AlfalfaGEDB | MS.gene42010

M. sativa cultivar XinJiangDaYe / MS.gene42010

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42010.t1	AES70414.1	65.8	292	75	3	1	292	1	267	2.00E-98	369

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42010.t1	G7J017	65.8	292	75	3	1	292	1	267	1.5e-98	369.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene83979	MS.gene42010	PPI
MS.gene42010	MS.gene60390	PPI
MS.gene45083	MS.gene42010	PPI
MS.gene42010	MS.gene039692	PPI
MS.gene85295	MS.gene42010	PPI
MS.gene47792	MS.gene42010	PPI
MS.gene46948	MS.gene42010	PPI
MS.gene98471	MS.gene42010	PPI
MS.gene028714	MS.gene42010	PPI
MS.gene049610	MS.gene42010	PPI
MS.gene038676	MS.gene42010	PPI
MS.gene060718	MS.gene42010	PPI
MS.gene042651	MS.gene42010	PPI
MS.gene93396	MS.gene42010	PPI
MS.gene05576	MS.gene42010	PPI
MS.gene42010	MS.gene057934	PPI
MS.gene52349	MS.gene42010	PPI
MS.gene05231	MS.gene42010	PPI
MS.gene42010	MS.gene37537	PPI
MS.gene42010	MS.gene024841	PPI
MS.gene98467	MS.gene42010	PPI
MS.gene42010	MS.gene069786	PPI
MS.gene010656	MS.gene42010	PPI
MS.gene037049	MS.gene42010	PPI
MS.gene42010	MS.gene025158	PPI
MS.gene40469	MS.gene42010	PPI
MS.gene041264	MS.gene42010	PPI
MS.gene41979	MS.gene42010	PPI
MS.gene42010	MS.gene27329	PPI
MS.gene024522	MS.gene42010	PPI
MS.gene42010	MS.gene41393	PPI
MS.gene64130	MS.gene42010	PPI
MS.gene050679	MS.gene42010	PPI
MS.gene42010	MS.gene016632	PPI
MS.gene20246	MS.gene42010	PPI
MS.gene055223	MS.gene42010	PPI
MS.gene016719	MS.gene42010	PPI
MS.gene010290	MS.gene42010	PPI
MS.gene071784	MS.gene42010	PPI
MS.gene053747	MS.gene42010	PPI
MS.gene061579	MS.gene42010	PPI
MS.gene76420	MS.gene42010	PPI
MS.gene071320	MS.gene42010	PPI
MS.gene65471	MS.gene42010	PPI
MS.gene42010	MS.gene043140	PPI
MS.gene061850	MS.gene42010	PPI
MS.gene42010	MS.gene03149	PPI
MS.gene26433	MS.gene42010	PPI
MS.gene34463	MS.gene42010	PPI
MS.gene22730	MS.gene42010	PPI
MS.gene42010	MS.gene29321	PPI
MS.gene073582	MS.gene42010	PPI
MS.gene042559	MS.gene42010	PPI
MS.gene058889	MS.gene42010	PPI
MS.gene98616	MS.gene42010	PPI
MS.gene53904	MS.gene42010	PPI
MS.gene08708	MS.gene42010	PPI
MS.gene42010	MS.gene24278	PPI
MS.gene69586	MS.gene42010	PPI
MS.gene042027	MS.gene42010	PPI
MS.gene85308	MS.gene42010	PPI
MS.gene42010	MS.gene34618	PPI
MS.gene69490	MS.gene42010	PPI
MS.gene42010	MS.gene59460	PPI
MS.gene42010	MS.gene060773	PPI
MS.gene015248	MS.gene42010	PPI
MS.gene34812	MS.gene42010	PPI
MS.gene44083	MS.gene42010	PPI
MS.gene42010	MS.gene08713	PPI
MS.gene42010	MS.gene038394	PPI
MS.gene55682	MS.gene42010	PPI
MS.gene04970	MS.gene42010	PPI
MS.gene08106	MS.gene42010	PPI
MS.gene42010	MS.gene019001	PPI
MS.gene51799	MS.gene42010	PPI
MS.gene58419	MS.gene42010	PPI
MS.gene42010	MS.gene24070	PPI
MS.gene067340	MS.gene42010	PPI
MS.gene42010	MS.gene055546	PPI
MS.gene23521	MS.gene42010	PPI
MS.gene049512	MS.gene42010	PPI
