Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057934.t1 | AES70414.1 | 56.4 | 305 | 104 | 5 | 1 | 301 | 1 | 280 | 1.10E-83 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057934.t1 | G7J017 | 56.4 | 305 | 104 | 5 | 1 | 301 | 1 | 280 | 7.7e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057934 | MS.gene51799 | 0.922348 | 1.11E-88 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057934.t1 | MTR_3g053920 | 56.393 | 305 | 104 | 5 | 1 | 301 | 1 | 280 | 6.62e-107 | 315 |
| MS.gene057934.t1 | MTR_2g061500 | 71.318 | 129 | 37 | 0 | 1 | 129 | 1 | 129 | 1.82e-62 | 197 |
| MS.gene057934.t1 | MTR_4g103530 | 48.165 | 218 | 73 | 4 | 55 | 269 | 1 | 181 | 2.51e-57 | 186 |
| MS.gene057934.t1 | MTR_7g011710 | 68.539 | 89 | 28 | 0 | 55 | 143 | 1 | 89 | 2.15e-38 | 135 |
| MS.gene057934.t1 | MTR_6g033215 | 34.375 | 128 | 84 | 0 | 29 | 156 | 122 | 249 | 4.32e-23 | 98.2 |
| MS.gene057934.t1 | MTR_0010s0370 | 34.161 | 161 | 100 | 5 | 11 | 168 | 7 | 164 | 5.20e-22 | 92.8 |
| MS.gene057934.t1 | MTR_0010s0350 | 34.161 | 161 | 100 | 5 | 11 | 168 | 7 | 164 | 5.20e-22 | 92.8 |
| MS.gene057934.t1 | MTR_8g463110 | 58.197 | 122 | 39 | 4 | 248 | 364 | 1 | 115 | 1.20e-21 | 97.1 |
| MS.gene057934.t1 | MTR_1g036720 | 34.615 | 104 | 66 | 1 | 11 | 112 | 7 | 110 | 4.41e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 103 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAGCTTGAAAATTATTT+TGG | 0.174825 | 3.3:-14920637 | None:intergenic |
| CACTCTCCCTTTGAATTATA+TGG | 0.189099 | 3.3:+14920196 | MS.gene057934:CDS |
| CGGTTTCAGCGGTTAGGTTA+AGG | 0.288654 | 3.3:-14919914 | None:intergenic |
| CTTTGCTGCTGTTGGGGTTG+TGG | 0.303240 | 3.3:+14921021 | MS.gene057934:CDS |
| CAGGTTCATGGTCTGCCTTT+TGG | 0.321795 | 3.3:+14920230 | MS.gene057934:CDS |
| CAGATGATGGTGTGCGCAAC+TGG | 0.323275 | 3.3:+14920525 | MS.gene057934:CDS |
| AGTCCTCCTTTGCTGCTGTT+GGG | 0.325413 | 3.3:+14921014 | MS.gene057934:CDS |
| GGACATGCGTTCACTGAAAT+AGG | 0.332477 | 3.3:-14920003 | None:intergenic |
| TTTGCTGCTGTTGGGGTTGT+GGG | 0.332689 | 3.3:+14921022 | MS.gene057934:CDS |
| AGGAACAAATGTTAGTGTTC+GGG | 0.337183 | 3.3:+14921057 | MS.gene057934:CDS |
| AAGCCTGTCACGACACGTAT+AGG | 0.353037 | 3.3:+14920560 | MS.gene057934:CDS |
| GAGTCCTCCTTTGCTGCTGT+TGG | 0.372371 | 3.3:+14921013 | MS.gene057934:CDS |
| ATCAAGGATAGGAGAGGTTT+CGG | 0.372890 | 3.3:-14919934 | None:intergenic |
| GGTTTCAGCGGTTAGGTTAA+GGG | 0.388971 | 3.3:-14919913 | None:intergenic |
| ATGATGCCTTGAGCTACCTT+TGG | 0.400512 | 3.3:-14920263 | None:intergenic |
| ATCCTTGATCCTTGTTTGAT+CGG | 0.406736 | 3.3:+14919948 | MS.gene057934:CDS |
| GTGTCCTAACTTGTTCGAAT+TGG | 0.409748 | 3.3:+14920499 | MS.gene057934:CDS |
| TAGGAACAAATGTTAGTGTT+CGG | 0.415446 | 3.3:+14921056 | MS.gene057934:CDS |
| GAGTCCAATTCGAACAAGTT+AGG | 0.418936 | 3.3:-14920503 | None:intergenic |
| TTTCAAGCTGGTTCTTCTGC+TGG | 0.420860 | 3.3:+14920647 | MS.gene057934:CDS |
| TGTTATGGCCATCGTAGGTT+TGG | 0.421757 | 3.3:-14920304 | None:intergenic |
| GTTTGGCATAACATCAGGTA+TGG | 0.424960 | 3.3:-14920615 | None:intergenic |
| AGCCTGTCACGACACGTATA+GGG | 0.429313 | 3.3:+14920561 | MS.gene057934:CDS |
| GACATATGTGTACAGGTTCA+TGG | 0.436675 | 3.3:+14920218 | MS.gene057934:CDS |
| CAGGGTCATTCTATTGTGCT+TGG | 0.442529 | 3.3:+14920866 | MS.gene057934:CDS |
| GTCAGCATCAGACTTAATAA+TGG | 0.444822 | 3.3:-14920054 | None:intergenic |
| ATGAAAATTATCATATAGCC+AGG | 0.449250 | 3.3:-14920135 | None:intergenic |
| TTCCACCAACAAGTGGTTGC+AGG | 0.456050 | 3.3:+14920589 | MS.gene057934:CDS |
| GTCCTCCTTTGCTGCTGTTG+GGG | 0.462620 | 3.3:+14921015 | MS.gene057934:CDS |
| GTTAAGTTGCGTGGGATCCA+TGG | 0.465067 | 3.3:-14919856 | None:intergenic |
| CGCGTGCTCGCGCTTCAGAA+TGG | 0.465851 | 3.3:+14920989 | MS.gene057934:CDS |
