AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29406


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29406.t1 MTR_3g053920 52.601 346 95 4 47 389 1 280 2.16e-111 330
MS.gene29406.t1 MTR_2g061500 75.194 129 32 0 47 175 1 129 3.16e-68 214
MS.gene29406.t1 MTR_7g011710 81.818 88 16 0 101 188 1 88 1.50e-46 159
MS.gene29406.t1 MTR_4g103530 66.337 101 33 1 101 201 1 100 3.90e-42 148
MS.gene29406.t1 MTR_4g103530 46.875 64 34 0 297 360 119 182 7.82e-11 61.6
MS.gene29406.t1 MTR_8g463110 70.339 118 32 1 335 449 1 118 1.27e-35 140
MS.gene29406.t1 MTR_6g033215 35.260 173 110 1 75 245 122 294 2.58e-34 130
MS.gene29406.t1 MTR_0010s0370 36.207 174 101 6 57 223 7 177 5.21e-28 110
MS.gene29406.t1 MTR_0010s0350 36.207 174 101 6 57 223 7 177 5.21e-28 110
MS.gene29406.t1 MTR_7g106180 26.000 150 103 3 78 221 19 166 2.59e-14 72.8
MS.gene29406.t1 MTR_1g036720 30.769 104 70 1 57 158 7 110 1.77e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29406.t1 AT2G17920 27.907 215 145 5 54 262 9 219 1.61e-18 86.7
MS.gene29406.t1 AT2G41590 27.439 164 115 2 101 262 58 219 1.29e-16 81.6
MS.gene29406.t1 AT5G18636 27.442 215 146 4 54 262 9 219 3.37e-16 80.5
MS.gene29406.t1 AT5G25200 27.442 215 146 4 54 262 9 219 3.40e-16 80.5
MS.gene29406.t1 AT3G57587 28.378 148 102 2 117 262 74 219 3.47e-16 80.5
MS.gene29406.t1 AT2G02103 27.907 215 145 4 54 262 9 219 5.71e-16 80.1
MS.gene29406.t1 AT5G36228 27.083 192 136 2 82 271 39 228 5.93e-16 79.7
MS.gene29406.t1 AT3G31430 26.374 182 128 3 82 261 134 311 2.86e-14 74.3
MS.gene29406.t1 AT2G13450 25.543 184 129 4 82 261 39 218 7.43e-14 73.6
MS.gene29406.t1 AT3G47920 25.000 148 107 2 117 262 3 148 1.01e-12 69.3

Find 144 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCAATTTCATCACAAAA+TGG 0.275930 3.3:-31657953 MS.gene29406:CDS
CAGACTCGGTGGCTAGGTTC+AGG 0.306454 3.3:+31658124 None:intergenic
TCGGTAAGAGATAGAGAAAC+AGG 0.309778 3.3:+31658207 None:intergenic
ACCTGAACCATTTGGACATC+TGG 0.323453 3.3:-31657834 MS.gene29406:CDS
CAGGTTCACGGTCTTCCTTT+TGG 0.325576 3.3:-31657808 MS.gene29406:CDS
CTTAGCCGACCGTGAGATTC+AGG 0.334402 3.3:-31658061 MS.gene29406:CDS
GACTCCTCAGAGTTGGTATT+AGG 0.336786 3.3:+31657127 None:intergenic
TACGGGCAGCATTAGGCTTC+AGG 0.352023 3.3:+31657482 None:intergenic
TCAGATTGTGTTTCACGGTT+AGG 0.362563 3.3:+31658276 None:intergenic
GCAGCATTAGGCTTCAGGTC+AGG 0.367623 3.3:+31657487 None:intergenic
ATCCTTGATCACTGTTTGAT+TGG 0.375534 3.3:-31658090 MS.gene29406:CDS
TTGGTGCTTGGATCACCTGC+TGG 0.383837 3.3:-31657157 MS.gene29406:CDS
ACGATCGAAACACGCTTGCC+TGG 0.389839 3.3:+31658000 None:intergenic
CAGATTGTGTTTCACGGTTA+GGG 0.390851 3.3:+31658277 None:intergenic
AGCCATACGCTCGCTGAAAT+AGG 0.391985 3.3:+31658035 None:intergenic
CCCAGATGTCCAAATGGTTC+AGG 0.397477 3.3:+31657833 None:intergenic
CCTTCTCACCTCAATATTGC+TGG 0.397709 3.3:-31658174 MS.gene29406:CDS
CACGACATAGGTAGCTTTCT+AGG 0.402316 3.3:-31657763 MS.gene29406:CDS
GAAACAGGGAGGAAGACAAT+AGG 0.405034 3.3:+31658222 None:intergenic
GTTGGCCGCCCCTTGGTGCT+TGG 0.411391 3.3:-31657169 MS.gene29406:CDS
AATGGCAGGCCTTGATGATC+AGG 0.412415 3.3:-31656921 MS.gene29406:CDS
GACATCTGGGTCCAGGTTCA+CGG 0.413519 3.3:-31657820 MS.gene29406:CDS
