Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57019.t1 | PNX72859.1 | 42.3 | 366 | 174 | 6 | 4 | 338 | 124 | 483 | 5.80E-71 | 278.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57019.t1 | A0A392MN10 | 57.5 | 219 | 93 | 0 | 4 | 222 | 25 | 243 | 4.0e-74 | 288.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57019.t1 | MTR_3g053920 | 40.828 | 169 | 85 | 1 | 4 | 172 | 5 | 158 | 9.70e-45 | 155 |
| MS.gene57019.t1 | MTR_2g061500 | 42.857 | 126 | 72 | 0 | 3 | 128 | 4 | 129 | 6.43e-37 | 130 |
| MS.gene57019.t1 | MTR_6g033215 | 35.393 | 178 | 113 | 1 | 23 | 198 | 117 | 294 | 9.98e-37 | 134 |
| MS.gene57019.t1 | MTR_0010s0370 | 30.114 | 176 | 117 | 3 | 6 | 176 | 3 | 177 | 3.87e-28 | 108 |
| MS.gene57019.t1 | MTR_0010s0350 | 30.114 | 176 | 117 | 3 | 6 | 176 | 3 | 177 | 3.87e-28 | 108 |
| MS.gene57019.t1 | MTR_4g103530 | 40.385 | 104 | 58 | 1 | 58 | 157 | 5 | 108 | 3.16e-25 | 101 |
| MS.gene57019.t1 | MTR_7g011710 | 42.056 | 107 | 53 | 1 | 58 | 155 | 5 | 111 | 1.55e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57019.t1 | AT5G36228 | 24.123 | 228 | 165 | 4 | 7 | 229 | 9 | 233 | 4.76e-15 | 75.9 |
| MS.gene57019.t1 | AT3G31430 | 26.712 | 146 | 99 | 4 | 71 | 214 | 172 | 311 | 1.04e-11 | 65.9 |
Find 116 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTCACCGTTGCTGATTT+TGG | 0.144998 | 5.1:-55030858 | None:intergenic |
| TGCTTTCTGTGTGGTGTAAT+TGG | 0.185435 | 5.1:+55031128 | MS.gene57019:CDS |
| GAGGGGCCTTGGTGCCTACT+TGG | 0.245154 | 5.1:+55030941 | MS.gene57019:CDS |
| ATCATGTGCAAAATAATAAT+AGG | 0.246689 | 5.1:+55031423 | MS.gene57019:CDS |
| TGTTCCATTATTTCATTATT+AGG | 0.251483 | 5.1:-55031557 | None:intergenic |
| TAATGTGGCTGCATCAAATA+TGG | 0.290697 | 5.1:+55031355 | MS.gene57019:CDS |
| ATTAATGCCTCCTTGATTAC+TGG | 0.297912 | 5.1:-55031336 | None:intergenic |
| GTGGGGACCACGGAGGAATT+AGG | 0.314319 | 5.1:-55031506 | None:intergenic |
| GAAAAGGTTGGGAGGGGCCT+TGG | 0.328952 | 5.1:+55030930 | MS.gene57019:CDS |
| CAAATATCTGCACTCGCGTC+TGG | 0.346808 | 5.1:+55030668 | MS.gene57019:CDS |
| GCTGCCTAATAATGAAATAA+TGG | 0.365576 | 5.1:+55031553 | MS.gene57019:CDS |
| GCGAATTGAAGAAAAGAAAA+AGG | 0.372571 | 5.1:+55031603 | MS.gene57019:CDS |
| GGCGATTTCACCATCACTTC+CGG | 0.376216 | 5.1:-55031281 | None:intergenic |
| CTGTCAGAATACGACCTATC+AGG | 0.376421 | 5.1:-55030629 | None:intergenic |
| ACCTTCATTTCAGCCGCATT+AGG | 0.390787 | 5.1:-55030594 | None:intergenic |
| TCATGTGCAAAATAATAATA+GGG | 0.398555 | 5.1:+55031424 | MS.gene57019:CDS |
| CGGTGAATAAACTTGACATA+TGG | 0.402820 | 5.1:+55030871 | MS.gene57019:CDS |
| AACAAATTCCTCTTCCAGTT+GGG | 0.408543 | 5.1:+55030741 | MS.gene57019:CDS |
| CTTCATCCAGACGAACATTC+AGG | 0.414395 | 5.1:-55031058 | None:intergenic |
| AGGGGCCTTGGTGCCTACTT+GGG | 0.416292 | 5.1:+55030942 | MS.gene57019:CDS |
| CAGATAAATCTTGTAAGAAA+AGG | 0.423130 | 5.1:+55031156 | MS.gene57019:CDS |
