Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053747.t1 | XP_024630779.1 | 69.1 | 385 | 114 | 1 | 1 | 380 | 1 | 385 | 4.50E-146 | 527.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053747.t1 | A0A396JIW9 | 58.9 | 397 | 132 | 8 | 1 | 380 | 1 | 383 | 5.4e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053747.t1 | MTR_0010s0370 | 73.913 | 184 | 48 | 0 | 1 | 184 | 1 | 184 | 1.25e-97 | 288 |
| MS.gene053747.t1 | MTR_0010s0350 | 73.913 | 184 | 48 | 0 | 1 | 184 | 1 | 184 | 1.25e-97 | 288 |
| MS.gene053747.t1 | MTR_1g036720 | 74.775 | 111 | 28 | 0 | 1 | 111 | 1 | 111 | 1.72e-59 | 188 |
| MS.gene053747.t1 | MTR_1g036710 | 43.590 | 195 | 71 | 3 | 132 | 322 | 1 | 160 | 3.74e-40 | 144 |
| MS.gene053747.t1 | MTR_6g033215 | 30.769 | 182 | 120 | 3 | 20 | 199 | 117 | 294 | 6.91e-25 | 103 |
| MS.gene053747.t1 | MTR_7g089990 | 46.296 | 108 | 56 | 1 | 104 | 209 | 86 | 193 | 7.32e-20 | 87.8 |
| MS.gene053747.t1 | MTR_3g053920 | 33.333 | 138 | 75 | 2 | 34 | 171 | 36 | 156 | 3.97e-19 | 87.0 |
| MS.gene053747.t1 | MTR_2g061500 | 36.885 | 122 | 75 | 1 | 7 | 128 | 11 | 130 | 4.02e-17 | 77.8 |
| MS.gene053747.t1 | MTR_4g103530 | 40.449 | 89 | 53 | 0 | 57 | 145 | 5 | 93 | 3.70e-16 | 76.6 |
| MS.gene053747.t1 | MTR_1g051330 | 44.348 | 115 | 52 | 4 | 238 | 345 | 14 | 123 | 3.94e-15 | 77.4 |
| MS.gene053747.t1 | MTR_0488s0020 | 22.420 | 281 | 180 | 7 | 43 | 311 | 133 | 387 | 2.44e-12 | 68.6 |
| MS.gene053747.t1 | MTR_7g106180 | 26.207 | 145 | 100 | 2 | 34 | 175 | 26 | 166 | 7.92e-12 | 65.1 |
| MS.gene053747.t1 | MTR_3g024240 | 33.058 | 121 | 79 | 1 | 82 | 200 | 55 | 175 | 8.85e-11 | 61.2 |
| MS.gene053747.t1 | MTR_8g468010 | 39.394 | 66 | 39 | 1 | 120 | 184 | 6 | 71 | 8.86e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053747.t1 | AT3G31430 | 26.471 | 204 | 144 | 3 | 14 | 215 | 112 | 311 | 2.73e-18 | 85.5 |
| MS.gene053747.t1 | AT2G41590 | 26.728 | 217 | 147 | 5 | 4 | 215 | 9 | 218 | 2.05e-17 | 83.2 |
| MS.gene053747.t1 | AT5G36228 | 23.318 | 223 | 169 | 1 | 3 | 225 | 8 | 228 | 1.62e-16 | 80.5 |
| MS.gene053747.t1 | AT5G18636 | 25.463 | 216 | 151 | 4 | 4 | 215 | 9 | 218 | 2.43e-16 | 80.1 |
| MS.gene053747.t1 | AT5G25200 | 25.463 | 216 | 151 | 4 | 4 | 215 | 9 | 218 | 2.64e-16 | 80.1 |
| MS.gene053747.t1 | AT2G13450 | 25.688 | 218 | 148 | 4 | 4 | 215 | 9 | 218 | 3.17e-16 | 80.1 |
| MS.gene053747.t1 | AT3G57587 | 25.543 | 184 | 135 | 1 | 32 | 215 | 37 | 218 | 5.05e-16 | 79.3 |
| MS.gene053747.t1 | AT2G17920 | 26.389 | 216 | 149 | 5 | 4 | 215 | 9 | 218 | 8.19e-16 | 77.8 |
| MS.gene053747.t1 | AT2G02103 | 25.000 | 216 | 152 | 4 | 4 | 215 | 9 | 218 | 1.74e-15 | 77.8 |
| MS.gene053747.t1 | AT3G47920 | 31.250 | 144 | 91 | 3 | 75 | 215 | 9 | 147 | 2.11e-13 | 70.9 |
| MS.gene053747.t1 | AT4G02000 | 27.143 | 140 | 90 | 2 | 81 | 215 | 6 | 138 | 1.10e-12 | 68.6 |
| MS.gene053747.t1 | AT5G36225 | 31.111 | 90 | 62 | 0 | 121 | 210 | 17 | 106 | 6.03e-11 | 62.4 |
Find 85 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCCAATTTGTGCCGTTT+TGG | 0.219874 | 5.1:-46050559 | MS.gene053747:CDS |
| TGGAAAAGATTGAAACCTTT+TGG | 0.248061 | 5.1:-46050751 | MS.gene053747:CDS |
| TCAACTGCGGATTCCGTAAC+AGG | 0.251427 | 5.1:+46050069 | None:intergenic |
| CTGGTTCTACCTCTTGAATT+TGG | 0.260958 | 5.1:+46050711 | None:intergenic |
| CTTGATGTCCTTCCAGAAAA+TGG | 0.282882 | 5.1:-46050599 | MS.gene053747:CDS |