CTCTATCGACCTGAACCATT+TGG 0.415630 3.3:-31657842 MS.gene29406:CDS
AAACCAATACGGGCAGCATT+AGG 0.417335 3.3:+31657475 None:intergenic
TCGGCTTCAAATTTGATTGT+TGG 0.420945 3.3:-31657187 MS.gene29406:CDS
AAGCCTAATGCTGCCCGTAT+TGG 0.422074 3.3:-31657478 MS.gene29406:CDS
CCTATGTCGTGACCAACATT+TGG 0.425346 3.3:+31657775 None:intergenic
TCAAACGCATATAGGTACTA+TGG 0.426389 3.3:+31657707 None:intergenic
ATGGCTCGTGCTTGGAAGCC+AGG 0.426942 3.3:-31658018 MS.gene29406:CDS
ATGATGATGGTGTTCGCAAT+TGG 0.426984 3.3:-31657513 MS.gene29406:CDS
TGTTTCAGGTGCGGTTTGCT+TGG 0.429250 3.3:-31657577 MS.gene29406:CDS
AAACAGGGAGGAAGACAATA+GGG 0.434502 3.3:+31658223 None:intergenic
ACGGACTTTCAAACGCATAT+AGG 0.445879 3.3:+31657699 None:intergenic
TACCACTAGGAGGAGAGTTT+CGG 0.448317 3.3:+31657368 None:intergenic
ACGGACCGTCATCGAGAATA+CGG 0.448638 3.3:+31657923 None:intergenic
TATGCTGGTGTCTCTTCTGC+TGG 0.452739 3.3:-31657391 MS.gene29406:CDS
CCACTCCTTTGAAGAAAGAA+TGG 0.453354 3.3:-31657666 MS.gene29406:CDS
TGATGATGGTGTTCGCAATT+GGG 0.461183 3.3:-31657512 MS.gene29406:CDS
CAAAAGGAAGACCGTGAACC+TGG 0.461333 3.3:+31657809 None:intergenic
CGCGGCACAACAGAAGGGAT+TGG 0.461403 3.3:+31657424 None:intergenic
GATGAAATTGAAACAGAAAT+CGG 0.463191 3.3:+31657962 None:intergenic
GATAGAGTTACGGACATCAT+AGG 0.469134 3.3:+31657729 None:intergenic
AGACTCGGTGGCTAGGTTCA+GGG 0.469866 3.3:+31658125 None:intergenic
TCTATCTCTTACCGATTCCA+TGG 0.471695 3.3:-31658199 MS.gene29406:CDS
GCGGCACAACAGAAGGGATT+GGG 0.475065 3.3:+31657425 None:intergenic
TATTAGCAGCAAAACCAATA+CGG 0.478257 3.3:+31657464 None:intergenic
CAGACTCAGATTGTGTTTCA+CGG 0.481156 3.3:+31658271 None:intergenic
CAGCATTAGGCTTCAGGTCA+GGG 0.485216 3.3:+31657488 None:intergenic
TGGTCTCACCCTTGCTGAAG+AGG 0.487281 3.3:-31658154 MS.gene29406:CDS
GGTCTCACCCTTGCTGAAGA+GGG 0.487511 3.3:-31658153 MS.gene29406:CDS
GAGGAGTCTCAAGATGCTAC+TGG 0.487924 3.3:-31657112 MS.gene29406:CDS
TGCCTATTTCAGCGAGCGTA+TGG 0.489265 3.3:-31658037 MS.gene29406:CDS
TTTGATTGTTGGCCGCCCCT+TGG 0.490362 3.3:-31657176 MS.gene29406:CDS
TACTCCAACTCGAACAACTC+CGG 0.491131 3.3:+31657535 None:intergenic
ACTTTCCATTCTTTCTTCAA+AGG 0.491536 3.3:+31657661 None:intergenic
CCATTTGGACATCTGGGTCC+AGG 0.493863 3.3:-31657827 MS.gene29406:CDS
TTGCCCGGAGTTGTTCGAGT+TGG 0.498205 3.3:-31657539 MS.gene29406:CDS
TGGTTCAGGTCGATAGAGGC+AGG 0.498541 3.3:+31657847 None:intergenic
CCATTCTTTCTTCAAAGGAG+TGG 0.499164 3.3:+31657666 None:intergenic
TGTTGGCGCGGCACAACAGA+AGG 0.501754 3.3:+31657418 None:intergenic
GCGAGCGTATGGCTCGTGCT+TGG 0.503834 3.3:-31658026 MS.gene29406:CDS
CAAATGGTTCAGGTCGATAG+AGG 0.510517 3.3:+31657843 None:intergenic
TTTGGTTGAATGCAGCCAAA+AGG 0.511595 3.3:+31657793 None:intergenic
CAGCAAGTAGATCATGTTTG+AGG 0.515254 3.3:+31657287 None:intergenic
TAGGAACAAATGTTAGTCAT+GGG 0.515296 3.3:-31656997 MS.gene29406:CDS
CGATAATCTCCACATCGTAA+TGG 0.517010 3.3:-31657893 MS.gene29406:CDS
AGGTACTATGGATAGAGTTA+CGG 0.517799 3.3:+31657719 None:intergenic
CCTGGACCCAGATGTCCAAA+TGG 0.518153 3.3:+31657827 None:intergenic
GGCTGCATTCAACCAAATGT+TGG 0.520543 3.3:-31657787 MS.gene29406:CDS
TTCTTCTTCTACAGGTAACT+CGG 0.521316 3.3:-31657206 MS.gene29406:CDS
ACACACTGACAAGGTTTGCC+CGG 0.528306 3.3:-31657554 MS.gene29406:CDS
