Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29406.t1 | AES70414.1 | 52.6 | 346 | 95 | 4 | 47 | 389 | 1 | 280 | 4.80E-89 | 338.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29406.t1 | G7J017 | 52.6 | 346 | 95 | 4 | 47 | 389 | 1 | 280 | 3.5e-89 | 338.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29406.t1 | MTR_3g053920 | 52.601 | 346 | 95 | 4 | 47 | 389 | 1 | 280 | 2.16e-111 | 330 |
MS.gene29406.t1 | MTR_2g061500 | 75.194 | 129 | 32 | 0 | 47 | 175 | 1 | 129 | 3.16e-68 | 214 |
MS.gene29406.t1 | MTR_7g011710 | 81.818 | 88 | 16 | 0 | 101 | 188 | 1 | 88 | 1.50e-46 | 159 |
MS.gene29406.t1 | MTR_4g103530 | 66.337 | 101 | 33 | 1 | 101 | 201 | 1 | 100 | 3.90e-42 | 148 |
MS.gene29406.t1 | MTR_4g103530 | 46.875 | 64 | 34 | 0 | 297 | 360 | 119 | 182 | 7.82e-11 | 61.6 |
MS.gene29406.t1 | MTR_8g463110 | 70.339 | 118 | 32 | 1 | 335 | 449 | 1 | 118 | 1.27e-35 | 140 |
MS.gene29406.t1 | MTR_6g033215 | 35.260 | 173 | 110 | 1 | 75 | 245 | 122 | 294 | 2.58e-34 | 130 |
MS.gene29406.t1 | MTR_0010s0370 | 36.207 | 174 | 101 | 6 | 57 | 223 | 7 | 177 | 5.21e-28 | 110 |
MS.gene29406.t1 | MTR_0010s0350 | 36.207 | 174 | 101 | 6 | 57 | 223 | 7 | 177 | 5.21e-28 | 110 |
MS.gene29406.t1 | MTR_7g106180 | 26.000 | 150 | 103 | 3 | 78 | 221 | 19 | 166 | 2.59e-14 | 72.8 |
MS.gene29406.t1 | MTR_1g036720 | 30.769 | 104 | 70 | 1 | 57 | 158 | 7 | 110 | 1.77e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29406.t1 | AT2G17920 | 27.907 | 215 | 145 | 5 | 54 | 262 | 9 | 219 | 1.61e-18 | 86.7 |
MS.gene29406.t1 | AT2G41590 | 27.439 | 164 | 115 | 2 | 101 | 262 | 58 | 219 | 1.29e-16 | 81.6 |
MS.gene29406.t1 | AT5G18636 | 27.442 | 215 | 146 | 4 | 54 | 262 | 9 | 219 | 3.37e-16 | 80.5 |
MS.gene29406.t1 | AT5G25200 | 27.442 | 215 | 146 | 4 | 54 | 262 | 9 | 219 | 3.40e-16 | 80.5 |
MS.gene29406.t1 | AT3G57587 | 28.378 | 148 | 102 | 2 | 117 | 262 | 74 | 219 | 3.47e-16 | 80.5 |
MS.gene29406.t1 | AT2G02103 | 27.907 | 215 | 145 | 4 | 54 | 262 | 9 | 219 | 5.71e-16 | 80.1 |
MS.gene29406.t1 | AT5G36228 | 27.083 | 192 | 136 | 2 | 82 | 271 | 39 | 228 | 5.93e-16 | 79.7 |
MS.gene29406.t1 | AT3G31430 | 26.374 | 182 | 128 | 3 | 82 | 261 | 134 | 311 | 2.86e-14 | 74.3 |
MS.gene29406.t1 | AT2G13450 | 25.543 | 184 | 129 | 4 | 82 | 261 | 39 | 218 | 7.43e-14 | 73.6 |
MS.gene29406.t1 | AT3G47920 | 25.000 | 148 | 107 | 2 | 117 | 262 | 3 | 148 | 1.01e-12 | 69.3 |
Find 144 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTCAATTTCATCACAAAA+TGG | 0.275930 | 3.3:-31657953 | MS.gene29406:CDS |
CAGACTCGGTGGCTAGGTTC+AGG | 0.306454 | 3.3:+31658124 | None:intergenic |
TCGGTAAGAGATAGAGAAAC+AGG | 0.309778 | 3.3:+31658207 | None:intergenic |
ACCTGAACCATTTGGACATC+TGG | 0.323453 | 3.3:-31657834 | MS.gene29406:CDS |
CAGGTTCACGGTCTTCCTTT+TGG | 0.325576 | 3.3:-31657808 | MS.gene29406:CDS |
CTTAGCCGACCGTGAGATTC+AGG | 0.334402 | 3.3:-31658061 | MS.gene29406:CDS |
GACTCCTCAGAGTTGGTATT+AGG | 0.336786 | 3.3:+31657127 | None:intergenic |
TACGGGCAGCATTAGGCTTC+AGG | 0.352023 | 3.3:+31657482 | None:intergenic |
TCAGATTGTGTTTCACGGTT+AGG | 0.362563 | 3.3:+31658276 | None:intergenic |
GCAGCATTAGGCTTCAGGTC+AGG | 0.367623 | 3.3:+31657487 | None:intergenic |
ATCCTTGATCACTGTTTGAT+TGG | 0.375534 | 3.3:-31658090 | MS.gene29406:CDS |
TTGGTGCTTGGATCACCTGC+TGG | 0.383837 | 3.3:-31657157 | MS.gene29406:CDS |
ACGATCGAAACACGCTTGCC+TGG | 0.389839 | 3.3:+31658000 | None:intergenic |
