
AGATGACGGTACAAGATTAT+GGG | 0.428671 | 2.4:-61827734 | MS.gene02896:CDS |
ATAAGCCATGGCGGACGATC+AGG | 0.431079 | 2.4:+61826768 | None:intergenic |
AGAATCGGTAACTGCTGATT+TGG | 0.434182 | 2.4:+61827588 | None:intergenic |
TTGGATGTTATAGTGCTGTT+TGG | 0.434977 | 2.4:+61827607 | None:intergenic |
CTGCGGTGCGGTTGCCTCCA+AGG | 0.435663 | 2.4:+61826516 | None:intergenic |
TTGGCGCGACCAATGTTTGT+AGG | 0.448009 | 2.4:+61826580 | None:intergenic |
AGGGGAGTATGATCAGATAT+TGG | 0.451120 | 2.4:+61826561 | None:intergenic |
TGCGGTTGCCTCCAAGGGAG+TGG | 0.452228 | 2.4:+61826522 | None:intergenic |
ATTCTGAGGTTTGGATCAGC+TGG | 0.453039 | 2.4:+61828327 | None:intergenic |
TTCTTTGTAAATCTAGATGA+TGG | 0.453210 | 2.4:+61828172 | None:intergenic |
TCCTTGGCTACCAATTTACT+TGG | 0.456188 | 2.4:-61826695 | MS.gene02896:CDS |
GGAAGAATTGGAATGAGAAC+AGG | 0.456946 | 2.4:+61828193 | None:intergenic |
ATTGGCTAAGGCTGCAGAAT+CGG | 0.461697 | 2.4:+61827573 | None:intergenic |
AAAGACATCGCAAACTTCAT+TGG | 0.474476 | 2.4:-61827991 | MS.gene02896:CDS |
AGTAAATTGGTAGCCAAGGA+TGG | 0.474860 | 2.4:+61826698 | None:intergenic |
GGATTAAGTTGCAGGAGGAG+GGG | 0.475006 | 2.4:+61826543 | None:intergenic |
GGTGCATATTTAGAAGTTGA+GGG | 0.479047 | 2.4:+61826271 | None:intergenic |
GGGAGCGTTGTTTATTAATG+AGG | 0.481879 | 2.4:+61826334 | None:intergenic |
ATGCGGATTACGTAACAGAT+TGG | 0.482427 | 2.4:+61827555 | None:intergenic |
AACTTAATCCACTCCCTTGG+AGG | 0.488060 | 2.4:-61826530 | MS.gene02896:CDS |
CACGACCCTGATTCTCATAT+AGG | 0.491556 | 2.4:+61827921 | None:intergenic |
TGAACTGGTGAAGACAAATT+GGG | 0.493159 | 2.4:-61826451 | MS.gene02896:CDS |
TCCGCCAACTCTTGCTGACA+TGG | 0.494369 | 2.4:-61827374 | MS.gene02896:CDS |
GAATAATGAGGAACAAATGT+TGG | 0.499590 | 2.4:-61827488 | MS.gene02896:CDS |
TACCAAAGCTCTATCTAGTC+GGG | 0.500045 | 2.4:+61826638 | None:intergenic |
AGCCCGACTAGATAGAGCTT+TGG | 0.504246 | 2.4:-61826640 | MS.gene02896:CDS |
TTTACTTGGTTCAAAAGCAT+CGG | 0.506823 | 2.4:-61826681 | MS.gene02896:CDS |
AAACAGCGGTCCAACGGCGG+TGG | 0.509435 | 2.4:-61827691 | MS.gene02896:CDS |
CATTCGTACTCATATGATGA+TGG | 0.513196 | 2.4:-61828277 | MS.gene02896:CDS |
TCCATGTCAGCAAGAGTTGG+CGG | 0.516583 | 2.4:+61827373 | None:intergenic |
CTGTAGGGAGGTCATGGACT+TGG | 0.516657 | 2.4:+61828037 | None:intergenic |
CATCATCATATGAGTACGAA+TGG | 0.516941 | 2.4:+61828278 | None:intergenic |
TGCAACTTAATCCACTCCCT+TGG | 0.517817 | 2.4:-61826533 | MS.gene02896:CDS |
CCTCATCACTCAGTGAAAGT+TGG | 0.519166 | 2.4:+61828391 | None:intergenic |
CAAGTCCATGACCTCCCTAC+AGG | 0.519416 | 2.4:-61828036 | MS.gene02896:CDS |
TGCGGTGCGGTTGCCTCCAA+GGG | 0.520715 | 2.4:+61826517 | None:intergenic |
CGTCCGCCATGGCTTATTCG+AGG | 0.530201 | 2.4:-61826762 | MS.gene02896:CDS |
CTTTGATAATAATCACCTCC+TGG | 0.530227 | 2.4:-61828127 | MS.gene02896:CDS |
TTTGGATCAGCTGGTTGTGA+GGG | 0.531416 | 2.4:+61828336 | None:intergenic |
GCTACATGTCCGAGAAAGTA+GGG | 0.531670 | 2.4:-61828014 | MS.gene02896:CDS |
CTGGAAGAACTCCTAGAACC+AGG | 0.533838 | 2.4:+61828109 | None:intergenic |
AGCTCGAAAATCTTCAATCT+GGG | 0.536284 | 2.4:+61826314 | None:intergenic |
TGTCCGCACTGTCAAAATAG+AGG | 0.536512 | 2.4:-61828229 | MS.gene02896:CDS |
ACCAAGTAAATTGGTAGCCA+AGG | 0.537727 | 2.4:+61826694 | None:intergenic |
TATTGTATTACGCCGACGAT+GGG | 0.538961 | 2.4:+61826134 | None:intergenic |
TGTAGCCTGTAGGGAGGTCA+TGG | 0.541274 | 2.4:+61828031 | None:intergenic |
GTAAATTGGTAGCCAAGGAT+GGG | 0.542017 | 2.4:+61826699 | None:intergenic |
TGGTGCATATTTAGAAGTTG+AGG | 0.545913 | 2.4:+61826270 | None:intergenic |
AATTGGAATGAGAACAGGCC+TGG | 0.550478 | 2.4:+61828198 | None:intergenic |
ATCATCATATGAGTACGAAT+GGG | 0.555618 | 2.4:+61828279 | None:intergenic |