| AGGTTTCGGTTTCAGCGGTT+AGG | 0.469924 | 3.3:-14919920 | None:intergenic |
| GGGGTCCTGCAACCACTTGT+TGG | 0.471537 | 3.3:-14920594 | None:intergenic |
| TTTGGTTGAATGAAACCAAA+AGG | 0.488252 | 3.3:-14920245 | None:intergenic |
| TAACGTCGATGGACTCACTT+TGG | 0.488365 | 3.3:+14919875 | MS.gene057934:CDS |
| ATACCATCACCTTCGCTTGG+AGG | 0.495325 | 3.3:-14920929 | None:intergenic |
| TATGGCCATCGTAGGTTTGG+AGG | 0.501051 | 3.3:-14920301 | None:intergenic |
| TTCTTCATCCACAAGAACTT+CGG | 0.502382 | 3.3:+14920829 | MS.gene057934:CDS |
| AGGAACTGTGAATGGTGTTA+TGG | 0.505135 | 3.3:-14920319 | None:intergenic |
| TGCGAGCAACATCTAGTTTG+TGG | 0.507760 | 3.3:-14920097 | None:intergenic |
| GACCGATCAAACAAGGATCA+AGG | 0.508082 | 3.3:-14919950 | None:intergenic |
| GTTGTGGGAAATGATGTAAT+AGG | 0.509266 | 3.3:+14921037 | MS.gene057934:CDS |
| GTCATGGAACGCATTGCTCC+AGG | 0.512533 | 3.3:+14920161 | MS.gene057934:CDS |
| ATGACCCTGGTGCAAGTTTG+AGG | 0.514751 | 3.3:-14920852 | None:intergenic |
| TATTCTTGATGATGCTGGTT+CGG | 0.515045 | 3.3:+14920949 | MS.gene057934:CDS |
| CATATGTCCATATAATTCAA+AGG | 0.515130 | 3.3:-14920203 | None:intergenic |
| AGAGTGATCGGAACAACACC+TGG | 0.522820 | 3.3:-14920179 | None:intergenic |
| GTGTGGCATTCTCAGACATT+CGG | 0.523325 | 3.3:+14920469 | MS.gene057934:CDS |
| GACCCTATACGTGTCGTGAC+AGG | 0.523457 | 3.3:-14920563 | None:intergenic |
| CAGAAGCATCAATAGTGGTT+CGG | 0.524075 | 3.3:-14920670 | None:intergenic |
| GTGAACGCATGTCCCGTGCT+TGG | 0.526053 | 3.3:+14920012 | MS.gene057934:CDS |
| TTATATGGACATATGTGTAC+AGG | 0.532436 | 3.3:+14920211 | MS.gene057934:CDS |
| CACAACCCCAACAGCAGCAA+AGG | 0.533314 | 3.3:-14921020 | None:intergenic |
| CACAACAGAAGCATCAATAG+TGG | 0.534843 | 3.3:-14920675 | None:intergenic |
| TTCGAATTGGACTCAGATGA+TGG | 0.535770 | 3.3:+14920512 | MS.gene057934:CDS |
| AGAATACCATCACCTTCGCT+TGG | 0.538987 | 3.3:-14920932 | None:intergenic |
| TTCGGCCTCAAACTTGCACC+AGG | 0.542270 | 3.3:+14920847 | MS.gene057934:CDS |
| GTTTGAGGCCGAAGTTCTTG+TGG | 0.547485 | 3.3:-14920837 | None:intergenic |
| GAAGTTCTTGTGGATGAAGA+AGG | 0.548594 | 3.3:-14920827 | None:intergenic |
| TCCATCGACGTTAAGTTGCG+TGG | 0.552863 | 3.3:-14919865 | None:intergenic |
| TGGACTCACTTTGGATGATG+AGG | 0.553001 | 3.3:+14919884 | MS.gene057934:CDS |
| GGACTCACTTTGGATGATGA+GGG | 0.555606 | 3.3:+14919885 | MS.gene057934:CDS |
| GTCCTGCAACCACTTGTTGG+TGG | 0.558049 | 3.3:-14920591 | None:intergenic |
| TAATTCAAAGGGAGAGTGAT+CGG | 0.563226 | 3.3:-14920191 | None:intergenic |
| GATGGTATTCTTGATGATGC+TGG | 0.563862 | 3.3:+14920944 | MS.gene057934:CDS |
| GCATCCTTGATGATGGTCCC+TGG | 0.565287 | 3.3:+14920117 | MS.gene057934:CDS |
| GTAAAAGTGAAAGGAGCCGC+AGG | 0.566547 | 3.3:-14920893 | None:intergenic |
| ATATGTCCATATAATTCAAA+GGG | 0.569123 | 3.3:-14920202 | None:intergenic |
| AGATGATGGTGTGCGCAACT+GGG | 0.574460 | 3.3:+14920526 | MS.gene057934:CDS |
| CCCACGCAACTTAACGTCGA+TGG | 0.575889 | 3.3:+14919864 | MS.gene057934:CDS |
| AAACACGACACAGGTGGTGT+TGG | 0.582417 | 3.3:+14920785 | MS.gene057934:CDS |
| ATTCAACCAAAGGTAGCTCA+AGG | 0.586529 | 3.3:+14920257 | MS.gene057934:CDS |
| AGGAGAGGTTTCGGTTTCAG+CGG | 0.592635 | 3.3:-14919925 | None:intergenic |
| TTTGGCATAACATCAGGTAT+GGG | 0.593429 | 3.3:-14920614 | None:intergenic |
| CATTCTCAGACATTCGGACA+AGG | 0.594459 | 3.3:+14920475 | MS.gene057934:CDS |
| GCATAGCAGTTTGAGCAGCA+AGG | 0.596401 | 3.3:-14920757 | None:intergenic |
| TTCTTGTGGATGAAGAAGGA+AGG | 0.602821 | 3.3:-14920823 | None:intergenic |
| CATCCTCCAAGCGAAGGTGA+TGG | 0.605652 | 3.3:+14920926 | MS.gene057934:CDS |
| CCATCGACGTTAAGTTGCGT+GGG | 0.607126 | 3.3:-14919864 | None:intergenic |
| GGAACAAATGTTAGTGTTCG+GGG | 0.612761 | 3.3:+14921058 | MS.gene057934:CDS |
| TTAGCACCAGTAAAAGTGAA+AGG | 0.621047 | 3.3:-14920902 | None:intergenic |