| CCGGAGACGGCTGCCGGAGG+GGG | 0.426980 | 5.1:+55031302 | MS.gene57019:CDS |
| CATCGATTTGGTGACCCAAC+TGG | 0.429232 | 5.1:-55030755 | None:intergenic |
| GTCCCCACCTTGCTCTCAAA+TGG | 0.431163 | 5.1:+55031521 | MS.gene57019:CDS |
| TCTTACAAGATTTATCTGTA+TGG | 0.436472 | 5.1:-55031151 | None:intergenic |
| TAATAATGAAATAATGGAAC+AGG | 0.437956 | 5.1:+55031559 | MS.gene57019:CDS |
| TTCGTCTGGATGAAGGTGCT+TGG | 0.447032 | 5.1:+55031066 | MS.gene57019:CDS |
| TGTTGTCTTCATGCAGGAAA+AGG | 0.448165 | 5.1:+55030914 | MS.gene57019:CDS |
| GCAGATCTTCCTTTGAAGAA+AGG | 0.451541 | 5.1:+55031035 | MS.gene57019:CDS |
| GCACATGATGAACATCGATT+TGG | 0.452982 | 5.1:-55030767 | None:intergenic |
| AAGATGGTGAAAGCTTCTAC+TGG | 0.457464 | 5.1:+55031648 | MS.gene57019:CDS |
| GTGAAGAAGGTATGACCCTT+AGG | 0.460997 | 5.1:+55030565 | MS.gene57019:CDS |
| GTGCTTGGCCACTGCCTGAT+AGG | 0.461981 | 5.1:+55030615 | MS.gene57019:CDS |
| TCAGTTCAAGTACGAGAAGT+TGG | 0.463739 | 5.1:+55031097 | MS.gene57019:CDS |
| ATTACATCCAACCCTTTGCC+TGG | 0.478519 | 5.1:-55030705 | None:intergenic |
| CAGTTCAAGTACGAGAAGTT+GGG | 0.482079 | 5.1:+55031098 | MS.gene57019:CDS |
| TCTTCATGCAGGAAAAGGTT+GGG | 0.484106 | 5.1:+55030919 | MS.gene57019:CDS |
| CCGCATTAGGATCCATCCTA+AGG | 0.485320 | 5.1:-55030581 | None:intergenic |
| CAGAGTTCGGCCAGTAATCA+AGG | 0.485639 | 5.1:+55031326 | MS.gene57019:CDS |
| GAAGGAAAATTGATTAAAGA+TGG | 0.488553 | 5.1:+55031632 | MS.gene57019:CDS |
| AAACAAATTCCTCTTCCAGT+TGG | 0.489839 | 5.1:+55030740 | MS.gene57019:CDS |
| GTCTTCATGCAGGAAAAGGT+TGG | 0.499110 | 5.1:+55030918 | MS.gene57019:CDS |
| AAATCGCCGGAGACGGCTGC+CGG | 0.500533 | 5.1:+55031296 | MS.gene57019:CDS |
| TCGTCTGGATGAAGGTGCTT+GGG | 0.503662 | 5.1:+55031067 | MS.gene57019:CDS |
| GTTCATCATGTGCTGTCTAA+AGG | 0.508566 | 5.1:+55030777 | MS.gene57019:CDS |
| GACATATGGGTGCAGGTCCA+TGG | 0.509287 | 5.1:+55030885 | MS.gene57019:CDS |
| CGCCGGAGACGGCTGCCGGA+GGG | 0.509989 | 5.1:+55031300 | MS.gene57019:CDS |
| ATGTTCAGATTTGTAGCCAT+CGG | 0.510582 | 5.1:-55030525 | None:intergenic |
| GAAAGGCCTGAATGTTCGTC+TGG | 0.511106 | 5.1:+55031052 | MS.gene57019:CDS |
| ACATTCAGGCCTTTCTTCAA+AGG | 0.513931 | 5.1:-55031044 | None:intergenic |
| GGCTGCATCAAATATGGAAA+CGG | 0.514831 | 5.1:+55031361 | MS.gene57019:CDS |
| CCTTCCTGTTGTCTTCATGC+AGG | 0.514906 | 5.1:+55030908 | MS.gene57019:CDS |
| GCCGGAGACGGCTGCCGGAG+GGG | 0.516896 | 5.1:+55031301 | MS.gene57019:CDS |
| AAACAAGTGGAGTCTTGATC+CGG | 0.519573 | 5.1:+55031262 | MS.gene57019:intron |
| GGTGAATAAACTTGACATAT+GGG | 0.519962 | 5.1:+55030872 | MS.gene57019:CDS |
| TCGCCGGAGACGGCTGCCGG+AGG | 0.520688 | 5.1:+55031299 | MS.gene57019:CDS |
| TTTGGTGACCCAACTGGAAG+AGG | 0.521554 | 5.1:-55030749 | None:intergenic |
| AAATATCTGCACTCGCGTCT+GGG | 0.523440 | 5.1:+55030669 | MS.gene57019:CDS |
| CAAAGGGTTGGATGTAATAC+CGG | 0.523709 | 5.1:+55030710 | MS.gene57019:CDS |