ATACCAAAGCTCTATCTAGT+CGG | 0.559641 | 2.4:+61826637 | None:intergenic |
TAATGAGGAACAAATGTTGG+AGG | 0.564135 | 2.4:-61827485 | MS.gene02896:CDS |
TCTCGGACATGTAGCCTGTA+GGG | 0.569990 | 2.4:+61828022 | None:intergenic |
GATCAGCTGGTTGTGAGGGT+AGG | 0.571360 | 2.4:+61828340 | None:intergenic |
TTATTGTATTACGCCGACGA+TGG | 0.571553 | 2.4:+61826133 | None:intergenic |
GCTGAGAAACAGCGGTCCAA+CGG | 0.571798 | 2.4:-61827697 | MS.gene02896:CDS |
CACCAGCTGATAAGCGCGGA+GGG | 0.572120 | 2.4:-61826791 | MS.gene02896:intron |
CATTGTTAAATTTAAAACTG+CGG | 0.576441 | 2.4:+61826499 | None:intergenic |
GAGGGCCTGATCGTCCGCCA+TGG | 0.579389 | 2.4:-61826773 | MS.gene02896:CDS |
GGCTACATGTCCGAGAAAGT+AGG | 0.579452 | 2.4:-61828015 | MS.gene02896:CDS |
ACACGGTTTGGGCCTGCATG+TGG | 0.581497 | 2.4:+61827334 | None:intergenic |
GTTTGGATCAGCTGGTTGTG+AGG | 0.585732 | 2.4:+61828335 | None:intergenic |
GTGAGGGTAGGATATCAGGT+TGG | 0.586519 | 2.4:+61828352 | None:intergenic |
TGATGATGTCCTACAAACAT+TGG | 0.586626 | 2.4:-61826589 | MS.gene02896:CDS |
AGAACCAAATCAGAATAATG+AGG | 0.588534 | 2.4:-61827500 | MS.gene02896:CDS |
ATTACGTAACAGATTGGCTA+AGG | 0.591591 | 2.4:+61827561 | None:intergenic |
GATGACGGTACAAGATTATG+GGG | 0.592257 | 2.4:-61827733 | MS.gene02896:CDS |
CAGTGAAAGTTGGTTGAGAG+AGG | 0.592679 | 2.4:+61828401 | None:intergenic |
TCAATATTGTATTGATGACA+TGG | 0.593049 | 2.4:-61826394 | MS.gene02896:CDS |
CAAGGATGGGGAGGTCAAAG+AGG | 0.600496 | 2.4:+61826712 | None:intergenic |
CCTCAGCTTCTGCCCATCGT+CGG | 0.600556 | 2.4:-61826146 | MS.gene02896:intron |
TTCTCGGACATGTAGCCTGT+AGG | 0.601122 | 2.4:+61828021 | None:intergenic |
AAATTCAAATATGAGCGTCT+CGG | 0.601305 | 2.4:-61827829 | MS.gene02896:CDS |
GCGGTGGATTTCAGAGAGCA+AGG | 0.601539 | 2.4:-61827675 | MS.gene02896:CDS |
TTTGGTTGAACTGTAACTGA+TGG | 0.603254 | 2.4:+61827625 | None:intergenic |
TCTCTGAAATCCACCGCCGT+TGG | 0.604265 | 2.4:+61827681 | None:intergenic |
TGGAAACCTCGAATAAGCCA+TGG | 0.608838 | 2.4:+61826756 | None:intergenic |
TACTGCTGTCAGAGTTGACA+CGG | 0.614025 | 2.4:+61827317 | None:intergenic |
AAAATAGAGGAAATTGAACC+AGG | 0.614337 | 2.4:-61828216 | MS.gene02896:CDS |
TACTCAGTGGATTCAGATGA+CGG | 0.614899 | 2.4:-61827748 | MS.gene02896:CDS |
CCCTGATTCTCATATAGGAA+CGG | 0.616304 | 2.4:+61827926 | None:intergenic |
TATTCGAGGTTTCCAAAATG+CGG | 0.617789 | 2.4:-61826748 | MS.gene02896:CDS |
TTTGAAGGGCGCATTAAATG+CGG | 0.625170 | 2.4:+61827538 | None:intergenic |
TTTGTTGTAATATTTGCTGG+AGG | 0.630227 | 2.4:+61826420 | None:intergenic |
TAAATTGGTAGCCAAGGATG+GGG | 0.630275 | 2.4:+61826700 | None:intergenic |
CCGTTCCTATATGAGAATCA+GGG | 0.633295 | 2.4:-61827926 | MS.gene02896:CDS |
AATGTTGGAGGAGAATAATG+AGG | 0.638869 | 2.4:-61827473 | MS.gene02896:CDS |
ATTGGTAGCCAAGGATGGGG+AGG | 0.643859 | 2.4:+61826703 | None:intergenic |
ACTTTCACTGAGTGATGAGG+AGG | 0.650008 | 2.4:-61828388 | MS.gene02896:CDS |
CCAACTTTCACTGAGTGATG+AGG | 0.651193 | 2.4:-61828391 | MS.gene02896:CDS |
GGATGGGGAGGTCAAAGAGG+TGG | 0.652521 | 2.4:+61826715 | None:intergenic |
GGAAACGACCTATAATTCTG+AGG | 0.656985 | 2.4:+61828313 | None:intergenic |
GAGAAACAGCGGTCCAACGG+CGG | 0.657085 | 2.4:-61827694 | MS.gene02896:CDS |
CTGTGAAAAGCTGTACTCAG+TGG | 0.659184 | 2.4:-61827761 | MS.gene02896:CDS |
GTATTGATGACATGGTAGCA+TGG | 0.659506 | 2.4:-61826386 | MS.gene02896:CDS |
TACGAATGGGACGATTTGTG+AGG | 0.662775 | 2.4:+61828292 | None:intergenic |
CGGACATGTAGCCTGTAGGG+AGG | 0.677254 | 2.4:+61828025 | None:intergenic |
GGAGTGGATTAAGTTGCAGG+AGG | 0.678080 | 2.4:+61826538 | None:intergenic |
TCACCAGCTGATAAGCGCGG+AGG | 0.678419 | 2.4:-61826792 | MS.gene02896:intron |