CCAAATGTTGGTCACGACAT+AGG 0.530107 3.3:-31657775 MS.gene29406:CDS
GTTTGATGACACTGATGTAA+TGG 0.531460 3.3:-31656939 MS.gene29406:CDS
CTGAACTGAAGAAGAGAAAG+AGG 0.535515 3.3:-31657087 MS.gene29406:CDS
GGCCAATCAAACAGTGATCA+AGG 0.536687 3.3:+31658088 None:intergenic
GTATTAGGAAACGGTCCAGC+AGG 0.537381 3.3:+31657142 None:intergenic
GGACAACACCGGGTTGCATA+CGG 0.540333 3.3:+31657869 None:intergenic
ATAGGAACAAATGTTAGTCA+TGG 0.541273 3.3:-31656998 MS.gene29406:CDS
GAAGAAGAGAAAGAGGATGC+TGG 0.542242 3.3:-31657080 MS.gene29406:CDS
CTAGCCTCATTTACCTAGGC+AGG 0.542385 3.3:+31656898 None:intergenic
ATGTTTCAGACTCGGTGGCT+AGG 0.544692 3.3:+31658118 None:intergenic
CTTGATGATCAGGCCTGCCT+AGG 0.545915 3.3:-31656911 MS.gene29406:CDS
GCAGGTGATCCAAGCACCAA+GGG 0.551957 3.3:+31657160 None:intergenic
AGCAAGTAGATCATGTTTGA+GGG 0.552412 3.3:+31657288 None:intergenic
TCAGAGTTGGTATTAGGAAA+CGG 0.553022 3.3:+31657133 None:intergenic
GTGAGAAGGATCCATGGAAT+CGG 0.553139 3.3:+31658188 None:intergenic
TTCGAGTTGGAGTATGATGA+TGG 0.553333 3.3:-31657526 MS.gene29406:CDS
ATTAGCAGCAAAACCAATAC+GGG 0.555064 3.3:+31657465 None:intergenic
CAGGCCTGCCTAGGTAAATG+AGG 0.555791 3.3:-31656902 None:intergenic
GTCAAAGCAAAACGTGACTC+AGG 0.555861 3.3:-31657253 MS.gene29406:CDS
AAGGAGTGGTGACATTAATA+CGG 0.558516 3.3:+31657680 None:intergenic
TGGAAAGTCCGCGTCAGTAA+TGG 0.560762 3.3:-31657646 MS.gene29406:CDS
CCGCGCCAACATGTTTATGC+TGG 0.561526 3.3:-31657406 MS.gene29406:CDS
GGGTTAAACCCTCTTCAGCA+AGG 0.563127 3.3:+31658145 None:intergenic
ATCTTGAGACTCCTCAGAGT+TGG 0.563156 3.3:+31657120 None:intergenic
ACTCCAACTCGAACAACTCC+GGG 0.565052 3.3:+31657536 None:intergenic
CCAGCAATATTGAGGTGAGA+AGG 0.566066 3.3:+31658174 None:intergenic
CCTGAACCATTTGGACATCT+GGG 0.566438 3.3:-31657833 MS.gene29406:CDS
GAGTTACCTGTAGAAGAAGA+AGG 0.567956 3.3:+31657208 None:intergenic
GGGTGAGACCAGCAATATTG+AGG 0.568160 3.3:+31658166 None:intergenic
AGGATGCTGGCTCTTCAGAA+TGG 0.570182 3.3:-31657067 MS.gene29406:CDS
CTAGGCAGGCCTGATCATCA+AGG 0.575743 3.3:+31656912 None:intergenic
GATTGTCAACAGCAAGCATA+CGG 0.578956 3.3:+31657320 None:intergenic
CGGACCGTCATCGAGAATAC+GGG 0.590350 3.3:+31657924 None:intergenic
ATTGAGGTGAGAAGGATCCA+TGG 0.594735 3.3:+31658182 None:intergenic
GATGATGGTGTTCGCAATTG+GGG 0.596979 3.3:-31657511 MS.gene29406:CDS
AGCAGGTGATCCAAGCACCA+AGG 0.598268 3.3:+31657159 None:intergenic
CAAACAGTGATCAAGGATGG+TGG 0.603272 3.3:+31658095 None:intergenic
ATAGAGGCAGGGACAACACC+GGG 0.603779 3.3:+31657859 None:intergenic
GATGGTGGATGTTTCAGACT+CGG 0.616645 3.3:+31658110 None:intergenic
AACAAATGTTAGTCATGGGG+GGG 0.619233 3.3:-31656993 MS.gene29406:CDS
CGGTAAGAGATAGAGAAACA+GGG 0.623032 3.3:+31658208 None:intergenic
AATCAAACAGTGATCAAGGA+TGG 0.623412 3.3:+31658092 None:intergenic
GGCAGCCTGAATCTCACGGT+CGG 0.624448 3.3:+31658056 None:intergenic
AATAGGCAGCCTGAATCTCA+CGG 0.627231 3.3:+31658052 None:intergenic
AAGCAGACAATAGTTGACAT+TGG 0.628524 3.3:+31658321 None:intergenic
TTTGCTTGGACACACTGACA+AGG 0.630531 3.3:-31657563 MS.gene29406:CDS
GTGATCCAAGCACCAAGGGG+CGG 0.631081 3.3:+31657164 None:intergenic
GATGACACTGATGTAATGGC+AGG 0.632333 3.3:-31656935 MS.gene29406:CDS
GGTTAAACCCTCTTCAGCAA+GGG 0.635778 3.3:+31658146 None:intergenic