| GTTCCATTTGAGAGCAAGGT+GGG | 0.529726 | 5.1:-55031524 | None:intergenic |
| TCCTAATGCGGCTGAAATGA+AGG | 0.539155 | 5.1:+55030593 | MS.gene57019:CDS |
| CTGAATGTTCGTCTGGATGA+AGG | 0.539522 | 5.1:+55031059 | MS.gene57019:CDS |
| CATAGTTCCATTTGAGAGCA+AGG | 0.540272 | 5.1:-55031528 | None:intergenic |
| ATGTGCTGTCTAAAGGTCCT+TGG | 0.541302 | 5.1:+55030784 | MS.gene57019:CDS |
| CTGGGAGATATGTGGAGACC+AGG | 0.544835 | 5.1:+55030687 | MS.gene57019:CDS |
| GATGGTGAAATCGCCGGAGA+CGG | 0.548231 | 5.1:+55031289 | MS.gene57019:CDS |
| TAAACTTGACATATGGGTGC+AGG | 0.550952 | 5.1:+55030878 | MS.gene57019:CDS |
| AGGAAGGTAATGATGCTGAT+GGG | 0.552966 | 5.1:+55031579 | MS.gene57019:CDS |
| GGGTTAACGATTGGTGAAGA+AGG | 0.555235 | 5.1:+55030552 | MS.gene57019:CDS |
| TTCTTTGAATTCTCCCAAGT+AGG | 0.561536 | 5.1:-55030955 | None:intergenic |
| AACATCGAGGGGTTAACGAT+TGG | 0.564120 | 5.1:+55030543 | MS.gene57019:CDS |
| AGAAGGTATGACCCTTAGGA+TGG | 0.576636 | 5.1:+55030569 | MS.gene57019:CDS |
| AAGCTTCTACTGGGACAGCA+AGG | 0.577557 | 5.1:+55031658 | MS.gene57019:CDS |
| CAGGAAGGTAATGATGCTGA+TGG | 0.578261 | 5.1:+55031578 | MS.gene57019:CDS |
| GTGTTGACCTCATTAACAGT+AGG | 0.578684 | 5.1:-55031464 | None:intergenic |
| GTGGAGACCAGGCAAAGGGT+TGG | 0.586406 | 5.1:+55030698 | MS.gene57019:CDS |
| CGCATTAGGATCCATCCTAA+GGG | 0.590186 | 5.1:-55030580 | None:intergenic |
| GATATGTGGAGACCAGGCAA+AGG | 0.596794 | 5.1:+55030693 | MS.gene57019:CDS |
| GGAAGGTAATGATGCTGATG+GGG | 0.596920 | 5.1:+55031580 | MS.gene57019:CDS |
| GCGGCTGAAATGAAGGTGCT+TGG | 0.598269 | 5.1:+55030600 | MS.gene57019:CDS |
| GGAAGTGATGGTGAAATCGC+CGG | 0.599386 | 5.1:+55031283 | MS.gene57019:CDS |
| TGAAGACAACAGGAAGGCCA+TGG | 0.599809 | 5.1:-55030902 | None:intergenic |
| AGATGGTGAAAGCTTCTACT+GGG | 0.602366 | 5.1:+55031649 | MS.gene57019:CDS |
| TGAGAGCAAGGTGGGGACCA+CGG | 0.604896 | 5.1:-55031516 | None:intergenic |
| GGCTAGTGCTGACAGTAATG+AGG | 0.605394 | 5.1:+55031382 | MS.gene57019:CDS |
| TTTGCATTATCATACATCCA+AGG | 0.606633 | 5.1:-55030801 | None:intergenic |
| AATGAAATAATGGAACAGGA+AGG | 0.609913 | 5.1:+55031563 | MS.gene57019:CDS |
| CATGCAGGAAAAGGTTGGGA+GGG | 0.610407 | 5.1:+55030923 | MS.gene57019:CDS |
| ATATGTGGAGACCAGGCAAA+GGG | 0.611893 | 5.1:+55030694 | MS.gene57019:CDS |
| AGCTTCTACTGGGACAGCAA+GGG | 0.613861 | 5.1:+55031659 | MS.gene57019:CDS |
| TGTGTCACCTACTGTTAATG+AGG | 0.614826 | 5.1:+55031457 | MS.gene57019:CDS |
| GCTACAAATCTGAACATCGA+GGG | 0.617949 | 5.1:+55030531 | MS.gene57019:CDS |
| CGATTCACAGTAGGTACATG+AGG | 0.620669 | 5.1:+55030994 | MS.gene57019:CDS |
| GAATACGACCTATCAGGCAG+TGG | 0.623122 | 5.1:-55030623 | None:intergenic |
| GAGTCTTGATCCGGAAGTGA+TGG | 0.625403 | 5.1:+55031271 | MS.gene57019:intron |
| ACTCGCGTCTGGGAGATATG+TGG | 0.627098 | 5.1:+55030679 | MS.gene57019:CDS |
| CAGTAGGTACATGAGGCTGA+AGG | 0.627329 | 5.1:+55031001 | MS.gene57019:CDS |
