AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044729

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044729.t1 MTR_3g053920 62.500 304 76 3 1 304 1 266 1.48e-127 365
MS.gene044729.t1 MTR_2g061500 79.845 129 26 0 1 129 1 129 1.46e-73 223
MS.gene044729.t1 MTR_4g103530 49.130 230 67 5 57 286 3 182 2.98e-64 201
MS.gene044729.t1 MTR_7g011710 67.059 85 28 0 55 139 1 85 5.09e-35 125
MS.gene044729.t1 MTR_0010s0370 38.202 178 98 4 8 177 4 177 6.77e-32 117
MS.gene044729.t1 MTR_0010s0350 38.202 178 98 4 8 177 4 177 6.77e-32 117
MS.gene044729.t1 MTR_6g033215 36.184 152 95 1 29 178 122 273 2.82e-27 108
MS.gene044729.t1 MTR_1g036720 33.010 103 69 0 11 113 9 111 1.20e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCCAGCAGATGTATTT+TGG 0.145079 4.4:-51416085 None:intergenic
GTTCCAAACCTTTGCGTAAC+TGG 0.267932 4.4:-51415826 None:intergenic
CCTATGCCTTGACCTACTTT+TGG 0.278124 4.4:-51415535 None:intergenic
ATTCTCGAATACTGTCTTAT+TGG 0.282618 4.4:+51415220 MS.gene044729:CDS
CATCGACTTTGTGGTGAAAC+TGG 0.315582 4.4:-51415360 None:intergenic
CTGATGATGGCGACCGCAAT+TGG 0.328177 4.4:+51415788 MS.gene044729:CDS
AGATATACGCTCGCACAAAT+AGG 0.331277 4.4:-51415275 None:intergenic
TTCATTCCTGCAGAGCGATT+TGG 0.343053 4.4:-51416668 None:intergenic
CAGGTTCGGTTTCAAGGTTA+AGG 0.359894 4.4:-51415186 None:intergenic
CATTATCAGGTTCGGTTTCA+AGG 0.368403 4.4:-51415192 None:intergenic
TCGAGAATGGCAGCATTATC+AGG 0.371937 4.4:-51415205 None:intergenic
CGATACGATCCATGGCAATA+TGG 0.373064 4.4:-51415426 None:intergenic
CAAGGCATAGGAAGCTTCTT+AGG 0.376769 4.4:+51415547 MS.gene044729:CDS
CAACCAACGGTTTGTGGCAG+CGG 0.377733 4.4:-51415848 None:intergenic
CAAGTTCACGGTCTGCCTTT+CGG 0.389727 4.4:+51415502 MS.gene044729:CDS
TTTAGCTAGCACCGCATTCT+GGG 0.402038 4.4:-51416037 None:intergenic
AAACCAGTTACGCAAAGGTT+TGG 0.405741 4.4:+51415823 MS.gene044729:CDS
AGCGACTCTGACACGCATAT+TGG 0.407533 4.4:-51415611 None:intergenic
TGTCACAGGTGTGGATTGAT+TGG 0.423731 4.4:+51415733 MS.gene044729:intron
TGCTTCCAAAATACATCTGC+TGG 0.424718 4.4:+51416080 MS.gene044729:CDS
AGGTTCGGTTTCAAGGTTAA+GGG 0.437088 4.4:-51415185 None:intergenic
TGGTTCAGTGGGACAAAGCT+AGG 0.443161 4.4:-51415463 None:intergenic
TGATGATGGCGACCGCAATT+GGG 0.445254 4.4:+51415789 MS.gene044729:CDS
ATCTTGCAACCAACGGTTTG+TGG 0.450416 4.4:-51415854 None:intergenic
GTGATCGTGACCTTCTTGCC+TGG 0.463833 4.4:-51415310 None:intergenic
TATAGACCAAATCGCTCTGC+AGG 0.469827 4.4:+51416662 MS.gene044729:intron
GCCATGGATCGTATCGCTCC+TGG 0.471951 4.4:+51415433 MS.gene044729:CDS
AATGGCAGCATTATCAGGTT+CGG 0.471986 4.4:-51415200 None:intergenic