CAGATTGTGTTTCACGGTTA+GGG | 0.390851 | 3.3:+31658277 | None:intergenic |
AGCCATACGCTCGCTGAAAT+AGG | 0.391985 | 3.3:+31658035 | None:intergenic |
CCCAGATGTCCAAATGGTTC+AGG | 0.397477 | 3.3:+31657833 | None:intergenic |
CCTTCTCACCTCAATATTGC+TGG | 0.397709 | 3.3:-31658174 | MS.gene29406:CDS |
CACGACATAGGTAGCTTTCT+AGG | 0.402316 | 3.3:-31657763 | MS.gene29406:CDS |
GAAACAGGGAGGAAGACAAT+AGG | 0.405034 | 3.3:+31658222 | None:intergenic |
GTTGGCCGCCCCTTGGTGCT+TGG | 0.411391 | 3.3:-31657169 | MS.gene29406:CDS |
AATGGCAGGCCTTGATGATC+AGG | 0.412415 | 3.3:-31656921 | MS.gene29406:CDS |
GACATCTGGGTCCAGGTTCA+CGG | 0.413519 | 3.3:-31657820 | MS.gene29406:CDS |
CTCTATCGACCTGAACCATT+TGG | 0.415630 | 3.3:-31657842 | MS.gene29406:CDS |
AAACCAATACGGGCAGCATT+AGG | 0.417335 | 3.3:+31657475 | None:intergenic |
TCGGCTTCAAATTTGATTGT+TGG | 0.420945 | 3.3:-31657187 | MS.gene29406:CDS |
AAGCCTAATGCTGCCCGTAT+TGG | 0.422074 | 3.3:-31657478 | MS.gene29406:CDS |
CCTATGTCGTGACCAACATT+TGG | 0.425346 | 3.3:+31657775 | None:intergenic |
TCAAACGCATATAGGTACTA+TGG | 0.426389 | 3.3:+31657707 | None:intergenic |
ATGGCTCGTGCTTGGAAGCC+AGG | 0.426942 | 3.3:-31658018 | MS.gene29406:CDS |
ATGATGATGGTGTTCGCAAT+TGG | 0.426984 | 3.3:-31657513 | MS.gene29406:CDS |
TGTTTCAGGTGCGGTTTGCT+TGG | 0.429250 | 3.3:-31657577 | MS.gene29406:CDS |
AAACAGGGAGGAAGACAATA+GGG | 0.434502 | 3.3:+31658223 | None:intergenic |
ACGGACTTTCAAACGCATAT+AGG | 0.445879 | 3.3:+31657699 | None:intergenic |
TACCACTAGGAGGAGAGTTT+CGG | 0.448317 | 3.3:+31657368 | None:intergenic |
ACGGACCGTCATCGAGAATA+CGG | 0.448638 | 3.3:+31657923 | None:intergenic |
TATGCTGGTGTCTCTTCTGC+TGG | 0.452739 | 3.3:-31657391 | MS.gene29406:CDS |
CCACTCCTTTGAAGAAAGAA+TGG | 0.453354 | 3.3:-31657666 | MS.gene29406:CDS |
TGATGATGGTGTTCGCAATT+GGG | 0.461183 | 3.3:-31657512 | MS.gene29406:CDS |
CAAAAGGAAGACCGTGAACC+TGG | 0.461333 | 3.3:+31657809 | None:intergenic |
CGCGGCACAACAGAAGGGAT+TGG | 0.461403 | 3.3:+31657424 | None:intergenic |
GATGAAATTGAAACAGAAAT+CGG | 0.463191 | 3.3:+31657962 | None:intergenic |
GATAGAGTTACGGACATCAT+AGG | 0.469134 | 3.3:+31657729 | None:intergenic |
AGACTCGGTGGCTAGGTTCA+GGG | 0.469866 | 3.3:+31658125 | None:intergenic |
TCTATCTCTTACCGATTCCA+TGG | 0.471695 | 3.3:-31658199 | MS.gene29406:CDS |
GCGGCACAACAGAAGGGATT+GGG | 0.475065 | 3.3:+31657425 | None:intergenic |
TATTAGCAGCAAAACCAATA+CGG | 0.478257 | 3.3:+31657464 | None:intergenic |
CAGACTCAGATTGTGTTTCA+CGG | 0.481156 | 3.3:+31658271 | None:intergenic |
CAGCATTAGGCTTCAGGTCA+GGG | 0.485216 | 3.3:+31657488 | None:intergenic |
TGGTCTCACCCTTGCTGAAG+AGG | 0.487281 | 3.3:-31658154 | MS.gene29406:CDS |
GGTCTCACCCTTGCTGAAGA+GGG | 0.487511 | 3.3:-31658153 | MS.gene29406:CDS |
GAGGAGTCTCAAGATGCTAC+TGG | 0.487924 | 3.3:-31657112 | MS.gene29406:CDS |
TGCCTATTTCAGCGAGCGTA+TGG | 0.489265 | 3.3:-31658037 | MS.gene29406:CDS |
TTTGATTGTTGGCCGCCCCT+TGG | 0.490362 | 3.3:-31657176 | MS.gene29406:CDS |
TACTCCAACTCGAACAACTC+CGG | 0.491131 | 3.3:+31657535 | None:intergenic |
ACTTTCCATTCTTTCTTCAA+AGG | 0.491536 | 3.3:+31657661 | None:intergenic |
CCATTTGGACATCTGGGTCC+AGG | 0.493863 | 3.3:-31657827 | MS.gene29406:CDS |
TTGCCCGGAGTTGTTCGAGT+TGG | 0.498205 | 3.3:-31657539 | MS.gene29406:CDS |
TGGTTCAGGTCGATAGAGGC+AGG | 0.498541 | 3.3:+31657847 | None:intergenic |
CCATTCTTTCTTCAAAGGAG+TGG | 0.499164 | 3.3:+31657666 | None:intergenic |
TGTTGGCGCGGCACAACAGA+AGG | 0.501754 | 3.3:+31657418 | None:intergenic |