AGGAACAAATGTTAGTCATG+GGG 0.636254 3.3:-31656996 MS.gene29406:CDS
GTATTCTCGATGACGGTCCG+TGG 0.636653 3.3:-31657921 MS.gene29406:CDS
GGCCGAAACTCTCCTCCTAG+TGG 0.636967 3.3:-31657370 MS.gene29406:CDS
GTAATGGACCGTATGCAACC+CGG 0.639014 3.3:-31657877 MS.gene29406:CDS
GATAGAGGCAGGGACAACAC+CGG 0.643119 3.3:+31657858 None:intergenic
GCTGCCCGTATTCTCGATGA+CGG 0.643477 3.3:-31657928 MS.gene29406:CDS
AGACACCAGCATAAACATGT+TGG 0.646971 3.3:+31657401 None:intergenic
GGAACAAATGTTAGTCATGG+GGG 0.656011 3.3:-31656995 MS.gene29406:CDS
CCAGCATAAACATGTTGGCG+CGG 0.656583 3.3:+31657406 None:intergenic
TCTCACGGTCGGCTAAGACA+CGG 0.658392 3.3:+31658067 None:intergenic
GGTTCAGGTCGATAGAGGCA+GGG 0.658904 3.3:+31657848 None:intergenic
GAACAAATGTTAGTCATGGG+GGG 0.658931 3.3:-31656994 MS.gene29406:CDS
GTTGGCGCGGCACAACAGAA+GGG 0.660636 3.3:+31657419 None:intergenic
GCCACTAGCCTCATTTACCT+AGG 0.663986 3.3:+31656894 None:intergenic
CATAAGCACCATTACTGACG+CGG 0.666254 3.3:+31657638 None:intergenic
GGTGGATGTTTCAGACTCGG+TGG 0.677598 3.3:+31658113 None:intergenic
TGGAGATTATCGTACAGCCA+CGG 0.684427 3.3:+31657904 None:intergenic
GCAGCATTGACAGTACCACT+AGG 0.687827 3.3:+31657355 None:intergenic
GCATTGACAGTACCACTAGG+AGG 0.712834 3.3:+31657358 None:intergenic
ACATCAGTGTCATCAAACAG+AGG 0.714525 3.3:+31656944 None:intergenic
CAGGTGATCCAAGCACCAAG+GGG 0.715495 3.3:+31657161 None:intergenic
TAAGAGATAGAGAAACAGGG+AGG 0.733444 3.3:+31658211 None:intergenic
GTTTCCTAATACCAACTCTG+AGG 0.734723 3.3:-31657131 MS.gene29406:CDS
GCATACGGTCCATTACGATG+TGG 0.736469 3.3:+31657884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTAAATATGAGAAACT+TGG - chr3.3:31657615-31657634 MS.gene29406:CDS 20.0%
!!! TTTTGCTTTGACAATATTTT+GGG + chr3.3:31657961-31657980 None:intergenic 20.0%
! GATGAAATTGAAACAGAAAT+CGG + chr3.3:31657263-31657282 None:intergenic 25.0%
! GTTTCAATTTCATCACAAAA+TGG - chr3.3:31657269-31657288 MS.gene29406:CDS 25.0%
!! GTTTTGCTTTGACAATATTT+TGG + chr3.3:31657962-31657981 None:intergenic 25.0%
ACTTTCCATTCTTTCTTCAA+AGG + chr3.3:31657564-31657583 None:intergenic 30.0%
ATAGGAACAAATGTTAGTCA+TGG - chr3.3:31658224-31658243 MS.gene29406:CDS 30.0%
TAGGAACAAATGTTAGTCAT+GGG - chr3.3:31658225-31658244 MS.gene29406:CDS 30.0%
TATTAGCAGCAAAACCAATA+CGG + chr3.3:31657761-31657780 None:intergenic 30.0%
! GTTTTGCTGCTAATAACAAA+TGG - chr3.3:31657766-31657785 MS.gene29406:CDS 30.0%
!!! AACTTGGAGTTTTTTGTTTC+AGG - chr3.3:31657631-31657650 MS.gene29406:CDS 30.0%
AAGGAGTGGTGACATTAATA+CGG + chr3.3:31657545-31657564 None:intergenic 35.0%
AATCAAACAGTGATCAAGGA+TGG + chr3.3:31657133-31657152 None:intergenic 35.0%
AGCAAGTAGATCATGTTTGA+GGG + chr3.3:31657937-31657956 None:intergenic 35.0%
AGGAACAAATGTTAGTCATG+GGG - chr3.3:31658226-31658245 MS.gene29406:CDS 35.0%
AGGTACTATGGATAGAGTTA+CGG + chr3.3:31657506-31657525 None:intergenic 35.0%
ATCCTTGATCACTGTTTGAT+TGG - chr3.3:31657132-31657151 MS.gene29406:CDS 35.0%
ATTAGCAGCAAAACCAATAC+GGG + chr3.3:31657760-31657779 None:intergenic 35.0%
TCAAACGCATATAGGTACTA+TGG + chr3.3:31657518-31657537 None:intergenic 35.0%
TCGGCTTCAAATTTGATTGT+TGG - chr3.3:31658035-31658054 MS.gene29406:CDS 35.0%
TTCTTCTTCTACAGGTAACT+CGG - chr3.3:31658016-31658035 MS.gene29406:CDS 35.0%