CAAGCAGGTGCTGCTTCTGT+TGG 0.476934 4.4:+51415910 MS.gene044729:CDS
CGGTCTCACCTTGTCTGAAG+AGG 0.477786 4.4:+51415156 MS.gene044729:CDS
TGTGACATAGAAGCAGGAAT+AGG 0.487822 4.4:-51415877 None:intergenic
CAACAGAAGCAGCACCTGCT+TGG 0.492986 4.4:-51415909 None:intergenic
CCTTCCAACATTAACCTTGA+CGG 0.499725 4.4:+51415136 MS.gene044729:CDS
CTGCTGGCTTCTTCTTCCAC+AGG 0.507471 4.4:+51416096 MS.gene044729:CDS
CCCGAGTTAGATTCTGATGA+TGG 0.525609 4.4:+51415775 MS.gene044729:CDS
AACTGTAGCTACTGAAGGTG+TGG 0.530757 4.4:+51415936 MS.gene044729:CDS
ATATCTCGTGCATGGAAGCC+AGG 0.533414 4.4:+51415292 MS.gene044729:CDS
GGATTCATCCAACCAAAAGT+AGG 0.533518 4.4:+51415523 MS.gene044729:CDS
AATAAGACAGTATTCGAGAA+TGG 0.548878 4.4:-51415218 None:intergenic
GTTTGATGTGACATAGAAGC+AGG 0.552176 4.4:-51415883 None:intergenic
CACCTTCAGTAGCTACAGTT+CGG 0.553449 4.4:-51415933 None:intergenic
TACGTGCAACATCGACTTTG+TGG 0.554659 4.4:-51415369 None:intergenic
TGATAATTTCCATATTGCCA+TGG 0.555425 4.4:+51415417 MS.gene044729:CDS
GGTCTCACCTTGTCTGAAGA+GGG 0.564346 4.4:+51415157 MS.gene044729:CDS
GAACCGCTGCCACAAACCGT+TGG 0.569652 4.4:+51415845 MS.gene044729:CDS
TGTTGCACGTATCCTTGATG+AGG 0.571188 4.4:+51415381 MS.gene044729:CDS
TCAAGTCAGCTCCCCAATTG+CGG 0.573419 4.4:-51415801 None:intergenic
GAGACCGTCAAGGTTAATGT+TGG 0.573663 4.4:-51415140 None:intergenic
CTTTGTGGTGAAACTGGAAG+AGG 0.574937 4.4:-51415354 None:intergenic
GATGATGGCGACCGCAATTG+GGG 0.575879 4.4:+51415790 MS.gene044729:CDS
CCGTCAAGGTTAATGTTGGA+AGG 0.583449 4.4:-51415136 None:intergenic
TGCATGGAAGCCAGGCAAGA+AGG 0.591899 4.4:+51415300 MS.gene044729:CDS
ACCAGGAGCGATACGATCCA+TGG 0.592943 4.4:-51415434 None:intergenic
GGTTCAGTGGGACAAAGCTA+GGG 0.592996 4.4:-51415462 None:intergenic
TCACATCAAACTCACCAAGC+AGG 0.593385 4.4:+51415895 MS.gene044729:CDS
GCCATCATCAGAATCTAACT+CGG 0.598191 4.4:-51415776 None:intergenic
ACAAAGCTAGGGACGACACC+AGG 0.602101 4.4:-51415451 None:intergenic
GTATCCTTGATGAGGGTCCA+CGG 0.605875 4.4:+51415389 MS.gene044729:CDS
ACAACCGTGGACCCTCATCA+AGG 0.613072 4.4:-51415393 None:intergenic
ACTTGAAACCAGTTACGCAA+AGG 0.615229 4.4:+51415818 MS.gene044729:CDS
ATCCAACCAAAAGTAGGTCA+AGG 0.617189 4.4:+51415529 MS.gene044729:CDS
CCAAAAGTAGGTCAAGGCAT+AGG 0.620618 4.4:+51415535 MS.gene044729:CDS
GGTGAAACTGGAAGAGGTAA+CGG 0.623079 4.4:-51415348 None:intergenic
GTTGCACGTATCCTTGATGA+GGG 0.623154 4.4:+51415382 MS.gene044729:CDS
GGCCGAACTGTAGCTACTGA+AGG 0.624276 4.4:+51415931 MS.gene044729:CDS
ACTGTAGCTACTGAAGGTGT+GGG 0.628598 4.4:+51415937 MS.gene044729:CDS
TGTGCTTGCTGCCCAGAATG+CGG 0.637409 4.4:+51416026 MS.gene044729:CDS