| GTTTGCTAAGTTGGCAGATT+TGG | 0.282991 | 5.1:+46050091 | None:intergenic |
| GAGATAATTCGAGTTGTTCT+TGG | 0.302396 | 5.1:+46050445 | None:intergenic |
| GAACCCAAAACGGCACAAAT+TGG | 0.344104 | 5.1:+46050555 | None:intergenic |
| GACCCTCACCTCCGTCTTGT+TGG | 0.361586 | 5.1:-46050815 | MS.gene053747:CDS |
| AATTCATTCTGAGTTGTTAC+AGG | 0.367813 | 5.1:-46049997 | MS.gene053747:CDS |
| CCGTAACAGGTTTGCTAAGT+TGG | 0.374230 | 5.1:+46050082 | None:intergenic |
| AAGGAAATTGCAAACTTCAT+TGG | 0.378123 | 5.1:-46050488 | MS.gene053747:CDS |
| TGAGGATTCTCTGTAGGTCT+AGG | 0.397183 | 5.1:+46050660 | None:intergenic |
| AACTGTTAAACCTTTGCTGC+TGG | 0.402633 | 5.1:+46050133 | None:intergenic |
| TTATTTCAAATAAACCAAAA+AGG | 0.408379 | 5.1:-46049956 | MS.gene053747:CDS |
| TGAATTTGGACACCTTTGAC+AGG | 0.420319 | 5.1:+46050725 | None:intergenic |
| AATTGGAGGTTTACCTGGCT+TGG | 0.438429 | 5.1:+46050572 | None:intergenic |
| CTGATGATGGAACAAGACTA+TGG | 0.442111 | 5.1:-46050232 | MS.gene053747:CDS |
| TTGTGAAAAGCTTTATTCCA+TGG | 0.453343 | 5.1:-46050258 | MS.gene053747:CDS |
| TGGTTTACTTGGTCATATTG+AGG | 0.456749 | 5.1:-46050285 | MS.gene053747:CDS |
| CCAACTTAGCAAACCTGTTA+CGG | 0.462585 | 5.1:-46050082 | MS.gene053747:CDS |
| TTTGCATTGTTTGTGATAGT+AGG | 0.464570 | 5.1:+46049873 | None:intergenic |
| CAAGTGCACGACATTTCAAC+AGG | 0.472341 | 5.1:-46050533 | MS.gene053747:CDS |
| TTGGCCGCTTCCTCACTAAC+CGG | 0.476388 | 5.1:-46050796 | MS.gene053747:CDS |
| CTTTCTTGAGGATTCTCTGT+AGG | 0.482296 | 5.1:+46050654 | None:intergenic |
| CCGCCCAGTCAATAATGATC+AGG | 0.484767 | 5.1:-46050042 | MS.gene053747:CDS |
| TATTCCATGGAATCTGATGA+TGG | 0.485852 | 5.1:-46050245 | MS.gene053747:CDS |
| GTTTGTGCAGGTATGTCATC+TGG | 0.494479 | 5.1:+46050842 | None:intergenic |
| AGAAAATGGTGTGCCAAGCC+AGG | 0.504282 | 5.1:-46050585 | MS.gene053747:CDS |
| TGTTCCATCATCAGATTCCA+TGG | 0.504402 | 5.1:+46050241 | None:intergenic |
| TCGTGCACTTGAACCCAAAA+CGG | 0.510201 | 5.1:+46050545 | None:intergenic |
| ACCTTTGACAGGGTTCCAAA+AGG | 0.510921 | 5.1:+46050736 | None:intergenic |
| GCACAAATTGGAGGTTTACC+TGG | 0.512024 | 5.1:+46050567 | None:intergenic |
| TGAGGGTCTGTGGTTTGTGC+AGG | 0.512257 | 5.1:+46050830 | None:intergenic |
| CTGCCTGATCATTATTGACT+GGG | 0.521774 | 5.1:+46050039 | None:intergenic |
| TGTTCTTGGCGTCATATTCG+AGG | 0.521779 | 5.1:+46050459 | None:intergenic |
| TATGAAGATCAGAGTCCTGA+TGG | 0.526288 | 5.1:-46050414 | MS.gene053747:CDS |
| GTGGCTTAGTAACATCCATC+AGG | 0.529918 | 5.1:+46050399 | None:intergenic |
| ATCATCATGTAGGATCGTAT+TGG | 0.531587 | 5.1:+46050773 | None:intergenic |
| CCCAAAACGGCACAAATTGG+AGG | 0.534423 | 5.1:+46050558 | None:intergenic |
| GGAGCCAAGCATTATTGAAA+CGG | 0.534511 | 5.1:+46048978 | None:intergenic |
| CAAATTCAAGAGGTAGAACC+AGG | 0.536479 | 5.1:-46050710 | MS.gene053747:CDS |
| CACTCAACGAGAGATGATGA+AGG | 0.539546 | 5.1:+46050891 | None:intergenic |
| AATACGATCCTACATGATGA+TGG | 0.539617 | 5.1:-46050771 | MS.gene053747:CDS |
| GTTATAGTTTCCAGCAGCAA+AGG | 0.540744 | 5.1:-46050143 | MS.gene053747:CDS |
| ACTGCCTGATCATTATTGAC+TGG | 0.541366 | 5.1:+46050038 | None:intergenic |
| TAGTAGGAATTGATGAGTGC+TGG | 0.545116 | 5.1:+46049889 | None:intergenic |
| CGATTCAAGTACGAGCGGCT+AGG | 0.549014 | 5.1:-46050326 | MS.gene053747:CDS |
| TGACACCTTTGAGACATCCA+TGG | 0.555787 | 5.1:+46049776 | None:intergenic |
