AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028716


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028716.t1 MTR_3g053920 52.601 346 97 4 1 345 1 280 7.25e-110 327
MS.gene028716.t1 MTR_2g061500 74.419 129 33 0 1 129 1 129 8.28e-66 209
MS.gene028716.t1 MTR_4g103530 76.289 97 23 0 55 151 1 97 2.40e-48 165
MS.gene028716.t1 MTR_7g011710 77.647 85 19 0 55 139 1 85 1.19e-41 146
MS.gene028716.t1 MTR_6g033215 36.041 197 119 3 5 199 103 294 1.87e-36 137
MS.gene028716.t1 MTR_8g463110 70.370 81 24 0 407 487 244 324 2.40e-32 131
MS.gene028716.t1 MTR_8g463110 56.198 121 44 3 289 407 1 114 1.84e-22 101
MS.gene028716.t1 MTR_0010s0370 36.571 175 105 5 8 177 4 177 4.66e-30 116
MS.gene028716.t1 MTR_0010s0350 36.571 175 105 5 8 177 4 177 4.66e-30 116
MS.gene028716.t1 MTR_4g020630 57.895 76 32 0 412 487 185 260 6.19e-22 99.0
MS.gene028716.t1 MTR_7g063500 43.158 95 53 1 394 487 8 102 1.65e-19 84.7
MS.gene028716.t1 MTR_6g034215 58.333 72 30 0 412 483 253 324 3.33e-19 89.0
MS.gene028716.t1 MTR_7g056813 58.462 65 25 1 423 487 8 70 3.53e-16 80.5
MS.gene028716.t1 MTR_3g044860 53.571 56 26 0 423 478 126 181 2.27e-13 71.2
MS.gene028716.t1 MTR_1g036720 32.692 104 68 1 11 112 7 110 2.63e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028716.t1 AT2G17920 27.027 185 127 4 36 216 39 219 4.40e-17 82.4
MS.gene028716.t1 AT2G41590 26.344 186 129 3 35 216 38 219 8.19e-16 79.3
MS.gene028716.t1 AT5G36228 25.888 197 139 3 36 227 39 233 1.34e-15 78.6
MS.gene028716.t1 AT3G57587 25.137 183 133 2 36 216 39 219 1.49e-14 75.5
MS.gene028716.t1 AT3G31430 27.568 185 122 5 36 215 134 311 2.48e-14 74.7
MS.gene028716.t1 AT2G02103 25.946 185 129 3 36 216 39 219 4.14e-14 74.3
MS.gene028716.t1 AT5G18636 25.405 185 130 3 36 216 39 219 4.26e-14 74.3
MS.gene028716.t1 AT5G25200 25.405 185 130 3 36 216 39 219 4.30e-14 74.3
MS.gene028716.t1 AT2G13450 26.486 185 126 5 36 215 39 218 1.52e-13 72.8
MS.gene028716.t1 AT3G47920 25.676 148 106 2 71 216 3 148 1.58e-12 68.6

Find 141 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGATGCTGCTCGCATTT+TGG 0.160961 2.1:+8887251 MS.gene028716:CDS
CAACATTGATGGTCTCATTT+TGG 0.181790 2.1:+8887023 MS.gene028716:CDS
CCGATGACGGTGTGCGCAAC+TGG 0.182509 2.1:+8887673 MS.gene028716:CDS
CTCTGAATCATCTGGACATT+TGG 0.208576 2.1:+8887352 MS.gene028716:CDS
CAAGGAATTGGAAGCTTTCT+TGG 0.235486 2.1:+8887423 MS.gene028716:CDS
GTATGTTTGAATTGCGAAAA+AGG 0.248851 2.1:+8889280 MS.gene028716:CDS
TGTTACAGGTGTGGCATTCT+TGG 0.257369 2.1:+8887609 MS.gene028716:CDS
AAACAAGGTGTGACGGGTTC+TGG 0.272681 2.1:+8887942 MS.gene028716:CDS
TTCCTGCCTTCCCCATCTTC+TGG 0.278072 2.1:+8887978 MS.gene028716:CDS
GTGCAGATTGGAACACATTT+TGG 0.280181 2.1:-8887785 None:intergenic
CTGTTTGATTGGCCGCGTTT+TGG 0.292559 2.1:+8887107 MS.gene028716:CDS
TATGTCAAGATGATGCTTAT+TGG 0.298442 2.1:+8889316 MS.gene028716:CDS
TTTGTTTAAATATGAGAAAT+TGG 0.299208 2.1:+8887578 MS.gene028716:CDS
CTTTGCTGCTGATGGGACTT+TGG 0.300322 2.1:+8888178 MS.gene028716:CDS
TTTGCTGCTGATGGGACTTT+GGG 0.306368 2.1:+8888179 MS.gene028716:CDS
TGTCACTGCGCCTTTGAAAA+AGG 0.312303 2.1:+8887515 MS.gene028716:CDS
AACACTGCTGCTGTTCCTGC+TGG 0.313186 2.1:+8887822 MS.gene028716:CDS
CCAATTCCTTGACCAACCTT+TGG 0.317754 2.1:-8887411 None:intergenic
ACTTCTGCCTTTGCTGCTGA+TGG 0.322065 2.1:+8888170 MS.gene028716:CDS
CAGGTCCATGGTTTGCCTTT+CGG 0.331162 2.1:+8887378 MS.gene028716:CDS
CCAAAGGTTGGTCAAGGAAT+TGG 0.333096 2.1:+8887411 MS.gene028716:CDS
TCTGAATCATCTGGACATTT+GGG 0.336625 2.1:+8887353 MS.gene028716:CDS
CGGTATCAGCAGCTAGGTTA+AGG 0.343397 2.1:-8887062 None:intergenic
CATCAAGTTTGTGATGGAAT+TGG 0.349530 2.1:-8887236 None:intergenic
GCAGCAGTGTTGCGGCCAGC+AGG 0.356952 2.1:-8887810 None:intergenic
TGCTCTTCTTGCTATTAAAC+AGG 0.365904 2.1:+8887887 MS.gene028716:CDS
CTCGGCCTCTAACATGCTGC+AGG 0.375278 2.1:+8888004 MS.gene028716:CDS
CAGGGGCGTTCACTGGTGCT+TGG 0.385485 2.1:+8888023 MS.gene028716:CDS
ATCCTTGAACACTGTTTGAT+TGG 0.388429 2.1:+8887096 MS.gene028716:CDS
AAGCCTGTTTCAATGCGTAT+AGG 0.388670 2.1:+8887708 MS.gene028716:CDS
CTCGGCAAAGCATCAGGTAT+AGG 0.390834 2.1:-8887762 None:intergenic
ACGCCCCTGCAGCATGTTAG+AGG 0.394577 2.1:-8888009 None:intergenic
ACTTTGGGAAATGATGTAAT+AGG 0.395176 2.1:+8888194 MS.gene028716:CDS
CGATGACGGTGTGCGCAACT+GGG 0.395807 2.1:+8887674 MS.gene028716:CDS
GCAATTCAAACATACGAATC+TGG 0.401253 2.1:-8889272 None:intergenic
TTTGCCTGGTTTCCATGCTC+TGG 0.404372 2.1:-8887172 None:intergenic