CCATCATCAGAATCTAACTC+GGG 0.645117 4.4:-51415775 None:intergenic
GCGAGCGTATATCTCGTGCA+TGG 0.652041 4.4:+51415284 MS.gene044729:CDS
GAATAGGATCTTGCAACCAA+CGG 0.654985 4.4:-51415861 None:intergenic
GGTTAAACCCTCTTCAGACA+AGG 0.669126 4.4:-51415164 None:intergenic
ATTGAATCTCACGATCAACA+AGG 0.669685 4.4:-51415249 None:intergenic
CAGACAAGGTGAGACCGTCA+AGG 0.670109 4.4:-51415150 None:intergenic
TTTGGTTGGATGAATCCGAA+AGG 0.672828 4.4:-51415517 None:intergenic
TGGAAATTATCATACAACCG+TGG 0.719997 4.4:-51415406 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTAAATATGAAAAATT+GGG + chr4.4:51415703-51415722 MS.gene044729:intron 10.0%
!! GTAAATAAAAAAAAATTACA+GGG + chr4.4:51416488-51416507 MS.gene044729:intron 10.0%
!! TAAATAAAAAAAAATTACAG+GGG + chr4.4:51416489-51416508 MS.gene044729:intron 10.0%
!! TAACTTTAAATATGAAAAAT+TGG + chr4.4:51415702-51415721 MS.gene044729:intron 10.0%
!! AAAAAAAAAAAAATTTGCAG+GGG - chr4.4:51416320-51416339 None:intergenic 15.0%
!! AAATAAAAAAAAATTACAGG+GGG + chr4.4:51416490-51416509 MS.gene044729:intron 15.0%
!! CAAAAAAAAAAAAATTTGCA+GGG - chr4.4:51416321-51416340 None:intergenic 15.0%
!! GGTAAATAAAAAAAAATTAC+AGG + chr4.4:51416487-51416506 MS.gene044729:intron 15.0%
!! TCAAAAAAAAAAAAATTTGC+AGG - chr4.4:51416322-51416341 None:intergenic 15.0%
!! TTGACTTTAATAGATATTAT+GGG + chr4.4:51416635-51416654 MS.gene044729:intron 15.0%
!!! AAATAAAATTGGTTTTTGTT+TGG - chr4.4:51416393-51416412 None:intergenic 15.0%
!!! ATCAAAACATTTTTTTTTAC+AGG - chr4.4:51416353-51416372 None:intergenic 15.0%
!!! TCAAAACATTTTTTTTTACA+GGG - chr4.4:51416352-51416371 None:intergenic 15.0%
!!! TTGTTAAGTTATTCATTTTT+GGG - chr4.4:51416562-51416581 None:intergenic 15.0%
!!! TTTGACTTTAATAGATATTA+TGG + chr4.4:51416634-51416653 MS.gene044729:intron 15.0%
!!! TTTGTTAAGTTATTCATTTT+TGG - chr4.4:51416563-51416582 None:intergenic 15.0%
!! AAAAAAAAAAAATTTGCAGG+GGG - chr4.4:51416319-51416338 None:intergenic 20.0%
!!! CAAAACCAATTTTTTTTACA+GGG + chr4.4:51416463-51416482 MS.gene044729:intron 20.0%
!!! TCAAAACCAATTTTTTTTAC+AGG + chr4.4:51416462-51416481 MS.gene044729:intron 20.0%
!!! TTATTCATTTTTGGGTTAAT+AGG - chr4.4:51416554-51416573 None:intergenic 20.0%
! AAAAATCAATATGGTTCAGT+GGG - chr4.4:51415477-51415496 None:intergenic 25.0%
!!! AAACATTTTTTTTTACAGGG+AGG - chr4.4:51416349-51416368 None:intergenic 25.0%
!!! ACTGAACCATATTGATTTTT+GGG + chr4.4:51415477-51415496 MS.gene044729:CDS 25.0%
AATAAGACAGTATTCGAGAA+TGG - chr4.4:51415221-51415240 None:intergenic 30.0%
ATCTAATGATGACATACAAG+AGG + chr4.4:51416191-51416210 MS.gene044729:intron 30.0%