GCGAGCGTATGGCTCGTGCT+TGG | 0.503834 | 3.3:-31658026 | MS.gene29406:CDS |
CAAATGGTTCAGGTCGATAG+AGG | 0.510517 | 3.3:+31657843 | None:intergenic |
TTTGGTTGAATGCAGCCAAA+AGG | 0.511595 | 3.3:+31657793 | None:intergenic |
CAGCAAGTAGATCATGTTTG+AGG | 0.515254 | 3.3:+31657287 | None:intergenic |
TAGGAACAAATGTTAGTCAT+GGG | 0.515296 | 3.3:-31656997 | MS.gene29406:CDS |
CGATAATCTCCACATCGTAA+TGG | 0.517010 | 3.3:-31657893 | MS.gene29406:CDS |
AGGTACTATGGATAGAGTTA+CGG | 0.517799 | 3.3:+31657719 | None:intergenic |
CCTGGACCCAGATGTCCAAA+TGG | 0.518153 | 3.3:+31657827 | None:intergenic |
GGCTGCATTCAACCAAATGT+TGG | 0.520543 | 3.3:-31657787 | MS.gene29406:CDS |
TTCTTCTTCTACAGGTAACT+CGG | 0.521316 | 3.3:-31657206 | MS.gene29406:CDS |
ACACACTGACAAGGTTTGCC+CGG | 0.528306 | 3.3:-31657554 | MS.gene29406:CDS |
CCAAATGTTGGTCACGACAT+AGG | 0.530107 | 3.3:-31657775 | MS.gene29406:CDS |
GTTTGATGACACTGATGTAA+TGG | 0.531460 | 3.3:-31656939 | MS.gene29406:CDS |
CTGAACTGAAGAAGAGAAAG+AGG | 0.535515 | 3.3:-31657087 | MS.gene29406:CDS |
GGCCAATCAAACAGTGATCA+AGG | 0.536687 | 3.3:+31658088 | None:intergenic |
GTATTAGGAAACGGTCCAGC+AGG | 0.537381 | 3.3:+31657142 | None:intergenic |
GGACAACACCGGGTTGCATA+CGG | 0.540333 | 3.3:+31657869 | None:intergenic |
ATAGGAACAAATGTTAGTCA+TGG | 0.541273 | 3.3:-31656998 | MS.gene29406:CDS |
GAAGAAGAGAAAGAGGATGC+TGG | 0.542242 | 3.3:-31657080 | MS.gene29406:CDS |
CTAGCCTCATTTACCTAGGC+AGG | 0.542385 | 3.3:+31656898 | None:intergenic |
ATGTTTCAGACTCGGTGGCT+AGG | 0.544692 | 3.3:+31658118 | None:intergenic |
CTTGATGATCAGGCCTGCCT+AGG | 0.545915 | 3.3:-31656911 | MS.gene29406:CDS |
GCAGGTGATCCAAGCACCAA+GGG | 0.551957 | 3.3:+31657160 | None:intergenic |
AGCAAGTAGATCATGTTTGA+GGG | 0.552412 | 3.3:+31657288 | None:intergenic |
TCAGAGTTGGTATTAGGAAA+CGG | 0.553022 | 3.3:+31657133 | None:intergenic |
GTGAGAAGGATCCATGGAAT+CGG | 0.553139 | 3.3:+31658188 | None:intergenic |
TTCGAGTTGGAGTATGATGA+TGG | 0.553333 | 3.3:-31657526 | MS.gene29406:CDS |
ATTAGCAGCAAAACCAATAC+GGG | 0.555064 | 3.3:+31657465 | None:intergenic |
CAGGCCTGCCTAGGTAAATG+AGG | 0.555791 | 3.3:-31656902 | None:intergenic |
GTCAAAGCAAAACGTGACTC+AGG | 0.555861 | 3.3:-31657253 | MS.gene29406:CDS |
AAGGAGTGGTGACATTAATA+CGG | 0.558516 | 3.3:+31657680 | None:intergenic |
TGGAAAGTCCGCGTCAGTAA+TGG | 0.560762 | 3.3:-31657646 | MS.gene29406:CDS |
CCGCGCCAACATGTTTATGC+TGG | 0.561526 | 3.3:-31657406 | MS.gene29406:CDS |
GGGTTAAACCCTCTTCAGCA+AGG | 0.563127 | 3.3:+31658145 | None:intergenic |
ATCTTGAGACTCCTCAGAGT+TGG | 0.563156 | 3.3:+31657120 | None:intergenic |
ACTCCAACTCGAACAACTCC+GGG | 0.565052 | 3.3:+31657536 | None:intergenic |
CCAGCAATATTGAGGTGAGA+AGG | 0.566066 | 3.3:+31658174 | None:intergenic |
CCTGAACCATTTGGACATCT+GGG | 0.566438 | 3.3:-31657833 | MS.gene29406:CDS |
GAGTTACCTGTAGAAGAAGA+AGG | 0.567956 | 3.3:+31657208 | None:intergenic |
GGGTGAGACCAGCAATATTG+AGG | 0.568160 | 3.3:+31658166 | None:intergenic |
AGGATGCTGGCTCTTCAGAA+TGG | 0.570182 | 3.3:-31657067 | MS.gene29406:CDS |
CTAGGCAGGCCTGATCATCA+AGG | 0.575743 | 3.3:+31656912 | None:intergenic |
GATTGTCAACAGCAAGCATA+CGG | 0.578956 | 3.3:+31657320 | None:intergenic |
CGGACCGTCATCGAGAATAC+GGG | 0.590350 | 3.3:+31657924 | None:intergenic |
ATTGAGGTGAGAAGGATCCA+TGG | 0.594735 | 3.3:+31658182 | None:intergenic |
GATGATGGTGTTCGCAATTG+GGG | 0.596979 | 3.3:-31657511 | MS.gene29406:CDS |