GTTCAATAACAGTTCAGCGG+CGG | 0.680284 | 2.4:-61827653 | MS.gene02896:CDS |
AATTTCGTGCTGAGAAACAG+CGG | 0.685009 | 2.4:-61827705 | MS.gene02896:CDS |
AAGGTTCAATAACAGTTCAG+CGG | 0.690669 | 2.4:-61827656 | MS.gene02896:CDS |
TTATCACCAGCTGATAAGCG+CGG | 0.696591 | 2.4:-61826795 | MS.gene02896:intron |
GAGCTTTGGTATCCTCCTCG+TGG | 0.710863 | 2.4:-61826626 | MS.gene02896:CDS |
TGATTATTATCAAAGTACCA+AGG | 0.720168 | 2.4:+61828135 | None:intergenic |
TTAAATTTAAAACTGCGGTG+CGG | 0.725289 | 2.4:+61826504 | None:intergenic |
ATGACGGTACAAGATTATGG+GGG | 0.743730 | 2.4:-61827732 | MS.gene02896:CDS |
GAAGAACTCCTAGAACCAGG+AGG | 0.750816 | 2.4:+61828112 | None:intergenic |
AAACCTCGAATAAGCCATGG+CGG | 0.769057 | 2.4:+61826759 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTGTTGTAAAAACAAAA+CGG | - | chr2.4:61827099-61827118 | MS.gene02896:intron | 15.0% |
!! | TTACAAAGAATTCTTAAAAA+GGG | - | chr2.4:61826387-61826406 | MS.gene02896:CDS | 15.0% |
!! | TTTACAAAGAATTCTTAAAA+AGG | - | chr2.4:61826386-61826405 | MS.gene02896:CDS | 15.0% |
!!! | GTTTTAAATTTAACAATGAA+TGG | - | chr2.4:61828052-61828071 | MS.gene02896:CDS | 15.0% |
!!! | TTTTGTTTTTACAACAATTA+TGG | + | chr2.4:61827099-61827118 | None:intergenic | 15.0% |
!! | AAGAAATGAATATCATATCT+TGG | - | chr2.4:61827323-61827342 | MS.gene02896:CDS | 20.0% |
!! | TCAATTAAGATTACAATATC+CGG | + | chr2.4:61827415-61827434 | None:intergenic | 20.0% |
!! | TTAATTGAAACTTTAGTTGA+TGG | - | chr2.4:61827427-61827446 | MS.gene02896:CDS | 20.0% |
!!! | CATTGTTAAATTTAAAACTG+CGG | + | chr2.4:61828050-61828069 | None:intergenic | 20.0% |
!!! | GTCATCTGATAATTTTTTAT+CGG | - | chr2.4:61827274-61827293 | MS.gene02896:intron | 20.0% |
! | AGTCAAGTTAATGAAATTCT+GGG | + | chr2.4:61827581-61827600 | None:intergenic | 25.0% |
! | GATATGATATTCATTTCTTC+CGG | + | chr2.4:61827322-61827341 | None:intergenic | 25.0% |
! | TAGTCAAGTTAATGAAATTC+TGG | + | chr2.4:61827582-61827601 | None:intergenic | 25.0% |
! | TCTGAATTATGTTACAAGAT+TGG | - | chr2.4:61827460-61827479 | MS.gene02896:CDS | 25.0% |
! | TTCTTTGTAAATCTAGATGA+TGG | + | chr2.4:61826377-61826396 | None:intergenic | 25.0% |
!! | TCAATATTGTATTGATGACA+TGG | - | chr2.4:61828152-61828171 | MS.gene02896:CDS | 25.0% |
!! | TGATTATTATCAAAGTACCA+AGG | + | chr2.4:61826414-61826433 | None:intergenic | 25.0% |
!! | TTTCATTAACTTGACTATTC+AGG | - | chr2.4:61827585-61827604 | MS.gene02896:CDS | 25.0% |
!!! | TAAAATTTGGAGAAGCATTA+CGG | + | chr2.4:61828188-61828207 | None:intergenic | 25.0% |
AAAAAGATAAAGAGACCAAG+TGG | - | chr2.4:61826678-61826697 | MS.gene02896:CDS | 30.0% | |
AAAATAGAGGAAATTGAACC+AGG | - | chr2.4:61826330-61826349 | MS.gene02896:CDS | 30.0% | |
AAATTCAAATATGAGCGTCT+CGG | - | chr2.4:61826717-61826736 | MS.gene02896:CDS | 30.0% | |
AGAACCAAATCAGAATAATG+AGG | - | chr2.4:61827046-61827065 | MS.gene02896:intron | 30.0% | |
AGCTTTCTTCTTGTAATAAC+AGG | + | chr2.4:61828314-61828333 | None:intergenic | 30.0% | |
ATCATCATATGAGTACGAAT+GGG | + | chr2.4:61826270-61826289 | None:intergenic | 30.0% | |
GAATAATGAGGAACAAATGT+TGG | - | chr2.4:61827058-61827077 | MS.gene02896:intron | 30.0% | |
GATCATTTGATTGATTGCTA+AGG | + | chr2.4:61827699-61827718 | None:intergenic | 30.0% | |
TATTACAAGAAGAAAGCTAC+TGG | - | chr2.4:61828316-61828335 | MS.gene02896:CDS | 30.0% | |
TGTAAAAACAAAACGGTCAA+GGG | - | chr2.4:61827106-61827125 | MS.gene02896:intron | 30.0% | |
TGTTCCTCATTATTCTGATT+TGG | + | chr2.4:61827053-61827072 | None:intergenic | 30.0% | |
TTAATGAGGCTCCTAAAATT+TGG | + | chr2.4:61828201-61828220 | None:intergenic | 30.0% | |
TTCACCAGTTCAATAAAATC+AGG | + | chr2.4:61828087-61828106 | None:intergenic | 30.0% | |