ATTCTCGAATACTGTCTTAT+TGG + chr4.4:51415220-51415239 MS.gene044729:CDS 30.0%
CAAAAATCAATATGGTTCAG+TGG - chr4.4:51415478-51415497 None:intergenic 30.0%
CTTGAACCCAAAAATCAATA+TGG - chr4.4:51415486-51415505 None:intergenic 30.0%
GAGGTAAAAACCTATTAAAC+CGG - chr4.4:51416270-51416289 None:intergenic 30.0%
GTCTTTATCTCCTGTAATAT+AGG + chr4.4:51416238-51416257 MS.gene044729:intron 30.0%
TACCTCCCTGTAAAAAAAAT+TGG - chr4.4:51416471-51416490 None:intergenic 30.0%
TCATTAGATTCACTTGAAAG+TGG - chr4.4:51416180-51416199 None:intergenic 30.0%
TGATAATTTCCATATTGCCA+TGG + chr4.4:51415417-51415436 MS.gene044729:CDS 30.0%
! GTTTTTACCTCCTGTAATAT+AGG + chr4.4:51416279-51416298 MS.gene044729:intron 30.0%
!! CGTTTTTGTTTGACCTATTA+GGG + chr4.4:51416433-51416452 MS.gene044729:intron 30.0%
!! GTTTTTGTTTGACCTATTAG+GGG + chr4.4:51416434-51416453 MS.gene044729:intron 30.0%
!! GTTTTTGTTTGGCCTATTAA+GGG - chr4.4:51416382-51416401 None:intergenic 30.0%
!! TCGTTTTTGTTTGACCTATT+AGG + chr4.4:51416432-51416451 MS.gene044729:intron 30.0%
!! TTTTTGTTTGACCTATTAGG+GGG + chr4.4:51416435-51416454 MS.gene044729:intron 30.0%
!! TTTTTGTTTGGCCTATTAAG+GGG - chr4.4:51416381-51416400 None:intergenic 30.0%
!!! AACCAATTTTTTTTACAGGG+AGG + chr4.4:51416466-51416485 MS.gene044729:intron 30.0%
!!! CACTGAACCATATTGATTTT+TGG + chr4.4:51415476-51415495 MS.gene044729:CDS 30.0%
AAAATTACAGGGGGAAAAAC+CGG + chr4.4:51416499-51416518 MS.gene044729:intron 35.0%
ATTGAATCTCACGATCAACA+AGG - chr4.4:51415252-51415271 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr4.4:51416248-51416267 MS.gene044729:intron 35.0%
CCTGTAATATAGGTCATTTC+CGG - chr4.4:51416267-51416248 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG + chr4.4:51416519-51416538 MS.gene044729:intron 35.0%
GAAATGACCTATATTACAGG+AGG - chr4.4:51416540-51416521 None:intergenic 35.0%
GAAATGACCTATATTACAGG+GGG + chr4.4:51416521-51416540 MS.gene044729:intron 35.0%
GATGACATACAAGAGGAAAT+TGG + chr4.4:51416198-51416217 MS.gene044729:intron 35.0%
GGAAATGACCTATATTACAG+GGG + chr4.4:51416520-51416539 MS.gene044729:intron 35.0%
GTGCTAGCTAAAAAAGGTAA+AGG + chr4.4:51416048-51416067 MS.gene044729:CDS 35.0%
TAGGTCATTTCCGGTTTAAT+AGG + chr4.4:51416257-51416276 MS.gene044729:intron 35.0%
TGGAAATTATCATACAACCG+TGG - chr4.4:51415409-51415428 None:intergenic 35.0%
! TCTTTTACCCCCTGTAATAT+AGG - chr4.4:51416531-51416550 None:intergenic 35.0%
! TTTGATTTACCCCCCTTAAT+AGG + chr4.4:51416367-51416386 MS.gene044729:intron 35.0%
!! ATTGGCTCGGATTTGAATAT+AGG + chr4.4:51416216-51416235 MS.gene044729:intron 35.0%