MS.gene29406	MS.gene42010	PPI
MS.gene86275	MS.gene42010	PPI
MS.gene05357	MS.gene42010	PPI
MS.gene42010	MS.gene44144	PPI
MS.gene87529	MS.gene42010	PPI
MS.gene004417	MS.gene42010	PPI
MS.gene04134	MS.gene42010	PPI
MS.gene062067	MS.gene42010	PPI
MS.gene42010	MS.gene068629	PPI
MS.gene57044	MS.gene42010	PPI
MS.gene42010	MS.gene009781	PPI
MS.gene89815	MS.gene42010	PPI
MS.gene39956	MS.gene42010	PPI
MS.gene017586	MS.gene42010	PPI
MS.gene71637	MS.gene42010	PPI
MS.gene09589	MS.gene42010	PPI
MS.gene42010	MS.gene21066	PPI
MS.gene42010	MS.gene98127	PPI
MS.gene42010	MS.gene003264	PPI
MS.gene057828	MS.gene42010	PPI
MS.gene034643	MS.gene42010	PPI
MS.gene66650	MS.gene42010	PPI
MS.gene037634	MS.gene42010	PPI
MS.gene42010	MS.gene49057	PPI
MS.gene71588	MS.gene42010	PPI
MS.gene42010	MS.gene018474	PPI
MS.gene42010	MS.gene048088	PPI
MS.gene42010	MS.gene86868	PPI
MS.gene04749	MS.gene42010	PPI
MS.gene42010	MS.gene96163	PPI
MS.gene027169	MS.gene42010	PPI
MS.gene42903	MS.gene42010	PPI
MS.gene81712	MS.gene42010	PPI
MS.gene026680	MS.gene42010	PPI
MS.gene021555	MS.gene42010	PPI
MS.gene42010	MS.gene012889	PPI
MS.gene048747	MS.gene42010	PPI
MS.gene42010	MS.gene34463	PPI
MS.gene22200	MS.gene42010	PPI
MS.gene019165	MS.gene42010	PPI
MS.gene42010	MS.gene61499	PPI
MS.gene26038	MS.gene42010	PPI
MS.gene94654	MS.gene42010	PPI
MS.gene42010	MS.gene81194	PPI
MS.gene073573	MS.gene42010	PPI
MS.gene031967	MS.gene42010	PPI
MS.gene053373	MS.gene42010	PPI
MS.gene02896	MS.gene42010	PPI
MS.gene063214	MS.gene42010	PPI
MS.gene97410	MS.gene42010	PPI
MS.gene83772	MS.gene42010	PPI
MS.gene32415	MS.gene42010	PPI
MS.gene009213	MS.gene42010	PPI
MS.gene035626	MS.gene42010	PPI
MS.gene42010	MS.gene53904	PPI
MS.gene63762	MS.gene42010	PPI
MS.gene42010	MS.gene025675	PPI
MS.gene65623	MS.gene42010	PPI
MS.gene71675	MS.gene42010	PPI
MS.gene019177	MS.gene42010	PPI
MS.gene028716	MS.gene42010	PPI
MS.gene69495	MS.gene42010	PPI
MS.gene038623	MS.gene42010	PPI
MS.gene55209	MS.gene42010	PPI
MS.gene032311	MS.gene42010	PPI
MS.gene64178	MS.gene42010	PPI
MS.gene030090	MS.gene42010	PPI
MS.gene96174	MS.gene42010	PPI
MS.gene42010	MS.gene022929	PPI
MS.gene018196	MS.gene42010	PPI
MS.gene42010	MS.gene007022	PPI
MS.gene86849	MS.gene42010	PPI
MS.gene50392	MS.gene42010	PPI
MS.gene072852	MS.gene42010	PPI
MS.gene57019	MS.gene42010	PPI
MS.gene42010	MS.gene048342	PPI
MS.gene03936	MS.gene42010	PPI
MS.gene021968	MS.gene42010	PPI
MS.gene42010	MS.gene069624	PPI
MS.gene42010	MS.gene013890	PPI
MS.gene43393	MS.gene42010	PPI
MS.gene34197	MS.gene42010	PPI
MS.gene42010	MS.gene88393	PPI
MS.gene008275	MS.gene42010	PPI
MS.gene42010	MS.gene69586	PPI
MS.gene42010	MS.gene45083	PPI
MS.gene038757	MS.gene42010	PPI
MS.gene42010	MS.gene008658	PPI
MS.gene005120	MS.gene42010	PPI
MS.gene048072	MS.gene42010	PPI
MS.gene060386	MS.gene42010	PPI
MS.gene05436	MS.gene42010	PPI