| TTCCATTTGAGAGCAAGGTG+GGG | 0.629153 | 5.1:-55031523 | None:intergenic |
| AGCGTAATTCGATTCACAGT+AGG | 0.634990 | 5.1:+55030985 | MS.gene57019:CDS |
| ATGCAGGAAAAGGTTGGGAG+GGG | 0.635082 | 5.1:+55030924 | MS.gene57019:CDS |
| CCTTAGGATGGATCCTAATG+CGG | 0.639409 | 5.1:+55030581 | MS.gene57019:CDS |
| AGGGTTGGATGTAATACCGG+TGG | 0.640570 | 5.1:+55030713 | MS.gene57019:CDS |
| AGAAGTTCCAAAATCAGCAA+CGG | 0.646540 | 5.1:+55030851 | MS.gene57019:CDS |
| TCATGCAGGAAAAGGTTGGG+AGG | 0.647677 | 5.1:+55030922 | MS.gene57019:CDS |
| AGTTCCATTTGAGAGCAAGG+TGG | 0.654052 | 5.1:-55031525 | None:intergenic |
| CTACAAATCTGAACATCGAG+GGG | 0.661141 | 5.1:+55030532 | MS.gene57019:CDS |
| GTAATGAGGAAGTTAATGAG+AGG | 0.669509 | 5.1:+55031396 | MS.gene57019:CDS |
| GAAGGTAATGATGCTGATGG+GGG | 0.671000 | 5.1:+55031581 | MS.gene57019:CDS |
| TAATCAAGGAGGCATTAATG+TGG | 0.671652 | 5.1:+55031340 | MS.gene57019:CDS |
| CCTGCATGAAGACAACAGGA+AGG | 0.685760 | 5.1:-55030908 | None:intergenic |
| GCGAGTGCAGATATTTGAGA+CGG | 0.690444 | 5.1:-55030662 | None:intergenic |
| TAACATTCCTAATTCCTCCG+TGG | 0.692939 | 5.1:+55031499 | MS.gene57019:CDS |
| GGCTACAAATCTGAACATCG+AGG | 0.696746 | 5.1:+55030530 | MS.gene57019:CDS |
| ATTCTCCCAAGTAGGCACCA+AGG | 0.717040 | 5.1:-55030947 | None:intergenic |
| AGTTCGGCCAGTAATCAAGG+AGG | 0.768839 | 5.1:+55031329 | MS.gene57019:CDS |
| GAGCAAGGTGGGGACCACGG+AGG | 0.785384 | 5.1:-55031513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATGTGCAAAATAATAAT+AGG | + | chr5.1:55031423-55031442 | MS.gene57019:CDS | 20.0% |
| !! | TCATGTGCAAAATAATAATA+GGG | + | chr5.1:55031424-55031443 | MS.gene57019:CDS | 20.0% |
| !! | TGTTCCATTATTTCATTATT+AGG | - | chr5.1:55031560-55031579 | None:intergenic | 20.0% |
| !!! | TAATAATGAAATAATGGAAC+AGG | + | chr5.1:55031559-55031578 | MS.gene57019:CDS | 20.0% |
| ! | CAGATAAATCTTGTAAGAAA+AGG | + | chr5.1:55031156-55031175 | MS.gene57019:CDS | 25.0% |
| ! | GAAGGAAAATTGATTAAAGA+TGG | + | chr5.1:55031632-55031651 | MS.gene57019:CDS | 25.0% |
| ! | TCTTACAAGATTTATCTGTA+TGG | - | chr5.1:55031154-55031173 | None:intergenic | 25.0% |
| ATTCTTCGACAAAAAACAAG+TGG | + | chr5.1:55031249-55031268 | MS.gene57019:intron | 30.0% | |
| CTTAAAGCAGATTAGAAAAG+AGG | + | chr5.1:55031224-55031243 | MS.gene57019:intron | 30.0% | |
| GCGAATTGAAGAAAAGAAAA+AGG | + | chr5.1:55031603-55031622 | MS.gene57019:CDS | 30.0% | |
| GCTGCCTAATAATGAAATAA+TGG | + | chr5.1:55031553-55031572 | MS.gene57019:CDS | 30.0% | |
| GGTGAATAAACTTGACATAT+GGG | + | chr5.1:55030872-55030891 | MS.gene57019:CDS | 30.0% | |
| TTTGCATTATCATACATCCA+AGG | - | chr5.1:55030804-55030823 | None:intergenic | 30.0% | |
| ! | AATGAAATAATGGAACAGGA+AGG | + | chr5.1:55031563-55031582 | MS.gene57019:CDS | 30.0% |
| ! | GAAAAGGTTTGACTTAGAAA+AGG | + | chr5.1:55031172-55031191 | MS.gene57019:intron | 30.0% |