!! GGTTTTTGTTTGGCCTATTA+AGG - chr4.4:51416383-51416402 None:intergenic 35.0%
!! TTTTGTTTGGCCTATTAAGG+GGG - chr4.4:51416380-51416399 None:intergenic 35.0%
!!! GATTTTTGGGTTCAAGTTCA+CGG + chr4.4:51415490-51415509 MS.gene044729:CDS 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG - chr4.4:51416449-51416468 None:intergenic 35.0%
AAAATTTGCAGGGGGAAAAC+CGG - chr4.4:51416311-51416330 None:intergenic 40.0%
AAACCAGTTACGCAAAGGTT+TGG + chr4.4:51415823-51415842 MS.gene044729:CDS 40.0%
AATGGCAGCATTATCAGGTT+CGG - chr4.4:51415203-51415222 None:intergenic 40.0%
ACTTGAAACCAGTTACGCAA+AGG + chr4.4:51415818-51415837 MS.gene044729:CDS 40.0%
AGATATACGCTCGCACAAAT+AGG - chr4.4:51415278-51415297 None:intergenic 40.0%
ATCCAACCAAAAGTAGGTCA+AGG + chr4.4:51415529-51415548 MS.gene044729:CDS 40.0%
CATACAAGAGGAAATTGGCT+CGG + chr4.4:51416203-51416222 MS.gene044729:intron 40.0%
CCATCATCAGAATCTAACTC+GGG - chr4.4:51415778-51415797 None:intergenic 40.0%
CCGGAAATGACCTATATTAC+AGG + chr4.4:51416518-51416537 MS.gene044729:intron 40.0%
CCGGAAATGACCTATATTAC+AGG - chr4.4:51416537-51416518 None:intergenic 40.0%
CCTTCCAACATTAACCTTGA+CGG + chr4.4:51415136-51415155 MS.gene044729:CDS 40.0%
GAATAGGATCTTGCAACCAA+CGG - chr4.4:51415864-51415883 None:intergenic 40.0%
GCCATCATCAGAATCTAACT+CGG - chr4.4:51415779-51415798 None:intergenic 40.0%
GGATTCATCCAACCAAAAGT+AGG + chr4.4:51415523-51415542 MS.gene044729:CDS 40.0%
GTTTGATGTGACATAGAAGC+AGG - chr4.4:51415886-51415905 None:intergenic 40.0%
TGCTTCCAAAATACATCTGC+TGG + chr4.4:51416080-51416099 MS.gene044729:CDS 40.0%
TGTGACATAGAAGCAGGAAT+AGG - chr4.4:51415880-51415899 None:intergenic 40.0%
TTTGGTTGGATGAATCCGAA+AGG - chr4.4:51415520-51415539 None:intergenic 40.0%
TTTGTTTGGCCTATTAAGGG+GGG - chr4.4:51416379-51416398 None:intergenic 40.0%
! AATGCGGTGCTAGCTAAAAA+AGG + chr4.4:51416042-51416061 MS.gene044729:CDS 40.0%
! AATTGGGTGTGTTTTGTCAC+AGG + chr4.4:51415719-51415738 MS.gene044729:intron 40.0%
! AGAAGCCAGCAGATGTATTT+TGG - chr4.4:51416088-51416107 None:intergenic 40.0%
! AGGTTCGGTTTCAAGGTTAA+GGG - chr4.4:51415188-51415207 None:intergenic 40.0%
! CATTATCAGGTTCGGTTTCA+AGG - chr4.4:51415195-51415214 None:intergenic 40.0%
!! AGTAACAAAAGCACCGTTTG+TGG - chr4.4:51415680-51415699 None:intergenic 40.0%
!!! ACTCACCACTCTTTTTTCAG+TGG - chr4.4:51415652-51415671 None:intergenic 40.0%
!!! CTCACCACTCTTTTTTCAGT+GGG - chr4.4:51415651-51415670 None:intergenic 40.0%
AACTGTAGCTACTGAAGGTG+TGG + chr4.4:51415936-51415955 MS.gene044729:CDS 45.0%
ATCTTGCAACCAACGGTTTG+TGG - chr4.4:51415857-51415876 None:intergenic 45.0%
CAAGGCATAGGAAGCTTCTT+AGG + chr4.4:51415547-51415566 MS.gene044729:CDS 45.0%