MS.gene059736	MS.gene42010	PPI
MS.gene42010	MS.gene08708	PPI
MS.gene70932	MS.gene42010	PPI
MS.gene047954	MS.gene42010	PPI
MS.gene35175	MS.gene42010	PPI
MS.gene025675	MS.gene42010	PPI
MS.gene054652	MS.gene42010	PPI
MS.gene021965	MS.gene42010	PPI
MS.gene055683	MS.gene42010	PPI
MS.gene042614	MS.gene42010	PPI
MS.gene41643	MS.gene42010	PPI
MS.gene013890	MS.gene42010	PPI
MS.gene26844	MS.gene42010	PPI
MS.gene42010	MS.gene000640	PPI
MS.gene021647	MS.gene42010	PPI
MS.gene66651	MS.gene42010	PPI
MS.gene96109	MS.gene42010	PPI
MS.gene048706	MS.gene42010	PPI
MS.gene051449	MS.gene42010	PPI
MS.gene42010	MS.gene74639	PPI
MS.gene42010	MS.gene071133	PPI
MS.gene42010	MS.gene60266	PPI
MS.gene009121	MS.gene42010	PPI
MS.gene42010	MS.gene54051	PPI
MS.gene51804	MS.gene42010	PPI
MS.gene42010	MS.gene010290	PPI
MS.gene87845	MS.gene42010	PPI
MS.gene36069	MS.gene42010	PPI
MS.gene42010	MS.gene37955	PPI
MS.gene30136	MS.gene42010	PPI
MS.gene42010	MS.gene92517	PPI
MS.gene61452	MS.gene42010	PPI
MS.gene42010	MS.gene010890	PPI
MS.gene42010	MS.gene84790	PPI
MS.gene008927	MS.gene42010	PPI
MS.gene016102	MS.gene42010	PPI
MS.gene46941	MS.gene42010	PPI
MS.gene045614	MS.gene42010	PPI
MS.gene96541	MS.gene42010	PPI
MS.gene049561	MS.gene42010	PPI
MS.gene000634	MS.gene42010	PPI
MS.gene30208	MS.gene42010	PPI
MS.gene025873	MS.gene42010	PPI
MS.gene012019	MS.gene42010	PPI
MS.gene06164	MS.gene42010	PPI
MS.gene42010	MS.gene060788	PPI
MS.gene013676	MS.gene42010	PPI
MS.gene42010	MS.gene77990	PPI
MS.gene05358	MS.gene42010	PPI
MS.gene42010	MS.gene062511	PPI
MS.gene42010	MS.gene027994	PPI
MS.gene95561	MS.gene42010	PPI
MS.gene074257	MS.gene42010	PPI
MS.gene065627	MS.gene42010	PPI
MS.gene42010	MS.gene69584	PPI
MS.gene018745	MS.gene42010	PPI
MS.gene000629	MS.gene42010	PPI
MS.gene65546	MS.gene42010	PPI
MS.gene059269	MS.gene42010	PPI
MS.gene000506	MS.gene42010	PPI
MS.gene42010	MS.gene46353	PPI
MS.gene05319	MS.gene42010	PPI
MS.gene038098	MS.gene42010	PPI
MS.gene56991	MS.gene42010	PPI
MS.gene60059	MS.gene42010	PPI
MS.gene42010	MS.gene61651	PPI
MS.gene85538	MS.gene42010	PPI
MS.gene22111	MS.gene42010	PPI
MS.gene28545	MS.gene42010	PPI
MS.gene28718	MS.gene42010	PPI
MS.gene42010	MS.gene09023	PPI
MS.gene055560	MS.gene42010	PPI
MS.gene42010	MS.gene054508	PPI
MS.gene42010	MS.gene025987	PPI
MS.gene42010	MS.gene95960	PPI
MS.gene42010	MS.gene053373	PPI
MS.gene064966	MS.gene42010	PPI
MS.gene002590	MS.gene42010	PPI
MS.gene42010	MS.gene65474	PPI
MS.gene42010	MS.gene025401	PPI
MS.gene42010	MS.gene015093	PPI
MS.gene40828	MS.gene42010	PPI
MS.gene43924	MS.gene42010	PPI
MS.gene046089	MS.gene42010	PPI
MS.gene036423	MS.gene42010	PPI
MS.gene42010	MS.gene000379	PPI
MS.gene42010	MS.gene032299	PPI
MS.gene013644	MS.gene42010	PPI
MS.gene42010	MS.gene08606	PPI
MS.gene80362	MS.gene42010	PPI
MS.gene72520	MS.gene42010	PPI
MS.gene013193	MS.gene42010	PPI