| GGCCAACAAGACGGAGGTGA+GGG | 0.558506 | 5.1:+46050813 | None:intergenic |
| TCACCGGTGGTTCTTGCTGC+CGG | 0.563528 | 5.1:+46050168 | None:intergenic |
| AATACCATGGACCTTTCTTG+AGG | 0.563747 | 5.1:+46050642 | None:intergenic |
| GGACATCAAGGATCAAAAGA+TGG | 0.567659 | 5.1:+46050612 | None:intergenic |
| GACACCTTTGAGACATCCAT+GGG | 0.570426 | 5.1:+46049777 | None:intergenic |
| CGGCCAACAAGACGGAGGTG+AGG | 0.572004 | 5.1:+46050812 | None:intergenic |
| CTGGAAACTATAACTGTCAC+CGG | 0.572086 | 5.1:+46050152 | None:intergenic |
| AAGACGGAGGTGAGGGTCTG+TGG | 0.573089 | 5.1:+46050820 | None:intergenic |
| CTACAGAGAATCCTCAAGAA+AGG | 0.577250 | 5.1:-46050653 | MS.gene053747:CDS |
| CAATGACTCAACGACTCCCA+TGG | 0.578813 | 5.1:-46049793 | MS.gene053747:CDS |
| TTGGCCGGTTAGTGAGGAAG+CGG | 0.583738 | 5.1:+46050792 | None:intergenic |
| GGAATGGTGCGATTTGCAGT+TGG | 0.583851 | 5.1:+46049828 | None:intergenic |
| TCAGGCAGTTACAAAAGCTA+AGG | 0.585838 | 5.1:-46050024 | MS.gene053747:CDS |
| GACTCCCATGGATGTCTCAA+AGG | 0.589523 | 5.1:-46049781 | MS.gene053747:intron |
| ATCGTATTGGCCGGTTAGTG+AGG | 0.590416 | 5.1:+46050786 | None:intergenic |
| TCATCTCTCGTTGAGTGAAG+AGG | 0.605479 | 5.1:-46050885 | MS.gene053747:CDS |
| ACTGGGCGGCGCATCAACTG+CGG | 0.607849 | 5.1:+46050056 | None:intergenic |
| TCATGTAGGATCGTATTGGC+CGG | 0.608829 | 5.1:+46050777 | None:intergenic |
| CTCTGATCTTCATATATGAG+CGG | 0.614510 | 5.1:+46050423 | None:intergenic |
| GGATTCTCTGTAGGTCTAGG+TGG | 0.617802 | 5.1:+46050663 | None:intergenic |
| GTGCAGGTATGTCATCTGGT+AGG | 0.621427 | 5.1:+46050846 | None:intergenic |
| ATGGTGCGATTTGCAGTTGG+AGG | 0.622844 | 5.1:+46049831 | None:intergenic |
| GAATCCTCAAGAAAGGTCCA+TGG | 0.624128 | 5.1:-46050646 | MS.gene053747:CDS |
| CAAAGGTGTCCAAATTCAAG+AGG | 0.624142 | 5.1:-46050720 | MS.gene053747:CDS |
| TGAGGAAGCGGCCAACAAGA+CGG | 0.626222 | 5.1:+46050804 | None:intergenic |
| TCGCCGGCAGCAAGAACCAC+CGG | 0.628520 | 5.1:-46050171 | MS.gene053747:CDS |
| GAATTTGGACACCTTTGACA+GGG | 0.633819 | 5.1:+46050726 | None:intergenic |
| AAATTCAGAGAACAACTCGC+CGG | 0.642467 | 5.1:-46050187 | MS.gene053747:CDS |
| ACTCAACGAGAGATGATGAA+GGG | 0.644189 | 5.1:+46050892 | None:intergenic |
| AGATGGTTATCGAAATACCA+TGG | 0.644305 | 5.1:+46050629 | None:intergenic |
| TCTCTCGTTGAGTGAAGAGG+AGG | 0.649737 | 5.1:-46050882 | MS.gene053747:CDS |
| AATTGAAACGTATATAGACC+TGG | 0.663195 | 5.1:+46050692 | None:intergenic |
| CCTGATCATTATTGACTGGG+CGG | 0.704783 | 5.1:+46050042 | None:intergenic |
| ACATTCGATTCAAGTACGAG+CGG | 0.719589 | 5.1:-46050331 | MS.gene053747:CDS |
| GAAACTATAACTGTCACCGG+TGG | 0.725755 | 5.1:+46050155 | None:intergenic |
| GGAAGCGGCCAACAAGACGG+AGG | 0.736655 | 5.1:+46050807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTCAAATAAACCAAAA+AGG | - | chr5.1:46049932-46049951 | MS.gene053747:CDS | 15.0% |
| !! | TCAAAAAAAGATAAAGAAGT+CGG | - | chr5.1:46049519-46049538 | MS.gene053747:intron | 20.0% |
| !!! | TTACATTAACTTGTTAATAC+AGG | - | chr5.1:46050439-46050458 | MS.gene053747:CDS | 20.0% |
| ! | AAAATGATTGTCAAAACCAA+TGG | + | chr5.1:46050333-46050352 | None:intergenic | 25.0% |
| ! | AAATAAACCAAAAAGGTCAA+GGG | - | chr5.1:46049939-46049958 | MS.gene053747:CDS | 25.0% |
| ! | CAAAAAAAGATAAAGAAGTC+GGG | - | chr5.1:46049520-46049539 | MS.gene053747:intron | 25.0% |