| AACAAATGTTAGTGTTCGGG+GGG | 0.622813 | 3.3:+14921060 | MS.gene057934:CDS |
| TGAAAATTATCATATAGCCA+GGG | 0.623131 | 3.3:-14920134 | None:intergenic |
| AACCCCAACAGCAGCAAAGG+AGG | 0.624360 | 3.3:-14921017 | None:intergenic |
| GTTGCTCGCATCCTTGATGA+TGG | 0.625718 | 3.3:+14920110 | MS.gene057934:CDS |
| TATTGTGCTTGGTCTTCCTG+CGG | 0.628511 | 3.3:+14920877 | MS.gene057934:CDS |
| AATGGTGTTATGGCCATCGT+AGG | 0.630125 | 3.3:-14920309 | None:intergenic |
| TCACATGTAGGAACTGTGAA+TGG | 0.631120 | 3.3:-14920327 | None:intergenic |
| ATAGCCAGGGACCATCATCA+AGG | 0.632624 | 3.3:-14920121 | None:intergenic |
| GAACAAATGTTAGTGTTCGG+GGG | 0.636243 | 3.3:+14921059 | MS.gene057934:CDS |
| GCTAAACATCCTCCAAGCGA+AGG | 0.636647 | 3.3:+14920920 | MS.gene057934:CDS |
| ATCAAACAAGGATCAAGGAT+AGG | 0.641814 | 3.3:-14919945 | None:intergenic |
| GGTGTCCTCCAAACCTACGA+TGG | 0.651091 | 3.3:+14920296 | MS.gene057934:CDS |
| TTGGCATAACATCAGGTATG+GGG | 0.652476 | 3.3:-14920613 | None:intergenic |
| ACAAGGATCAAGGATAGGAG+AGG | 0.663267 | 3.3:-14919940 | None:intergenic |
| GGTCGGCTTCCACCAACAAG+TGG | 0.663473 | 3.3:+14920582 | MS.gene057934:CDS |
| ATGCAAGCAAAACACGACAC+AGG | 0.666813 | 3.3:+14920776 | MS.gene057934:CDS |
| GATGATGGTGTGCGCAACTG+GGG | 0.668817 | 3.3:+14920527 | MS.gene057934:CDS |
| CAAGCACAATAGAATGACCC+TGG | 0.685729 | 3.3:-14920865 | None:intergenic |
| CAAGCAAAACACGACACAGG+TGG | 0.698957 | 3.3:+14920779 | MS.gene057934:CDS |
| TGTCACGACACGTATAGGGT+CGG | 0.710118 | 3.3:+14920565 | MS.gene057934:CDS |
| GAGCAACATCTAGTTTGTGG+TGG | 0.714874 | 3.3:-14920094 | None:intergenic |
| TCGGCCTCAAACTTGCACCA+GGG | 0.726007 | 3.3:+14920848 | MS.gene057934:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGTCCATATAATTCAAA+GGG | - | chr3.3:14920205-14920224 | None:intergenic | 20.0% |
| !! | TCACTTAAAAATAAAAGATC+CGG | - | chr3.3:14921255-14921274 | None:intergenic | 20.0% |
| !!! | AATTTTTAATTGGTGACAAT+GGG | - | chr3.3:14922033-14922052 | None:intergenic | 20.0% |
| !!! | CTTCAATGTCAATTTTTAAT+TGG | - | chr3.3:14922043-14922062 | None:intergenic | 20.0% |
| !!! | GAAGTTCTTCAATTTTATTT+CGG | - | chr3.3:14921290-14921309 | None:intergenic | 20.0% |
| !!! | TGATAATTTTCATATAGTCA+TGG | + | chr3.3:14920145-14920164 | MS.gene057934:CDS | 20.0% |
| ! | ATGAAAATTATCATATAGCC+AGG | - | chr3.3:14920138-14920157 | None:intergenic | 25.0% |
| ! | CAAATTGATTAGAAAGTTGA+CGG | - | chr3.3:14921530-14921549 | None:intergenic | 25.0% |
| ! | CACAGTTTCTCATATTTATA+AGG | - | chr3.3:14920434-14920453 | None:intergenic | 25.0% |
| ! | CATATGTCCATATAATTCAA+AGG | - | chr3.3:14920206-14920225 | None:intergenic | 25.0% |
| ! | TCATATCACTATTGAGATTA+TGG | + | chr3.3:14921422-14921441 | MS.gene057934:intron | 25.0% |
| ! | TGAAAATTATCATATAGCCA+GGG | - | chr3.3:14920137-14920156 | None:intergenic | 25.0% |
| ! | TGATGAACAAAATGTAATTG+CGG | + | chr3.3:14921117-14921136 | MS.gene057934:intron | 25.0% |
| !! | AACCAGCTTGAAAATTATTT+TGG | - | chr3.3:14920640-14920659 | None:intergenic | 25.0% |
| !! | ACATTTTGTTCATCATACAA+AGG | - | chr3.3:14921112-14921131 | None:intergenic | 25.0% |
| !!! | AACCAAAATAATTTTCAAGC+TGG | + | chr3.3:14920635-14920654 | MS.gene057934:CDS | 25.0% |
| !!! | CAATTTTTAATTGGTGACAA+TGG | - | chr3.3:14922034-14922053 | None:intergenic | 25.0% |
| !!! | GCTTGAAAATTATTTTGGTT+TGG | - | chr3.3:14920635-14920654 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGGGAATTGTATT+CGG | - | chr3.3:14921210-14921229 | None:intergenic | 25.0% |
| CAACTTTCTAATCAATTTGC+AGG | + | chr3.3:14921531-14921550 | MS.gene057934:intron | 30.0% | |
| GATGAACAAAATGTAATTGC+GGG | + | chr3.3:14921118-14921137 | MS.gene057934:intron | 30.0% | |
| TAGGAACAAATGTTAGTGTT+CGG | + | chr3.3:14921056-14921075 | MS.gene057934:CDS | 30.0% | |