AGCAGGTGATCCAAGCACCA+AGG | 0.598268 | 3.3:+31657159 | None:intergenic |
CAAACAGTGATCAAGGATGG+TGG | 0.603272 | 3.3:+31658095 | None:intergenic |
ATAGAGGCAGGGACAACACC+GGG | 0.603779 | 3.3:+31657859 | None:intergenic |
GATGGTGGATGTTTCAGACT+CGG | 0.616645 | 3.3:+31658110 | None:intergenic |
AACAAATGTTAGTCATGGGG+GGG | 0.619233 | 3.3:-31656993 | MS.gene29406:CDS |
CGGTAAGAGATAGAGAAACA+GGG | 0.623032 | 3.3:+31658208 | None:intergenic |
AATCAAACAGTGATCAAGGA+TGG | 0.623412 | 3.3:+31658092 | None:intergenic |
GGCAGCCTGAATCTCACGGT+CGG | 0.624448 | 3.3:+31658056 | None:intergenic |
AATAGGCAGCCTGAATCTCA+CGG | 0.627231 | 3.3:+31658052 | None:intergenic |
AAGCAGACAATAGTTGACAT+TGG | 0.628524 | 3.3:+31658321 | None:intergenic |
TTTGCTTGGACACACTGACA+AGG | 0.630531 | 3.3:-31657563 | MS.gene29406:CDS |
GTGATCCAAGCACCAAGGGG+CGG | 0.631081 | 3.3:+31657164 | None:intergenic |
GATGACACTGATGTAATGGC+AGG | 0.632333 | 3.3:-31656935 | MS.gene29406:CDS |
GGTTAAACCCTCTTCAGCAA+GGG | 0.635778 | 3.3:+31658146 | None:intergenic |
AGGAACAAATGTTAGTCATG+GGG | 0.636254 | 3.3:-31656996 | MS.gene29406:CDS |
GTATTCTCGATGACGGTCCG+TGG | 0.636653 | 3.3:-31657921 | MS.gene29406:CDS |
GGCCGAAACTCTCCTCCTAG+TGG | 0.636967 | 3.3:-31657370 | MS.gene29406:CDS |
GTAATGGACCGTATGCAACC+CGG | 0.639014 | 3.3:-31657877 | MS.gene29406:CDS |
GATAGAGGCAGGGACAACAC+CGG | 0.643119 | 3.3:+31657858 | None:intergenic |
GCTGCCCGTATTCTCGATGA+CGG | 0.643477 | 3.3:-31657928 | MS.gene29406:CDS |
AGACACCAGCATAAACATGT+TGG | 0.646971 | 3.3:+31657401 | None:intergenic |
GGAACAAATGTTAGTCATGG+GGG | 0.656011 | 3.3:-31656995 | MS.gene29406:CDS |
CCAGCATAAACATGTTGGCG+CGG | 0.656583 | 3.3:+31657406 | None:intergenic |
TCTCACGGTCGGCTAAGACA+CGG | 0.658392 | 3.3:+31658067 | None:intergenic |
GGTTCAGGTCGATAGAGGCA+GGG | 0.658904 | 3.3:+31657848 | None:intergenic |
GAACAAATGTTAGTCATGGG+GGG | 0.658931 | 3.3:-31656994 | MS.gene29406:CDS |
GTTGGCGCGGCACAACAGAA+GGG | 0.660636 | 3.3:+31657419 | None:intergenic |
GCCACTAGCCTCATTTACCT+AGG | 0.663986 | 3.3:+31656894 | None:intergenic |
CATAAGCACCATTACTGACG+CGG | 0.666254 | 3.3:+31657638 | None:intergenic |
GGTGGATGTTTCAGACTCGG+TGG | 0.677598 | 3.3:+31658113 | None:intergenic |
TGGAGATTATCGTACAGCCA+CGG | 0.684427 | 3.3:+31657904 | None:intergenic |
GCAGCATTGACAGTACCACT+AGG | 0.687827 | 3.3:+31657355 | None:intergenic |
GCATTGACAGTACCACTAGG+AGG | 0.712834 | 3.3:+31657358 | None:intergenic |
ACATCAGTGTCATCAAACAG+AGG | 0.714525 | 3.3:+31656944 | None:intergenic |
CAGGTGATCCAAGCACCAAG+GGG | 0.715495 | 3.3:+31657161 | None:intergenic |
TAAGAGATAGAGAAACAGGG+AGG | 0.733444 | 3.3:+31658211 | None:intergenic |
GTTTCCTAATACCAACTCTG+AGG | 0.734723 | 3.3:-31657131 | MS.gene29406:CDS |
GCATACGGTCCATTACGATG+TGG | 0.736469 | 3.3:+31657884 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTTTTAAATATGAGAAACT+TGG | - | chr3.3:31657615-31657634 | MS.gene29406:CDS | 20.0% |
!!! | TTTTGCTTTGACAATATTTT+GGG | + | chr3.3:31657961-31657980 | None:intergenic | 20.0% |
! | GATGAAATTGAAACAGAAAT+CGG | + | chr3.3:31657263-31657282 | None:intergenic | 25.0% |
! | GTTTCAATTTCATCACAAAA+TGG | - | chr3.3:31657269-31657288 | MS.gene29406:CDS | 25.0% |
!! | GTTTTGCTTTGACAATATTT+TGG | + | chr3.3:31657962-31657981 | None:intergenic | 25.0% |
ACTTTCCATTCTTTCTTCAA+AGG | + | chr3.3:31657564-31657583 | None:intergenic | 30.0% | |
ATAGGAACAAATGTTAGTCA+TGG | - | chr3.3:31658224-31658243 | MS.gene29406:CDS | 30.0% | |