| ! | CAGAAATGAATGTTATATCT+TGG | - | chr5.1:46050177-46050196 | MS.gene053747:CDS | 25.0% |
| ! | TCAATAAGAATTACAATGTC+CGG | + | chr5.1:46050269-46050288 | None:intergenic | 25.0% |
| ! | TTATTGGATATCAATTCACT+TGG | - | chr5.1:46050705-46050724 | MS.gene053747:CDS | 25.0% |
| !!! | TGGTTTTGACAATCATTTTT+CGG | - | chr5.1:46050334-46050353 | MS.gene053747:CDS | 25.0% |
| AAGAAGATGTAATTAGAGCA+CGG | + | chr5.1:46050775-46050794 | None:intergenic | 30.0% | |
| AAGGAAATTGCAAACTTCAT+TGG | - | chr5.1:46049400-46049419 | MS.gene053747:intron | 30.0% | |
| AATAAACCAAAAAGGTCAAG+GGG | - | chr5.1:46049940-46049959 | MS.gene053747:CDS | 30.0% | |
| AATTCATTCTGAGTTGTTAC+AGG | - | chr5.1:46049891-46049910 | MS.gene053747:CDS | 30.0% | |
| AATTGAAACGTATATAGACC+TGG | + | chr5.1:46049199-46049218 | None:intergenic | 30.0% | |
| CAAATAAACCAAAAAGGTCA+AGG | - | chr5.1:46049938-46049957 | MS.gene053747:CDS | 30.0% | |
| CTTATTGAAACACTAGTTCA+TGG | - | chr5.1:46050281-46050300 | MS.gene053747:CDS | 30.0% | |
| GATATAACATTCATTTCTGC+TGG | + | chr5.1:46050176-46050195 | None:intergenic | 30.0% | |
| GTCTTATGTCAGAAAAAGTA+GGG | - | chr5.1:46049377-46049396 | MS.gene053747:intron | 30.0% | |
| GTGAATTGATATCCAATAAG+AGG | + | chr5.1:46050704-46050723 | None:intergenic | 30.0% | |
| TTTGCATTGTTTGTGATAGT+AGG | + | chr5.1:46050018-46050037 | None:intergenic | 30.0% | |
| ! | AATCTTTTCCATCATCATGT+AGG | + | chr5.1:46049128-46049147 | None:intergenic | 30.0% |
| ! | TGGAAAAGATTGAAACCTTT+TGG | - | chr5.1:46049137-46049156 | MS.gene053747:intron | 30.0% |
| ! | TTCACTTGGTTCAAAAGTAT+TGG | - | chr5.1:46050719-46050738 | MS.gene053747:CDS | 30.0% |
| !! | TTGTGAAAAGCTTTATTCCA+TGG | - | chr5.1:46049630-46049649 | MS.gene053747:intron | 30.0% |
| AAAAAGATAAAGAAGTCGGG+AGG | - | chr5.1:46049523-46049542 | MS.gene053747:intron | 35.0% | |
| AAATCACCAATTATGCACCA+AGG | + | chr5.1:46050575-46050594 | None:intergenic | 35.0% | |
| AATACGATCCTACATGATGA+TGG | - | chr5.1:46049117-46049136 | MS.gene053747:intron | 35.0% | |
| AGATGGTTATCGAAATACCA+TGG | + | chr5.1:46049262-46049281 | None:intergenic | 35.0% | |
| ATCATCATGTAGGATCGTAT+TGG | + | chr5.1:46049118-46049137 | None:intergenic | 35.0% | |
| CTCTGATCTTCATATATGAG+CGG | + | chr5.1:46049468-46049487 | None:intergenic | 35.0% | |
| GTGCTCTAATTACATCTTCT+TGG | - | chr5.1:46050774-46050793 | MS.gene053747:CDS | 35.0% | |
| TATGTCAGAAAAAGTAGGGA+AGG | - | chr5.1:46049381-46049400 | MS.gene053747:intron | 35.0% | |
| TATTCCATGGAATCTGATGA+TGG | - | chr5.1:46049643-46049662 | MS.gene053747:intron | 35.0% | |
| TCTGATTTATGCTACACCAT+TGG | - | chr5.1:46050314-46050333 | MS.gene053747:CDS | 35.0% | |
| TGGTTTACTTGGTCATATTG+AGG | - | chr5.1:46049603-46049622 | MS.gene053747:intron | 35.0% | |
| TTAATACAGGACCCTACAAT+CGG | - | chr5.1:46050452-46050471 | MS.gene053747:CDS | 35.0% | |
| TTGTTCGATATGCCTCTTAT+TGG | - | chr5.1:46050689-46050708 | MS.gene053747:CDS | 35.0% | |
| ! | GGTCTTATGTCAGAAAAAGT+AGG | - | chr5.1:46049376-46049395 | MS.gene053747:intron | 35.0% |
| !! | ATTGTCGTTGTTTTCTGGAA+TGG | + | chr5.1:46050079-46050098 | None:intergenic | 35.0% |
| !! | CATTTTTCGGTTGATCGAAT+TGG | - | chr5.1:46050347-46050366 | MS.gene053747:CDS | 35.0% |
| !! | GAGATAATTCGAGTTGTTCT+TGG | + | chr5.1:46049446-46049465 | None:intergenic | 35.0% |