MS.gene42010	MS.gene09517	PPI
MS.gene42010	MS.gene98756	PPI
MS.gene35202	MS.gene42010	PPI
MS.gene019001	MS.gene42010	PPI
MS.gene63743	MS.gene42010	PPI
MS.gene42010	MS.gene62249	PPI
MS.gene63150	MS.gene42010	PPI
MS.gene48477	MS.gene42010	PPI
MS.gene045875	MS.gene42010	PPI
MS.gene008861	MS.gene42010	PPI
MS.gene024405	MS.gene42010	PPI
MS.gene73261	MS.gene42010	PPI
MS.gene012748	MS.gene42010	PPI
MS.gene024297	MS.gene42010	PPI
MS.gene42010	MS.gene044729	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42010.t1	MTR_3g053920	65.753	292	75	3	1	292	1	267	5.58e-128	365
MS.gene42010.t1	MTR_4g103530	56.522	230	63	5	55	284	1	193	3.30e-79	238
MS.gene42010.t1	MTR_2g061500	80.620	129	25	0	1	129	1	129	2.18e-73	222
MS.gene42010.t1	MTR_7g011710	69.412	85	26	0	55	139	1	85	3.47e-37	130
MS.gene42010.t1	MTR_0010s0370	34.320	169	107	2	8	172	4	172	9.89e-25	98.6
MS.gene42010.t1	MTR_0010s0350	34.320	169	107	2	8	172	4	172	9.89e-25	98.6
MS.gene42010.t1	MTR_6g033215	32.168	143	95	1	31	171	124	266	4.97e-23	96.7
MS.gene42010.t1	MTR_1g036720	31.193	109	73	1	7	113	3	111	2.08e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 75 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGCCTGCAGCAGTGTTGTTT+TGG	0.243682	6.4:+17135523	None:intergenic
CGACATGCACTCACTGAAAT+AGG	0.262134	6.4:+17136157	None:intergenic
TAGACTCGGTTTCAAGGTTT+AGG	0.264551	6.4:+17136246	None:intergenic
CATGTTTGATTGCAGTTATC+TGG	0.275190	6.4:+17135421	None:intergenic
AACCCGTTTGACTGGCTTCC+AGG	0.282248	6.4:+17136130	None:intergenic
TCCTATACCTTGACCTACTT+TGG	0.291760	6.4:+17135896	None:intergenic
CCTATACCTTGACCTACTTT+GGG	0.307333	6.4:+17135897	None:intergenic
CAAGTCCATGGTCTTCCATT+TGG	0.332640	6.4:-17135930	MS.gene42010:CDS
AGACTCGGTTTCAAGGTTTA+GGG	0.340235	6.4:+17136247	None:intergenic
CTGATGATGGTGTTAGAAAC+TGG	0.347519	6.4:-17135635	MS.gene42010:CDS
TTCCTGCCTTCTTCTTCAAC+AGG	0.352971	6.4:-17135327	MS.gene42010:CDS
AAGTCAGACCAGCAAGGTTA+AGG	0.387193	6.4:+17136288	None:intergenic
AAGAAGGCAGGAAGTTCATT+TGG	0.389201	6.4:+17135337	None:intergenic
AGCATTATGTCATTAAAATT+CGG	0.391563	6.4:+17135456	None:intergenic
ACCTTTGAGCAGCAGGCTTT+AGG	0.392802	6.4:+17135604	None:intergenic
CCCACAAACCTTAACCTTGC+TGG	0.399096	6.4:-17136296	MS.gene42010:CDS
ACCAGCAAGGTTAAGGTTTG+TGG	0.408204	6.4:+17136295	None:intergenic
TGATGCGCATATAGGCGATA+TGG	0.410568	6.4:+17135829	None:intergenic
GTGATTCAAGGGCACAAAGC+TGG	0.417074	6.4:+17135968	None:intergenic
TACCTTGACCTACTTTGGGT+TGG	0.420793	6.4:+17135901	None:intergenic
TGATTGCAGTTATCTGGCTC+TGG	0.431336	6.4:+17135427	None:intergenic
AAGCCTGCTGCTCAAAGGTT+TGG	0.439011	6.4:-17135600	MS.gene42010:CDS
GATCGATCAAACAGTGTTCA+AGG	0.447328	6.4:+17136210	None:intergenic
AGCCAAAACAACACTGCTGC+AGG	0.447610	6.4:-17135525	MS.gene42010:CDS
GTGTCCGGAGCTGTACGAAT+TGG	0.456048	6.4:-17135661	MS.gene42010:CDS