TAGGAACAAATGTTAGTCAT+GGG | - | chr3.3:31658225-31658244 | MS.gene29406:CDS | 30.0% | |
TATTAGCAGCAAAACCAATA+CGG | + | chr3.3:31657761-31657780 | None:intergenic | 30.0% | |
! | GTTTTGCTGCTAATAACAAA+TGG | - | chr3.3:31657766-31657785 | MS.gene29406:CDS | 30.0% |
!!! | AACTTGGAGTTTTTTGTTTC+AGG | - | chr3.3:31657631-31657650 | MS.gene29406:CDS | 30.0% |
AAGGAGTGGTGACATTAATA+CGG | + | chr3.3:31657545-31657564 | None:intergenic | 35.0% | |
AATCAAACAGTGATCAAGGA+TGG | + | chr3.3:31657133-31657152 | None:intergenic | 35.0% | |
AGCAAGTAGATCATGTTTGA+GGG | + | chr3.3:31657937-31657956 | None:intergenic | 35.0% | |
AGGAACAAATGTTAGTCATG+GGG | - | chr3.3:31658226-31658245 | MS.gene29406:CDS | 35.0% | |
AGGTACTATGGATAGAGTTA+CGG | + | chr3.3:31657506-31657525 | None:intergenic | 35.0% | |
ATCCTTGATCACTGTTTGAT+TGG | - | chr3.3:31657132-31657151 | MS.gene29406:CDS | 35.0% | |
ATTAGCAGCAAAACCAATAC+GGG | + | chr3.3:31657760-31657779 | None:intergenic | 35.0% | |
TCAAACGCATATAGGTACTA+TGG | + | chr3.3:31657518-31657537 | None:intergenic | 35.0% | |
TCGGCTTCAAATTTGATTGT+TGG | - | chr3.3:31658035-31658054 | MS.gene29406:CDS | 35.0% | |
TTCTTCTTCTACAGGTAACT+CGG | - | chr3.3:31658016-31658035 | MS.gene29406:CDS | 35.0% | |
! | ATTTCATCTTTTGCTGCTGA+TGG | - | chr3.3:31658182-31658201 | MS.gene29406:CDS | 35.0% |
! | CTTTTACCTTCTTCTTCTAC+AGG | - | chr3.3:31658008-31658027 | MS.gene29406:CDS | 35.0% |
! | GGTGAGGGAAATTTTGTAAT+AGG | - | chr3.3:31658206-31658225 | MS.gene29406:CDS | 35.0% |
! | GTTTGATGACACTGATGTAA+TGG | - | chr3.3:31658283-31658302 | MS.gene29406:CDS | 35.0% |
! | TTTCATCTTTTGCTGCTGAT+GGG | - | chr3.3:31658183-31658202 | MS.gene29406:CDS | 35.0% |
!! | TCAGAGTTGGTATTAGGAAA+CGG | + | chr3.3:31658092-31658111 | None:intergenic | 35.0% |
AAACAGGGAGGAAGACAATA+GGG | + | chr3.3:31657002-31657021 | None:intergenic | 40.0% | |
AACAAATGTTAGTCATGGGG+GGG | - | chr3.3:31658229-31658248 | MS.gene29406:CDS | 40.0% | |
ACATCAGTGTCATCAAACAG+AGG | + | chr3.3:31658281-31658300 | None:intergenic | 40.0% | |
ACGGACTTTCAAACGCATAT+AGG | + | chr3.3:31657526-31657545 | None:intergenic | 40.0% | |
AGACACCAGCATAAACATGT+TGG | + | chr3.3:31657824-31657843 | None:intergenic | 40.0% | |
CAGACTCAGATTGTGTTTCA+CGG | + | chr3.3:31656954-31656973 | None:intergenic | 40.0% | |
CAGATTGTGTTTCACGGTTA+GGG | + | chr3.3:31656948-31656967 | None:intergenic | 40.0% | |
CAGCAAGTAGATCATGTTTG+AGG | + | chr3.3:31657938-31657957 | None:intergenic | 40.0% | |
CCATTCTTTCTTCAAAGGAG+TGG | + | chr3.3:31657559-31657578 | None:intergenic | 40.0% | |
CGATAATCTCCACATCGTAA+TGG | - | chr3.3:31657329-31657348 | MS.gene29406:CDS | 40.0% | |
CGGTAAGAGATAGAGAAACA+GGG | + | chr3.3:31657017-31657036 | None:intergenic | 40.0% | |
CTGAACTGAAGAAGAGAAAG+AGG | - | chr3.3:31658135-31658154 | MS.gene29406:CDS | 40.0% | |
GAACAAATGTTAGTCATGGG+GGG | - | chr3.3:31658228-31658247 | MS.gene29406:CDS | 40.0% | |
GAGTTACCTGTAGAAGAAGA+AGG | + | chr3.3:31658017-31658036 | None:intergenic | 40.0% | |
GATAGAGTTACGGACATCAT+AGG | + | chr3.3:31657496-31657515 | None:intergenic | 40.0% | |
GATTGTCAACAGCAAGCATA+CGG | + | chr3.3:31657905-31657924 | None:intergenic | 40.0% | |
GGAACAAATGTTAGTCATGG+GGG | - | chr3.3:31658227-31658246 | MS.gene29406:CDS | 40.0% | |
GGAAGACAATAGGGAAAAAG+CGG | + | chr3.3:31656993-31657012 | None:intergenic | 40.0% | |
GTTTCCTAATACCAACTCTG+AGG | - | chr3.3:31658091-31658110 | MS.gene29406:CDS | 40.0% | |