CACCTTCAGTAGCTACAGTT+CGG - chr4.4:51415936-51415955 None:intergenic 45.0%
CCAAAAGTAGGTCAAGGCAT+AGG + chr4.4:51415535-51415554 MS.gene044729:CDS 45.0%
CCCGAGTTAGATTCTGATGA+TGG + chr4.4:51415775-51415794 MS.gene044729:CDS 45.0%
CCGTCAAGGTTAATGTTGGA+AGG - chr4.4:51415139-51415158 None:intergenic 45.0%
CGATACGATCCATGGCAATA+TGG - chr4.4:51415429-51415448 None:intergenic 45.0%
CTGCTTCCAAGTCATCCTTT+GGG + chr4.4:51416135-51416154 MS.gene044729:intron 45.0%
CTGTCCCACTGAAAAAAGAG+TGG + chr4.4:51415644-51415663 MS.gene044729:CDS 45.0%
CTTTGTGGTGAAACTGGAAG+AGG - chr4.4:51415357-51415376 None:intergenic 45.0%
GAGACCGTCAAGGTTAATGT+TGG - chr4.4:51415143-51415162 None:intergenic 45.0%
GGTGAAACTGGAAGAGGTAA+CGG - chr4.4:51415351-51415370 None:intergenic 45.0%
GGTTAAACCCTCTTCAGACA+AGG - chr4.4:51415167-51415186 None:intergenic 45.0%
GTTCCAAACCTTTGCGTAAC+TGG - chr4.4:51415829-51415848 None:intergenic 45.0%
GTTGCACGTATCCTTGATGA+GGG + chr4.4:51415382-51415401 MS.gene044729:CDS 45.0%
TATAGACCAAATCGCTCTGC+AGG + chr4.4:51416662-51416681 MS.gene044729:intron 45.0%
TCACATCAAACTCACCAAGC+AGG + chr4.4:51415895-51415914 MS.gene044729:CDS 45.0%
TCGAGAATGGCAGCATTATC+AGG - chr4.4:51415208-51415227 None:intergenic 45.0%
TGCTTCCAAGTCATCCTTTG+GGG + chr4.4:51416136-51416155 MS.gene044729:intron 45.0%
TGTTGCACGTATCCTTGATG+AGG + chr4.4:51415381-51415400 MS.gene044729:CDS 45.0%
TTTAGCTAGCACCGCATTCT+GGG - chr4.4:51416040-51416059 None:intergenic 45.0%
! ACTGTAGCTACTGAAGGTGT+GGG + chr4.4:51415937-51415956 MS.gene044729:CDS 45.0%
! CAGGTTCGGTTTCAAGGTTA+AGG - chr4.4:51415189-51415208 None:intergenic 45.0%
! CCTATGCCTTGACCTACTTT+TGG - chr4.4:51415538-51415557 None:intergenic 45.0%
! TGTCACAGGTGTGGATTGAT+TGG + chr4.4:51415733-51415752 MS.gene044729:intron 45.0%
!! CATCGACTTTGTGGTGAAAC+TGG - chr4.4:51415363-51415382 None:intergenic 45.0%
!! TACGTGCAACATCGACTTTG+TGG - chr4.4:51415372-51415391 None:intergenic 45.0%
!! TGCCTTGACCTACTTTTGGT+TGG - chr4.4:51415534-51415553 None:intergenic 45.0%
!! TTTTAGCTAGCACCGCATTC+TGG - chr4.4:51416041-51416060 None:intergenic 45.0%
!! TGAAAAAATAAAAATAAAAT+TGG - chr4.4:51416404-51416423 None:intergenic 5.0%
AGCGACTCTGACACGCATAT+TGG - chr4.4:51415614-51415633 None:intergenic 50.0%
ATATCTCGTGCATGGAAGCC+AGG + chr4.4:51415292-51415311 MS.gene044729:CDS 50.0%
CAAGTTCACGGTCTGCCTTT+CGG + chr4.4:51415502-51415521 MS.gene044729:CDS 50.0%
CCTGCTTCCAAGTCATCCTT+TGG + chr4.4:51416134-51416153 MS.gene044729:intron 50.0%
GGTCTCACCTTGTCTGAAGA+GGG + chr4.4:51415157-51415176 MS.gene044729:CDS 50.0%