| !!! | AATTGATGAGTGCTGGTTTT+CGG | + | chr5.1:46049995-46050014 | None:intergenic | 35.0% |
| !!! | ATCTTTTTTTGACGCTTCAG+TGG | + | chr5.1:46049511-46049530 | None:intergenic | 35.0% |
| !!! | GGTAATTTCTGCTACTTTTG+TGG | - | chr5.1:46049583-46049602 | MS.gene053747:intron | 35.0% |
| !!! | GGTGTCAAGTCCTTTTTTAT+TGG | - | chr5.1:46050128-46050147 | MS.gene053747:CDS | 35.0% |
| !!! | TGCTACTTTTGTGGTTTACT+TGG | - | chr5.1:46049592-46049611 | MS.gene053747:intron | 35.0% |
| AAATTCAGAGAACAACTCGC+CGG | - | chr5.1:46049701-46049720 | MS.gene053747:intron | 40.0% | |
| AACTGTTAAACCTTTGCTGC+TGG | + | chr5.1:46049758-46049777 | None:intergenic | 40.0% | |
| AAGCCTCTAATAAGCCATGA+AGG | + | chr5.1:46050644-46050663 | None:intergenic | 40.0% | |
| AATACCATGGACCTTTCTTG+AGG | + | chr5.1:46049249-46049268 | None:intergenic | 40.0% | |
| ACATTCGATTCAAGTACGAG+CGG | - | chr5.1:46049557-46049576 | MS.gene053747:intron | 40.0% | |
| ACTCAACGAGAGATGATGAA+GGG | + | chr5.1:46048999-46049018 | None:intergenic | 40.0% | |
| ACTGCCTGATCATTATTGAC+TGG | + | chr5.1:46049853-46049872 | None:intergenic | 40.0% | |
| AGTTCCATCCATCAAAGACA+TGG | - | chr5.1:46050229-46050248 | MS.gene053747:CDS | 40.0% | |
| CAAATTCAAGAGGTAGAACC+AGG | - | chr5.1:46049178-46049197 | MS.gene053747:intron | 40.0% | |
| CAATGTCCGGTTTATAGACA+CGG | + | chr5.1:46050256-46050275 | None:intergenic | 40.0% | |
| CCAACTTAGCAAACCTGTTA+CGG | - | chr5.1:46049806-46049825 | MS.gene053747:CDS | 40.0% | |
| CTACAGAGAATCCTCAAGAA+AGG | - | chr5.1:46049235-46049254 | MS.gene053747:intron | 40.0% | |
| CTGGAAACTATAACTGTCAC+CGG | + | chr5.1:46049739-46049758 | None:intergenic | 40.0% | |
| CTTGATGTCCTTCCAGAAAA+TGG | - | chr5.1:46049289-46049308 | MS.gene053747:intron | 40.0% | |
| CTTTCTTGAGGATTCTCTGT+AGG | + | chr5.1:46049237-46049256 | None:intergenic | 40.0% | |
| GAATTTGGACACCTTTGACA+GGG | + | chr5.1:46049165-46049184 | None:intergenic | 40.0% | |
| GGACATCAAGGATCAAAAGA+TGG | + | chr5.1:46049279-46049298 | None:intergenic | 40.0% | |
| GTTATAGTTTCCAGCAGCAA+AGG | - | chr5.1:46049745-46049764 | MS.gene053747:intron | 40.0% | |
| GTTCTATGGATACTCAGACT+CGG | - | chr5.1:46050493-46050512 | MS.gene053747:CDS | 40.0% | |
| TAACATTCATTTCTGCTGGC+AGG | + | chr5.1:46050172-46050191 | None:intergenic | 40.0% | |
| TAATTAGAGCACGGTCAAGA+CGG | + | chr5.1:46050766-46050785 | None:intergenic | 40.0% | |
| TAGTAGGAATTGATGAGTGC+TGG | + | chr5.1:46050002-46050021 | None:intergenic | 40.0% | |
| TATGAAGATCAGAGTCCTGA+TGG | - | chr5.1:46049474-46049493 | MS.gene053747:intron | 40.0% | |
| TCAGGCAGTTACAAAAGCTA+AGG | - | chr5.1:46049864-46049883 | MS.gene053747:CDS | 40.0% | |
| TGAATTTGGACACCTTTGAC+AGG | + | chr5.1:46049166-46049185 | None:intergenic | 40.0% | |
| TGTTCCATCATCAGATTCCA+TGG | + | chr5.1:46049650-46049669 | None:intergenic | 40.0% | |
| TTCAACTTGACCCTATTCCT+TGG | - | chr5.1:46050867-46050886 | MS.gene053747:CDS | 40.0% | |
| TTCTATGGATACTCAGACTC+GGG | - | chr5.1:46050494-46050513 | MS.gene053747:CDS | 40.0% | |
| ! | AACGATCCTTGGTGCATAAT+TGG | - | chr5.1:46050566-46050585 | MS.gene053747:CDS | 40.0% |
| ! | CTGCCTGATCATTATTGACT+GGG | + | chr5.1:46049852-46049871 | None:intergenic | 40.0% |
| ! | GTTTGCTAAGTTGGCAGATT+TGG | + | chr5.1:46049800-46049819 | None:intergenic | 40.0% |
| !! | CAAAGGTGTCCAAATTCAAG+AGG | - | chr5.1:46049168-46049187 | MS.gene053747:intron | 40.0% |