TGATTCAGAGGGACAGTGAC+TGG 0.415215 2.1:-8887339 None:intergenic
CACTGTCCCTCTGAATCATC+TGG 0.418295 2.1:+8887344 MS.gene028716:CDS
TGCTGCTCAAACAGCGGTGC+AGG 0.418746 2.1:+8887917 MS.gene028716:CDS
GACATTTGGGTGCAGGTCCA+TGG 0.425964 2.1:+8887366 MS.gene028716:CDS
TGATAACTTTCATATAGTTA+TGG 0.426309 2.1:+8887293 MS.gene028716:CDS
CGCCCGCTTGCCTTTCAGAA+TGG 0.427668 2.1:+8888146 MS.gene028716:CDS
TCGGCAAAGCATCAGGTATA+GGG 0.430724 2.1:-8887761 None:intergenic
ATTGAAACAGGCTTGAGATC+AGG 0.431785 2.1:-8887699 None:intergenic
GTGTCCGGATTTGTTCGAAT+TGG 0.434178 2.1:+8887647 MS.gene028716:CDS
CCCACGAACCTCAACATTGA+TGG 0.439264 2.1:+8887012 MS.gene028716:CDS
TTCCAATCTGCACAGCCTGC+TGG 0.440262 2.1:+8887795 MS.gene028716:CDS
GTGTGGCATTCTTGGTCATT+CGG 0.441108 2.1:+8887617 MS.gene028716:CDS
CACCAGAAGATGGGGAAGGC+AGG 0.447556 2.1:-8887980 None:intergenic
GACCCTATACGCATTGAAAC+AGG 0.452419 2.1:-8887711 None:intergenic
CTTCTGCCTTTGCTGCTGAT+GGG 0.458119 2.1:+8888171 MS.gene028716:CDS
TTCTCTCAAGGTGACGGTAA+TGG 0.458348 2.1:+8888083 MS.gene028716:CDS
CTGCAGCATGTTAGAGGCCG+AGG 0.461817 2.1:-8888003 None:intergenic
CATGCTGCAGGGGCGTTCAC+TGG 0.463024 2.1:+8888016 MS.gene028716:CDS
TTCCCCATCTTCTGGTGCCT+CGG 0.463976 2.1:+8887986 MS.gene028716:CDS
TTGTTTAAATATGAGAAATT+GGG 0.471358 2.1:+8887579 MS.gene028716:CDS
TCATTCGGACAAGGTGTGTC+CGG 0.473062 2.1:+8887632 MS.gene028716:CDS
ACCATCAATGTTGAGGTTCG+TGG 0.482688 2.1:-8887013 None:intergenic
ACAATACCAGTAGCATTGTA+AGG 0.485262 2.1:-8888059 None:intergenic
AGCAGCTTTGATTTCTCGAT+CGG 0.488916 2.1:-8887130 None:intergenic
GGTCGGCTGCTAACAACAAA+TGG 0.492153 2.1:+8887730 MS.gene028716:CDS
GGCCAGCAGGCTGTGCAGAT+TGG 0.493207 2.1:-8887797 None:intergenic
GTAGCATTGTAAGGCACAGC+AGG 0.495456 2.1:-8888050 None:intergenic
TCAACTTAAAATTGACATTG+AGG 0.495958 2.1:+8889200 MS.gene028716:CDS
GGCCAATCAAACAGTGTTCA+AGG 0.499372 2.1:-8887098 None:intergenic
CCAGTTGCGCACACCGTCAT+CGG 0.502662 2.1:-8887673 None:intergenic
TACTAATGATGATGCTGGTT+CGG 0.503266 2.1:+8888106 MS.gene028716:CDS
ATGATGGTCACACGTTTGCC+TGG 0.503620 2.1:-8887186 None:intergenic
GGTATCAGCAGCTAGGTTAA+GGG 0.503804 2.1:-8887061 None:intergenic
AGCCTGTTTCAATGCGTATA+GGG 0.504605 2.1:+8887709 MS.gene028716:CDS
CATAAGAACCATTGTTTGCA+CGG 0.505572 2.1:-8887548 None:intergenic
TTCGAATTGGACTCCGATGA+CGG 0.506766 2.1:+8887660 MS.gene028716:CDS
GAGGCCGAGGCACCAGAAGA+TGG 0.507599 2.1:-8887990 None:intergenic
GAGTCCAATTCGAACAAATC+CGG 0.508451 2.1:-8887651 None:intergenic
TCATCTGGACATTTGGGTGC+AGG 0.508811 2.1:+8887359 MS.gene028716:CDS
TCAAACAGTGTTCAAGGATG+GGG 0.514915 2.1:-8887092 None:intergenic
AGGCCGAGGCACCAGAAGAT+GGG 0.517665 2.1:-8887989 None:intergenic
ATCAAACAGTGTTCAAGGAT+GGG 0.518010 2.1:-8887093 None:intergenic
GGATTTATTCAACCAAAGGT+TGG 0.518531 2.1:+8887399 MS.gene028716:CDS
CAGTTACATAATACACGGCT+AGG 0.523020 2.1:+8889234 MS.gene028716:CDS
CAGGCAAAACAAGGTGTGAC+GGG 0.523916 2.1:+8887936 MS.gene028716:CDS
TGCCATTCTGAAAGGCAAGC+GGG 0.524979 2.1:-8888148 None:intergenic
GTTATGGCCCGTATTGCTCC+TGG 0.524981 2.1:+8887309 MS.gene028716:CDS
GCTGTGCCTTACAATGCTAC+TGG 0.526124 2.1:+8888053 MS.gene028716:CDS
GGACAACACCAGGAGCAATA+CGG 0.527892 2.1:-8887317 None:intergenic
ATTCAACCAAAGGTTGGTCA+AGG 0.529775 2.1:+8887405 MS.gene028716:CDS
GACAACACCAGGAGCAATAC+GGG 0.529788 2.1:-8887316 None:intergenic
CATTCTTGGTCATTCGGACA+AGG 0.529981 2.1:+8887623 MS.gene028716:CDS
AATACACGGCTAGGGCACTC+AGG 0.531156 2.1:+8889243 MS.gene028716:CDS
ATGGCCAGAGCATGGAAACC+AGG 0.532911 2.1:+8887168 MS.gene028716:CDS
TGCTTACTTCATTGAACGCA+TGG 0.534408 2.1:+8887149 MS.gene028716:CDS
TCGGCCTCTAACATGCTGCA+GGG 0.534466 2.1:+8888005 MS.gene028716:CDS
TTTCGGATTTATTCAACCAA+AGG 0.535194 2.1:+8887395 MS.gene028716:CDS
AATCAAACAGTGTTCAAGGA+TGG 0.538776 2.1:-8887094 None:intergenic
CAAAGTCCCATCAGCAGCAA+AGG 0.539502 2.1:-8888177 None:intergenic
TGCTAACAACAAATGGCTGC+AGG 0.539765 2.1:+8887737 MS.gene028716:CDS
GTGCAGAAGATATGTCTGAT+TGG 0.546714 2.1:+8889160 MS.gene028716:CDS
TCTGCACACGCAGACAACTT+CGG 0.550296 2.1:-8889144 None:intergenic
GATGACGGTGTGCGCAACTG+GGG 0.553313 2.1:+8887675 MS.gene028716:CDS
ATCAGCATCTGATTTGATGA+TGG 0.554629 2.1:-8887202 None:intergenic
ACACTGCTGCTGTTCCTGCT+GGG 0.555998 2.1:+8887823 MS.gene028716:CDS
CCATCAATGTTGAGGTTCGT+GGG 0.562309 2.1:-8887012 None:intergenic
AAATTGTGTAAATTCCCAGC+AGG 0.568311 2.1:-8887837 None:intergenic
GGCAGAAGTGCCATTCTGAA+AGG 0.569849 2.1:-8888156 None:intergenic
ACAGTGACTGGGACAACACC+AGG 0.571035 2.1:-8887327 None:intergenic