TTCTTCTTGTAATAACAGGT+TGG | + | chr2.4:61828310-61828329 | None:intergenic | 30.0% | |
TTGTAAAAACAAAACGGTCA+AGG | - | chr2.4:61827105-61827124 | MS.gene02896:intron | 30.0% | |
! | GTAATGCTTCTCCAAATTTT+AGG | - | chr2.4:61828187-61828206 | MS.gene02896:CDS | 30.0% |
! | TGAACCTGATTTTATTGAAC+TGG | - | chr2.4:61828080-61828099 | MS.gene02896:CDS | 30.0% |
! | TGCTTTTGAACCAAGTAAAT+TGG | + | chr2.4:61827864-61827883 | None:intergenic | 30.0% |
! | TTAAATTTAAAACTGCGGTG+CGG | + | chr2.4:61828045-61828064 | None:intergenic | 30.0% |
! | TTTACTTGGTTCAAAAGCAT+CGG | - | chr2.4:61827865-61827884 | MS.gene02896:CDS | 30.0% |
! | TTTGTTGTAATATTTGCTGG+AGG | + | chr2.4:61828129-61828148 | None:intergenic | 30.0% |
!! | AATCTAGATGATGGAAGAAT+TGG | + | chr2.4:61826368-61826387 | None:intergenic | 30.0% |
!! | AGCTTTGTTGTAATATTTGC+TGG | + | chr2.4:61828132-61828151 | None:intergenic | 30.0% |
!! | CAGAATTGATGGTTTTTGAA+GGG | + | chr2.4:61827025-61827044 | None:intergenic | 30.0% |
!!! | GGAAACTTTTGCTATTTTTG+TGG | - | chr2.4:61826738-61826757 | MS.gene02896:CDS | 30.0% |
AAAGACATCGCAAACTTCAT+TGG | - | chr2.4:61826555-61826574 | MS.gene02896:CDS | 35.0% | |
AAGGTTCAATAACAGTTCAG+CGG | - | chr2.4:61826890-61826909 | MS.gene02896:intron | 35.0% | |
AATGTTGGAGGAGAATAATG+AGG | - | chr2.4:61827073-61827092 | MS.gene02896:intron | 35.0% | |
ACTATTCAGGACCCTATAAA+CGG | - | chr2.4:61827598-61827617 | MS.gene02896:CDS | 35.0% | |
AGCTCGAAAATCTTCAATCT+GGG | + | chr2.4:61828235-61828254 | None:intergenic | 35.0% | |
ATACCAAAGCTCTATCTAGT+CGG | + | chr2.4:61827912-61827931 | None:intergenic | 35.0% | |
CATCATCATATGAGTACGAA+TGG | + | chr2.4:61826271-61826290 | None:intergenic | 35.0% | |
CATTCGTACTCATATGATGA+TGG | - | chr2.4:61826269-61826288 | MS.gene02896:CDS | 35.0% | |
GAATTCTTAAAAAGGGTCCT+TGG | - | chr2.4:61826394-61826413 | MS.gene02896:CDS | 35.0% | |
GATCCAAACCTCAGAATTAT+AGG | - | chr2.4:61826225-61826244 | MS.gene02896:intron | 35.0% | |
GCAATCAATCAAATGATCCA+TGG | - | chr2.4:61827701-61827720 | MS.gene02896:CDS | 35.0% | |
GGTGCATATTTAGAAGTTGA+GGG | + | chr2.4:61828278-61828297 | None:intergenic | 35.0% | |
GTAAAAACAAAACGGTCAAG+GGG | - | chr2.4:61827107-61827126 | MS.gene02896:intron | 35.0% | |
TAATGAGGAACAAATGTTGG+AGG | - | chr2.4:61827061-61827080 | MS.gene02896:intron | 35.0% | |
TAGCTCGAAAATCTTCAATC+TGG | + | chr2.4:61828236-61828255 | None:intergenic | 35.0% | |
TATTCGAGGTTTCCAAAATG+CGG | - | chr2.4:61827798-61827817 | MS.gene02896:CDS | 35.0% | |
TGAACTGGTGAAGACAAATT+GGG | - | chr2.4:61828095-61828114 | MS.gene02896:CDS | 35.0% | |
TGGAGATGATTGAAACATTC+TGG | - | chr2.4:61826289-61826308 | MS.gene02896:CDS | 35.0% | |
TGGTGCATATTTAGAAGTTG+AGG | + | chr2.4:61828279-61828298 | None:intergenic | 35.0% | |
TTGAACTGGTGAAGACAAAT+TGG | - | chr2.4:61828094-61828113 | MS.gene02896:CDS | 35.0% | |
TTGATTGATTGCTAAGGTAG+CGG | + | chr2.4:61827693-61827712 | None:intergenic | 35.0% | |
TTTGGTTGAACTGTAACTGA+TGG | + | chr2.4:61826924-61826943 | None:intergenic | 35.0% | |
! | AGATGACGGTACAAGATTAT+GGG | - | chr2.4:61826812-61826831 | MS.gene02896:intron | 35.0% |
! | ATTACGTAACAGATTGGCTA+AGG | + | chr2.4:61826988-61827007 | None:intergenic | 35.0% |
! | CATTTTTCTGTTGACCGAAT+CGG | - | chr2.4:61827493-61827512 | MS.gene02896:CDS | 35.0% |
! | CTTTGATAATAATCACCTCC+TGG | - | chr2.4:61826419-61826438 | MS.gene02896:CDS | 35.0% |
! | TGATGATGTCCTACAAACAT+TGG | - | chr2.4:61827957-61827976 | MS.gene02896:CDS | 35.0% |
! | TTGGATGTTATAGTGCTGTT+TGG | + | chr2.4:61826942-61826961 | None:intergenic | 35.0% |
!! | AAAGTCTTTTGGCTATCTGA+CGG | - | chr2.4:61828351-61828370 | MS.gene02896:CDS | 35.0% |