! ATTTCATCTTTTGCTGCTGA+TGG - chr3.3:31658182-31658201 MS.gene29406:CDS 35.0%
! CTTTTACCTTCTTCTTCTAC+AGG - chr3.3:31658008-31658027 MS.gene29406:CDS 35.0%
! GGTGAGGGAAATTTTGTAAT+AGG - chr3.3:31658206-31658225 MS.gene29406:CDS 35.0%
! GTTTGATGACACTGATGTAA+TGG - chr3.3:31658283-31658302 MS.gene29406:CDS 35.0%
! TTTCATCTTTTGCTGCTGAT+GGG - chr3.3:31658183-31658202 MS.gene29406:CDS 35.0%
!! TCAGAGTTGGTATTAGGAAA+CGG + chr3.3:31658092-31658111 None:intergenic 35.0%
AAACAGGGAGGAAGACAATA+GGG + chr3.3:31657002-31657021 None:intergenic 40.0%
AACAAATGTTAGTCATGGGG+GGG - chr3.3:31658229-31658248 MS.gene29406:CDS 40.0%
ACATCAGTGTCATCAAACAG+AGG + chr3.3:31658281-31658300 None:intergenic 40.0%
ACGGACTTTCAAACGCATAT+AGG + chr3.3:31657526-31657545 None:intergenic 40.0%
AGACACCAGCATAAACATGT+TGG + chr3.3:31657824-31657843 None:intergenic 40.0%
CAGACTCAGATTGTGTTTCA+CGG + chr3.3:31656954-31656973 None:intergenic 40.0%
CAGATTGTGTTTCACGGTTA+GGG + chr3.3:31656948-31656967 None:intergenic 40.0%
CAGCAAGTAGATCATGTTTG+AGG + chr3.3:31657938-31657957 None:intergenic 40.0%
CCATTCTTTCTTCAAAGGAG+TGG + chr3.3:31657559-31657578 None:intergenic 40.0%
CGATAATCTCCACATCGTAA+TGG - chr3.3:31657329-31657348 MS.gene29406:CDS 40.0%
CGGTAAGAGATAGAGAAACA+GGG + chr3.3:31657017-31657036 None:intergenic 40.0%
CTGAACTGAAGAAGAGAAAG+AGG - chr3.3:31658135-31658154 MS.gene29406:CDS 40.0%
GAACAAATGTTAGTCATGGG+GGG - chr3.3:31658228-31658247 MS.gene29406:CDS 40.0%
GAGTTACCTGTAGAAGAAGA+AGG + chr3.3:31658017-31658036 None:intergenic 40.0%
GATAGAGTTACGGACATCAT+AGG + chr3.3:31657496-31657515 None:intergenic 40.0%
GATTGTCAACAGCAAGCATA+CGG + chr3.3:31657905-31657924 None:intergenic 40.0%
GGAACAAATGTTAGTCATGG+GGG - chr3.3:31658227-31658246 MS.gene29406:CDS 40.0%
GGAAGACAATAGGGAAAAAG+CGG + chr3.3:31656993-31657012 None:intergenic 40.0%
GTTTCCTAATACCAACTCTG+AGG - chr3.3:31658091-31658110 MS.gene29406:CDS 40.0%
TAAGAGATAGAGAAACAGGG+AGG + chr3.3:31657014-31657033 None:intergenic 40.0%
TCAGATTGTGTTTCACGGTT+AGG + chr3.3:31656949-31656968 None:intergenic 40.0%
TCGGTAAGAGATAGAGAAAC+AGG + chr3.3:31657018-31657037 None:intergenic 40.0%
TTTGGTTGAATGCAGCCAAA+AGG + chr3.3:31657432-31657451 None:intergenic 40.0%
! CCACTCCTTTGAAGAAAGAA+TGG - chr3.3:31657556-31657575 MS.gene29406:CDS 40.0%
! TTCATCTTTTGCTGCTGATG+GGG - chr3.3:31658184-31658203 MS.gene29406:CDS 40.0%
!! ATGATGATGGTGTTCGCAAT+TGG - chr3.3:31657709-31657728 MS.gene29406:CDS 40.0%
!! TCTATCTCTTACCGATTCCA+TGG - chr3.3:31657023-31657042 MS.gene29406:CDS 40.0%
!! TGATGATGGTGTTCGCAATT+GGG - chr3.3:31657710-31657729 MS.gene29406:CDS 40.0%
!! TTCGAGTTGGAGTATGATGA+TGG - chr3.3:31657696-31657715 MS.gene29406:CDS 40.0%
!!! GGAGTTTTTTGTTTCAGGTG+CGG - chr3.3:31657636-31657655 MS.gene29406:CDS 40.0%
AAACCAATACGGGCAGCATT+AGG + chr3.3:31657750-31657769 None:intergenic 45.0%
AATAGGCAGCCTGAATCTCA+CGG + chr3.3:31657173-31657192 None:intergenic 45.0%
ACCTGAACCATTTGGACATC+TGG - chr3.3:31657388-31657407 MS.gene29406:CDS 45.0%
ATCTTGAGACTCCTCAGAGT+TGG + chr3.3:31658105-31658124 None:intergenic 45.0%
ATTGAGGTGAGAAGGATCCA+TGG + chr3.3:31657043-31657062 None:intergenic 45.0%