CATTATCCACAGCAAGCATA+CGG 0.571876 2.1:-8887866 None:intergenic
ATACACGGCTAGGGCACTCA+GGG 0.577305 2.1:+8889244 MS.gene028716:CDS
GGCCGAGGCACCAGAAGATG+GGG 0.581389 2.1:-8887988 None:intergenic
ACGGCTAGGGCACTCAGGGG+AGG 0.585773 2.1:+8889248 MS.gene028716:CDS
ACGAGCTGTGAATGGTGTTA+CGG 0.587958 2.1:-8887467 None:intergenic
CGGCCTCTAACATGCTGCAG+GGG 0.589921 2.1:+8888006 MS.gene028716:CDS
ATGACGGTGTGCGCAACTGG+GGG 0.590304 2.1:+8887676 MS.gene028716:CDS
TGTTTCAATGCGTATAGGGT+CGG 0.591883 2.1:+8887713 MS.gene028716:CDS
GATTCAGAGGGACAGTGACT+GGG 0.592096 2.1:-8887338 None:intergenic
GCAGGCAAAACAAGGTGTGA+CGG 0.592101 2.1:+8887935 MS.gene028716:CDS
TGGAAAGTCCGTGCAAACAA+TGG 0.594514 2.1:+8887540 MS.gene028716:CDS
GAGGCACCAGAAGATGGGGA+AGG 0.597671 2.1:-8887984 None:intergenic
TCATCAAATCAGATGCTGAT+CGG 0.600942 2.1:+8887205 MS.gene028716:CDS
TTGAACGCATGGCCAGAGCA+TGG 0.602170 2.1:+8887160 MS.gene028716:CDS
ACGCATGTACGAGCTGTGAA+TGG 0.603693 2.1:-8887475 None:intergenic
TTTGGTTGAATAAATCCGAA+AGG 0.604713 2.1:-8887393 None:intergenic
CAGGAACAGCAGCAGTGTTG+CGG 0.605989 2.1:-8887818 None:intergenic
AAATGAGACCATCAATGTTG+AGG 0.606614 2.1:-8887020 None:intergenic
GTTAAGGGTCAAACCCTCAT+CGG 0.607722 2.1:-8887046 None:intergenic
AATGGTACTAATGATGATGC+TGG 0.609753 2.1:+8888101 MS.gene028716:CDS
ATGATTCGGTATCAGCAGCT+AGG 0.610867 2.1:-8887068 None:intergenic
TAATGACCGTATGCTTGCTG+TGG 0.612476 2.1:+8887860 MS.gene028716:CDS
TGTTCTTGCTGCTCAAACAG+CGG 0.615374 2.1:+8887911 MS.gene028716:CDS
ACAGCGGTGCAGGCAAAACA+AGG 0.616066 2.1:+8887927 MS.gene028716:CDS
TAAATCCGAAAGGCAAACCA+TGG 0.623740 2.1:-8887383 None:intergenic
CAAATGTCCAGATGATTCAG+AGG 0.632735 2.1:-8887351 None:intergenic
GACAACGAGCAAAGACACAT+TGG 0.642621 2.1:+8889340 MS.gene028716:CDS
GAGCAGCATCAAGTTTGTGA+TGG 0.649177 2.1:-8887242 None:intergenic
GTGCCATTCTGAAAGGCAAG+CGG 0.650378 2.1:-8888149 None:intergenic
AGTTACATAATACACGGCTA+GGG 0.651975 2.1:+8889235 MS.gene028716:CDS
TTTCTCGATCGGCCAAAACG+CGG 0.652078 2.1:-8887119 None:intergenic
TGAAAGTTATCATAGAGCCA+TGG 0.655929 2.1:-8887282 None:intergenic
CAAACAGTGTTCAAGGATGG+GGG 0.667420 2.1:-8887091 None:intergenic
AAATGTCCAGATGATTCAGA+GGG 0.671219 2.1:-8887350 None:intergenic
GTCGACAGTTACATAATACA+CGG 0.705872 2.1:+8889229 MS.gene028716:CDS
TACACGGCTAGGGCACTCAG+GGG 0.747639 2.1:+8889245 MS.gene028716:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTTAAATATGAGAAATT+GGG + chr2.1:8887579-8887598 MS.gene028716:CDS 15.0%
!! TTTGTTTAAATATGAGAAAT+TGG + chr2.1:8887578-8887597 MS.gene028716:CDS 15.0%
!! TAATAATATAGGATAGTGAT+CGG - chr2.1:8888992-8889011 None:intergenic 20.0%
!! TGATAACTTTCATATAGTTA+TGG + chr2.1:8887293-8887312 MS.gene028716:CDS 20.0%
!!! GAAGTTCTTCAATTTTATTA+CGG - chr2.1:8888447-8888466 None:intergenic 20.0%
! ACATTTGATTCATCATACAT+AGG - chr2.1:8888269-8888288 None:intergenic 25.0%
! GGAGAACACTTTAATAATAT+AGG - chr2.1:8889003-8889022 None:intergenic 25.0%
! GTATGATGAATCAAATGTAA+TGG + chr2.1:8888271-8888290 MS.gene028716:intron 25.0%
! TCAACTTAAAATTGACATTG+AGG + chr2.1:8889200-8889219 MS.gene028716:CDS 25.0%
ACAAATTATTTGCAAGAGCA+CGG - chr2.1:8888918-8888937 None:intergenic 30.0%
AGACTCTTAAACCAAGTAAA+AGG - chr2.1:8888862-8888881 None:intergenic 30.0%
CAAACTGATTAGATAGTTGA+CGG - chr2.1:8888690-8888709 None:intergenic 30.0%
GTATGTTTGAATTGCGAAAA+AGG + chr2.1:8889280-8889299 MS.gene028716:CDS 30.0%
TATGTCAAGATGATGCTTAT+TGG + chr2.1:8889316-8889335 MS.gene028716:CDS 30.0%
TCACTTAAGAAGAGAATATC+CGG - chr2.1:8888412-8888431 None:intergenic 30.0%
TCATATCACTATTGAGATTG+TGG + chr2.1:8888582-8888601 MS.gene028716:intron 30.0%
TGATGAATCAAATGTAATGG+CGG + chr2.1:8888274-8888293 MS.gene028716:intron 30.0%
TTTACTTGGTTTAAGAGTCT+TGG + chr2.1:8888862-8888881 MS.gene028716:intron 30.0%
TTTCGGATTTATTCAACCAA+AGG + chr2.1:8887395-8887414 MS.gene028716:CDS 30.0%
TTTGGTTGAATAAATCCGAA+AGG - chr2.1:8887396-8887415 None:intergenic 30.0%
! ACTTTGGGAAATGATGTAAT+AGG + chr2.1:8888194-8888213 MS.gene028716:CDS 30.0%
! AGGATTTTGTTACTAACTCT+TGG + chr2.1:8889094-8889113 MS.gene028716:intron 30.0%
! ATTTTCGTTACGAAAATGCA+TGG + chr2.1:8889052-8889071 MS.gene028716:intron 30.0%
! GCTACTAAATTCATTTTCCT+TGG - chr2.1:8888319-8888338 None:intergenic 30.0%
!!! AATTGGGTGTTTTTTGTTAC+AGG + chr2.1:8887595-8887614 MS.gene028716:CDS 30.0%
!!! CACAAAGTTTTTTCATGCAT+CGG + chr2.1:8889383-8889402 MS.gene028716:intron 30.0%