GTACCAAACCTTTGAGCAGC+AGG	0.456330	6.4:+17135597	None:intergenic
GTGAGTGCATGTCGCGTGCC+TGG	0.458045	6.4:-17136148	MS.gene42010:CDS
GTGATTGTAACCCGTTTGAC+TGG	0.460379	6.4:+17136122	None:intergenic
GTTAAGGTTTGTGGGATCCA+TGG	0.466327	6.4:+17136304	None:intergenic
CCAGCAAGGTTAAGGTTTGT+GGG	0.467296	6.4:+17136296	None:intergenic
TCATACGGACAAGGTGTGTC+CGG	0.469030	6.4:-17135676	MS.gene42010:intron
TCGGCATAACTGCAGGGATC+AGG	0.469801	6.4:+17135547	None:intergenic
ACAAAGCTGGGAACCACGCC+AGG	0.484755	6.4:+17135981	None:intergenic
GCCAAAGCAAAACAAGGTAC+TGG	0.489649	6.4:-17135375	MS.gene42010:CDS
TGCCTGGAAGCCAGTCAAAC+GGG	0.491071	6.4:-17136132	MS.gene42010:CDS
TCCCTGTTGAAGAAGAAGGC+AGG	0.491114	6.4:+17135325	None:intergenic
CCCAAAGTAGGTCAAGGTAT+AGG	0.492936	6.4:-17135897	MS.gene42010:CDS
ACTCACTGAAATAGGCAAAC+TGG	0.494488	6.4:+17136165	None:intergenic
GGTCTGACTTTGTTTGAAGA+GGG	0.495400	6.4:-17136275	MS.gene42010:CDS
CTTGTTTCAGTTTCACCACA+AGG	0.499653	6.4:-17136078	MS.gene42010:CDS
TGATTCAAGGGCACAAAGCT+GGG	0.499882	6.4:+17135969	None:intergenic
TTGGGTTGGATGAAACCAAA+TGG	0.500680	6.4:+17135915	None:intergenic
GTGCCTGGAAGCCAGTCAAA+CGG	0.507895	6.4:-17136133	MS.gene42010:CDS
TTAAGGTTTGTGGGATCCAT+GGG	0.508210	6.4:+17136305	None:intergenic
AGCCACTCTGATGCGCATAT+AGG	0.509742	6.4:+17135821	None:intergenic
TGGTCTGACTTTGTTTGAAG+AGG	0.510275	6.4:-17136276	MS.gene42010:CDS
GGTTTCATCCAACCCAAAGT+AGG	0.516131	6.4:-17135909	MS.gene42010:CDS
TAGTTCCCTGTTGAAGAAGA+AGG	0.548234	6.4:+17135321	None:intergenic
CAGAGTGGCTATTGTTGTCA+CGG	0.552236	6.4:-17135808	MS.gene42010:intron
GAGTCCAATTCGTACAGCTC+CGG	0.554312	6.4:+17135657	None:intergenic
TACGAATTGGACTCTGATGA+TGG	0.554986	6.4:-17135648	MS.gene42010:CDS
CAGGTCTTGTAGCCAACGGT+TGG	0.560532	6.4:+17135566	None:intergenic
ACCTAAAGCCTGCTGCTCAA+AGG	0.564172	6.4:-17135605	MS.gene42010:CDS
GTACTGCTGCAACCAACCGT+TGG	0.564613	6.4:-17135578	MS.gene42010:CDS
TGATGATGGTGTTAGAAACT+GGG	0.574277	6.4:-17135634	MS.gene42010:CDS
TTTGGCTCGGCATAACTGCA+GGG	0.591869	6.4:+17135541	None:intergenic
ATCCAACCCAAAGTAGGTCA+AGG	0.592927	6.4:-17135903	MS.gene42010:CDS
GCGTCTCGCGTTCTCGACGA+AGG	0.594401	6.4:-17136050	MS.gene42010:CDS
GCGTTCTCGACGAAGGTCTG+TGG	0.605439	6.4:-17136043	MS.gene42010:CDS
TCCTGCCTTCTTCTTCAACA+GGG	0.611697	6.4:-17135326	MS.gene42010:CDS
TTGAGCAGCAGGCTTTAGGT+AGG	0.612582	6.4:+17135608	None:intergenic
GCTATGGATCGAATCAAACC+TGG	0.615465	6.4:-17135999	MS.gene42010:CDS
GGATCGAATCAAACCTGGCG+TGG	0.619073	6.4:-17135994	MS.gene42010:CDS
CGCGAGACGCATCCACCTTG+TGG	0.621331	6.4:+17136063	None:intergenic
ACTGGATTTCACGATTAGCA+AGG	0.637427	6.4:+17136183	None:intergenic
ATCGCTGCCAAAGCAAAACA+AGG	0.638892	6.4:-17135381	MS.gene42010:CDS
CAAAACAACACTGCTGCAGG+CGG	0.642388	6.4:-17135522	MS.gene42010:CDS
GGATCAGGTCTTGTAGCCAA+CGG	0.644609	6.4:+17135562	None:intergenic
TGAAACCAAATGGAAGACCA+TGG	0.650045	6.4:+17135925	None:intergenic