TAAGAGATAGAGAAACAGGG+AGG | + | chr3.3:31657014-31657033 | None:intergenic | 40.0% | |
TCAGATTGTGTTTCACGGTT+AGG | + | chr3.3:31656949-31656968 | None:intergenic | 40.0% | |
TCGGTAAGAGATAGAGAAAC+AGG | + | chr3.3:31657018-31657037 | None:intergenic | 40.0% | |
TTTGGTTGAATGCAGCCAAA+AGG | + | chr3.3:31657432-31657451 | None:intergenic | 40.0% | |
! | CCACTCCTTTGAAGAAAGAA+TGG | - | chr3.3:31657556-31657575 | MS.gene29406:CDS | 40.0% |
! | TTCATCTTTTGCTGCTGATG+GGG | - | chr3.3:31658184-31658203 | MS.gene29406:CDS | 40.0% |
!! | ATGATGATGGTGTTCGCAAT+TGG | - | chr3.3:31657709-31657728 | MS.gene29406:CDS | 40.0% |
!! | TCTATCTCTTACCGATTCCA+TGG | - | chr3.3:31657023-31657042 | MS.gene29406:CDS | 40.0% |
!! | TGATGATGGTGTTCGCAATT+GGG | - | chr3.3:31657710-31657729 | MS.gene29406:CDS | 40.0% |
!! | TTCGAGTTGGAGTATGATGA+TGG | - | chr3.3:31657696-31657715 | MS.gene29406:CDS | 40.0% |
!!! | GGAGTTTTTTGTTTCAGGTG+CGG | - | chr3.3:31657636-31657655 | MS.gene29406:CDS | 40.0% |
AAACCAATACGGGCAGCATT+AGG | + | chr3.3:31657750-31657769 | None:intergenic | 45.0% | |
AATAGGCAGCCTGAATCTCA+CGG | + | chr3.3:31657173-31657192 | None:intergenic | 45.0% | |
ACCTGAACCATTTGGACATC+TGG | - | chr3.3:31657388-31657407 | MS.gene29406:CDS | 45.0% | |
ATCTTGAGACTCCTCAGAGT+TGG | + | chr3.3:31658105-31658124 | None:intergenic | 45.0% | |
ATTGAGGTGAGAAGGATCCA+TGG | + | chr3.3:31657043-31657062 | None:intergenic | 45.0% | |
CAAACAGTGATCAAGGATGG+TGG | + | chr3.3:31657130-31657149 | None:intergenic | 45.0% | |
CAAATGGTTCAGGTCGATAG+AGG | + | chr3.3:31657382-31657401 | None:intergenic | 45.0% | |
CACGACATAGGTAGCTTTCT+AGG | - | chr3.3:31657459-31657478 | MS.gene29406:CDS | 45.0% | |
CATAAGCACCATTACTGACG+CGG | + | chr3.3:31657587-31657606 | None:intergenic | 45.0% | |
CCAAATGTTGGTCACGACAT+AGG | - | chr3.3:31657447-31657466 | MS.gene29406:CDS | 45.0% | |
CCAGCAATATTGAGGTGAGA+AGG | + | chr3.3:31657051-31657070 | None:intergenic | 45.0% | |
CCTATGTCGTGACCAACATT+TGG | + | chr3.3:31657450-31657469 | None:intergenic | 45.0% | |
CCTGAACCATTTGGACATCT+GGG | - | chr3.3:31657389-31657408 | MS.gene29406:CDS | 45.0% | |
CCTTCTCACCTCAATATTGC+TGG | - | chr3.3:31657048-31657067 | MS.gene29406:CDS | 45.0% | |
CTCTATCGACCTGAACCATT+TGG | - | chr3.3:31657380-31657399 | MS.gene29406:CDS | 45.0% | |
GAAACAGGGAGGAAGACAAT+AGG | + | chr3.3:31657003-31657022 | None:intergenic | 45.0% | |
GAAGAAGAGAAAGAGGATGC+TGG | - | chr3.3:31658142-31658161 | MS.gene29406:CDS | 45.0% | |
GATGACACTGATGTAATGGC+AGG | - | chr3.3:31658287-31658306 | MS.gene29406:CDS | 45.0% | |
GGCCAATCAAACAGTGATCA+AGG | + | chr3.3:31657137-31657156 | None:intergenic | 45.0% | |
GGCTGCATTCAACCAAATGT+TGG | - | chr3.3:31657435-31657454 | MS.gene29406:CDS | 45.0% | |
GGTTAAACCCTCTTCAGCAA+GGG | + | chr3.3:31657079-31657098 | None:intergenic | 45.0% | |
GTCAAAGCAAAACGTGACTC+AGG | - | chr3.3:31657969-31657988 | MS.gene29406:CDS | 45.0% | |
GTGAGAAGGATCCATGGAAT+CGG | + | chr3.3:31657037-31657056 | None:intergenic | 45.0% | |
TACCACTAGGAGGAGAGTTT+CGG | + | chr3.3:31657857-31657876 | None:intergenic | 45.0% | |
TACTCCAACTCGAACAACTC+CGG | + | chr3.3:31657690-31657709 | None:intergenic | 45.0% | |
TGGAGATTATCGTACAGCCA+CGG | + | chr3.3:31657321-31657340 | None:intergenic | 45.0% | |
TTTGCTTGGACACACTGACA+AGG | - | chr3.3:31657659-31657678 | MS.gene29406:CDS | 45.0% | |