AAATGAGACCATCAATGTTG+AGG - chr2.1:8887023-8887042 None:intergenic 35.0%
AAATGTCCAGATGATTCAGA+GGG - chr2.1:8887353-8887372 None:intergenic 35.0%
AAATTGTGTAAATTCCCAGC+AGG - chr2.1:8887840-8887859 None:intergenic 35.0%
AAGACACATTGGTATAAGGA+CGG + chr2.1:8889351-8889370 MS.gene028716:intron 35.0%
AAGAGTTTCAATAGTAGCGT+TGG - chr2.1:8888956-8888975 None:intergenic 35.0%
AATCAAACAGTGTTCAAGGA+TGG - chr2.1:8887097-8887116 None:intergenic 35.0%
AATTGGAACATCTGACAAAC+CGG - chr2.1:8888830-8888849 None:intergenic 35.0%
ACAATACCAGTAGCATTGTA+AGG - chr2.1:8888062-8888081 None:intergenic 35.0%
AGAGTTTCAATAGTAGCGTT+GGG - chr2.1:8888955-8888974 None:intergenic 35.0%
AGCAAAGACACATTGGTATA+AGG + chr2.1:8889347-8889366 MS.gene028716:intron 35.0%
AGTTACATAATACACGGCTA+GGG + chr2.1:8889235-8889254 MS.gene028716:CDS 35.0%
ATCAAACAGTGTTCAAGGAT+GGG - chr2.1:8887096-8887115 None:intergenic 35.0%
ATCCTTGAACACTGTTTGAT+TGG + chr2.1:8887096-8887115 MS.gene028716:CDS 35.0%
ATTAGGATAGCCATAATAGC+CGG - chr2.1:8888635-8888654 None:intergenic 35.0%
ATTTAGTAGCGTGGAATTGT+CGG + chr2.1:8888329-8888348 MS.gene028716:intron 35.0%
CAACTATCTAATCAGTTTGC+AGG + chr2.1:8888691-8888710 MS.gene028716:intron 35.0%
CATAAGAACCATTGTTTGCA+CGG - chr2.1:8887551-8887570 None:intergenic 35.0%
GATGAATCAAATGTAATGGC+GGG + chr2.1:8888275-8888294 MS.gene028716:intron 35.0%
GCAATTCAAACATACGAATC+TGG - chr2.1:8889275-8889294 None:intergenic 35.0%
GGAAAATGAATTTAGTAGCG+TGG + chr2.1:8888320-8888339 MS.gene028716:intron 35.0%
GGATTTATTCAACCAAAGGT+TGG + chr2.1:8887399-8887418 MS.gene028716:CDS 35.0%
GTAAAAGGATAACCCTCAAT+TGG - chr2.1:8888847-8888866 None:intergenic 35.0%
GTAACAAAATCCTTAAACCC+CGG - chr2.1:8889087-8889106 None:intergenic 35.0%
GTCGACAGTTACATAATACA+CGG + chr2.1:8889229-8889248 MS.gene028716:CDS 35.0%
GTGCTCTTGCAAATAATTTG+TGG + chr2.1:8888917-8888936 MS.gene028716:intron 35.0%
TATTATGGCTATCCTAATGG+AGG + chr2.1:8888637-8888656 MS.gene028716:intron 35.0%
TCATCAAATCAGATGCTGAT+CGG + chr2.1:8887205-8887224 MS.gene028716:CDS 35.0%
TCTGAATCATCTGGACATTT+GGG + chr2.1:8887353-8887372 MS.gene028716:CDS 35.0%
TGAAAGTTATCATAGAGCCA+TGG - chr2.1:8887285-8887304 None:intergenic 35.0%
TTGTCAGATGTTCCAATTGA+GGG + chr2.1:8888832-8888851 MS.gene028716:intron 35.0%
TTTGTCAGATGTTCCAATTG+AGG + chr2.1:8888831-8888850 MS.gene028716:intron 35.0%
! AAATGCATGGCATTTAGAAC+CGG + chr2.1:8889065-8889084 MS.gene028716:intron 35.0%
! AATGGTACTAATGATGATGC+TGG + chr2.1:8888101-8888120 MS.gene028716:CDS 35.0%
! ACTGGTATTGTTTTCTCTCA+AGG + chr2.1:8888071-8888090 MS.gene028716:CDS 35.0%
! ATCAGCATCTGATTTGATGA+TGG - chr2.1:8887205-8887224 None:intergenic 35.0%
! ATTGTTTTCTCTCAAGGTGA+CGG + chr2.1:8888077-8888096 MS.gene028716:CDS 35.0%
! CATCAAGTTTGTGATGGAAT+TGG - chr2.1:8887239-8887258 None:intergenic 35.0%
! CTAAATTCATTTTCCTTGGC+AGG - chr2.1:8888315-8888334 None:intergenic 35.0%
! TACTAATGATGATGCTGGTT+CGG + chr2.1:8888106-8888125 MS.gene028716:CDS 35.0%
! TTGAGGGTTATCCTTTTACT+TGG + chr2.1:8888848-8888867 MS.gene028716:intron 35.0%
! TTTTGTTACTAACTCTTGGC+AGG + chr2.1:8889098-8889117 MS.gene028716:intron 35.0%
!! CAACATTGATGGTCTCATTT+TGG + chr2.1:8887023-8887042 MS.gene028716:CDS 35.0%
!! TGCTCTTCTTGCTATTAAAC+AGG + chr2.1:8887887-8887906 MS.gene028716:CDS 35.0%
!! TTTCTCTTGATGATGACGTA+GGG + chr2.1:8889436-8889455 MS.gene028716:intron 35.0%
!!! ACTTTCCACTCCTTTTTCAA+AGG - chr2.1:8887528-8887547 None:intergenic 35.0%
!!! GAAGAACTTCGTTTTTTGCT+TGG + chr2.1:8888457-8888476 MS.gene028716:intron 35.0%
!!! GATGCGATTTACCTTTTTTC+GGG - chr2.1:8889415-8889434 None:intergenic 35.0%
!!! GGATGCGATTTACCTTTTTT+CGG - chr2.1:8889416-8889435 None:intergenic 35.0%
AAACCATTGATGAGCCAAGA+TGG - chr2.1:8888787-8888806 None:intergenic 40.0%
AAGCCTGTTTCAATGCGTAT+AGG + chr2.1:8887708-8887727 MS.gene028716:CDS 40.0%
AAGTCACCAAAAATGCACCA+AGG - chr2.1:8888718-8888737 None:intergenic 40.0%
AATTGCGAAAAAGGATGCAG+CGG + chr2.1:8889289-8889308 MS.gene028716:CDS 40.0%
AGACACATTGGTATAAGGAC+GGG + chr2.1:8889352-8889371 MS.gene028716:intron 40.0%
AGCCTGTTTCAATGCGTATA+GGG + chr2.1:8887709-8887728 MS.gene028716:CDS 40.0%
ATAGGATCTGATGTTAGTGC+TGG + chr2.1:8888212-8888231 MS.gene028716:intron 40.0%
ATTGAAACAGGCTTGAGATC+AGG - chr2.1:8887702-8887721 None:intergenic 40.0%
CAAATGTCCAGATGATTCAG+AGG - chr2.1:8887354-8887373 None:intergenic 40.0%
CAAGGAATTGGAAGCTTTCT+TGG + chr2.1:8887423-8887442 MS.gene028716:CDS 40.0%
CAGTTACATAATACACGGCT+AGG + chr2.1:8889234-8889253 MS.gene028716:CDS 40.0%