| !! | CATTTTCTGGAAGGACATCA+AGG | + | chr5.1:46049291-46049310 | None:intergenic | 40.0% |
| !! | CTGATGATGGAACAAGACTA+TGG | - | chr5.1:46049656-46049675 | MS.gene053747:intron | 40.0% |
| !! | CTGGTTCTACCTCTTGAATT+TGG | + | chr5.1:46049180-46049199 | None:intergenic | 40.0% |
| !! | GAGTCATTGTCGTTGTTTTC+TGG | + | chr5.1:46050084-46050103 | None:intergenic | 40.0% |
| AATTAGAGCACGGTCAAGAC+GGG | + | chr5.1:46050765-46050784 | None:intergenic | 45.0% | |
| AATTGCGCCATAAGACAGCT+AGG | + | chr5.1:46050385-46050404 | None:intergenic | 45.0% | |
| AATTGGAGGTTTACCTGGCT+TGG | + | chr5.1:46049319-46049338 | None:intergenic | 45.0% | |
| ACCTTTGACAGGGTTCCAAA+AGG | + | chr5.1:46049155-46049174 | None:intergenic | 45.0% | |
| ATAAGCCATGAAGGACGTTC+AGG | + | chr5.1:46050635-46050654 | None:intergenic | 45.0% | |
| CAAGTGCACGACATTTCAAC+AGG | - | chr5.1:46049355-46049374 | MS.gene053747:intron | 45.0% | |
| CACTCAACGAGAGATGATGA+AGG | + | chr5.1:46049000-46049019 | None:intergenic | 45.0% | |
| CATGGTCCGTGTCTATAAAC+CGG | - | chr5.1:46050247-46050266 | MS.gene053747:CDS | 45.0% | |
| CCAGGCTCTGCCAATAAAAA+AGG | + | chr5.1:46050141-46050160 | None:intergenic | 45.0% | |
| CGTCCTTCATGGCTTATTAG+AGG | - | chr5.1:46050638-46050657 | MS.gene053747:CDS | 45.0% | |
| GAAACTATAACTGTCACCGG+TGG | + | chr5.1:46049736-46049755 | None:intergenic | 45.0% | |
| GAACCCAAAACGGCACAAAT+TGG | + | chr5.1:46049336-46049355 | None:intergenic | 45.0% | |
| GAATCCTCAAGAAAGGTCCA+TGG | - | chr5.1:46049242-46049261 | MS.gene053747:intron | 45.0% | |
| GCAATCTCTCTAACGATCCT+TGG | - | chr5.1:46050555-46050574 | MS.gene053747:CDS | 45.0% | |
| GCACAAATTGGAGGTTTACC+TGG | + | chr5.1:46049324-46049343 | None:intergenic | 45.0% | |
| GTGGCTTAGTAACATCCATC+AGG | + | chr5.1:46049492-46049511 | None:intergenic | 45.0% | |
| GTTATATCTTGGAACTGCCG+CGG | - | chr5.1:46050188-46050207 | MS.gene053747:CDS | 45.0% | |
| GTTGATCGAATTGGTCGAAG+CGG | - | chr5.1:46050356-46050375 | MS.gene053747:CDS | 45.0% | |
| GTTTGTGCAGGTATGTCATC+TGG | + | chr5.1:46049049-46049068 | None:intergenic | 45.0% | |
| TCATCTCTCGTTGAGTGAAG+AGG | - | chr5.1:46049003-46049022 | MS.gene053747:intron | 45.0% | |
| TCGTGCACTTGAACCCAAAA+CGG | + | chr5.1:46049346-46049365 | None:intergenic | 45.0% | |
| TCTATGGATACTCAGACTCG+GGG | - | chr5.1:46050495-46050514 | MS.gene053747:CDS | 45.0% | |
| TGAGGATTCTCTGTAGGTCT+AGG | + | chr5.1:46049231-46049250 | None:intergenic | 45.0% | |
| TGGAGACTCACAACGTTCTA+TGG | - | chr5.1:46050479-46050498 | MS.gene053747:CDS | 45.0% | |
| TGTTCTTGGCGTCATATTCG+AGG | + | chr5.1:46049432-46049451 | None:intergenic | 45.0% | |
| TTTCCACAACTGACAAGCGA+GGG | - | chr5.1:46050606-46050625 | MS.gene053747:CDS | 45.0% | |
| ! | AGTCTCCAGTTACCGATTGT+AGG | + | chr5.1:46050467-46050486 | None:intergenic | 45.0% |
| ! | CCTGATCATTATTGACTGGG+CGG | + | chr5.1:46049849-46049868 | None:intergenic | 45.0% |
| ! | GTCTCCAGTTACCGATTGTA+GGG | + | chr5.1:46050466-46050485 | None:intergenic | 45.0% |
| ! | TCATGTAGGATCGTATTGGC+CGG | + | chr5.1:46049114-46049133 | None:intergenic | 45.0% |
| ! | TTGATGCCCCTTGACCTTTT+TGG | + | chr5.1:46049949-46049968 | None:intergenic | 45.0% |
| ! | TTGGCACACCATTTTCTGGA+AGG | + | chr5.1:46049300-46049319 | None:intergenic | 45.0% |
| !! | CCGTAACAGGTTTGCTAAGT+TGG | + | chr5.1:46049809-46049828 | None:intergenic | 45.0% |