!! | ATAACAGGTTGGCAAGATTT+TGG | + | chr2.4:61828299-61828318 | None:intergenic | 35.0% |
!! | ATCTTTTTCATGCGCTTTAG+AGG | + | chr2.4:61826666-61826685 | None:intergenic | 35.0% |
!! | ATTTGGTTCTGCAGAATTGA+TGG | + | chr2.4:61827036-61827055 | None:intergenic | 35.0% |
!! | GCAGAATTGATGGTTTTTGA+AGG | + | chr2.4:61827026-61827045 | None:intergenic | 35.0% |
!!! | TGCTATTTTTGTGGTATGCT+GGG | - | chr2.4:61826747-61826766 | MS.gene02896:CDS | 35.0% |
!!! | TTGCTATTTTTGTGGTATGC+TGG | - | chr2.4:61826746-61826765 | MS.gene02896:CDS | 35.0% |
!!! | TTTCCTCTATTTTGACAGTG+CGG | + | chr2.4:61826323-61826342 | None:intergenic | 35.0% |
AAAAAATTTGCGCCACATGC+AGG | - | chr2.4:61827200-61827219 | MS.gene02896:intron | 40.0% | |
AATGATCCATGGTGCATCAT+CGG | - | chr2.4:61827712-61827731 | MS.gene02896:CDS | 40.0% | |
AATTTCGTGCTGAGAAACAG+CGG | - | chr2.4:61826841-61826860 | MS.gene02896:intron | 40.0% | |
AGAAAACTGTGTCCCAAATC+AGG | - | chr2.4:61826458-61826477 | MS.gene02896:CDS | 40.0% | |
AGATGACTTAGAGATGTCCA+TGG | + | chr2.4:61827261-61827280 | None:intergenic | 40.0% | |
AGTCTCCAGTTACCGTTTAT+AGG | + | chr2.4:61827613-61827632 | None:intergenic | 40.0% | |
ATCATATCTTGGAACTGTCG+AGG | - | chr2.4:61827334-61827353 | MS.gene02896:CDS | 40.0% | |
ATGACGGTACAAGATTATGG+GGG | - | chr2.4:61826814-61826833 | MS.gene02896:intron | 40.0% | |
CCAAAAAGGAACAGATTGGA+GGG | + | chr2.4:61826487-61826506 | None:intergenic | 40.0% | |
CCCTGATTCTCATATAGGAA+CGG | + | chr2.4:61826623-61826642 | None:intergenic | 40.0% | |
CCGTTCCTATATGAGAATCA+GGG | - | chr2.4:61826620-61826639 | MS.gene02896:CDS | 40.0% | |
CCTGATACGTGTCTATAAAC+CGG | - | chr2.4:61827393-61827412 | MS.gene02896:CDS | 40.0% | |
GATGACTTAGAGATGTCCAT+GGG | + | chr2.4:61827260-61827279 | None:intergenic | 40.0% | |
GATGTCTTTCCCTACTTTCT+CGG | + | chr2.4:61826544-61826563 | None:intergenic | 40.0% | |
GCTTATCAGCTGGTGATAAA+TGG | + | chr2.4:61827750-61827769 | None:intergenic | 40.0% | |
GGAAACGACCTATAATTCTG+AGG | + | chr2.4:61826236-61826255 | None:intergenic | 40.0% | |
GGAAGAATTGGAATGAGAAC+AGG | + | chr2.4:61826356-61826375 | None:intergenic | 40.0% | |
GGATCCAAAAAGGAACAGAT+TGG | + | chr2.4:61826491-61826510 | None:intergenic | 40.0% | |
GTCTCCAGTTACCGTTTATA+GGG | + | chr2.4:61827612-61827631 | None:intergenic | 40.0% | |
TACAAGAAGAAAGCTACTGG+CGG | - | chr2.4:61828319-61828338 | MS.gene02896:CDS | 40.0% | |
TACCAAAGCTCTATCTAGTC+GGG | + | chr2.4:61827911-61827930 | None:intergenic | 40.0% | |
TCATGGACTTGGATCCAAAA+AGG | + | chr2.4:61826501-61826520 | None:intergenic | 40.0% | |
TCCAAAAAGGAACAGATTGG+AGG | + | chr2.4:61826488-61826507 | None:intergenic | 40.0% | |
TCCGTTCCTATATGAGAATC+AGG | - | chr2.4:61826619-61826638 | MS.gene02896:CDS | 40.0% | |
TCCTTGGCTACCAATTTACT+TGG | - | chr2.4:61827851-61827870 | MS.gene02896:CDS | 40.0% | |
TGATATTCATTTCTTCCGGC+AGG | + | chr2.4:61827318-61827337 | None:intergenic | 40.0% | |
! | AATAATCACCTCCTGGTTCT+AGG | - | chr2.4:61826426-61826445 | MS.gene02896:CDS | 40.0% |
! | ACCAAGTAAATTGGTAGCCA+AGG | + | chr2.4:61827855-61827874 | None:intergenic | 40.0% |
! | AGAATCGGTAACTGCTGATT+TGG | + | chr2.4:61826961-61826980 | None:intergenic | 40.0% |
! | AGAGAAAATGTTTTGCCACG+AGG | + | chr2.4:61827938-61827957 | None:intergenic | 40.0% |
! | AGGGGAGTATGATCAGATAT+TGG | + | chr2.4:61827988-61828007 | None:intergenic | 40.0% |
! | AGTAAATTGGTAGCCAAGGA+TGG | + | chr2.4:61827851-61827870 | None:intergenic | 40.0% |
! | ATGACACTTGTTTCTCCACT+TGG | + | chr2.4:61826696-61826715 | None:intergenic | 40.0% |
! | ATGCGGATTACGTAACAGAT+TGG | + | chr2.4:61826994-61827013 | None:intergenic | 40.0% |