CATTATCCACAGCAAGCATA+CGG - chr2.1:8887869-8887888 None:intergenic 40.0%
CTACGTCATCATCAAGAGAA+AGG - chr2.1:8889437-8889456 None:intergenic 40.0%
CTCTGAATCATCTGGACATT+TGG + chr2.1:8887352-8887371 MS.gene028716:CDS 40.0%
GAGATTGTGGATTCTGTTCA+TGG + chr2.1:8888595-8888614 MS.gene028716:intron 40.0%
GAGTCCAATTCGAACAAATC+CGG - chr2.1:8887654-8887673 None:intergenic 40.0%
GGCTATTATGGCTATCCTAA+TGG + chr2.1:8888634-8888653 MS.gene028716:intron 40.0%
GTGCAGAAGATATGTCTGAT+TGG + chr2.1:8889160-8889179 MS.gene028716:CDS 40.0%
TAAATCCGAAAGGCAAACCA+TGG - chr2.1:8887386-8887405 None:intergenic 40.0%
TAGGATCTGATGTTAGTGCT+GGG + chr2.1:8888213-8888232 MS.gene028716:intron 40.0%
TCAAACAGTGTTCAAGGATG+GGG - chr2.1:8887095-8887114 None:intergenic 40.0%
TGCTTACTTCATTGAACGCA+TGG + chr2.1:8887149-8887168 MS.gene028716:CDS 40.0%
TGGATTCTGTTCATGGTACT+TGG + chr2.1:8888602-8888621 MS.gene028716:intron 40.0%
TGTTTCAATGCGTATAGGGT+CGG + chr2.1:8887713-8887732 MS.gene028716:CDS 40.0%
TTAAGGTCGGGAATTGTACT+CGG - chr2.1:8888367-8888386 None:intergenic 40.0%
TTTAGTAGCGTGGAATTGTC+GGG + chr2.1:8888330-8888349 MS.gene028716:intron 40.0%
! AATGCATGGCATTTAGAACC+GGG + chr2.1:8889066-8889085 MS.gene028716:intron 40.0%
! AGCAGCTTTGATTTCTCGAT+CGG - chr2.1:8887133-8887152 None:intergenic 40.0%
! ATTCAACCAAAGGTTGGTCA+AGG + chr2.1:8887405-8887424 MS.gene028716:CDS 40.0%
! GTGCAGATTGGAACACATTT+TGG - chr2.1:8887788-8887807 None:intergenic 40.0%
! TAAAGTGTTCTCCTTCACCT+CGG + chr2.1:8889010-8889029 MS.gene028716:intron 40.0%
!! CTTTCTCTTGATGATGACGT+AGG + chr2.1:8889435-8889454 MS.gene028716:intron 40.0%
!!! GATTGGAACACATTTTGGCT+CGG - chr2.1:8887783-8887802 None:intergenic 40.0%
!!! GGTGTTTTTTGTTACAGGTG+TGG + chr2.1:8887600-8887619 MS.gene028716:CDS 40.0%
!!! GTTTTTTCATGCATCGGCTA+CGG + chr2.1:8889389-8889408 MS.gene028716:intron 40.0%
ACCATCAATGTTGAGGTTCG+TGG - chr2.1:8887016-8887035 None:intergenic 45.0%
AGACCATCTTGGCTCATCAA+TGG + chr2.1:8888781-8888800 MS.gene028716:intron 45.0%
AGGATCTGATGTTAGTGCTG+GGG + chr2.1:8888214-8888233 MS.gene028716:intron 45.0%
ATAGGATAGTGATCGGAAGC+AGG - chr2.1:8888985-8889004 None:intergenic 45.0%
CAAACAGTGTTCAAGGATGG+GGG - chr2.1:8887094-8887113 None:intergenic 45.0%
CATGGTACTTGGAGAATGAC+CGG + chr2.1:8888613-8888632 MS.gene028716:intron 45.0%
CATTCTTGGTCATTCGGACA+AGG + chr2.1:8887623-8887642 MS.gene028716:CDS 45.0%
CCAATTCCTTGACCAACCTT+TGG - chr2.1:8887414-8887433 None:intergenic 45.0%
CCATCAATGTTGAGGTTCGT+GGG - chr2.1:8887015-8887034 None:intergenic 45.0%
CTAATCAGTTTGCAGGTCCT+TGG + chr2.1:8888698-8888717 MS.gene028716:intron 45.0%
GAATATCCGGATTGAAGTGC+CGG - chr2.1:8888399-8888418 None:intergenic 45.0%
GACAACGAGCAAAGACACAT+TGG + chr2.1:8889340-8889359 MS.gene028716:CDS 45.0%
GACACATTGGTATAAGGACG+GGG + chr2.1:8889353-8889372 MS.gene028716:intron 45.0%
GACCCTATACGCATTGAAAC+AGG - chr2.1:8887714-8887733 None:intergenic 45.0%
GAGCAGCATCAAGTTTGTGA+TGG - chr2.1:8887245-8887264 None:intergenic 45.0%
GGCCAATCAAACAGTGTTCA+AGG - chr2.1:8887101-8887120 None:intergenic 45.0%
GGTATCAGCAGCTAGGTTAA+GGG - chr2.1:8887064-8887083 None:intergenic 45.0%
GTGTGGCATTCTTGGTCATT+CGG + chr2.1:8887617-8887636 MS.gene028716:CDS 45.0%
GTTAAGGGTCAAACCCTCAT+CGG - chr2.1:8887049-8887068 None:intergenic 45.0%
TAAGGTCGGGAATTGTACTC+GGG - chr2.1:8888366-8888385 None:intergenic 45.0%
TGATGAGCCAAGATGGTCTA+GGG - chr2.1:8888780-8888799 None:intergenic 45.0%
TGCTAACAACAAATGGCTGC+AGG + chr2.1:8887737-8887756 MS.gene028716:CDS 45.0%
TGGAAAGTCCGTGCAAACAA+TGG + chr2.1:8887540-8887559 MS.gene028716:CDS 45.0%
TGGAGAATGACCGGCTATTA+TGG + chr2.1:8888622-8888641 MS.gene028716:intron 45.0%
TGTTACAGGTGTGGCATTCT+TGG + chr2.1:8887609-8887628 MS.gene028716:CDS 45.0%
TGTTCTTGCTGCTCAAACAG+CGG + chr2.1:8887911-8887930 MS.gene028716:CDS 45.0%
TTAGTAGCGTGGAATTGTCG+GGG + chr2.1:8888331-8888350 MS.gene028716:intron 45.0%
TTCAAGGATGGGGGATGATT+CGG - chr2.1:8887085-8887104 None:intergenic 45.0%
TTCGAATTGGACTCCGATGA+CGG + chr2.1:8887660-8887679 MS.gene028716:CDS 45.0%
TTGACGGAGAAAATTCCACG+CGG - chr2.1:8888674-8888693 None:intergenic 45.0%
TTGATGAGCCAAGATGGTCT+AGG - chr2.1:8888781-8888800 None:intergenic 45.0%
TTTGCTGCTGATGGGACTTT+GGG + chr2.1:8888179-8888198 MS.gene028716:CDS 45.0%
! ACGAGCTGTGAATGGTGTTA+CGG - chr2.1:8887470-8887489 None:intergenic 45.0%
! ACTTGATGCTGCTCGCATTT+TGG + chr2.1:8887251-8887270 MS.gene028716:CDS 45.0%