| !! | GACACCTTTGAGACATCCAT+GGG | + | chr5.1:46050114-46050133 | None:intergenic | 45.0% |
| !! | GGGTCAAGTTGAAGAAGAAG+TGG | + | chr5.1:46050860-46050879 | None:intergenic | 45.0% |
| !! | TGACACCTTTGAGACATCCA+TGG | + | chr5.1:46050115-46050134 | None:intergenic | 45.0% |
| !!! | ACCTCCAATTTGTGCCGTTT+TGG | - | chr5.1:46049329-46049348 | MS.gene053747:intron | 45.0% |
| !!! | ACCTTTTGGAACCCTGTCAA+AGG | - | chr5.1:46049151-46049170 | MS.gene053747:intron | 45.0% |
| !!! | CCTCCAATTTGTGCCGTTTT+GGG | - | chr5.1:46049330-46049349 | MS.gene053747:intron | 45.0% |
| !!! | CCTTTTTTATTGGCAGAGCC+TGG | - | chr5.1:46050138-46050157 | MS.gene053747:CDS | 45.0% |
| AAGCGTGGCATTCGGGAATA+AGG | + | chr5.1:46050804-46050823 | None:intergenic | 50.0% | |
| AAGTGGCGTGTGATCAGAAG+TGG | + | chr5.1:46050843-46050862 | None:intergenic | 50.0% | |
| AGAAAATGGTGTGCCAAGCC+AGG | - | chr5.1:46049303-46049322 | MS.gene053747:intron | 50.0% | |
| AGGACCCTACAATCGGTAAC+TGG | - | chr5.1:46050459-46050478 | MS.gene053747:CDS | 50.0% | |
| ATGGTGCGATTTGCAGTTGG+AGG | + | chr5.1:46050060-46050079 | None:intergenic | 50.0% | |
| CAATGACTCAACGACTCCCA+TGG | - | chr5.1:46050095-46050114 | MS.gene053747:CDS | 50.0% | |
| CCCAAAACGGCACAAATTGG+AGG | + | chr5.1:46049333-46049352 | None:intergenic | 50.0% | |
| CCGCCCAGTCAATAATGATC+AGG | - | chr5.1:46049846-46049865 | MS.gene053747:CDS | 50.0% | |
| CCTTAACATTTCCCAAGCCG+CGG | + | chr5.1:46050208-46050227 | None:intergenic | 50.0% | |
| CGGACCATGTCTTTGATGGA+TGG | + | chr5.1:46050236-46050255 | None:intergenic | 50.0% | |
| CTCGCTTGTCAGTTGTGGAA+AGG | + | chr5.1:46050607-46050626 | None:intergenic | 50.0% | |
| CTTTCCACAACTGACAAGCG+AGG | - | chr5.1:46050605-46050624 | MS.gene053747:CDS | 50.0% | |
| GACACGGACCATGTCTTTGA+TGG | + | chr5.1:46050240-46050259 | None:intergenic | 50.0% | |
| GACTCCCATGGATGTCTCAA+AGG | - | chr5.1:46050107-46050126 | MS.gene053747:CDS | 50.0% | |
| GAGGTTGACGCCAAGGAATA+GGG | + | chr5.1:46050880-46050899 | None:intergenic | 50.0% | |
| GGAATGGTGCGATTTGCAGT+TGG | + | chr5.1:46050063-46050082 | None:intergenic | 50.0% | |
| GGATTCTCTGTAGGTCTAGG+TGG | + | chr5.1:46049228-46049247 | None:intergenic | 50.0% | |
| GGGGAGAAGAAGAGAGTCTT+GGG | - | chr5.1:46050514-46050533 | MS.gene053747:CDS | 50.0% | |
| GTGCAGGTATGTCATCTGGT+AGG | + | chr5.1:46049045-46049064 | None:intergenic | 50.0% | |
| TCAACTGCGGATTCCGTAAC+AGG | + | chr5.1:46049822-46049841 | None:intergenic | 50.0% | |
| TCTCTCGTTGAGTGAAGAGG+AGG | - | chr5.1:46049006-46049025 | MS.gene053747:intron | 50.0% | |
| TGAGGTTGACGCCAAGGAAT+AGG | + | chr5.1:46050881-46050900 | None:intergenic | 50.0% | |
| TTCCACAACTGACAAGCGAG+GGG | - | chr5.1:46050607-46050626 | MS.gene053747:CDS | 50.0% | |
| TTGAAACGGAAGCTGCAGTG+AGG | + | chr5.1:46050899-46050918 | None:intergenic | 50.0% | |
| ! | AGAGTCTGAAGCGTGGCATT+CGG | + | chr5.1:46050812-46050831 | None:intergenic | 50.0% |
| ! | ATCGTATTGGCCGGTTAGTG+AGG | + | chr5.1:46049105-46049124 | None:intergenic | 50.0% |
| !! | TGGCTTGGCACACCATTTTC+TGG | + | chr5.1:46049304-46049323 | None:intergenic | 50.0% |
| CGATTCAAGTACGAGCGGCT+AGG | - | chr5.1:46049562-46049581 | MS.gene053747:intron | 55.0% | |
| CGGGGAGAAGAAGAGAGTCT+TGG | - | chr5.1:46050513-46050532 | MS.gene053747:CDS | 55.0% | |