! | CAGATGACGGTACAAGATTA+TGG | - | chr2.4:61826811-61826830 | MS.gene02896:intron | 40.0% |
! | GATGACGGTACAAGATTATG+GGG | - | chr2.4:61826813-61826832 | MS.gene02896:intron | 40.0% |
! | GTAAATTGGTAGCCAAGGAT+GGG | + | chr2.4:61827850-61827869 | None:intergenic | 40.0% |
! | GTATTGATGACATGGTAGCA+TGG | - | chr2.4:61828160-61828179 | MS.gene02896:CDS | 40.0% |
! | TAAATTGGTAGCCAAGGATG+GGG | + | chr2.4:61827849-61827868 | None:intergenic | 40.0% |
! | TACTCAGTGGATTCAGATGA+CGG | - | chr2.4:61826798-61826817 | MS.gene02896:intron | 40.0% |
! | TTTGAAGGGCGCATTAAATG+CGG | + | chr2.4:61827011-61827030 | None:intergenic | 40.0% |
! | TTTTCCATGTCAGCAAGAGT+TGG | + | chr2.4:61827179-61827198 | None:intergenic | 40.0% |
!! | CGACCTATAATTCTGAGGTT+TGG | + | chr2.4:61826231-61826250 | None:intergenic | 40.0% |
!! | GGGAGCGTTGTTTATTAATG+AGG | + | chr2.4:61828215-61828234 | None:intergenic | 40.0% |
!! | TGATTTGGGACACAGTTTTC+TGG | + | chr2.4:61826459-61826478 | None:intergenic | 40.0% |
!!! | AATTTTTTATCGGCAGAGCC+TGG | - | chr2.4:61827284-61827303 | MS.gene02896:intron | 40.0% |
AAACCTCGAATAAGCCATGG+CGG | + | chr2.4:61827790-61827809 | None:intergenic | 45.0% | |
AACTTAATCCACTCCCTTGG+AGG | - | chr2.4:61828016-61828035 | MS.gene02896:CDS | 45.0% | |
AATTGGAATGAGAACAGGCC+TGG | + | chr2.4:61826351-61826370 | None:intergenic | 45.0% | |
ACTTTCACTGAGTGATGAGG+AGG | - | chr2.4:61826158-61826177 | MS.gene02896:intron | 45.0% | |
AGGACCCTATAAACGGTAAC+TGG | - | chr2.4:61827605-61827624 | MS.gene02896:CDS | 45.0% | |
ATTGGAGGGTGACCTGATTT+GGG | + | chr2.4:61826473-61826492 | None:intergenic | 45.0% | |
ATTGGCTAAGGCTGCAGAAT+CGG | + | chr2.4:61826976-61826995 | None:intergenic | 45.0% | |
CACGACCCTGATTCTCATAT+AGG | + | chr2.4:61826628-61826647 | None:intergenic | 45.0% | |
CCAACTTTCACTGAGTGATG+AGG | - | chr2.4:61826155-61826174 | MS.gene02896:intron | 45.0% | |
CCGGTTTATAGACACGTATC+AGG | + | chr2.4:61827396-61827415 | None:intergenic | 45.0% | |
CCTCATCACTCAGTGAAAGT+TGG | + | chr2.4:61826158-61826177 | None:intergenic | 45.0% | |
CGTATCAGGTCTTTAATCGC+AGG | + | chr2.4:61827382-61827401 | None:intergenic | 45.0% | |
CTGTGAAAAGCTGTACTCAG+TGG | - | chr2.4:61826785-61826804 | MS.gene02896:CDS | 45.0% | |
GCTACATGTCCGAGAAAGTA+GGG | - | chr2.4:61826532-61826551 | MS.gene02896:CDS | 45.0% | |
GTTCAATAACAGTTCAGCGG+CGG | - | chr2.4:61826893-61826912 | MS.gene02896:intron | 45.0% | |
TACGAATGGGACGATTTGTG+AGG | + | chr2.4:61826257-61826276 | None:intergenic | 45.0% | |
TACTGCTGTCAGAGTTGACA+CGG | + | chr2.4:61827232-61827251 | None:intergenic | 45.0% | |
TCTACGGTTACTCAGACTCA+GGG | - | chr2.4:61827641-61827660 | MS.gene02896:CDS | 45.0% | |
TGAGTCTGAGTAACCGTAGA+AGG | + | chr2.4:61827641-61827660 | None:intergenic | 45.0% | |
TGCAACTTAATCCACTCCCT+TGG | - | chr2.4:61828013-61828032 | MS.gene02896:CDS | 45.0% | |
TGGAAACCTCGAATAAGCCA+TGG | + | chr2.4:61827793-61827812 | None:intergenic | 45.0% | |
TGGAGACTTACTGCCTTCTA+CGG | - | chr2.4:61827625-61827644 | MS.gene02896:CDS | 45.0% | |
TGTCAGAGTTGACACGGTTT+GGG | + | chr2.4:61827226-61827245 | None:intergenic | 45.0% | |
TGTCCGCACTGTCAAAATAG+AGG | - | chr2.4:61826317-61826336 | MS.gene02896:CDS | 45.0% | |
TTATCACCAGCTGATAAGCG+CGG | - | chr2.4:61827751-61827770 | MS.gene02896:CDS | 45.0% | |
TTCTACGGTTACTCAGACTC+AGG | - | chr2.4:61827640-61827659 | MS.gene02896:CDS | 45.0% | |
TTTGGATCAGCTGGTTGTGA+GGG | + | chr2.4:61826213-61826232 | None:intergenic | 45.0% | |
! | CAGTGAAAGTTGGTTGAGAG+AGG | + | chr2.4:61826148-61826167 | None:intergenic | 45.0% |
! | CCCTCCAATCTGTTCCTTTT+TGG | - | chr2.4:61826484-61826503 | MS.gene02896:CDS | 45.0% |