! ATGCATGGCATTTAGAACCG+GGG + chr2.1:8889067-8889086 MS.gene028716:intron 45.0%
! CCAAAGGTTGGTCAAGGAAT+TGG + chr2.1:8887411-8887430 MS.gene028716:CDS 45.0%
! GCATTTAGAACCGGGGTTTA+AGG + chr2.1:8889074-8889093 MS.gene028716:intron 45.0%
! GTGTCCGGATTTGTTCGAAT+TGG + chr2.1:8887647-8887666 MS.gene028716:CDS 45.0%
! TAATGACCGTATGCTTGCTG+TGG + chr2.1:8887860-8887879 MS.gene028716:CDS 45.0%
! TCGGCAAAGCATCAGGTATA+GGG - chr2.1:8887764-8887783 None:intergenic 45.0%
! TGTCACTGCGCCTTTGAAAA+AGG + chr2.1:8887515-8887534 MS.gene028716:CDS 45.0%
! TTCTCTCAAGGTGACGGTAA+TGG + chr2.1:8888083-8888102 MS.gene028716:CDS 45.0%
!! ATGATTCGGTATCAGCAGCT+AGG - chr2.1:8887071-8887090 None:intergenic 45.0%
ACGCATGTACGAGCTGTGAA+TGG - chr2.1:8887478-8887497 None:intergenic 50.0%
ACTTCTGCCTTTGCTGCTGA+TGG + chr2.1:8888170-8888189 MS.gene028716:CDS 50.0%
ATGATGGTCACACGTTTGCC+TGG - chr2.1:8887189-8887208 None:intergenic 50.0%
CAAAGTCCCATCAGCAGCAA+AGG - chr2.1:8888180-8888199 None:intergenic 50.0%
CACTGTCCCTCTGAATCATC+TGG + chr2.1:8887344-8887363 MS.gene028716:CDS 50.0%
CAGGCAAAACAAGGTGTGAC+GGG + chr2.1:8887936-8887955 MS.gene028716:CDS 50.0%
CCCACGAACCTCAACATTGA+TGG + chr2.1:8887012-8887031 MS.gene028716:CDS 50.0%
CCGACCTTAAGTACCTAGTC+CGG + chr2.1:8888377-8888396 MS.gene028716:intron 50.0%
CGGTATCAGCAGCTAGGTTA+AGG - chr2.1:8887065-8887084 None:intergenic 50.0%
CTTCTGCCTTTGCTGCTGAT+GGG + chr2.1:8888171-8888190 MS.gene028716:CDS 50.0%
CTTTGCTGCTGATGGGACTT+TGG + chr2.1:8888178-8888197 MS.gene028716:CDS 50.0%
GACAACACCAGGAGCAATAC+GGG - chr2.1:8887319-8887338 None:intergenic 50.0%
GATTCAGAGGGACAGTGACT+GGG - chr2.1:8887341-8887360 None:intergenic 50.0%
GCAGGCAAAACAAGGTGTGA+CGG + chr2.1:8887935-8887954 MS.gene028716:CDS 50.0%
GCAGTTCTACGACCTCCATT+AGG - chr2.1:8888652-8888671 None:intergenic 50.0%
GCTGTGCCTTACAATGCTAC+TGG + chr2.1:8888053-8888072 MS.gene028716:CDS 50.0%
GGACAACACCAGGAGCAATA+CGG - chr2.1:8887320-8887339 None:intergenic 50.0%
GGTCGGCTGCTAACAACAAA+TGG + chr2.1:8887730-8887749 MS.gene028716:CDS 50.0%
GTAGCATTGTAAGGCACAGC+AGG - chr2.1:8888053-8888072 None:intergenic 50.0%
TCATCTGGACATTTGGGTGC+AGG + chr2.1:8887359-8887378 MS.gene028716:CDS 50.0%
TCATTCGGACAAGGTGTGTC+CGG + chr2.1:8887632-8887651 MS.gene028716:CDS 50.0%
TCTCGACGCTAGTGAGAAGA+GGG + chr2.1:8888747-8888766 MS.gene028716:intron 50.0%
TCTGCACACGCAGACAACTT+CGG - chr2.1:8889147-8889166 None:intergenic 50.0%
TGATTCAGAGGGACAGTGAC+TGG - chr2.1:8887342-8887361 None:intergenic 50.0%
TGTCTTCCTATAGACCGCAC+CGG + chr2.1:8888490-8888509 MS.gene028716:intron 50.0%
TTCTCGACGCTAGTGAGAAG+AGG + chr2.1:8888746-8888765 MS.gene028716:intron 50.0%
TTTCTCGATCGGCCAAAACG+CGG - chr2.1:8887122-8887141 None:intergenic 50.0%
TTTGCCTGGTTTCCATGCTC+TGG - chr2.1:8887175-8887194 None:intergenic 50.0%
! AGTGCCGGACTAGGTACTTA+AGG - chr2.1:8888384-8888403 None:intergenic 50.0%
! ATCTGATGTTAGTGCTGGGG+GGG + chr2.1:8888217-8888236 MS.gene028716:intron 50.0%
! CAGGTCCATGGTTTGCCTTT+CGG + chr2.1:8887378-8887397 MS.gene028716:CDS 50.0%
! CCGGACTAGGTACTTAAGGT+CGG - chr2.1:8888380-8888399 None:intergenic 50.0%
! CGGACTAGGTACTTAAGGTC+GGG - chr2.1:8888379-8888398 None:intergenic 50.0%
! CTCGGCAAAGCATCAGGTAT+AGG - chr2.1:8887765-8887784 None:intergenic 50.0%
! CTGCGCCTTTGAAAAAGGAG+TGG + chr2.1:8887520-8887539 MS.gene028716:CDS 50.0%
! GATCTGATGTTAGTGCTGGG+GGG + chr2.1:8888216-8888235 MS.gene028716:intron 50.0%
! GGATCTGATGTTAGTGCTGG+GGG + chr2.1:8888215-8888234 MS.gene028716:intron 50.0%
! GTGCCATTCTGAAAGGCAAG+CGG - chr2.1:8888152-8888171 None:intergenic 50.0%
! TGCCATTCTGAAAGGCAAGC+GGG - chr2.1:8888151-8888170 None:intergenic 50.0%
! TTCATTTTCCTTGGCAGGCC+TGG - chr2.1:8888310-8888329 None:intergenic 50.0%
!! AAACAAGGTGTGACGGGTTC+TGG + chr2.1:8887942-8887961 MS.gene028716:CDS 50.0%
!! CGTCAAGCAGTTATCGACTC+CGG + chr2.1:8888808-8888827 MS.gene028716:intron 50.0%
!! CTGTTTGATTGGCCGCGTTT+TGG + chr2.1:8887107-8887126 MS.gene028716:CDS 50.0%
!! GCAGGTCCTTGGTGCATTTT+TGG + chr2.1:8888709-8888728 MS.gene028716:intron 50.0%
!! GGCAGAAGTGCCATTCTGAA+AGG - chr2.1:8888159-8888178 None:intergenic 50.0%
!! GGTCTCATTTTGGCCGATGA+GGG + chr2.1:8887033-8887052 MS.gene028716:CDS 50.0%
!! TGGTCTCATTTTGGCCGATG+AGG + chr2.1:8887032-8887051 MS.gene028716:CDS 50.0%
!!! GCGGGGGTCTAGCTTTATTT+TGG + chr2.1:8888518-8888537 MS.gene028716:intron 50.0%
!!! TTTTGGCTCGGCAAAGCATC+AGG - chr2.1:8887771-8887790 None:intergenic 50.0%
AACACTGCTGCTGTTCCTGC+TGG + chr2.1:8887822-8887841 MS.gene028716:CDS 55.0%