| TTATATGGACATATGTGTAC+AGG | + | chr3.3:14920211-14920230 | MS.gene057934:CDS | 30.0% | |
| TTTGGTTGAATGAAACCAAA+AGG | - | chr3.3:14920248-14920267 | None:intergenic | 30.0% | |
| ! | ATAATGGTTACACGTTTTCT+AGG | - | chr3.3:14920041-14920060 | None:intergenic | 30.0% |
| !! | TTAAGTTGGGAATTGTATTC+GGG | - | chr3.3:14921209-14921228 | None:intergenic | 30.0% |
| !!! | ACTTTCCACTCTTTTTTCAA+TGG | - | chr3.3:14920380-14920399 | None:intergenic | 30.0% |
| !!! | GAAGAACTTCATTTTTTGCT+TGG | + | chr3.3:14921300-14921319 | MS.gene057934:intron | 30.0% |
| !!! | TTTTGGTTTCATTCAACCAA+AGG | + | chr3.3:14920247-14920266 | MS.gene057934:CDS | 30.0% |
| AAAAAACGACCGATCAAACA+AGG | - | chr3.3:14919960-14919979 | None:intergenic | 35.0% | |
| AACTGTGTGTTTCTTGTTAC+AGG | + | chr3.3:14920447-14920466 | MS.gene057934:intron | 35.0% | |
| AGACTCTTAAACCAAGTGAA+AGG | - | chr3.3:14921702-14921721 | None:intergenic | 35.0% | |
| AGGAACAAATGTTAGTGTTC+GGG | + | chr3.3:14921057-14921076 | MS.gene057934:CDS | 35.0% | |
| AGTAACAAGCTCCTTAAAAC+CGG | - | chr3.3:14921928-14921947 | None:intergenic | 35.0% | |
| ATAGGATAGTGATTAGATGC+AGG | - | chr3.3:14921825-14921844 | None:intergenic | 35.0% | |
| ATCAAACAAGGATCAAGGAT+AGG | - | chr3.3:14919948-14919967 | None:intergenic | 35.0% | |
| ATGCACTTTCGTAACGAAAA+TGG | - | chr3.3:14921893-14921912 | None:intergenic | 35.0% | |
| CACTCTCCCTTTGAATTATA+TGG | + | chr3.3:14920196-14920215 | MS.gene057934:CDS | 35.0% | |
| GAGATTATGGATTCTGTTCT+TGG | + | chr3.3:14921435-14921454 | MS.gene057934:intron | 35.0% | |
| GGTGGAACTGAAACAAAAAT+CGG | - | chr3.3:14920079-14920098 | None:intergenic | 35.0% | |
| GTCAGCATCAGACTTAATAA+TGG | - | chr3.3:14920057-14920076 | None:intergenic | 35.0% | |
| GTGAAAGGATAACCTTCTAT+CGG | - | chr3.3:14921687-14921706 | None:intergenic | 35.0% | |
| GTGCTCTTGCTAATAATTTG+TGG | + | chr3.3:14921757-14921776 | MS.gene057934:intron | 35.0% | |
| GTTGTGGGAAATGATGTAAT+AGG | + | chr3.3:14921037-14921056 | MS.gene057934:CDS | 35.0% | |
| TAATTCAAAGGGAGAGTGAT+CGG | - | chr3.3:14920194-14920213 | None:intergenic | 35.0% | |
| TAGAAGGTTATCCTTTCACT+TGG | + | chr3.3:14921688-14921707 | MS.gene057934:intron | 35.0% | |
| TATTATGGCTATCCTAATGG+AGG | + | chr3.3:14921477-14921496 | MS.gene057934:intron | 35.0% | |
| TGAAAGGATAACCTTCTATC+GGG | - | chr3.3:14921686-14921705 | None:intergenic | 35.0% | |
| TGCTACTATTGAAACTCTAG+TGG | + | chr3.3:14921797-14921816 | MS.gene057934:intron | 35.0% | |
| TGGAAAGTTCGTGTTAACAA+TGG | + | chr3.3:14920392-14920411 | MS.gene057934:intron | 35.0% | |
| TTAGCACCAGTAAAAGTGAA+AGG | - | chr3.3:14920905-14920924 | None:intergenic | 35.0% | |
| TTCACTTGGTTTAAGAGTCT+TGG | + | chr3.3:14921702-14921721 | MS.gene057934:intron | 35.0% | |
| TTCTTCATCCACAAGAACTT+CGG | + | chr3.3:14920829-14920848 | MS.gene057934:CDS | 35.0% | |
| TTGACGGAGAAAATTCTAAG+CGG | - | chr3.3:14921514-14921533 | None:intergenic | 35.0% | |
| TTTGGCATAACATCAGGTAT+GGG | - | chr3.3:14920617-14920636 | None:intergenic | 35.0% | |
| ! | ATCCTTGATCCTTGTTTGAT+CGG | + | chr3.3:14919948-14919967 | MS.gene057934:CDS | 35.0% |
| ! | GCTACTAAACTCATTTTCCT+TGG | - | chr3.3:14921162-14921181 | None:intergenic | 35.0% |
| !! | ATTTTCGTTACGAAAGTGCA+TGG | + | chr3.3:14921892-14921911 | MS.gene057934:intron | 35.0% |
| !! | TATTCTTGATGATGCTGGTT+CGG | + | chr3.3:14920949-14920968 | MS.gene057934:CDS | 35.0% |
| !!! | GGAGAGCATTTTAACAAGAT+AGG | - | chr3.3:14921843-14921862 | None:intergenic | 35.0% |
| !!! | TTCCACTCTTTTTTCAATGG+TGG | - | chr3.3:14920377-14920396 | None:intergenic | 35.0% |
| !!! | TTGTTTGATCGGTCGTTTTT+TGG | + | chr3.3:14919959-14919978 | MS.gene057934:CDS | 35.0% |
| !!! | TTTTGGTTTGGCATAACATC+AGG | - | chr3.3:14920623-14920642 | None:intergenic | 35.0% |
| AACAAATGTTAGTGTTCGGG+GGG | + | chr3.3:14921060-14921079 | MS.gene057934:CDS | 40.0% | |