! | GATGATGGTGTTCGCAATTG+GGG | - | chr3.3:31657711-31657730 | MS.gene29406:CDS | 45.0% |
! | GTTTCACGGTTAGGGTTTTC+TGG | + | chr3.3:31656940-31656959 | None:intergenic | 45.0% |
! | TCATCTTTTGCTGCTGATGG+GGG | - | chr3.3:31658185-31658204 | MS.gene29406:CDS | 45.0% |
!! | GACTCCTCAGAGTTGGTATT+AGG | + | chr3.3:31658098-31658117 | None:intergenic | 45.0% |
!! | GATGGTGGATGTTTCAGACT+CGG | + | chr3.3:31657115-31657134 | None:intergenic | 45.0% |
!!! | ACGGTTAGGGTTTTCTGGTT+TGG | + | chr3.3:31656935-31656954 | None:intergenic | 45.0% |
AAGCCTAATGCTGCCCGTAT+TGG | - | chr3.3:31657744-31657763 | MS.gene29406:CDS | 50.0% | |
ACACACTGACAAGGTTTGCC+CGG | - | chr3.3:31657668-31657687 | MS.gene29406:CDS | 50.0% | |
ACGGACCGTCATCGAGAATA+CGG | + | chr3.3:31657302-31657321 | None:intergenic | 50.0% | |
ACTCCAACTCGAACAACTCC+GGG | + | chr3.3:31657689-31657708 | None:intergenic | 50.0% | |
AGCCATACGCTCGCTGAAAT+AGG | + | chr3.3:31657190-31657209 | None:intergenic | 50.0% | |
CAAAAGGAAGACCGTGAACC+TGG | + | chr3.3:31657416-31657435 | None:intergenic | 50.0% | |
CAGCATTAGGCTTCAGGTCA+GGG | + | chr3.3:31657737-31657756 | None:intergenic | 50.0% | |
CCAGCATAAACATGTTGGCG+CGG | + | chr3.3:31657819-31657838 | None:intergenic | 50.0% | |
CCCAGATGTCCAAATGGTTC+AGG | + | chr3.3:31657392-31657411 | None:intergenic | 50.0% | |
GAGGAGTCTCAAGATGCTAC+TGG | - | chr3.3:31658110-31658129 | MS.gene29406:CDS | 50.0% | |
GCATACGGTCCATTACGATG+TGG | + | chr3.3:31657341-31657360 | None:intergenic | 50.0% | |
GGGTGAGACCAGCAATATTG+AGG | + | chr3.3:31657059-31657078 | None:intergenic | 50.0% | |
GGGTTAAACCCTCTTCAGCA+AGG | + | chr3.3:31657080-31657099 | None:intergenic | 50.0% | |
GTATTAGGAAACGGTCCAGC+AGG | + | chr3.3:31658083-31658102 | None:intergenic | 50.0% | |
TATGCTGGTGTCTCTTCTGC+TGG | - | chr3.3:31657831-31657850 | MS.gene29406:CDS | 50.0% | |
TGCCTATTTCAGCGAGCGTA+TGG | - | chr3.3:31657185-31657204 | MS.gene29406:CDS | 50.0% | |
TGGAAAGTCCGCGTCAGTAA+TGG | - | chr3.3:31657576-31657595 | MS.gene29406:CDS | 50.0% | |
! | AATGGCAGGCCTTGATGATC+AGG | - | chr3.3:31658301-31658320 | MS.gene29406:CDS | 50.0% |
! | CAGGTTCACGGTCTTCCTTT+TGG | - | chr3.3:31657414-31657433 | MS.gene29406:CDS | 50.0% |
! | GCATTGACAGTACCACTAGG+AGG | + | chr3.3:31657867-31657886 | None:intergenic | 50.0% |
! | TGTTTCAGGTGCGGTTTGCT+TGG | - | chr3.3:31657645-31657664 | MS.gene29406:CDS | 50.0% |
!! | AGGATGCTGGCTCTTCAGAA+TGG | - | chr3.3:31658155-31658174 | MS.gene29406:CDS | 50.0% |
!! | ATGTTTCAGACTCGGTGGCT+AGG | + | chr3.3:31657107-31657126 | None:intergenic | 50.0% |
!! | GCAGCATTGACAGTACCACT+AGG | + | chr3.3:31657870-31657889 | None:intergenic | 50.0% |
!! | GTAATGGACCGTATGCAACC+CGG | - | chr3.3:31657345-31657364 | MS.gene29406:CDS | 50.0% |
ACGATCGAAACACGCTTGCC+TGG | + | chr3.3:31657225-31657244 | None:intergenic | 55.0% | |
AGCAGGTGATCCAAGCACCA+AGG | + | chr3.3:31658066-31658085 | None:intergenic | 55.0% | |
ATAGAGGCAGGGACAACACC+GGG | + | chr3.3:31657366-31657385 | None:intergenic | 55.0% | |
CAGGTGATCCAAGCACCAAG+GGG | + | chr3.3:31658064-31658083 | None:intergenic | 55.0% | |
CCATTTGGACATCTGGGTCC+AGG | - | chr3.3:31657395-31657414 | MS.gene29406:CDS | 55.0% | |
CCGCGCCAACATGTTTATGC+TGG | - | chr3.3:31657816-31657835 | MS.gene29406:CDS | 55.0% | |
CCTGGACCCAGATGTCCAAA+TGG | + | chr3.3:31657398-31657417 | None:intergenic | 55.0% | |
CGGACCGTCATCGAGAATAC+GGG | + | chr3.3:31657301-31657320 | None:intergenic | 55.0% | |