CGCCTATATGCGCATCAGAG+TGG	0.650624	6.4:-17135823	MS.gene42010:CDS
CAAACAAAGTCAGACCAGCA+AGG	0.678659	6.4:+17136282	None:intergenic
GTTACAATCACAAAGTCTGT+CGG	0.679946	6.4:-17136110	MS.gene42010:CDS
GTTTCAGTTTCACCACAAGG+TGG	0.690439	6.4:-17136075	MS.gene42010:CDS
GATGATGGTGTTAGAAACTG+GGG	0.692453	6.4:-17135633	MS.gene42010:CDS
GGTACTCTTAAGGCATACGA+TGG	0.724968	6.4:-17135864	MS.gene42010:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTTAAATATGAGAAATT+GGG	-	chr6.4:17135893-17135912	MS.gene42010:CDS	10.0%
!!!	TAATTTTAAATATGAGAAAT+TGG	-	chr6.4:17135892-17135911	MS.gene42010:CDS	10.0%
!!	AGCATTATGTCATTAAAATT+CGG	+	chr6.4:17136169-17136188	None:intergenic	20.0%
!!!	TGATAATTTTCATATTGCTA+TGG	-	chr6.4:17135607-17135626	MS.gene42010:CDS	20.0%
	CAAAAATCGATGTGATTCAA+GGG	+	chr6.4:17135668-17135687	None:intergenic	30.0%
!	AAGTTTTCTAGGTACTCTTA+AGG	-	chr6.4:17135748-17135767	MS.gene42010:intron	30.0%
!!!	CTTGAATCACATCGATTTTT+GGG	-	chr6.4:17135667-17135686	MS.gene42010:intron	30.0%
	CATGTTTGATTGCAGTTATC+TGG	+	chr6.4:17136204-17136223	None:intergenic	35.0%
	CCAAAAATCGATGTGATTCA+AGG	+	chr6.4:17135669-17135688	None:intergenic	35.0%
	GTTACAATCACAAAGTCTGT+CGG	-	chr6.4:17135512-17135531	MS.gene42010:CDS	35.0%
!	CAAGGTATAGGAAGTTTTCT+AGG	-	chr6.4:17135737-17135756	MS.gene42010:intron	35.0%
!!	TGATGATGGTGTTAGAAACT+GGG	-	chr6.4:17135988-17136007	MS.gene42010:CDS	35.0%
!!!	AATTGGGTGTTTTTTGTCAC+AGG	-	chr6.4:17135909-17135928	MS.gene42010:CDS	35.0%
!!!	ACACGTCATTCTTTTTTCAG+AGG	+	chr6.4:17135842-17135861	None:intergenic	35.0%
!!!	CCTTGAATCACATCGATTTT+TGG	-	chr6.4:17135666-17135685	MS.gene42010:CDS	35.0%
!!!	GATAGCAGTAGTTTTAGACT+CGG	+	chr6.4:17135393-17135412	None:intergenic	35.0%
!!!	TAGTTTTAGACTCGGTTTCA+AGG	+	chr6.4:17135385-17135404	None:intergenic	35.0%
	AAGAAGGCAGGAAGTTCATT+TGG	+	chr6.4:17136288-17136307	None:intergenic	40.0%
	ACTCACTGAAATAGGCAAAC+TGG	+	chr6.4:17135460-17135479	None:intergenic	40.0%
	ACTGGATTTCACGATTAGCA+AGG	+	chr6.4:17135442-17135461	None:intergenic	40.0%
	CCTATACCTTGACCTACTTT+GGG	+	chr6.4:17135728-17135747	None:intergenic	40.0%
	CTTGTTTCAGTTTCACCACA+AGG	-	chr6.4:17135544-17135563	MS.gene42010:CDS	40.0%
	GATCGATCAAACAGTGTTCA+AGG	+	chr6.4:17135415-17135434	None:intergenic	40.0%
	TACGAATTGGACTCTGATGA+TGG	-	chr6.4:17135974-17135993	MS.gene42010:CDS	40.0%
	TAGTTCCCTGTTGAAGAAGA+AGG	+	chr6.4:17136304-17136323	None:intergenic	40.0%
	TCCTATACCTTGACCTACTT+TGG	+	chr6.4:17135729-17135748	None:intergenic	40.0%
	TGAAACCAAATGGAAGACCA+TGG	+	chr6.4:17135700-17135719	None:intergenic	40.0%
!	AGACTCGGTTTCAAGGTTTA+GGG	+	chr6.4:17135378-17135397	None:intergenic	40.0%
!	GATGATGGTGTTAGAAACTG+GGG	-	chr6.4:17135989-17136008	MS.gene42010:CDS	40.0%
!	GGTCTGACTTTGTTTGAAGA+GGG	-	chr6.4:17135347-17135366	MS.gene42010:CDS	40.0%
!	TAGACTCGGTTTCAAGGTTT+AGG	+	chr6.4:17135379-17135398	None:intergenic	40.0%