| ACAATTGCACAACACATGGT+TGG | + | chr3.3:14922073-14922092 | MS.gene057934:intron | 40.0% | |
| ATCAAGGATAGGAGAGGTTT+CGG | - | chr3.3:14919937-14919956 | None:intergenic | 40.0% | |
| ATTCAACCAAAGGTAGCTCA+AGG | + | chr3.3:14920257-14920276 | MS.gene057934:CDS | 40.0% | |
| CCAACTTAAAGTTCCTAGTC+CGG | + | chr3.3:14921220-14921239 | MS.gene057934:intron | 40.0% | |
| CCACACTTTAAGTCACATGT+AGG | - | chr3.3:14920342-14920361 | None:intergenic | 40.0% | |
| CCTACATGTGACTTAAAGTG+TGG | + | chr3.3:14920339-14920358 | MS.gene057934:intron | 40.0% | |
| CTAATCAATTTGCAGGTTCG+TGG | + | chr3.3:14921538-14921557 | MS.gene057934:intron | 40.0% | |
| CTCCACCATTGAAAAAAGAG+TGG | + | chr3.3:14920372-14920391 | MS.gene057934:intron | 40.0% | |
| CTGAATCAATAACCGCTTGA+CGG | - | chr3.3:14921650-14921669 | None:intergenic | 40.0% | |
| GAACAAATGTTAGTGTTCGG+GGG | + | chr3.3:14921059-14921078 | MS.gene057934:CDS | 40.0% | |
| GAAGTTCTTGTGGATGAAGA+AGG | - | chr3.3:14920830-14920849 | None:intergenic | 40.0% | |
| GACATATGTGTACAGGTTCA+TGG | + | chr3.3:14920218-14920237 | MS.gene057934:CDS | 40.0% | |
| GAGTCCAATTCGAACAAGTT+AGG | - | chr3.3:14920506-14920525 | None:intergenic | 40.0% | |
| GGAAAATGAGTTTAGTAGCG+TGG | + | chr3.3:14921163-14921182 | MS.gene057934:intron | 40.0% | |
| GGAACAAATGTTAGTGTTCG+GGG | + | chr3.3:14921058-14921077 | MS.gene057934:CDS | 40.0% | |
| GGCTATTATGGCTATCCTAA+TGG | + | chr3.3:14921474-14921493 | MS.gene057934:intron | 40.0% | |
| GTAACAAGCTCCTTAAAACC+GGG | - | chr3.3:14921927-14921946 | None:intergenic | 40.0% | |
| GTAGACAATTGCACAACACA+TGG | + | chr3.3:14922069-14922088 | MS.gene057934:intron | 40.0% | |
| GTTTAGTAGCGTGGAATTGT+CGG | + | chr3.3:14921172-14921191 | MS.gene057934:intron | 40.0% | |
| GTTTGGCATAACATCAGGTA+TGG | - | chr3.3:14920618-14920637 | None:intergenic | 40.0% | |
| TAGAAGACATGTCTGTTTGG+CGG | + | chr3.3:14922003-14922022 | MS.gene057934:intron | 40.0% | |
| TCACATGTAGGAACTGTGAA+TGG | - | chr3.3:14920330-14920349 | None:intergenic | 40.0% | |
| TGGATTCTGTTCTTGGTACT+TGG | + | chr3.3:14921442-14921461 | MS.gene057934:intron | 40.0% | |
| TGTGTTTCTTGTTACAGGTG+TGG | + | chr3.3:14920452-14920471 | MS.gene057934:intron | 40.0% | |
| TTCGAATTGGACTCAGATGA+TGG | + | chr3.3:14920512-14920531 | MS.gene057934:CDS | 40.0% | |
| TTCTTGTGGATGAAGAAGGA+AGG | - | chr3.3:14920826-14920845 | None:intergenic | 40.0% | |
| TTGGCATAACATCAGGTATG+GGG | - | chr3.3:14920616-14920635 | None:intergenic | 40.0% | |
| TTTAGTAGCGTGGAATTGTC+GGG | + | chr3.3:14921173-14921192 | MS.gene057934:intron | 40.0% | |
| ! | AGGAACTGTGAATGGTGTTA+TGG | - | chr3.3:14920322-14920341 | None:intergenic | 40.0% |
| ! | CGGACTAGGAACTTTAAGTT+GGG | - | chr3.3:14921222-14921241 | None:intergenic | 40.0% |
| ! | GCAATTAGAACCCGGTTTTA+AGG | + | chr3.3:14921914-14921933 | MS.gene057934:intron | 40.0% |
| ! | GTTTTCTAGGTTTCCAAGCA+CGG | - | chr3.3:14920028-14920047 | None:intergenic | 40.0% |
| ! | TGGAGAATGACTGGCTATTA+TGG | + | chr3.3:14921462-14921481 | MS.gene057934:intron | 40.0% |
| ! | TTTTCTAGGTTTCCAAGCAC+GGG | - | chr3.3:14920027-14920046 | None:intergenic | 40.0% |
| !! | CAAGGCATCATCAGTTTTCT+TGG | + | chr3.3:14920275-14920294 | MS.gene057934:CDS | 40.0% |
| !! | CACAACAGAAGCATCAATAG+TGG | - | chr3.3:14920678-14920697 | None:intergenic | 40.0% |
| !! | CAGAAGCATCAATAGTGGTT+CGG | - | chr3.3:14920673-14920692 | None:intergenic | 40.0% |
| !! | GATGGTATTCTTGATGATGC+TGG | + | chr3.3:14920944-14920963 | MS.gene057934:CDS | 40.0% |
| !! | GTGTCCTAACTTGTTCGAAT+TGG | + | chr3.3:14920499-14920518 | MS.gene057934:CDS | 40.0% |
| AAAGATCCGGATTGAAGAGC+CGG | - | chr3.3:14921242-14921261 | None:intergenic | 45.0% | |
| AAATGGCGTGTATGATGCTG+AGG | - | chr3.3:14921876-14921895 | None:intergenic | 45.0% | |