GGTTCAGTGGGACAAAGCTA+GGG - chr4.4:51415465-51415484 None:intergenic 50.0%
GTATCCTTGATGAGGGTCCA+CGG + chr4.4:51415389-51415408 MS.gene044729:CDS 50.0%
TCAAGTCAGCTCCCCAATTG+CGG - chr4.4:51415804-51415823 None:intergenic 50.0%
TCACTTGAAAGTGGAGCAGC+AGG - chr4.4:51416171-51416190 None:intergenic 50.0%
TGGTTCAGTGGGACAAAGCT+AGG - chr4.4:51415466-51415485 None:intergenic 50.0%
! CCAAAGGATGACTTGGAAGC+AGG - chr4.4:51416137-51416156 None:intergenic 50.0%
! GCTAGTAGCTGAAGTACCTG+TGG - chr4.4:51416115-51416134 None:intergenic 50.0%
! GGTGTGTTTTGTCACAGGTG+TGG + chr4.4:51415724-51415743 MS.gene044729:intron 50.0%
!! CAAAAGCACCGTTTGTGGCA+CGG - chr4.4:51415675-51415694 None:intergenic 50.0%
!! TGATGATGGCGACCGCAATT+GGG + chr4.4:51415789-51415808 MS.gene044729:CDS 50.0%
ACAAAGCTAGGGACGACACC+AGG - chr4.4:51415454-51415473 None:intergenic 55.0%
ACAACCGTGGACCCTCATCA+AGG - chr4.4:51415396-51415415 None:intergenic 55.0%
ACCAGGAGCGATACGATCCA+TGG - chr4.4:51415437-51415456 None:intergenic 55.0%
CAACAGAAGCAGCACCTGCT+TGG - chr4.4:51415912-51415931 None:intergenic 55.0%
CAACCAACGGTTTGTGGCAG+CGG - chr4.4:51415851-51415870 None:intergenic 55.0%
CAGACAAGGTGAGACCGTCA+AGG - chr4.4:51415153-51415172 None:intergenic 55.0%
CCAAGCCCCAAAGGATGACT+TGG - chr4.4:51416144-51416163 None:intergenic 55.0%
CGGTCTCACCTTGTCTGAAG+AGG + chr4.4:51415156-51415175 MS.gene044729:CDS 55.0%
GCGAGCGTATATCTCGTGCA+TGG + chr4.4:51415284-51415303 MS.gene044729:CDS 55.0%
GGCCGAACTGTAGCTACTGA+AGG + chr4.4:51415931-51415950 MS.gene044729:CDS 55.0%
GTGATCGTGACCTTCTTGCC+TGG - chr4.4:51415313-51415332 None:intergenic 55.0%
TGCATGGAAGCCAGGCAAGA+AGG + chr4.4:51415300-51415319 MS.gene044729:CDS 55.0%
TGGTGAGTCCGTGCCACAAA+CGG + chr4.4:51415664-51415683 MS.gene044729:intron 55.0%
! GATGATGGCGACCGCAATTG+GGG + chr4.4:51415790-51415809 MS.gene044729:CDS 55.0%
! TGTGCTTGCTGCCCAGAATG+CGG + chr4.4:51416026-51416045 MS.gene044729:CDS 55.0%
!! CAAGCAGGTGCTGCTTCTGT+TGG + chr4.4:51415910-51415929 MS.gene044729:CDS 55.0%
!! CCAAGTCATCCTTTGGGGCT+TGG + chr4.4:51416141-51416160 MS.gene044729:intron 55.0%
!! CTGATGATGGCGACCGCAAT+TGG + chr4.4:51415788-51415807 MS.gene044729:CDS 55.0%
!! CTGCTGGCTTCTTCTTCCAC+AGG + chr4.4:51416096-51416115 MS.gene044729:CDS 55.0%
GAACCGCTGCCACAAACCGT+TGG + chr4.4:51415845-51415864 MS.gene044729:CDS 60.0%
GCAGGTAAGCCAAGCCCCAA+AGG - chr4.4:51416153-51416172 None:intergenic 60.0%
GCCATGGATCGTATCGCTCC+TGG + chr4.4:51415433-51415452 MS.gene044729:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 51415130 51416689 51415130 ID=MS.gene044729