!	TGGTCTGACTTTGTTTGAAG+AGG	-	chr6.4:17135346-17135365	MS.gene42010:CDS	40.0%
!!	CTGATGATGGTGTTAGAAAC+TGG	-	chr6.4:17135987-17136006	MS.gene42010:CDS	40.0%
!!	TTGGGTTGGATGAAACCAAA+TGG	+	chr6.4:17135710-17135729	None:intergenic	40.0%
!!!	ACCAGTACCTTGTTTTGCTT+TGG	+	chr6.4:17136251-17136270	None:intergenic	40.0%
	AAGTCAGACCAGCAAGGTTA+AGG	+	chr6.4:17135337-17135356	None:intergenic	45.0%
	ACCAGCAAGGTTAAGGTTTG+TGG	+	chr6.4:17135330-17135349	None:intergenic	45.0%
	ATCCAACCCAAAGTAGGTCA+AGG	-	chr6.4:17135719-17135738	MS.gene42010:intron	45.0%
	ATCGCTGCCAAAGCAAAACA+AGG	-	chr6.4:17136241-17136260	MS.gene42010:CDS	45.0%
	CAAACAAAGTCAGACCAGCA+AGG	+	chr6.4:17135343-17135362	None:intergenic	45.0%
	CAAGTCCATGGTCTTCCATT+TGG	-	chr6.4:17135692-17135711	MS.gene42010:intron	45.0%
	CAGAGTGGCTATTGTTGTCA+CGG	-	chr6.4:17135814-17135833	MS.gene42010:CDS	45.0%
	CCAGCAAGGTTAAGGTTTGT+GGG	+	chr6.4:17135329-17135348	None:intergenic	45.0%
	CCCAAAGTAGGTCAAGGTAT+AGG	-	chr6.4:17135725-17135744	MS.gene42010:intron	45.0%
	CGACATGCACTCACTGAAAT+AGG	+	chr6.4:17135468-17135487	None:intergenic	45.0%
	CTTGCTTAGTCATACGGACA+AGG	-	chr6.4:17135937-17135956	MS.gene42010:CDS	45.0%
	GCCAAAGCAAAACAAGGTAC+TGG	-	chr6.4:17136247-17136266	MS.gene42010:CDS	45.0%
	GCTATGGATCGAATCAAACC+TGG	-	chr6.4:17135623-17135642	MS.gene42010:CDS	45.0%
	GGTACTCTTAAGGCATACGA+TGG	-	chr6.4:17135758-17135777	MS.gene42010:intron	45.0%
	GGTTTCATCCAACCCAAAGT+AGG	-	chr6.4:17135713-17135732	MS.gene42010:intron	45.0%
	GTGATTGTAACCCGTTTGAC+TGG	+	chr6.4:17135503-17135522	None:intergenic	45.0%
	GTTTCAGTTTCACCACAAGG+TGG	-	chr6.4:17135547-17135566	MS.gene42010:CDS	45.0%
	TACCTTGACCTACTTTGGGT+TGG	+	chr6.4:17135724-17135743	None:intergenic	45.0%
	TCCTGCCTTCTTCTTCAACA+GGG	-	chr6.4:17136296-17136315	MS.gene42010:CDS	45.0%
	TGACGTGTACGTGCTAGTAA+CGG	-	chr6.4:17135854-17135873	MS.gene42010:CDS	45.0%
	TGATGCGCATATAGGCGATA+TGG	+	chr6.4:17135796-17135815	None:intergenic	45.0%
	TTCCTGCCTTCTTCTTCAAC+AGG	-	chr6.4:17136295-17136314	MS.gene42010:CDS	45.0%
!	TGATTCAAGGGCACAAAGCT+GGG	+	chr6.4:17135656-17135675	None:intergenic	45.0%
!	TGATTGCAGTTATCTGGCTC+TGG	+	chr6.4:17136198-17136217	None:intergenic	45.0%
!	TTTTGCTTTGGCAGCGATCT+GGG	+	chr6.4:17136239-17136258	None:intergenic	45.0%
!!!	GATTTTTGGGTGCAAGTCCA+TGG	-	chr6.4:17135680-17135699	MS.gene42010:intron	45.0%
!!!	GGTGTTTTTTGTCACAGGTG+CGG	-	chr6.4:17135914-17135933	MS.gene42010:CDS	45.0%
	AAGCCTGCTGCTCAAAGGTT+TGG	-	chr6.4:17136022-17136041	MS.gene42010:CDS	50.0%
	ACCTAAAGCCTGCTGCTCAA+AGG	-	chr6.4:17136017-17136036	MS.gene42010:CDS	50.0%
	ACCTTTGAGCAGCAGGCTTT+AGG	+	chr6.4:17136021-17136040	None:intergenic	50.0%
	AGCCAAAACAACACTGCTGC+AGG	-	chr6.4:17136097-17136116	MS.gene42010:CDS	50.0%
	AGCCACTCTGATGCGCATAT+AGG	+	chr6.4:17135804-17135823	None:intergenic	50.0%