! | CTAGTCGGGCTTCTTTTGAA+TGG | + | chr2.4:61827897-61827916 | None:intergenic | 45.0% |
! | GAAAATGTTTTGCCACGAGG+AGG | + | chr2.4:61827935-61827954 | None:intergenic | 45.0% |
! | GGCAACGTTCGAAAGTCTTT+TGG | - | chr2.4:61828340-61828359 | MS.gene02896:CDS | 45.0% |
! | GGCAGTCTTTTACCGCATTT+TGG | + | chr2.4:61827813-61827832 | None:intergenic | 45.0% |
! | TGGATTAAGTTGCAGGAGGA+GGG | + | chr2.4:61828007-61828026 | None:intergenic | 45.0% |
!! | AAGGGAGTGGATTAAGTTGC+AGG | + | chr2.4:61828014-61828033 | None:intergenic | 45.0% |
!! | ATTCTGAGGTTTGGATCAGC+TGG | + | chr2.4:61826222-61826241 | None:intergenic | 45.0% |
!!! | CTATTTTGACAGTGCGGACA+GGG | + | chr2.4:61826317-61826336 | None:intergenic | 45.0% |
!!! | TCTATTTTGACAGTGCGGAC+AGG | + | chr2.4:61826318-61826337 | None:intergenic | 45.0% |
AAGTCTCCGATGATGCACCA+TGG | + | chr2.4:61827721-61827740 | None:intergenic | 50.0% | |
AATCGGAAGAAGTGGAGGTC+TGG | - | chr2.4:61827510-61827529 | MS.gene02896:CDS | 50.0% | |
AGCCCGACTAGATAGAGCTT+TGG | - | chr2.4:61827906-61827925 | MS.gene02896:CDS | 50.0% | |
ATCTTGGAACTGTCGAGGCT+TGG | - | chr2.4:61827339-61827358 | MS.gene02896:CDS | 50.0% | |
CTGGAAGAACTCCTAGAACC+AGG | + | chr2.4:61826440-61826459 | None:intergenic | 50.0% | |
CTGTCAGAGTTGACACGGTT+TGG | + | chr2.4:61827227-61827246 | None:intergenic | 50.0% | |
GAAGAACTCCTAGAACCAGG+AGG | + | chr2.4:61826437-61826456 | None:intergenic | 50.0% | |
GACCTCCACTTCTTCCGATT+CGG | + | chr2.4:61827510-61827529 | None:intergenic | 50.0% | |
GATTGGAGGGTGACCTGATT+TGG | + | chr2.4:61826474-61826493 | None:intergenic | 50.0% | |
GGAATAGTTCAACAGCGAGC+AGG | + | chr2.4:61827560-61827579 | None:intergenic | 50.0% | |
GGCTACATGTCCGAGAAAGT+AGG | - | chr2.4:61826531-61826550 | MS.gene02896:CDS | 50.0% | |
GGTTGTGAGGGTAGGATATC+AGG | + | chr2.4:61826201-61826220 | None:intergenic | 50.0% | |
GTGAGGGTAGGATATCAGGT+TGG | + | chr2.4:61826197-61826216 | None:intergenic | 50.0% | |
GTGGAGGTCTGGCTATTCTA+TGG | - | chr2.4:61827521-61827540 | MS.gene02896:CDS | 50.0% | |
GTTGACCGAATCGGAAGAAG+TGG | - | chr2.4:61827502-61827521 | MS.gene02896:CDS | 50.0% | |
GTTTGGATCAGCTGGTTGTG+AGG | + | chr2.4:61826214-61826233 | None:intergenic | 50.0% | |
TCCATGTCAGCAAGAGTTGG+CGG | + | chr2.4:61827176-61827195 | None:intergenic | 50.0% | |
TCTCGGACATGTAGCCTGTA+GGG | + | chr2.4:61826527-61826546 | None:intergenic | 50.0% | |
TCTTGGAACTGTCGAGGCTT+GGG | - | chr2.4:61827340-61827359 | MS.gene02896:CDS | 50.0% | |
TGACAGCAGTAGTACTCCCA+TGG | - | chr2.4:61827241-61827260 | MS.gene02896:intron | 50.0% | |
TTCTCGGACATGTAGCCTGT+AGG | + | chr2.4:61826528-61826547 | None:intergenic | 50.0% | |
TTGGCGCGACCAATGTTTGT+AGG | + | chr2.4:61827969-61827988 | None:intergenic | 50.0% | |
! | GGATTAAGTTGCAGGAGGAG+GGG | + | chr2.4:61828006-61828025 | None:intergenic | 50.0% |
! | GTGGATTAAGTTGCAGGAGG+AGG | + | chr2.4:61828008-61828027 | None:intergenic | 50.0% |
!! | GATTGCTAAGGTAGCGGAGA+AGG | + | chr2.4:61827687-61827706 | None:intergenic | 50.0% |
!! | GGAGTGGATTAAGTTGCAGG+AGG | + | chr2.4:61828011-61828030 | None:intergenic | 50.0% |
CAAGGATGGGGAGGTCAAAG+AGG | + | chr2.4:61827837-61827856 | None:intergenic | 55.0% | |
CAAGTCCATGACCTCCCTAC+AGG | - | chr2.4:61826510-61826529 | MS.gene02896:CDS | 55.0% | |
CTCTTTGACCTCCCCATCCT+TGG | - | chr2.4:61827835-61827854 | MS.gene02896:CDS | 55.0% | |
CTGTAGGGAGGTCATGGACT+TGG | + | chr2.4:61826512-61826531 | None:intergenic | 55.0% | |
GACCGAATCGGAAGAAGTGG+AGG | - | chr2.4:61827505-61827524 | MS.gene02896:CDS | 55.0% | |
GATCAGCTGGTTGTGAGGGT+AGG | + | chr2.4:61826209-61826228 | None:intergenic | 55.0% | |
GCTGAGAAACAGCGGTCCAA+CGG | - | chr2.4:61826849-61826868 | MS.gene02896:intron | 55.0% | |