chr4.4 mRNA 51415130 51416689 51415130 ID=MS.gene044729.t1;Parent=MS.gene044729
chr4.4 exon 51415130 51415665 51415130 ID=MS.gene044729.t1.exon1;Parent=MS.gene044729.t1
chr4.4 CDS 51415130 51415665 51415130 ID=cds.MS.gene044729.t1;Parent=MS.gene044729.t1
chr4.4 exon 51415741 51416117 51415741 ID=MS.gene044729.t1.exon2;Parent=MS.gene044729.t1
chr4.4 CDS 51415741 51416117 51415741 ID=cds.MS.gene044729.t1;Parent=MS.gene044729.t1
chr4.4 exon 51416667 51416689 51416667 ID=MS.gene044729.t1.exon3;Parent=MS.gene044729.t1
chr4.4 CDS 51416667 51416689 51416667 ID=cds.MS.gene044729.t1;Parent=MS.gene044729.t1
Gene Sequence

>MS.gene044729

ATGGATCCTTCCAACATTAACCTTGACGGTCTCACCTTGTCTGAAGAGGGTTTAACCCTTAACCTTGAAACCGAACCTGATAATGCTGCCATTCTCGAATACTGTCTTATTGGTCGAGTCCTTGTTGATCGTGAGATTCAATTTGCCTATTTGTGCGAGCGTATATCTCGTGCATGGAAGCCAGGCAAGAAGGTCACGATCACTAAATCAGTGTTTGACCGTTACCTCTTCCAGTTTCACCACAAAGTCGATGTTGCACGTATCCTTGATGAGGGTCCACGGTTGTATGATAATTTCCATATTGCCATGGATCGTATCGCTCCTGGTGTCGTCCCTAGCTTTGTCCCACTGAACCATATTGATTTTTGGGTTCAAGTTCACGGTCTGCCTTTCGGATTCATCCAACCAAAAGTAGGTCAAGGCATAGGAAGCTTCTTAGGCACTTTCAAAGCATATGATAATCGCAACTCAATTCATAGTTCCAATATGCGTGTCAGAGTCGCTATTGATGTCACTGTCCCACTGAAAAAAGAGTGGTGAGTCCGTGCCACAAACGGTGCTTTTGTTACTGTTAACTTTAAATATGAAAAATTGGGTGTGTTTTGTCACAGGTGTGGATTGATTGGTCATACTGATAAAGTGTGTCCCGAGTTAGATTCTGATGATGGCGACCGCAATTGGGGAGCTGACTTGAAACCAGTTACGCAAAGGTTTGGAACCGCTGCCACAAACCGTTGGTTGCAAGATCCTATTCCTGCTTCTATGTCACATCAAACTCACCAAGCAGGTGCTGCTTCTGTTGGCCGAACTGTAGCTACTGAAGGTGTGGGAAATTTTGCAACTTTCAATGATCGTATGCTCACTCTTCAGATGCAACTTACTGCTATGCAACAAGATGTGCTTGCTGCCCAGAATGCGGTGCTAGCTAAAAAAGGTAAAGGTGCAAGTTCTGCTTCCAAAATACATCTGCTGGCTTCTTCTTCCACAGGTACTTCAGCTACTAGCCTGCTTCCAAGTCATCCTTTGGGGCTTGGCTTACCTGCTGCTCCACTTTCAAGTGAATCTAATGATGACATACAAGAGGAAATTGGCTCGGATTTGAATATAGGTCTTTATCTCCTGTAATATAGGTCATTTCCGGTTTAATAGGTTTTTACCTCCTGTAATATAGGTCATTTCCGGTTTTCCCCCTGCAAATTTTTTTTTTTTTGATTTACCTCCCTGTAAAAAAAAATGTTTTGATTTACCCCCCTTAATAGGCCAAACAAAAACCAATTTTATTTTTATTTTTTCAAGAAATTTTCGTTTTTGTTTGACCTATTAGGGGGTAAATCAAAACCAATTTTTTTTACAGGGAGGTAAATAAAAAAAAATTACAGGGGGAAAAACCGGAAATGACCTATATTACAGGGGGTAAAAGACCTATTAACCCAAAAATGAATAACTTAACAAAAGTTCTATAATTTGAAACTTACTTTTATATTTAATTTTAAAAACTCTATCATTTGACTTTAATAGATATTATGGGTAATTATAGACCAAATCGCTCTGCAGGAATGA
Protein sequence

>MS.gene044729.t1

MDPSNINLDGLTLSEEGLTLNLETEPDNAAILEYCLIGRVLVDREIQFAYLCERISRAWKPGKKVTITKSVFDRYLFQFHHKVDVARILDEGPRLYDNFHIAMDRIAPGVVPSFVPLNHIDFWVQVHGLPFGFIQPKVGQGIGSFLGTFKAYDNRNSIHSSNMRVRVAIDVTVPLKKEWCGLIGHTDKVCPELDSDDGDRNWGADLKPVTQRFGTAATNRWLQDPIPASMSHQTHQAGAASVGRTVATEGVGNFATFNDRMLTLQMQLTAMQQDVLAAQNAVLAKKGKGASSASKIHLLASSSTDQIALQE