| ACAAGGATCAAGGATAGGAG+AGG | - | chr3.3:14919943-14919962 | None:intergenic | 45.0% | |
| AGAATACCATCACCTTCGCT+TGG | - | chr3.3:14920935-14920954 | None:intergenic | 45.0% | |
| AGTGCATGGCAATTAGAACC+CGG | + | chr3.3:14921906-14921925 | MS.gene057934:intron | 45.0% | |
| ATGATGCCTTGAGCTACCTT+TGG | - | chr3.3:14920266-14920285 | None:intergenic | 45.0% | |
| ATGCAAGCAAAACACGACAC+AGG | + | chr3.3:14920776-14920795 | MS.gene057934:CDS | 45.0% | |
| CAAGCACAATAGAATGACCC+TGG | - | chr3.3:14920868-14920887 | None:intergenic | 45.0% | |
| CAGGGTCATTCTATTGTGCT+TGG | + | chr3.3:14920866-14920885 | MS.gene057934:CDS | 45.0% | |
| CATTCTCAGACATTCGGACA+AGG | + | chr3.3:14920475-14920494 | MS.gene057934:CDS | 45.0% | |
| CCTAGATGCAAGTGAGAAGA+GGG | + | chr3.3:14921587-14921606 | MS.gene057934:intron | 45.0% | |
| CTAGATGCAAGTGAGAAGAG+GGG | + | chr3.3:14921588-14921607 | MS.gene057934:intron | 45.0% | |
| CTTGGTACTTGGAGAATGAC+TGG | + | chr3.3:14921453-14921472 | MS.gene057934:intron | 45.0% | |
| GACCGATCAAACAAGGATCA+AGG | - | chr3.3:14919953-14919972 | None:intergenic | 45.0% | |
| GCGTAGAAGACATGTCTGTT+TGG | + | chr3.3:14922000-14922019 | MS.gene057934:intron | 45.0% | |
| GGACATGCGTTCACTGAAAT+AGG | - | chr3.3:14920006-14920025 | None:intergenic | 45.0% | |
| GGACTCACTTTGGATGATGA+GGG | + | chr3.3:14919885-14919904 | MS.gene057934:CDS | 45.0% | |
| GGTTTCAGCGGTTAGGTTAA+GGG | - | chr3.3:14919916-14919935 | None:intergenic | 45.0% | |
| GTGTGGCATTCTCAGACATT+CGG | + | chr3.3:14920469-14920488 | MS.gene057934:CDS | 45.0% | |
| TAGATGCAAGTGAGAAGAGG+GGG | + | chr3.3:14921589-14921608 | MS.gene057934:intron | 45.0% | |
| TCCTAGATGCAAGTGAGAAG+AGG | + | chr3.3:14921586-14921605 | MS.gene057934:intron | 45.0% | |
| TCTACGCACGAAGACAACTT+CGG | - | chr3.3:14921987-14922006 | None:intergenic | 45.0% | |
| TGGACTCACTTTGGATGATG+AGG | + | chr3.3:14919884-14919903 | MS.gene057934:CDS | 45.0% | |
| TGTTATGGCCATCGTAGGTT+TGG | - | chr3.3:14920307-14920326 | None:intergenic | 45.0% | |
| TTAGTAGCGTGGAATTGTCG+GGG | + | chr3.3:14921174-14921193 | MS.gene057934:intron | 45.0% | |
| TTGTCAGATCTCCCGATAGA+AGG | + | chr3.3:14921672-14921691 | MS.gene057934:intron | 45.0% | |
| ! | AACACATGGTTGGTGTCTTC+AGG | + | chr3.3:14922083-14922102 | MS.gene057934:intron | 45.0% |
| ! | ATGAGAAGAGTACACCTTCC+AGG | - | chr3.3:14921955-14921974 | None:intergenic | 45.0% |
| ! | CCGGACTAGGAACTTTAAGT+TGG | - | chr3.3:14921223-14921242 | None:intergenic | 45.0% |
| ! | GAGCAACATCTAGTTTGTGG+TGG | - | chr3.3:14920097-14920116 | None:intergenic | 45.0% |
| ! | GCTTGTTACTAACTCCTGGA+AGG | + | chr3.3:14921938-14921957 | MS.gene057934:intron | 45.0% |
| ! | TAACGTCGATGGACTCACTT+TGG | + | chr3.3:14919875-14919894 | MS.gene057934:CDS | 45.0% |
| ! | TATTGTGCTTGGTCTTCCTG+CGG | + | chr3.3:14920877-14920896 | MS.gene057934:CDS | 45.0% |
| ! | TGCGAGCAACATCTAGTTTG+TGG | - | chr3.3:14920100-14920119 | None:intergenic | 45.0% |
| ! | TTTCAAGCTGGTTCTTCTGC+TGG | + | chr3.3:14920647-14920666 | MS.gene057934:CDS | 45.0% |
| !! | AATGGTGTTATGGCCATCGT+AGG | - | chr3.3:14920312-14920331 | None:intergenic | 45.0% |
| !! | AGGAGCTTGTTACTAACTCC+TGG | + | chr3.3:14921934-14921953 | MS.gene057934:intron | 45.0% |
| !! | CGTCAAGCGGTTATTGATTC+AGG | + | chr3.3:14921648-14921667 | MS.gene057934:intron | 45.0% |
| AAACACGACACAGGTGGTGT+TGG | + | chr3.3:14920785-14920804 | MS.gene057934:CDS | 50.0% | |
| AAGCCTGTCACGACACGTAT+AGG | + | chr3.3:14920560-14920579 | MS.gene057934:CDS | 50.0% | |
| AATTGCGGGTCCTGATGATC+AGG | + | chr3.3:14921132-14921151 | MS.gene057934:intron | 50.0% | |
| AGAGTGATCGGAACAACACC+TGG | - | chr3.3:14920182-14920201 | None:intergenic | 50.0% | |
| AGCCTGTCACGACACGTATA+GGG | + | chr3.3:14920561-14920580 | MS.gene057934:CDS | 50.0% | |