GGAGAAGGTCCCAAGATTCG+CGG | + | chr2.4:61827672-61827691 | None:intergenic | 55.0% | |
GGTTACTCAGACTCAGGGAG+AGG | - | chr2.4:61827646-61827665 | MS.gene02896:CDS | 55.0% | |
TCATTTCTTCCGGCAGGCCT+GGG | + | chr2.4:61827312-61827331 | None:intergenic | 55.0% | |
TCCGCCAACTCTTGCTGACA+TGG | - | chr2.4:61827172-61827191 | MS.gene02896:intron | 55.0% | |
TCGAGGCTTGGGAAACGTCA+AGG | - | chr2.4:61827351-61827370 | MS.gene02896:CDS | 55.0% | |
TGTAGCCTGTAGGGAGGTCA+TGG | + | chr2.4:61826518-61826537 | None:intergenic | 55.0% | |
TTCATTTCTTCCGGCAGGCC+TGG | + | chr2.4:61827313-61827332 | None:intergenic | 55.0% | |
! | ATTGGTAGCCAAGGATGGGG+AGG | + | chr2.4:61827846-61827865 | None:intergenic | 55.0% |
! | GAGCTTTGGTATCCTCCTCG+TGG | - | chr2.4:61827920-61827939 | MS.gene02896:CDS | 55.0% |
! | GCGGTGGATTTCAGAGAGCA+AGG | - | chr2.4:61826871-61826890 | MS.gene02896:intron | 55.0% |
!! | ATAAGCCATGGCGGACGATC+AGG | + | chr2.4:61827781-61827800 | None:intergenic | 55.0% |
!! | TCTCTGAAATCCACCGCCGT+TGG | + | chr2.4:61826868-61826887 | None:intergenic | 55.0% |
AGGGAGAGGCCGCGAATCTT+GGG | - | chr2.4:61827660-61827679 | MS.gene02896:CDS | 60.0% | |
CACCAGCTGATAAGCGCGGA+GGG | - | chr2.4:61827755-61827774 | MS.gene02896:CDS | 60.0% | |
CCTCAGCTTCTGCCCATCGT+CGG | - | chr2.4:61828400-61828419 | MS.gene02896:CDS | 60.0% | |
CGGACATGTAGCCTGTAGGG+AGG | + | chr2.4:61826524-61826543 | None:intergenic | 60.0% | |
CGTCCGCCATGGCTTATTCG+AGG | - | chr2.4:61827784-61827803 | MS.gene02896:CDS | 60.0% | |
GAGAAACAGCGGTCCAACGG+CGG | - | chr2.4:61826852-61826871 | MS.gene02896:intron | 60.0% | |
GGATGGGGAGGTCAAAGAGG+TGG | + | chr2.4:61827834-61827853 | None:intergenic | 60.0% | |
TCACCAGCTGATAAGCGCGG+AGG | - | chr2.4:61827754-61827773 | MS.gene02896:CDS | 60.0% | |
! | ACACGGTTTGGGCCTGCATG+TGG | + | chr2.4:61827215-61827234 | None:intergenic | 60.0% |
AAACAGCGGTCCAACGGCGG+TGG | - | chr2.4:61826855-61826874 | MS.gene02896:intron | 65.0% | |
ATCGGCAGAGCCTGGTTCCC+AGG | - | chr2.4:61827292-61827311 | MS.gene02896:intron | 65.0% | |
CAGGGAGAGGCCGCGAATCT+TGG | - | chr2.4:61827659-61827678 | MS.gene02896:CDS | 65.0% | |
CCGACGATGGGCAGAAGCTG+AGG | + | chr2.4:61828403-61828422 | None:intergenic | 65.0% | |
TGCGGTGCGGTTGCCTCCAA+GGG | + | chr2.4:61828032-61828051 | None:intergenic | 65.0% | |
TGCGGTTGCCTCCAAGGGAG+TGG | + | chr2.4:61828027-61828046 | None:intergenic | 65.0% | |
AGCCTGGTTCCCAGGCCTGC+CGG | - | chr2.4:61827300-61827319 | MS.gene02896:intron | 70.0% | |
CTGCGGTGCGGTTGCCTCCA+AGG | + | chr2.4:61828033-61828052 | None:intergenic | 70.0% | |
GAGGGCCTGATCGTCCGCCA+TGG | - | chr2.4:61827773-61827792 | MS.gene02896:CDS | 70.0% | |
GGCCCTCCGCGCTTATCAGC+TGG | + | chr2.4:61827760-61827779 | None:intergenic | 70.0% | |
TTCCGGCAGGCCTGGGAACC+AGG | + | chr2.4:61827305-61827324 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 61826141 | 61828427 | 61826141 | ID=MS.gene02896 |
chr2.4 | mRNA | 61826141 | 61828427 | 61826141 | ID=MS.gene02896.t1;Parent=MS.gene02896 |
chr2.4 | exon | 61827317 | 61828427 | 61827317 | ID=MS.gene02896.t1.exon1;Parent=MS.gene02896.t1 |
chr2.4 | CDS | 61827317 | 61828427 | 61827317 | ID=cds.MS.gene02896.t1;Parent=MS.gene02896.t1 |
chr2.4 | exon | 61826255 | 61826807 | 61826255 | ID=MS.gene02896.t1.exon2;Parent=MS.gene02896.t1 |
chr2.4 | CDS | 61826255 | 61826807 | 61826255 | ID=cds.MS.gene02896.t1;Parent=MS.gene02896.t1 |
chr2.4 | exon | 61826141 | 61826162 | 61826141 | ID=MS.gene02896.t1.exon3;Parent=MS.gene02896.t1 |
chr2.4 | CDS | 61826141 | 61826162 | 61826141 | ID=cds.MS.gene02896.t1;Parent=MS.gene02896.t1 |
Gene Sequence |
Protein sequence |