| GATCGAATTGGTCGAAGCGG+CGG | - | chr5.1:46050359-46050378 | MS.gene053747:CDS | 55.0% | |
| TCCACAACTGACAAGCGAGG+GGG | - | chr5.1:46050608-46050627 | MS.gene053747:CDS | 55.0% | |
| TGAGGAAGCGGCCAACAAGA+CGG | + | chr5.1:46049087-46049106 | None:intergenic | 55.0% | |
| TGCCACGCTTCAGACTCTTG+TGG | - | chr5.1:46050814-46050833 | MS.gene053747:CDS | 55.0% | |
| TTCATTTCTGCTGGCAGGCC+TGG | + | chr5.1:46050167-46050186 | None:intergenic | 55.0% | |
| TTGGCCGCTTCCTCACTAAC+CGG | - | chr5.1:46049092-46049111 | MS.gene053747:intron | 55.0% | |
| TTGGCCGGTTAGTGAGGAAG+CGG | + | chr5.1:46049099-46049118 | None:intergenic | 55.0% | |
| ! | AAGACGGGCTTCTTTGGAGG+AGG | + | chr5.1:46050750-46050769 | None:intergenic | 55.0% |
| ! | ACGGTCAAGACGGGCTTCTT+TGG | + | chr5.1:46050756-46050775 | None:intergenic | 55.0% |
| ! | AGCCACAAGAGTCTGAAGCG+TGG | + | chr5.1:46050819-46050838 | None:intergenic | 55.0% |
| ! | CCGCGGCTTGGGAAATGTTA+AGG | - | chr5.1:46050205-46050224 | MS.gene053747:CDS | 55.0% |
| ! | GAGTCTGAAGCGTGGCATTC+GGG | + | chr5.1:46050811-46050830 | None:intergenic | 55.0% |
| ! | GTCAAGACGGGCTTCTTTGG+AGG | + | chr5.1:46050753-46050772 | None:intergenic | 55.0% |
| ! | TGAGGGTCTGTGGTTTGTGC+AGG | + | chr5.1:46049061-46049080 | None:intergenic | 55.0% |
| AAGACGGAGGTGAGGGTCTG+TGG | + | chr5.1:46049071-46049090 | None:intergenic | 60.0% | |
| ACCCCCTCGCTTGTCAGTTG+TGG | + | chr5.1:46050612-46050631 | None:intergenic | 60.0% | |
| ATCTTGGAACTGCCGCGGCT+TGG | - | chr5.1:46050193-46050212 | MS.gene053747:CDS | 60.0% | |
| ATTGGCAGAGCCTGGCTTCC+AGG | - | chr5.1:46050146-46050165 | MS.gene053747:CDS | 60.0% | |
| CTGCAGTGAGGTTGACGCCA+AGG | + | chr5.1:46050887-46050906 | None:intergenic | 60.0% | |
| GACCCTCACCTCCGTCTTGT+TGG | - | chr5.1:46049073-46049092 | MS.gene053747:intron | 60.0% | |
| GGCCAACAAGACGGAGGTGA+GGG | + | chr5.1:46049078-46049097 | None:intergenic | 60.0% | |
| GGGGTCCTGAACGTCCTTCA+TGG | - | chr5.1:46050627-46050646 | MS.gene053747:CDS | 60.0% | |
| TCACCGGTGGTTCTTGCTGC+CGG | + | chr5.1:46049723-46049742 | None:intergenic | 60.0% | |
| TCTTGGAACTGCCGCGGCTT+GGG | - | chr5.1:46050194-46050213 | MS.gene053747:CDS | 60.0% | |
| ACTGGGCGGCGCATCAACTG+CGG | + | chr5.1:46049835-46049854 | None:intergenic | 65.0% | |
| CGGCCAACAAGACGGAGGTG+AGG | + | chr5.1:46049079-46049098 | None:intergenic | 65.0% | |
| GCGGCGGCCTAGCTGTCTTA+TGG | - | chr5.1:46050375-46050394 | MS.gene053747:CDS | 65.0% | |
| GGAAGCGGCCAACAAGACGG+AGG | + | chr5.1:46049084-46049103 | None:intergenic | 65.0% | |
| TCGCCGGCAGCAAGAACCAC+CGG | - | chr5.1:46049717-46049736 | MS.gene053747:intron | 65.0% | |
| TGCTGGCAGGCCTGGAAGCC+AGG | + | chr5.1:46050159-46050178 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 46048989 | 46050921 | 46048989 | ID=MS.gene053747 |
| chr5.1 | mRNA | 46048989 | 46050921 | 46048989 | ID=MS.gene053747.t1;Parent=MS.gene053747 |
| chr5.1 | exon | 46049782 | 46050921 | 46049782 | ID=MS.gene053747.t1.exon1;Parent=MS.gene053747.t1 |
| chr5.1 | CDS | 46049782 | 46050921 | 46049782 | ID=cds.MS.gene053747.t1;Parent=MS.gene053747.t1 |
| chr5.1 | exon | 46048989 | 46049003 | 46048989 | ID=MS.gene053747.t1.exon2;Parent=MS.gene053747.t1 |
| chr5.1 | CDS | 46048989 | 46049003 | 46048989 | ID=cds.MS.gene053747.t1;Parent=MS.gene053747.t1 |
| Gene Sequence |
| Protein sequence |