ACACTGCTGCTGTTCCTGCT+GGG + chr2.1:8887823-8887842 MS.gene028716:CDS 55.0%
ACAGCGGTGCAGGCAAAACA+AGG + chr2.1:8887927-8887946 MS.gene028716:CDS 55.0%
ACAGTGACTGGGACAACACC+AGG - chr2.1:8887330-8887349 None:intergenic 55.0%
ATCGGCTACGGCCCGAAAAA+AGG + chr2.1:8889401-8889420 MS.gene028716:intron 55.0%
ATGGCCAGAGCATGGAAACC+AGG + chr2.1:8887168-8887187 MS.gene028716:CDS 55.0%
CACCTCGGCTTCAGCATCAT+AGG + chr2.1:8889025-8889044 MS.gene028716:intron 55.0%
CAGGAACAGCAGCAGTGTTG+CGG - chr2.1:8887821-8887840 None:intergenic 55.0%
CCTAGTCCGGCACTTCAATC+CGG + chr2.1:8888390-8888409 MS.gene028716:intron 55.0%
CTCGACGCTAGTGAGAAGAG+GGG + chr2.1:8888748-8888767 MS.gene028716:intron 55.0%
GACATTTGGGTGCAGGTCCA+TGG + chr2.1:8887366-8887385 MS.gene028716:CDS 55.0%
GTTATGGCCCGTATTGCTCC+TGG + chr2.1:8887309-8887328 MS.gene028716:CDS 55.0%
TCGACGCTAGTGAGAAGAGG+GGG + chr2.1:8888749-8888768 MS.gene028716:intron 55.0%
TCGGCCTCTAACATGCTGCA+GGG + chr2.1:8888005-8888024 MS.gene028716:CDS 55.0%
TGATGCTGAAGCCGAGGTGA+AGG - chr2.1:8889024-8889043 None:intergenic 55.0%
TTCCAATCTGCACAGCCTGC+TGG + chr2.1:8887795-8887814 MS.gene028716:CDS 55.0%
TTCCCCATCTTCTGGTGCCT+CGG + chr2.1:8887986-8888005 MS.gene028716:CDS 55.0%
TTCCTGCCTTCCCCATCTTC+TGG + chr2.1:8887978-8887997 MS.gene028716:CDS 55.0%
TTGAACGCATGGCCAGAGCA+TGG + chr2.1:8887160-8887179 MS.gene028716:CDS 55.0%
! AATACACGGCTAGGGCACTC+AGG + chr2.1:8889243-8889262 MS.gene028716:CDS 55.0%
! ATACACGGCTAGGGCACTCA+GGG + chr2.1:8889244-8889263 MS.gene028716:CDS 55.0%
! CTGCTCGCATTTTGGACGAG+GGG + chr2.1:8887259-8887278 MS.gene028716:CDS 55.0%
! GCTGCTCGCATTTTGGACGA+GGG + chr2.1:8887258-8887277 MS.gene028716:CDS 55.0%
! TGCTGCTCGCATTTTGGACG+AGG + chr2.1:8887257-8887276 MS.gene028716:CDS 55.0%
AACCTTTCCTCCACCGCTCG+TGG - chr2.1:8888892-8888911 None:intergenic 60.0%
ACGCCCCTGCAGCATGTTAG+AGG - chr2.1:8888012-8888031 None:intergenic 60.0%
ATGACGGTGTGCGCAACTGG+GGG + chr2.1:8887676-8887695 MS.gene028716:CDS 60.0%
CACCAGAAGATGGGGAAGGC+AGG - chr2.1:8887983-8888002 None:intergenic 60.0%
CCAGTTGCGCACACCGTCAT+CGG - chr2.1:8887676-8887695 None:intergenic 60.0%
CCTCTACCGGTGCGGTCTAT+AGG - chr2.1:8888499-8888518 None:intergenic 60.0%
CGCCCGCTTGCCTTTCAGAA+TGG + chr2.1:8888146-8888165 MS.gene028716:CDS 60.0%
CGCCTATGATGCTGAAGCCG+AGG - chr2.1:8889030-8889049 None:intergenic 60.0%
CGGCCTCTAACATGCTGCAG+GGG + chr2.1:8888006-8888025 MS.gene028716:CDS 60.0%
CTCGGCCTCTAACATGCTGC+AGG + chr2.1:8888004-8888023 MS.gene028716:CDS 60.0%
CTGCAGCATGTTAGAGGCCG+AGG - chr2.1:8888006-8888025 None:intergenic 60.0%
GAGTCTTGGTACGCCACGAG+CGG + chr2.1:8888876-8888895 MS.gene028716:intron 60.0%
GCGTGGAATTGTCGGGGTGT+AGG + chr2.1:8888337-8888356 MS.gene028716:intron 60.0%
GGCGCAACCCTAGACCATCT+TGG + chr2.1:8888770-8888789 MS.gene028716:intron 60.0%
TGCTGCTCAAACAGCGGTGC+AGG + chr2.1:8887917-8887936 MS.gene028716:CDS 60.0%
! AGGCCGAGGCACCAGAAGAT+GGG - chr2.1:8887992-8888011 None:intergenic 60.0%
! ATAGACCGCACCGGTAGAGG+CGG + chr2.1:8888499-8888518 MS.gene028716:intron 60.0%
! CCTATAGACCGCACCGGTAG+AGG + chr2.1:8888496-8888515 MS.gene028716:intron 60.0%
! CGATGACGGTGTGCGCAACT+GGG + chr2.1:8887674-8887693 MS.gene028716:CDS 60.0%
! GAGGCACCAGAAGATGGGGA+AGG - chr2.1:8887987-8888006 None:intergenic 60.0%
! GATGACGGTGTGCGCAACTG+GGG + chr2.1:8887675-8887694 MS.gene028716:CDS 60.0%
! GCATTTTGGACGAGGGGCCA+TGG + chr2.1:8887265-8887284 MS.gene028716:CDS 60.0%
! TACACGGCTAGGGCACTCAG+GGG + chr2.1:8889245-8889264 MS.gene028716:CDS 60.0%
!! AATGGCGGGTCCTGATGACC+AGG + chr2.1:8888289-8888308 MS.gene028716:intron 60.0%
!! CCGGATTGAAGTGCCGGACT+AGG - chr2.1:8888393-8888412 None:intergenic 60.0%
AGCTAGACCCCCGCCTCTAC+CGG - chr2.1:8888512-8888531 None:intergenic 65.0%
CCTGATGACCAGGCCTGCCA+AGG + chr2.1:8888299-8888318 MS.gene028716:intron 65.0%
CCTTGGCAGGCCTGGTCATC+AGG - chr2.1:8888302-8888321 None:intergenic 65.0%
GAGGTCGTAGAACTGCCGCG+TGG + chr2.1:8888656-8888675 MS.gene028716:intron 65.0%
GGCCAGCAGGCTGTGCAGAT+TGG - chr2.1:8887800-8887819 None:intergenic 65.0%
TCTTGGTACGCCACGAGCGG+TGG + chr2.1:8888879-8888898 MS.gene028716:intron 65.0%
! CCGATGACGGTGTGCGCAAC+TGG + chr2.1:8887673-8887692 MS.gene028716:CDS 65.0%
! GAGGCCGAGGCACCAGAAGA+TGG - chr2.1:8887993-8888012 None:intergenic 65.0%
! GGCCGAGGCACCAGAAGATG+GGG - chr2.1:8887991-8888010 None:intergenic 65.0%
! TAGACCGCACCGGTAGAGGC+GGG + chr2.1:8888500-8888519 MS.gene028716:intron 65.0%