CAAACAGTGATCAAGGATGG+TGG + chr3.3:31657130-31657149 None:intergenic 45.0%
CAAATGGTTCAGGTCGATAG+AGG + chr3.3:31657382-31657401 None:intergenic 45.0%
CACGACATAGGTAGCTTTCT+AGG - chr3.3:31657459-31657478 MS.gene29406:CDS 45.0%
CATAAGCACCATTACTGACG+CGG + chr3.3:31657587-31657606 None:intergenic 45.0%
CCAAATGTTGGTCACGACAT+AGG - chr3.3:31657447-31657466 MS.gene29406:CDS 45.0%
CCAGCAATATTGAGGTGAGA+AGG + chr3.3:31657051-31657070 None:intergenic 45.0%
CCTATGTCGTGACCAACATT+TGG + chr3.3:31657450-31657469 None:intergenic 45.0%
CCTGAACCATTTGGACATCT+GGG - chr3.3:31657389-31657408 MS.gene29406:CDS 45.0%
CCTTCTCACCTCAATATTGC+TGG - chr3.3:31657048-31657067 MS.gene29406:CDS 45.0%
CTCTATCGACCTGAACCATT+TGG - chr3.3:31657380-31657399 MS.gene29406:CDS 45.0%
GAAACAGGGAGGAAGACAAT+AGG + chr3.3:31657003-31657022 None:intergenic 45.0%
GAAGAAGAGAAAGAGGATGC+TGG - chr3.3:31658142-31658161 MS.gene29406:CDS 45.0%
GATGACACTGATGTAATGGC+AGG - chr3.3:31658287-31658306 MS.gene29406:CDS 45.0%
GGCCAATCAAACAGTGATCA+AGG + chr3.3:31657137-31657156 None:intergenic 45.0%
GGCTGCATTCAACCAAATGT+TGG - chr3.3:31657435-31657454 MS.gene29406:CDS 45.0%
GGTTAAACCCTCTTCAGCAA+GGG + chr3.3:31657079-31657098 None:intergenic 45.0%
GTCAAAGCAAAACGTGACTC+AGG - chr3.3:31657969-31657988 MS.gene29406:CDS 45.0%
GTGAGAAGGATCCATGGAAT+CGG + chr3.3:31657037-31657056 None:intergenic 45.0%
TACCACTAGGAGGAGAGTTT+CGG + chr3.3:31657857-31657876 None:intergenic 45.0%
TACTCCAACTCGAACAACTC+CGG + chr3.3:31657690-31657709 None:intergenic 45.0%
TGGAGATTATCGTACAGCCA+CGG + chr3.3:31657321-31657340 None:intergenic 45.0%
TTTGCTTGGACACACTGACA+AGG - chr3.3:31657659-31657678 MS.gene29406:CDS 45.0%
! GATGATGGTGTTCGCAATTG+GGG - chr3.3:31657711-31657730 MS.gene29406:CDS 45.0%
! GTTTCACGGTTAGGGTTTTC+TGG + chr3.3:31656940-31656959 None:intergenic 45.0%
! TCATCTTTTGCTGCTGATGG+GGG - chr3.3:31658185-31658204 MS.gene29406:CDS 45.0%
!! GACTCCTCAGAGTTGGTATT+AGG + chr3.3:31658098-31658117 None:intergenic 45.0%
!! GATGGTGGATGTTTCAGACT+CGG + chr3.3:31657115-31657134 None:intergenic 45.0%
!!! ACGGTTAGGGTTTTCTGGTT+TGG + chr3.3:31656935-31656954 None:intergenic 45.0%
AAGCCTAATGCTGCCCGTAT+TGG - chr3.3:31657744-31657763 MS.gene29406:CDS 50.0%
ACACACTGACAAGGTTTGCC+CGG - chr3.3:31657668-31657687 MS.gene29406:CDS 50.0%
ACGGACCGTCATCGAGAATA+CGG + chr3.3:31657302-31657321 None:intergenic 50.0%
ACTCCAACTCGAACAACTCC+GGG + chr3.3:31657689-31657708 None:intergenic 50.0%
AGCCATACGCTCGCTGAAAT+AGG + chr3.3:31657190-31657209 None:intergenic 50.0%
CAAAAGGAAGACCGTGAACC+TGG + chr3.3:31657416-31657435 None:intergenic 50.0%
CAGCATTAGGCTTCAGGTCA+GGG + chr3.3:31657737-31657756 None:intergenic 50.0%
CCAGCATAAACATGTTGGCG+CGG + chr3.3:31657819-31657838 None:intergenic 50.0%
CCCAGATGTCCAAATGGTTC+AGG + chr3.3:31657392-31657411 None:intergenic 50.0%
GAGGAGTCTCAAGATGCTAC+TGG - chr3.3:31658110-31658129 MS.gene29406:CDS 50.0%
GCATACGGTCCATTACGATG+TGG + chr3.3:31657341-31657360 None:intergenic 50.0%
GGGTGAGACCAGCAATATTG+AGG + chr3.3:31657059-31657078 None:intergenic 50.0%
GGGTTAAACCCTCTTCAGCA+AGG + chr3.3:31657080-31657099 None:intergenic 50.0%
GTATTAGGAAACGGTCCAGC+AGG + chr3.3:31658083-31658102 None:intergenic 50.0%