| ! | TTTGACTTAGAAAAGGATGA+TGG | + | chr5.1:55031179-55031198 | MS.gene57019:intron | 30.0% |
| AAAAGAAAAAGGAGCGATGA+AGG | + | chr5.1:55031614-55031633 | MS.gene57019:CDS | 35.0% | |
| AAACAAATTCCTCTTCCAGT+TGG | + | chr5.1:55030740-55030759 | MS.gene57019:CDS | 35.0% | |
| AACAAATTCCTCTTCCAGTT+GGG | + | chr5.1:55030741-55030760 | MS.gene57019:CDS | 35.0% | |
| ACCATTCAAAAAATTGCACC+GGG | + | chr5.1:55030828-55030847 | MS.gene57019:CDS | 35.0% | |
| AGAAGTTCCAAAATCAGCAA+CGG | + | chr5.1:55030851-55030870 | MS.gene57019:CDS | 35.0% | |
| ATTAATGCCTCCTTGATTAC+TGG | - | chr5.1:55031339-55031358 | None:intergenic | 35.0% | |
| CACCATTCAAAAAATTGCAC+CGG | + | chr5.1:55030827-55030846 | MS.gene57019:CDS | 35.0% | |
| CGGTGAATAAACTTGACATA+TGG | + | chr5.1:55030871-55030890 | MS.gene57019:CDS | 35.0% | |
| GTAATGAGGAAGTTAATGAG+AGG | + | chr5.1:55031396-55031415 | MS.gene57019:CDS | 35.0% | |
| TAATGTGGCTGCATCAAATA+TGG | + | chr5.1:55031355-55031374 | MS.gene57019:CDS | 35.0% | |
| TTCTTTGAATTCTCCCAAGT+AGG | - | chr5.1:55030958-55030977 | None:intergenic | 35.0% | |
| ! | TAGAAAAGGATGATGGTAAC+CGG | + | chr5.1:55031186-55031205 | MS.gene57019:intron | 35.0% |
| !! | TAATCAAGGAGGCATTAATG+TGG | + | chr5.1:55031340-55031359 | MS.gene57019:CDS | 35.0% |
| !!! | AGGAATTTGTTTTGATCCAC+CGG | - | chr5.1:55030732-55030751 | None:intergenic | 35.0% |
| !!! | TTATTCACCGTTGCTGATTT+TGG | - | chr5.1:55030861-55030880 | None:intergenic | 35.0% |
| AAACAAGTGGAGTCTTGATC+CGG | + | chr5.1:55031262-55031281 | MS.gene57019:intron | 40.0% | |
| AAGATGGTGAAAGCTTCTAC+TGG | + | chr5.1:55031648-55031667 | MS.gene57019:CDS | 40.0% | |
| ACATTCAGGCCTTTCTTCAA+AGG | - | chr5.1:55031047-55031066 | None:intergenic | 40.0% | |
| AGATGGTGAAAGCTTCTACT+GGG | + | chr5.1:55031649-55031668 | MS.gene57019:CDS | 40.0% | |
| AGCGTAATTCGATTCACAGT+AGG | + | chr5.1:55030985-55031004 | MS.gene57019:CDS | 40.0% | |
| AGGAAGGTAATGATGCTGAT+GGG | + | chr5.1:55031579-55031598 | MS.gene57019:CDS | 40.0% | |
| CAAAGGGTTGGATGTAATAC+CGG | + | chr5.1:55030710-55030729 | MS.gene57019:CDS | 40.0% | |
| CAGTTCAAGTACGAGAAGTT+GGG | + | chr5.1:55031098-55031117 | MS.gene57019:CDS | 40.0% | |
| CATAGTTCCATTTGAGAGCA+AGG | - | chr5.1:55031531-55031550 | None:intergenic | 40.0% | |
| CTACAAATCTGAACATCGAG+GGG | + | chr5.1:55030532-55030551 | MS.gene57019:CDS | 40.0% | |
| GCTACAAATCTGAACATCGA+GGG | + | chr5.1:55030531-55030550 | MS.gene57019:CDS | 40.0% | |
| GGCTGCATCAAATATGGAAA+CGG | + | chr5.1:55031361-55031380 | MS.gene57019:CDS | 40.0% | |
| GTTCATCATGTGCTGTCTAA+AGG | + | chr5.1:55030777-55030796 | MS.gene57019:CDS | 40.0% | |
| TAAACTTGACATATGGGTGC+AGG | + | chr5.1:55030878-55030897 | MS.gene57019:CDS | 40.0% | |
| TAACATTCCTAATTCCTCCG+TGG | + | chr5.1:55031499-55031518 | MS.gene57019:CDS | 40.0% | |
| TAAGATTATTGCTCCAGTCC+CGG | - | chr5.1:55031208-55031227 | None:intergenic | 40.0% | |