!! CAGGGGCGTTCACTGGTGCT+TGG + chr2.1:8888023-8888042 MS.gene028716:CDS 65.0%
!! CATGCTGCAGGGGCGTTCAC+TGG + chr2.1:8888016-8888035 MS.gene028716:CDS 65.0%
CGCCACGAGCGGTGGAGGAA+AGG + chr2.1:8888887-8888906 MS.gene028716:intron 70.0%
GCAGCAGTGTTGCGGCCAGC+AGG - chr2.1:8887813-8887832 None:intergenic 70.0%
TGGTACGCCACGAGCGGTGG+AGG + chr2.1:8888882-8888901 MS.gene028716:intron 70.0%
! ACGGCTAGGGCACTCAGGGG+AGG + chr2.1:8889248-8889267 MS.gene028716:CDS 70.0%
! AGACCGCACCGGTAGAGGCG+GGG + chr2.1:8888501-8888520 MS.gene028716:intron 70.0%
GACCCCCGCCTCTACCGGTG+CGG - chr2.1:8888507-8888526 None:intergenic 75.0%
! GACCGCACCGGTAGAGGCGG+GGG + chr2.1:8888502-8888521 MS.gene028716:intron 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 8887006 8889463 8887006 ID=MS.gene028716
chr2.1 mRNA 8887006 8889463 8887006 ID=MS.gene028716.t1;Parent=MS.gene028716
chr2.1 exon 8887006 8888223 8887006 ID=MS.gene028716.t1.exon1;Parent=MS.gene028716.t1
chr2.1 CDS 8887006 8888223 8887006 ID=cds.MS.gene028716.t1;Parent=MS.gene028716.t1
chr2.1 exon 8889120 8889361 8889120 ID=MS.gene028716.t1.exon2;Parent=MS.gene028716.t1
chr2.1 CDS 8889120 8889361 8889120 ID=cds.MS.gene028716.t1;Parent=MS.gene028716.t1
chr2.1 exon 8889457 8889463 8889457 ID=MS.gene028716.t1.exon3;Parent=MS.gene028716.t1
chr2.1 CDS 8889457 8889463 8889457 ID=cds.MS.gene028716.t1;Parent=MS.gene028716.t1
Gene Sequence

>MS.gene028716

ATGGATCCCACGAACCTCAACATTGATGGTCTCATTTTGGCCGATGAGGGTTTGACCCTTAACCTAGCTGCTGATACCGAATCATCCCCCATCCTTGAACACTGTTTGATTGGCCGCGTTTTGGCCGATCGAGAAATCAAAGCTGCTTACTTCATTGAACGCATGGCCAGAGCATGGAAACCAGGCAAACGTGTGACCATCATCAAATCAGATGCTGATCGGTTTCTGTTCCAATTCCATCACAAACTTGATGCTGCTCGCATTTTGGACGAGGGGCCATGGCTCTATGATAACTTTCATATAGTTATGGCCCGTATTGCTCCTGGTGTTGTCCCAGTCACTGTCCCTCTGAATCATCTGGACATTTGGGTGCAGGTCCATGGTTTGCCTTTCGGATTTATTCAACCAAAGGTTGGTCAAGGAATTGGAAGCTTTCTTGGTGCTCTACACACTTATGATAGCCGTAACACCATTCACAGCTCGTACATGCGTCTCAAAGTGTGTATTGATGTCACTGCGCCTTTGAAAAAGGAGTGGAAAGTCCGTGCAAACAATGGTTCTTATGTTACTGTTTTGTTTAAATATGAGAAATTGGGTGTTTTTTGTTACAGGTGTGGCATTCTTGGTCATTCGGACAAGGTGTGTCCGGATTTGTTCGAATTGGACTCCGATGACGGTGTGCGCAACTGGGGGCCTGATCTCAAGCCTGTTTCAATGCGTATAGGGTCGGCTGCTAACAACAAATGGCTGCAGGACCCTATACCTGATGCTTTGCCGAGCCAAAATGTGTTCCAATCTGCACAGCCTGCTGGCCGCAACACTGCTGCTGTTCCTGCTGGGAATTTACACAATTTTAATGACCGTATGCTTGCTGTGGATAATGCTCTTCTTGCTATTAAACAGGATGTTCTTGCTGCTCAAACAGCGGTGCAGGCAAAACAAGGTGTGACGGGTTCTGGCTGTCAAATTCAGTTCCTGCCTTCCCCATCTTCTGGTGCCTCGGCCTCTAACATGCTGCAGGGGCGTTCACTGGTGCTTGGACTGCCTGCTGTGCCTTACAATGCTACTGGTATTGTTTTCTCTCAAGGTGACGGTAATGGTACTAATGATGATGCTGGTTCGGAATTGAAAAAGAGAAAGCGCCCGCTTGCCTTTCAGAATGGCACTTCTGCCTTTGCTGCTGATGGGACTTTGGGAAATGATGTAATAGGATCTGATGTTAGTGCTGGGGGGGATTTTGAAATGAATGTATTTTCTAATCCTATGTATGATGAATCAAATGTAATGGCGGGTCCTGATGACCAGGCCTGCCAAGGAAAATGAATTTAGTAGCGTGGAATTGTCGGGGTGTAGGTAGCCCGAGTACAATTCCCGACCTTAAGTACCTAGTCCGGCACTTCAATCCGGATATTCTCTTCTTAAGTGAGACTCTAGCTCACCGTAATAAAATTGAAGAACTTCGTTTTTTGCTTGGTTACGATTCTTGTCTTCCTATAGACCGCACCGGTAGAGGCGGGGGTCTAGCTTTATTTTGGCGCAATTCTTTACACTGTCAACTTATTGATTTTTCTCATAATCATATCACTATTGAGATTGTGGATTCTGTTCATGGTACTTGGAGAATGACCGGCTATTATGGCTATCCTAATGGAGGTCGTAGAACTGCCGCGTGGAATTTTCTCCGTCAACTATCTAATCAGTTTGCAGGTCCTTGGTGCATTTTTGGTGACTTTAACGATATTCTCGACGCTAGTGAGAAGAGGGGGCGCAACCCTAGACCATCTTGGCTCATCAATGGTTTTCGTCAAGCAGTTATCGACTCCGGTTTGTCAGATGTTCCAATTGAGGGTTATCCTTTTACTTGGTTTAAGAGTCTTGGTACGCCACGAGCGGTGGAGGAAAGGTTAGACCGTGCTCTTGCAAATAATTTGTGGCTTAATTTATTTCCCAACGCTACTATTGAAACTCTTGTCGCACCTGCTTCCGATCACTATCCTATATTATTAAAGTGTTCTCCTTCACCTCGGCTTCAGCATCATAGGCGCAATTTTCGTTACGAAAATGCATGGCATTTAGAACCGGGGTTTAAGGATTTTGTTACTAACTCTTGGCAGGTGCACTCTTCGTATTCTCTTGTTCCGAAGTTGTCTGCGTGTGCAGAAGATATGTCTGATTGGCGCAAAACTCATTGTCATCAACTTAAAATTGACATTGAGGATTGTCGTCGACAGTTACATAATACACGGCTAGGGCACTCAGGGGAGGACCAGATTCGTATGTTTGAATTGCGAAAAAGGATGCAGCGGCTACTATGTCAAGATGATGCTTATTGGCGACAACGAGCAAAGACACATTGGTATAAGGACGGGGATAGAAACACAAAGTTTTTTCATGCATCGGCTACGGCCCGAAAAAAGGTAAATCGCATCCTTTCTCTTGATGATGACGTAGGGAATAA

Protein sequence

>MS.gene028716.t1

MDPTNLNIDGLILADEGLTLNLAADTESSPILEHCLIGRVLADREIKAAYFIERMARAWKPGKRVTIIKSDADRFLFQFHHKLDAARILDEGPWLYDNFHIVMARIAPGVVPVTVPLNHLDIWVQVHGLPFGFIQPKVGQGIGSFLGALHTYDSRNTIHSSYMRLKVCIDVTAPLKKEWKVRANNGSYVTVLFKYEKLGVFCYRCGILGHSDKVCPDLFELDSDDGVRNWGPDLKPVSMRIGSAANNKWLQDPIPDALPSQNVFQSAQPAGRNTAAVPAGNLHNFNDRMLAVDNALLAIKQDVLAAQTAVQAKQGVTGSGCQIQFLPSPSSGASASNMLQGRSLVLGLPAVPYNATGIVFSQGDGNGTNDDAGSELKKRKRPLAFQNGTSAFAADGTLGNDVIGSDVHSSYSLVPKLSACAEDMSDWRKTHCHQLKIDIEDCRRQLHNTRLGHSGEDQIRMFELRKRMQRLLCQDDAYWRQRAKTHWE