| AGGAGAGGTTTCGGTTTCAG+CGG | - | chr3.3:14919928-14919947 | None:intergenic | 50.0% | |
| AGGTTTCGGTTTCAGCGGTT+AGG | - | chr3.3:14919923-14919942 | None:intergenic | 50.0% | |
| AGTCCTCCTTTGCTGCTGTT+GGG | + | chr3.3:14921014-14921033 | MS.gene057934:CDS | 50.0% | |
| ATACCATCACCTTCGCTTGG+AGG | - | chr3.3:14920932-14920951 | None:intergenic | 50.0% | |
| ATAGCCAGGGACCATCATCA+AGG | - | chr3.3:14920124-14920143 | None:intergenic | 50.0% | |
| ATGACCCTGGTGCAAGTTTG+AGG | - | chr3.3:14920855-14920874 | None:intergenic | 50.0% | |
| CAAGCAAAACACGACACAGG+TGG | + | chr3.3:14920779-14920798 | MS.gene057934:CDS | 50.0% | |
| CCCTCTTCTCACTTGCATCT+AGG | - | chr3.3:14921590-14921609 | None:intergenic | 50.0% | |
| CGGTTTCAGCGGTTAGGTTA+AGG | - | chr3.3:14919917-14919936 | None:intergenic | 50.0% | |
| GCAGTTCTACGACCTCCATT+AGG | - | chr3.3:14921492-14921511 | None:intergenic | 50.0% | |
| GCATAGCAGTTTGAGCAGCA+AGG | - | chr3.3:14920760-14920779 | None:intergenic | 50.0% | |
| GCTAAACATCCTCCAAGCGA+AGG | + | chr3.3:14920920-14920939 | MS.gene057934:CDS | 50.0% | |
| GTAAAAGTGAAAGGAGCCGC+AGG | - | chr3.3:14920896-14920915 | None:intergenic | 50.0% | |
| GTTGCTCGCATCCTTGATGA+TGG | + | chr3.3:14920110-14920129 | MS.gene057934:CDS | 50.0% | |
| TATCCATGGCTTCCGTCAAG+CGG | + | chr3.3:14921635-14921654 | MS.gene057934:intron | 50.0% | |
| TATGGCCATCGTAGGTTTGG+AGG | - | chr3.3:14920304-14920323 | None:intergenic | 50.0% | |
| TGTCACGACACGTATAGGGT+CGG | + | chr3.3:14920565-14920584 | MS.gene057934:CDS | 50.0% | |
| TGTCTTCATGTAGACCGCAC+CGG | + | chr3.3:14921330-14921349 | MS.gene057934:intron | 50.0% | |
| TTCCACCAACAAGTGGTTGC+AGG | + | chr3.3:14920589-14920608 | MS.gene057934:CDS | 50.0% | |
| TTTGCTGCTGTTGGGGTTGT+GGG | + | chr3.3:14921022-14921041 | MS.gene057934:CDS | 50.0% | |
| ! | AGATGATGGTGTGCGCAACT+GGG | + | chr3.3:14920526-14920545 | MS.gene057934:CDS | 50.0% |
| ! | ATGGTTGGTGTCTTCAGGTG+AGG | + | chr3.3:14922088-14922107 | MS.gene057934:intron | 50.0% |
| ! | CAGGTTCATGGTCTGCCTTT+TGG | + | chr3.3:14920230-14920249 | MS.gene057934:CDS | 50.0% |
| ! | CCATCGACGTTAAGTTGCGT+GGG | - | chr3.3:14919867-14919886 | None:intergenic | 50.0% |
| ! | GCAGGTTCGTGGTGCATTTT+TGG | + | chr3.3:14921549-14921568 | MS.gene057934:intron | 50.0% |
| ! | GTTTGAGGCCGAAGTTCTTG+TGG | - | chr3.3:14920840-14920859 | None:intergenic | 50.0% |
| ! | TCCATCGACGTTAAGTTGCG+TGG | - | chr3.3:14919868-14919887 | None:intergenic | 50.0% |
| !! | GCGGCTCCTTTCACTTTTAC+TGG | + | chr3.3:14920896-14920915 | MS.gene057934:CDS | 50.0% |
| AACCCCAACAGCAGCAAAGG+AGG | - | chr3.3:14921020-14921039 | None:intergenic | 55.0% | |
| AACCTTTCCTCCACCGCTCA+TGG | - | chr3.3:14921732-14921751 | None:intergenic | 55.0% | |
| AGACTGCGGTGGCTTATCCA+TGG | + | chr3.3:14921621-14921640 | MS.gene057934:intron | 55.0% | |
| CACAACCCCAACAGCAGCAA+AGG | - | chr3.3:14921023-14921042 | None:intergenic | 55.0% | |
| CATCCTCCAAGCGAAGGTGA+TGG | + | chr3.3:14920926-14920945 | MS.gene057934:CDS | 55.0% | |
| CCCACGCAACTTAACGTCGA+TGG | + | chr3.3:14919864-14919883 | MS.gene057934:CDS | 55.0% | |
| CCTAGTCCGGCTCTTCAATC+CGG | + | chr3.3:14921233-14921252 | MS.gene057934:intron | 55.0% | |
| CCTGATGATCAGGTCTGCCA+AGG | + | chr3.3:14921142-14921161 | MS.gene057934:intron | 55.0% | |
| CCTTGGCAGACCTGATCATC+AGG | - | chr3.3:14921145-14921164 | None:intergenic | 55.0% | |
| CGTGTATGATGCTGAGGCAG+AGG | - | chr3.3:14921870-14921889 | None:intergenic | 55.0% | |
| CTTTGCTGCTGTTGGGGTTG+TGG | + | chr3.3:14921021-14921040 | MS.gene057934:CDS | 55.0% | |
| GACCCTATACGTGTCGTGAC+AGG | - | chr3.3:14920566-14920585 | None:intergenic | 55.0% | |
| GAGTCCTCCTTTGCTGCTGT+TGG | + | chr3.3:14921013-14921032 | MS.gene057934:CDS | 55.0% | |