TATGCTGGTGTCTCTTCTGC+TGG - chr3.3:31657831-31657850 MS.gene29406:CDS 50.0%
TGCCTATTTCAGCGAGCGTA+TGG - chr3.3:31657185-31657204 MS.gene29406:CDS 50.0%
TGGAAAGTCCGCGTCAGTAA+TGG - chr3.3:31657576-31657595 MS.gene29406:CDS 50.0%
! AATGGCAGGCCTTGATGATC+AGG - chr3.3:31658301-31658320 MS.gene29406:CDS 50.0%
! CAGGTTCACGGTCTTCCTTT+TGG - chr3.3:31657414-31657433 MS.gene29406:CDS 50.0%
! GCATTGACAGTACCACTAGG+AGG + chr3.3:31657867-31657886 None:intergenic 50.0%
! TGTTTCAGGTGCGGTTTGCT+TGG - chr3.3:31657645-31657664 MS.gene29406:CDS 50.0%
!! AGGATGCTGGCTCTTCAGAA+TGG - chr3.3:31658155-31658174 MS.gene29406:CDS 50.0%
!! ATGTTTCAGACTCGGTGGCT+AGG + chr3.3:31657107-31657126 None:intergenic 50.0%
!! GCAGCATTGACAGTACCACT+AGG + chr3.3:31657870-31657889 None:intergenic 50.0%
!! GTAATGGACCGTATGCAACC+CGG - chr3.3:31657345-31657364 MS.gene29406:CDS 50.0%
ACGATCGAAACACGCTTGCC+TGG + chr3.3:31657225-31657244 None:intergenic 55.0%
AGCAGGTGATCCAAGCACCA+AGG + chr3.3:31658066-31658085 None:intergenic 55.0%
ATAGAGGCAGGGACAACACC+GGG + chr3.3:31657366-31657385 None:intergenic 55.0%
CAGGTGATCCAAGCACCAAG+GGG + chr3.3:31658064-31658083 None:intergenic 55.0%
CCATTTGGACATCTGGGTCC+AGG - chr3.3:31657395-31657414 MS.gene29406:CDS 55.0%
CCGCGCCAACATGTTTATGC+TGG - chr3.3:31657816-31657835 MS.gene29406:CDS 55.0%
CCTGGACCCAGATGTCCAAA+TGG + chr3.3:31657398-31657417 None:intergenic 55.0%
CGGACCGTCATCGAGAATAC+GGG + chr3.3:31657301-31657320 None:intergenic 55.0%
CTAGGCAGGCCTGATCATCA+AGG + chr3.3:31658313-31658332 None:intergenic 55.0%
CTTAGCCGACCGTGAGATTC+AGG - chr3.3:31657161-31657180 MS.gene29406:CDS 55.0%
GACATCTGGGTCCAGGTTCA+CGG - chr3.3:31657402-31657421 MS.gene29406:CDS 55.0%
GATAGAGGCAGGGACAACAC+CGG + chr3.3:31657367-31657386 None:intergenic 55.0%
GCAGCATTAGGCTTCAGGTC+AGG + chr3.3:31657738-31657757 None:intergenic 55.0%
GCAGGTGATCCAAGCACCAA+GGG + chr3.3:31658065-31658084 None:intergenic 55.0%
GCGGCACAACAGAAGGGATT+GGG + chr3.3:31657800-31657819 None:intergenic 55.0%
GCTGCCCGTATTCTCGATGA+CGG - chr3.3:31657294-31657313 MS.gene29406:CDS 55.0%
GGACAACACCGGGTTGCATA+CGG + chr3.3:31657356-31657375 None:intergenic 55.0%
GGTCTCACCCTTGCTGAAGA+GGG - chr3.3:31657069-31657088 MS.gene29406:CDS 55.0%
GGTGGATGTTTCAGACTCGG+TGG + chr3.3:31657112-31657131 None:intergenic 55.0%
GGTTCAGGTCGATAGAGGCA+GGG + chr3.3:31657377-31657396 None:intergenic 55.0%
TACGGGCAGCATTAGGCTTC+AGG + chr3.3:31657743-31657762 None:intergenic 55.0%
TCTCACGGTCGGCTAAGACA+CGG + chr3.3:31657158-31657177 None:intergenic 55.0%
TGGTCTCACCCTTGCTGAAG+AGG - chr3.3:31657068-31657087 MS.gene29406:CDS 55.0%
TGGTTCAGGTCGATAGAGGC+AGG + chr3.3:31657378-31657397 None:intergenic 55.0%
TTGCCCGGAGTTGTTCGAGT+TGG - chr3.3:31657683-31657702 MS.gene29406:CDS 55.0%
TTTGATTGTTGGCCGCCCCT+TGG - chr3.3:31658046-31658065 MS.gene29406:CDS 55.0%
TTTGCTGCTGATGGGGGTGA+GGG - chr3.3:31658191-31658210 MS.gene29406:CDS 55.0%
! CTTGATGATCAGGCCTGCCT+AGG - chr3.3:31658311-31658330 MS.gene29406:CDS 55.0%
! GTATTCTCGATGACGGTCCG+TGG - chr3.3:31657301-31657320 MS.gene29406:CDS 55.0%
! TTGGTGCTTGGATCACCTGC+TGG - chr3.3:31658065-31658084 MS.gene29406:CDS 55.0%
! TTTTGCTGCTGATGGGGGTG+AGG - chr3.3:31658190-31658209 MS.gene29406:CDS 55.0%