| TCAGTTCAAGTACGAGAAGT+TGG | + | chr5.1:55031097-55031116 | MS.gene57019:CDS | 40.0% | |
| TCTTCATGCAGGAAAAGGTT+GGG | + | chr5.1:55030919-55030938 | MS.gene57019:CDS | 40.0% | |
| TGCTTTCTGTGTGGTGTAAT+TGG | + | chr5.1:55031128-55031147 | MS.gene57019:CDS | 40.0% | |
| TGTGTCACCTACTGTTAATG+AGG | + | chr5.1:55031457-55031476 | MS.gene57019:CDS | 40.0% | |
| TGTTGTCTTCATGCAGGAAA+AGG | + | chr5.1:55030914-55030933 | MS.gene57019:CDS | 40.0% | |
| ! | AGAAAAGGATGATGGTAACC+GGG | + | chr5.1:55031187-55031206 | MS.gene57019:intron | 40.0% |
| ! | GCACATGATGAACATCGATT+TGG | - | chr5.1:55030770-55030789 | None:intergenic | 40.0% |
| ! | GCAGATCTTCCTTTGAAGAA+AGG | + | chr5.1:55031035-55031054 | MS.gene57019:CDS | 40.0% |
| ! | GTGTTGACCTCATTAACAGT+AGG | - | chr5.1:55031467-55031486 | None:intergenic | 40.0% |
| ! | TTTTCCTGCATGAAGACAAC+AGG | - | chr5.1:55030915-55030934 | None:intergenic | 40.0% |
| !! | GCAAGGGAGAGTTTTTGTTT+TGG | + | chr5.1:55031675-55031694 | MS.gene57019:CDS | 40.0% |
| !!! | TCCCGGTGCAATTTTTTGAA+TGG | - | chr5.1:55030832-55030851 | None:intergenic | 40.0% |
| AAATATCTGCACTCGCGTCT+GGG | + | chr5.1:55030669-55030688 | MS.gene57019:CDS | 45.0% | |
| AACATCGAGGGGTTAACGAT+TGG | + | chr5.1:55030543-55030562 | MS.gene57019:CDS | 45.0% | |
| ACCTTCATTTCAGCCGCATT+AGG | - | chr5.1:55030597-55030616 | None:intergenic | 45.0% | |
| AGTTCCATTTGAGAGCAAGG+TGG | - | chr5.1:55031528-55031547 | None:intergenic | 45.0% | |
| ATATGTGGAGACCAGGCAAA+GGG | + | chr5.1:55030694-55030713 | MS.gene57019:CDS | 45.0% | |
| ATGTGCTGTCTAAAGGTCCT+TGG | + | chr5.1:55030784-55030803 | MS.gene57019:CDS | 45.0% | |
| ATTACATCCAACCCTTTGCC+TGG | - | chr5.1:55030708-55030727 | None:intergenic | 45.0% | |
| CAGGAAGGTAATGATGCTGA+TGG | + | chr5.1:55031578-55031597 | MS.gene57019:CDS | 45.0% | |
| CCTTAGGATGGATCCTAATG+CGG | + | chr5.1:55030581-55030600 | MS.gene57019:CDS | 45.0% | |
| CGATTCACAGTAGGTACATG+AGG | + | chr5.1:55030994-55031013 | MS.gene57019:CDS | 45.0% | |
| CGCATTAGGATCCATCCTAA+GGG | - | chr5.1:55030583-55030602 | None:intergenic | 45.0% | |
| CTGAATGTTCGTCTGGATGA+AGG | + | chr5.1:55031059-55031078 | MS.gene57019:CDS | 45.0% | |
| CTGTCAGAATACGACCTATC+AGG | - | chr5.1:55030632-55030651 | None:intergenic | 45.0% | |
| CTTCATCCAGACGAACATTC+AGG | - | chr5.1:55031061-55031080 | None:intergenic | 45.0% | |
| GAAGGTAATGATGCTGATGG+GGG | + | chr5.1:55031581-55031600 | MS.gene57019:CDS | 45.0% | |
| GCGAGTGCAGATATTTGAGA+CGG | - | chr5.1:55030665-55030684 | None:intergenic | 45.0% | |
| GGAAGGTAATGATGCTGATG+GGG | + | chr5.1:55031580-55031599 | MS.gene57019:CDS | 45.0% | |
| GGCTACAAATCTGAACATCG+AGG | + | chr5.1:55030530-55030549 | MS.gene57019:CDS | 45.0% | |
| GGGTTAACGATTGGTGAAGA+AGG | + | chr5.1:55030552-55030571 | MS.gene57019:CDS | 45.0% | |
| GTCTTCATGCAGGAAAAGGT+TGG | + | chr5.1:55030918-55030937 | MS.gene57019:CDS | 45.0% | |