| GAGTCTTGGTACGCCATGAG+CGG | + | chr3.3:14921716-14921735 | MS.gene057934:intron | 55.0% | |
| GCGGGGGTCTTGCTTTAGTT+TGG | + | chr3.3:14921358-14921377 | MS.gene057934:intron | 55.0% | |
| GGATAAGCCACCGCAGTCTA+CGG | - | chr3.3:14921620-14921639 | None:intergenic | 55.0% | |
| GGTGTCCTCCAAACCTACGA+TGG | + | chr3.3:14920296-14920315 | MS.gene057934:CDS | 55.0% | |
| GTCATGGAACGCATTGCTCC+AGG | + | chr3.3:14920161-14920180 | MS.gene057934:CDS | 55.0% | |
| GTCCTCCTTTGCTGCTGTTG+GGG | + | chr3.3:14921015-14921034 | MS.gene057934:CDS | 55.0% | |
| TAACCGCTTGACGGAAGCCA+TGG | - | chr3.3:14921641-14921660 | None:intergenic | 55.0% | |
| TCGGCCTCAAACTTGCACCA+GGG | + | chr3.3:14920848-14920867 | MS.gene057934:CDS | 55.0% | |
| TTCGGCCTCAAACTTGCACC+AGG | + | chr3.3:14920847-14920866 | MS.gene057934:CDS | 55.0% | |
| ! | CAGATGATGGTGTGCGCAAC+TGG | + | chr3.3:14920525-14920544 | MS.gene057934:CDS | 55.0% |
| ! | GATGATGGTGTGCGCAACTG+GGG | + | chr3.3:14920527-14920546 | MS.gene057934:CDS | 55.0% |
| ! | GTCCTGCAACCACTTGTTGG+TGG | - | chr3.3:14920594-14920613 | None:intergenic | 55.0% |
| ! | TGATGCTGAGGCAGAGGTGT+AGG | - | chr3.3:14921864-14921883 | None:intergenic | 55.0% |
| !! | GCATCCTTGATGATGGTCCC+TGG | + | chr3.3:14920117-14920136 | MS.gene057934:CDS | 55.0% |
| AGCGTGGAATTGTCGGGGTG+TGG | + | chr3.3:14921179-14921198 | MS.gene057934:intron | 60.0% | |
| CCGGATTGAAGAGCCGGACT+AGG | - | chr3.3:14921236-14921255 | None:intergenic | 60.0% | |
| GGGGTCCTGCAACCACTTGT+TGG | - | chr3.3:14920597-14920616 | None:intergenic | 60.0% | |
| GTGAACGCATGTCCCGTGCT+TGG | + | chr3.3:14920012-14920031 | MS.gene057934:CDS | 60.0% | |
| TCTTGGTACGCCATGAGCGG+TGG | + | chr3.3:14921719-14921738 | MS.gene057934:intron | 60.0% | |
| ! | CATGTAGACCGCACCGGTAG+AGG | + | chr3.3:14921336-14921355 | MS.gene057934:intron | 60.0% |
| ! | GGTCGGCTTCCACCAACAAG+TGG | + | chr3.3:14920582-14920601 | MS.gene057934:CDS | 60.0% |
| AGCAAGACCCCCGCCTCTAC+CGG | - | chr3.3:14921352-14921371 | None:intergenic | 65.0% | |
| CGCCATGAGCGGTGGAGGAA+AGG | + | chr3.3:14921727-14921746 | MS.gene057934:intron | 65.0% | |
| CGCGTGCTCGCGCTTCAGAA+TGG | + | chr3.3:14920989-14921008 | MS.gene057934:CDS | 65.0% | |
| TGGTACGCCATGAGCGGTGG+AGG | + | chr3.3:14921722-14921741 | MS.gene057934:intron | 65.0% | |
| ! | GTAGACCGCACCGGTAGAGG+CGG | + | chr3.3:14921339-14921358 | MS.gene057934:intron | 65.0% |
| ! | TAGACCGCACCGGTAGAGGC+GGG | + | chr3.3:14921340-14921359 | MS.gene057934:intron | 65.0% |
| GGCACAGCCGTAGACTGCGG+TGG | + | chr3.3:14921610-14921629 | MS.gene057934:intron | 70.0% | |
| ! | AGACCGCACCGGTAGAGGCG+GGG | + | chr3.3:14921341-14921360 | MS.gene057934:intron | 70.0% |
| ! | GGGGGCACAGCCGTAGACTG+CGG | + | chr3.3:14921607-14921626 | MS.gene057934:intron | 70.0% |
| GACCCCCGCCTCTACCGGTG+CGG | - | chr3.3:14921347-14921366 | None:intergenic | 75.0% | |
| ! | GACCGCACCGGTAGAGGCGG+GGG | + | chr3.3:14921342-14921361 | MS.gene057934:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 14919858 | 14922125 | 14919858 | ID=MS.gene057934 |
| chr3.3 | mRNA | 14919858 | 14922125 | 14919858 | ID=MS.gene057934.t1;Parent=MS.gene057934 |
| chr3.3 | exon | 14919858 | 14920345 | 14919858 | ID=MS.gene057934.t1.exon1;Parent=MS.gene057934.t1 |
| chr3.3 | CDS | 14919858 | 14920345 | 14919858 | ID=cds.MS.gene057934.t1;Parent=MS.gene057934.t1 |
| chr3.3 | exon | 14920469 | 14921096 | 14920469 | ID=MS.gene057934.t1.exon2;Parent=MS.gene057934.t1 |
| chr3.3 | CDS | 14920469 | 14921096 | 14920469 | ID=cds.MS.gene057934.t1;Parent=MS.gene057934.t1 |
| chr3.3 | exon | 14922105 | 14922125 | 14922105 | ID=MS.gene057934.t1.exon3;Parent=MS.gene057934.t1 |
| chr3.3 | CDS | 14922105 | 14922125 | 14922105 | ID=cds.MS.gene057934.t1;Parent=MS.gene057934.t1 |
| Gene Sequence |
| Protein sequence |