CTAGGCAGGCCTGATCATCA+AGG | + | chr3.3:31658313-31658332 | None:intergenic | 55.0% | |
CTTAGCCGACCGTGAGATTC+AGG | - | chr3.3:31657161-31657180 | MS.gene29406:CDS | 55.0% | |
GACATCTGGGTCCAGGTTCA+CGG | - | chr3.3:31657402-31657421 | MS.gene29406:CDS | 55.0% | |
GATAGAGGCAGGGACAACAC+CGG | + | chr3.3:31657367-31657386 | None:intergenic | 55.0% | |
GCAGCATTAGGCTTCAGGTC+AGG | + | chr3.3:31657738-31657757 | None:intergenic | 55.0% | |
GCAGGTGATCCAAGCACCAA+GGG | + | chr3.3:31658065-31658084 | None:intergenic | 55.0% | |
GCGGCACAACAGAAGGGATT+GGG | + | chr3.3:31657800-31657819 | None:intergenic | 55.0% | |
GCTGCCCGTATTCTCGATGA+CGG | - | chr3.3:31657294-31657313 | MS.gene29406:CDS | 55.0% | |
GGACAACACCGGGTTGCATA+CGG | + | chr3.3:31657356-31657375 | None:intergenic | 55.0% | |
GGTCTCACCCTTGCTGAAGA+GGG | - | chr3.3:31657069-31657088 | MS.gene29406:CDS | 55.0% | |
GGTGGATGTTTCAGACTCGG+TGG | + | chr3.3:31657112-31657131 | None:intergenic | 55.0% | |
GGTTCAGGTCGATAGAGGCA+GGG | + | chr3.3:31657377-31657396 | None:intergenic | 55.0% | |
TACGGGCAGCATTAGGCTTC+AGG | + | chr3.3:31657743-31657762 | None:intergenic | 55.0% | |
TCTCACGGTCGGCTAAGACA+CGG | + | chr3.3:31657158-31657177 | None:intergenic | 55.0% | |
TGGTCTCACCCTTGCTGAAG+AGG | - | chr3.3:31657068-31657087 | MS.gene29406:CDS | 55.0% | |
TGGTTCAGGTCGATAGAGGC+AGG | + | chr3.3:31657378-31657397 | None:intergenic | 55.0% | |
TTGCCCGGAGTTGTTCGAGT+TGG | - | chr3.3:31657683-31657702 | MS.gene29406:CDS | 55.0% | |
TTTGATTGTTGGCCGCCCCT+TGG | - | chr3.3:31658046-31658065 | MS.gene29406:CDS | 55.0% | |
TTTGCTGCTGATGGGGGTGA+GGG | - | chr3.3:31658191-31658210 | MS.gene29406:CDS | 55.0% | |
! | CTTGATGATCAGGCCTGCCT+AGG | - | chr3.3:31658311-31658330 | MS.gene29406:CDS | 55.0% |
! | GTATTCTCGATGACGGTCCG+TGG | - | chr3.3:31657301-31657320 | MS.gene29406:CDS | 55.0% |
! | TTGGTGCTTGGATCACCTGC+TGG | - | chr3.3:31658065-31658084 | MS.gene29406:CDS | 55.0% |
! | TTTTGCTGCTGATGGGGGTG+AGG | - | chr3.3:31658190-31658209 | MS.gene29406:CDS | 55.0% |
!! | AGACTCGGTGGCTAGGTTCA+GGG | + | chr3.3:31657100-31657119 | None:intergenic | 55.0% |
ATGGCTCGTGCTTGGAAGCC+AGG | - | chr3.3:31657204-31657223 | MS.gene29406:CDS | 60.0% | |
CGCGGCACAACAGAAGGGAT+TGG | + | chr3.3:31657801-31657820 | None:intergenic | 60.0% | |
GGCAGCCTGAATCTCACGGT+CGG | + | chr3.3:31657169-31657188 | None:intergenic | 60.0% | |
GGCCGAAACTCTCCTCCTAG+TGG | - | chr3.3:31657852-31657871 | MS.gene29406:CDS | 60.0% | |
GTGATCCAAGCACCAAGGGG+CGG | + | chr3.3:31658061-31658080 | None:intergenic | 60.0% | |
GTTGGCGCGGCACAACAGAA+GGG | + | chr3.3:31657806-31657825 | None:intergenic | 60.0% | |
TGTTGGCGCGGCACAACAGA+AGG | + | chr3.3:31657807-31657826 | None:intergenic | 60.0% | |
!! | CAGACTCGGTGGCTAGGTTC+AGG | + | chr3.3:31657101-31657120 | None:intergenic | 60.0% |
GCGAGCGTATGGCTCGTGCT+TGG | - | chr3.3:31657196-31657215 | MS.gene29406:CDS | 65.0% | |
!! | GTTGGCCGCCCCTTGGTGCT+TGG | - | chr3.3:31658053-31658072 | MS.gene29406:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 31656904 | 31658340 | 31656904 | ID=MS.gene29406 |
chr3.3 | mRNA | 31656904 | 31658340 | 31656904 | ID=MS.gene29406.t1;Parent=MS.gene29406 |
chr3.3 | exon | 31656904 | 31658340 | 31656904 | ID=MS.gene29406.t1.exon1;Parent=MS.gene29406.t1 |
chr3.3 | CDS | 31656904 | 31658340 | 31656904 | ID=cds.MS.gene29406.t1;Parent=MS.gene29406.t1 |
Gene Sequence |
Protein sequence |