| GTTCCATTTGAGAGCAAGGT+GGG | - | chr5.1:55031527-55031546 | None:intergenic | 45.0% | |
| TCCTAATGCGGCTGAAATGA+AGG | + | chr5.1:55030593-55030612 | MS.gene57019:CDS | 45.0% | |
| TTCCATTTGAGAGCAAGGTG+GGG | - | chr5.1:55031526-55031545 | None:intergenic | 45.0% | |
| ! | AGAAGGTATGACCCTTAGGA+TGG | + | chr5.1:55030569-55030588 | MS.gene57019:CDS | 45.0% |
| ! | GGAGTTTTCTGCTTTCTGTG+TGG | + | chr5.1:55031119-55031138 | MS.gene57019:CDS | 45.0% |
| ! | GTGAAGAAGGTATGACCCTT+AGG | + | chr5.1:55030565-55030584 | MS.gene57019:CDS | 45.0% |
| !!! | GCTGATTTTGGAACTTCTCC+CGG | - | chr5.1:55030849-55030868 | None:intergenic | 45.0% |
| AAGCTTCTACTGGGACAGCA+AGG | + | chr5.1:55031658-55031677 | MS.gene57019:CDS | 50.0% | |
| AGCTTCTACTGGGACAGCAA+GGG | + | chr5.1:55031659-55031678 | MS.gene57019:CDS | 50.0% | |
| AGGGTTGGATGTAATACCGG+TGG | + | chr5.1:55030713-55030732 | MS.gene57019:CDS | 50.0% | |
| AGTTCGGCCAGTAATCAAGG+AGG | + | chr5.1:55031329-55031348 | MS.gene57019:CDS | 50.0% | |
| ATGCAGGAAAAGGTTGGGAG+GGG | + | chr5.1:55030924-55030943 | MS.gene57019:CDS | 50.0% | |
| ATTCTCCCAAGTAGGCACCA+AGG | - | chr5.1:55030950-55030969 | None:intergenic | 50.0% | |
| CAAATATCTGCACTCGCGTC+TGG | + | chr5.1:55030668-55030687 | MS.gene57019:CDS | 50.0% | |
| CAGAGTTCGGCCAGTAATCA+AGG | + | chr5.1:55031326-55031345 | MS.gene57019:CDS | 50.0% | |
| CAGTAGGTACATGAGGCTGA+AGG | + | chr5.1:55031001-55031020 | MS.gene57019:CDS | 50.0% | |
| CATGCAGGAAAAGGTTGGGA+GGG | + | chr5.1:55030923-55030942 | MS.gene57019:CDS | 50.0% | |
| CCGCATTAGGATCCATCCTA+AGG | - | chr5.1:55030584-55030603 | None:intergenic | 50.0% | |
| CCTGCATGAAGACAACAGGA+AGG | - | chr5.1:55030911-55030930 | None:intergenic | 50.0% | |
| CCTTCCTGTTGTCTTCATGC+AGG | + | chr5.1:55030908-55030927 | MS.gene57019:CDS | 50.0% | |
| GAAAGGCCTGAATGTTCGTC+TGG | + | chr5.1:55031052-55031071 | MS.gene57019:CDS | 50.0% | |
| GAATACGACCTATCAGGCAG+TGG | - | chr5.1:55030626-55030645 | None:intergenic | 50.0% | |
| GAGTCTTGATCCGGAAGTGA+TGG | + | chr5.1:55031271-55031290 | MS.gene57019:intron | 50.0% | |
| GATATGTGGAGACCAGGCAA+AGG | + | chr5.1:55030693-55030712 | MS.gene57019:CDS | 50.0% | |
| GGCGATTTCACCATCACTTC+CGG | - | chr5.1:55031284-55031303 | None:intergenic | 50.0% | |
| TCATGCAGGAAAAGGTTGGG+AGG | + | chr5.1:55030922-55030941 | MS.gene57019:CDS | 50.0% | |
| TGAAGACAACAGGAAGGCCA+TGG | - | chr5.1:55030905-55030924 | None:intergenic | 50.0% | |
| ! | GGAAGTGATGGTGAAATCGC+CGG | + | chr5.1:55031283-55031302 | MS.gene57019:CDS | 50.0% |
| ! | TTTGGTGACCCAACTGGAAG+AGG | - | chr5.1:55030752-55030771 | None:intergenic | 50.0% |
| !! | CATCGATTTGGTGACCCAAC+TGG | - | chr5.1:55030758-55030777 | None:intergenic | 50.0% |
| !! | GGCTAGTGCTGACAGTAATG+AGG | + | chr5.1:55031382-55031401 | MS.gene57019:CDS | 50.0% |