!! AGACTCGGTGGCTAGGTTCA+GGG + chr3.3:31657100-31657119 None:intergenic 55.0%
ATGGCTCGTGCTTGGAAGCC+AGG - chr3.3:31657204-31657223 MS.gene29406:CDS 60.0%
CGCGGCACAACAGAAGGGAT+TGG + chr3.3:31657801-31657820 None:intergenic 60.0%
GGCAGCCTGAATCTCACGGT+CGG + chr3.3:31657169-31657188 None:intergenic 60.0%
GGCCGAAACTCTCCTCCTAG+TGG - chr3.3:31657852-31657871 MS.gene29406:CDS 60.0%
GTGATCCAAGCACCAAGGGG+CGG + chr3.3:31658061-31658080 None:intergenic 60.0%
GTTGGCGCGGCACAACAGAA+GGG + chr3.3:31657806-31657825 None:intergenic 60.0%
TGTTGGCGCGGCACAACAGA+AGG + chr3.3:31657807-31657826 None:intergenic 60.0%
!! CAGACTCGGTGGCTAGGTTC+AGG + chr3.3:31657101-31657120 None:intergenic 60.0%
GCGAGCGTATGGCTCGTGCT+TGG - chr3.3:31657196-31657215 MS.gene29406:CDS 65.0%
!! GTTGGCCGCCCCTTGGTGCT+TGG - chr3.3:31658053-31658072 MS.gene29406:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 31656904 31658340 31656904 ID=MS.gene29406
chr3.3 mRNA 31656904 31658340 31656904 ID=MS.gene29406.t1;Parent=MS.gene29406
chr3.3 exon 31656904 31658340 31656904 ID=MS.gene29406.t1.exon1;Parent=MS.gene29406.t1
chr3.3 CDS 31656904 31658340 31656904 ID=cds.MS.gene29406.t1;Parent=MS.gene29406.t1
Gene Sequence

>MS.gene29406

ATGTCAACTATTGTCTGCTTCATGCTTTCCAAACCAGAAAACCCTAACCGTGAAACACAATCTGAGTCTGACATAGTTTCTGCTCTCCGCTTTTTCCCTATTGTCTTCCTCCCTGTTTCTCTATCTCTTACCGATTCCATGGATCCTTCTCACCTCAATATTGCTGGTCTCACCCTTGCTGAAGAGGGTTTAACCCTGAACCTAGCCACCGAGTCTGAAACATCCACCATCCTTGATCACTGTTTGATTGGCCGTGTCTTAGCCGACCGTGAGATTCAGGCTGCCTATTTCAGCGAGCGTATGGCTCGTGCTTGGAAGCCAGGCAAGCGTGTTTCGATCGTCAAAACTGATTGTGACCGATTTCTGTTTCAATTTCATCACAAAATGGATGCTGCCCGTATTCTCGATGACGGTCCGTGGCTGTACGATAATCTCCACATCGTAATGGACCGTATGCAACCCGGTGTTGTCCCTGCCTCTATCGACCTGAACCATTTGGACATCTGGGTCCAGGTTCACGGTCTTCCTTTTGGCTGCATTCAACCAAATGTTGGTCACGACATAGGTAGCTTTCTAGGTGAACTCAAATCCTATGATGTCCGTAACTCTATCCATAGTACCTATATGCGTTTGAAAGTCCGTATTAATGTCACCACTCCTTTGAAGAAAGAATGGAAAGTCCGCGTCAGTAATGGTGCTTATGTTACATTAACTTTTAAATATGAGAAACTTGGAGTTTTTTGTTTCAGGTGCGGTTTGCTTGGACACACTGACAAGGTTTGCCCGGAGTTGTTCGAGTTGGAGTATGATGATGGTGTTCGCAATTGGGGCCCTGACCTGAAGCCTAATGCTGCCCGTATTGGTTTTGCTGCTAATAACAAATGGTTGCAAGACCCAATCCCTTCTGTTGTGCCGCGCCAACATGTTTATGCTGGTGTCTCTTCTGCTGGCCGAAACTCTCCTCCTAGTGGTACTGTCAATGCTGCGACTTTTAGTGACCGTATGCTTGCTGTTGACAATCAGATTTCTGCCCTCAAACATGATCTACTTGCTGCCCAAAATATTGTCAAAGCAAAACGTGACTCAGGTGCTTGTCAGATACATCTTTTACCTTCTTCTTCTACAGGTAACTCGGCTTCAAATTTGATTGTTGGCCGCCCCTTGGTGCTTGGATCACCTGCTGGACCGTTTCCTAATACCAACTCTGAGGAGTCTCAAGATGCTACTGGTTCTGAACTGAAGAAGAGAAAGAGGATGCTGGCTCTTCAGAATGGTGAAATTTCATCTTTTGCTGCTGATGGGGGTGAGGGAAATTTTGTAATAGGAACAAATGTTAGTCATGGGGGGGATGTTGATATGAATGTAATTTCTAATCCTCTGTTTGATGACACTGATGTAATGGCAGGCCTTGATGATCAGGCCTGCCTAGGTAAATGA

Protein sequence

>MS.gene29406.t1

MSTIVCFMLSKPENPNRETQSESDIVSALRFFPIVFLPVSLSLTDSMDPSHLNIAGLTLAEEGLTLNLATESETSTILDHCLIGRVLADREIQAAYFSERMARAWKPGKRVSIVKTDCDRFLFQFHHKMDAARILDDGPWLYDNLHIVMDRMQPGVVPASIDLNHLDIWVQVHGLPFGCIQPNVGHDIGSFLGELKSYDVRNSIHSTYMRLKVRINVTTPLKKEWKVRVSNGAYVTLTFKYEKLGVFCFRCGLLGHTDKVCPELFELEYDDGVRNWGPDLKPNAARIGFAANNKWLQDPIPSVVPRQHVYAGVSSAGRNSPPSGTVNAATFSDRMLAVDNQISALKHDLLAAQNIVKAKRDSGACQIHLLPSSSTGNSASNLIVGRPLVLGSPAGPFPNTNSEESQDATGSELKKRKRMLALQNGEISSFAADGGEGNFVIGTNVSHGGDVDMNVISNPLFDDTDVMAGLDDQACLGK