| !! | TCGTCTGGATGAAGGTGCTT+GGG | + | chr5.1:55031067-55031086 | MS.gene57019:CDS | 50.0% |
| !! | TTCGTCTGGATGAAGGTGCT+TGG | + | chr5.1:55031066-55031085 | MS.gene57019:CDS | 50.0% |
| ACTCGCGTCTGGGAGATATG+TGG | + | chr5.1:55030679-55030698 | MS.gene57019:CDS | 55.0% | |
| CTGGGAGATATGTGGAGACC+AGG | + | chr5.1:55030687-55030706 | MS.gene57019:CDS | 55.0% | |
| GACATATGGGTGCAGGTCCA+TGG | + | chr5.1:55030885-55030904 | MS.gene57019:CDS | 55.0% | |
| GATGGTGAAATCGCCGGAGA+CGG | + | chr5.1:55031289-55031308 | MS.gene57019:CDS | 55.0% | |
| GTCCCCACCTTGCTCTCAAA+TGG | + | chr5.1:55031521-55031540 | MS.gene57019:CDS | 55.0% | |
| ! | AGGATGATGGTAACCGGGAC+TGG | + | chr5.1:55031192-55031211 | MS.gene57019:intron | 55.0% |
| !! | GCGGCTGAAATGAAGGTGCT+TGG | + | chr5.1:55030600-55030619 | MS.gene57019:CDS | 55.0% |
| GAAAAGGTTGGGAGGGGCCT+TGG | + | chr5.1:55030930-55030949 | MS.gene57019:CDS | 60.0% | |
| GTGCTTGGCCACTGCCTGAT+AGG | + | chr5.1:55030615-55030634 | MS.gene57019:CDS | 60.0% | |
| GTGGAGACCAGGCAAAGGGT+TGG | + | chr5.1:55030698-55030717 | MS.gene57019:CDS | 60.0% | |
| GTGGGGACCACGGAGGAATT+AGG | - | chr5.1:55031509-55031528 | None:intergenic | 60.0% | |
| TGAGAGCAAGGTGGGGACCA+CGG | - | chr5.1:55031519-55031538 | None:intergenic | 60.0% | |
| !! | AGGGGCCTTGGTGCCTACTT+GGG | + | chr5.1:55030942-55030961 | MS.gene57019:CDS | 60.0% |
| AAATCGCCGGAGACGGCTGC+CGG | + | chr5.1:55031296-55031315 | MS.gene57019:CDS | 65.0% | |
| TGCCGGAGGGGGACAGAGTT+CGG | + | chr5.1:55031313-55031332 | MS.gene57019:CDS | 65.0% | |
| !! | GAGGGGCCTTGGTGCCTACT+TGG | + | chr5.1:55030941-55030960 | MS.gene57019:CDS | 65.0% |
| GAGCAAGGTGGGGACCACGG+AGG | - | chr5.1:55031516-55031535 | None:intergenic | 70.0% | |
| GGCCGAACTCTGTCCCCCTC+CGG | - | chr5.1:55031318-55031337 | None:intergenic | 70.0% | |
| ! | CCCCCTCCGGCAGCCGTCTC+CGG | - | chr5.1:55031305-55031324 | None:intergenic | 80.0% |
| ! | CCGGAGACGGCTGCCGGAGG+GGG | + | chr5.1:55031302-55031321 | MS.gene57019:CDS | 80.0% |
| ! | CGCCGGAGACGGCTGCCGGA+GGG | + | chr5.1:55031300-55031319 | MS.gene57019:CDS | 80.0% |
| ! | GCCGGAGACGGCTGCCGGAG+GGG | + | chr5.1:55031301-55031320 | MS.gene57019:CDS | 80.0% |
| ! | TCGCCGGAGACGGCTGCCGG+AGG | + | chr5.1:55031299-55031318 | MS.gene57019:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 55030528 | 55031700 | 55030528 | ID=MS.gene57019 |
| chr5.1 | mRNA | 55030528 | 55031700 | 55030528 | ID=MS.gene57019.t1;Parent=MS.gene57019 |
| chr5.1 | exon | 55030528 | 55031177 | 55030528 | ID=MS.gene57019.t1.exon1;Parent=MS.gene57019.t1 |
| chr5.1 | CDS | 55030528 | 55031177 | 55030528 | ID=cds.MS.gene57019.t1;Parent=MS.gene57019.t1 |
| chr5.1 | exon | 55031274 | 55031700 | 55031274 | ID=MS.gene57019.t1.exon2;Parent=MS.gene57019.t1 |
| chr5.1 | CDS | 55031274 | 55031700 | 55031274 | ID=cds.MS.gene57019.t1;Parent=MS.gene57019.t1 |
| Gene Sequence |
| Protein sequence |