	CAAAACAACACTGCTGCAGG+CGG	-	chr6.4:17136100-17136119	MS.gene42010:CDS	50.0%
	CCCACAAACCTTAACCTTGC+TGG	-	chr6.4:17135326-17135345	MS.gene42010:CDS	50.0%
	GAGTCCAATTCGTACAGCTC+CGG	+	chr6.4:17135968-17135987	None:intergenic	50.0%
	GTACCAAACCTTTGAGCAGC+AGG	+	chr6.4:17136028-17136047	None:intergenic	50.0%
	TCATACGGACAAGGTGTGTC+CGG	-	chr6.4:17135946-17135965	MS.gene42010:CDS	50.0%
	TCCCTGTTGAAGAAGAAGGC+AGG	+	chr6.4:17136300-17136319	None:intergenic	50.0%
!	GGATCAGGTCTTGTAGCCAA+CGG	+	chr6.4:17136063-17136082	None:intergenic	50.0%
!	GTGATTCAAGGGCACAAAGC+TGG	+	chr6.4:17135657-17135676	None:intergenic	50.0%
!	GTGCGGCTTGCTTAGTCATA+CGG	-	chr6.4:17135931-17135950	MS.gene42010:CDS	50.0%
!	GTTTTGCTTTGGCAGCGATC+TGG	+	chr6.4:17136240-17136259	None:intergenic	50.0%
!!	TTGAGCAGCAGGCTTTAGGT+AGG	+	chr6.4:17136017-17136036	None:intergenic	50.0%
!!	TTTGGCTCGGCATAACTGCA+GGG	+	chr6.4:17136084-17136103	None:intergenic	50.0%
!!!	GCAGCAGTGTTGTTTTGGCT+CGG	+	chr6.4:17136097-17136116	None:intergenic	50.0%
!!!	TTTTGGCTCGGCATAACTGC+AGG	+	chr6.4:17136085-17136104	None:intergenic	50.0%
	CGCCTATATGCGCATCAGAG+TGG	-	chr6.4:17135799-17135818	MS.gene42010:intron	55.0%
	GGATCGAATCAAACCTGGCG+TGG	-	chr6.4:17135628-17135647	MS.gene42010:CDS	55.0%
	GTACTGCTGCAACCAACCGT+TGG	-	chr6.4:17136044-17136063	MS.gene42010:CDS	55.0%
	GTGCCTGGAAGCCAGTCAAA+CGG	-	chr6.4:17135489-17135508	MS.gene42010:CDS	55.0%
	GTGTCCGGAGCTGTACGAAT+TGG	-	chr6.4:17135961-17135980	MS.gene42010:CDS	55.0%
	TCGGCATAACTGCAGGGATC+AGG	+	chr6.4:17136078-17136097	None:intergenic	55.0%
	TGCCTGGAAGCCAGTCAAAC+GGG	-	chr6.4:17135490-17135509	MS.gene42010:CDS	55.0%
!	CAGGTCTTGTAGCCAACGGT+TGG	+	chr6.4:17136059-17136078	None:intergenic	55.0%
!!	AACCCGTTTGACTGGCTTCC+AGG	+	chr6.4:17135495-17135514	None:intergenic	55.0%
!!!	CGCCTGCAGCAGTGTTGTTT+TGG	+	chr6.4:17136102-17136121	None:intergenic	55.0%
	ACAAAGCTGGGAACCACGCC+AGG	+	chr6.4:17135644-17135663	None:intergenic	60.0%
	GCGTTCTCGACGAAGGTCTG+TGG	-	chr6.4:17135579-17135598	MS.gene42010:CDS	60.0%
	CGCGAGACGCATCCACCTTG+TGG	+	chr6.4:17135562-17135581	None:intergenic	65.0%
	GCGTCTCGCGTTCTCGACGA+AGG	-	chr6.4:17135572-17135591	MS.gene42010:CDS	65.0%
	GTGAGTGCATGTCGCGTGCC+TGG	-	chr6.4:17135474-17135493	MS.gene42010:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	17135320	17136324	17135320	ID=MS.gene42010
chr6.4	mRNA	17135320	17136324	17135320	ID=MS.gene42010.t1;Parent=MS.gene42010
chr6.4	exon	17135809	17136324	17135809	ID=MS.gene42010.t1.exon1;Parent=MS.gene42010.t1
chr6.4	CDS	17135809	17136324	17135809	ID=cds.MS.gene42010.t1;Parent=MS.gene42010.t1
chr6.4	exon	17135320	17135685	17135320	ID=MS.gene42010.t1.exon2;Parent=MS.gene42010.t1
chr6.4	CDS	17135320	17135685	17135320	ID=cds.MS.gene42010.t1;Parent=MS.gene42010.t1

Gene Sequence

>MS.gene42010

ATGGATCCCACAAACCTTAACCTTGCTGGTCTGACTTTGTTTGAAGAGGGTCTAACCCTAAACCTTGAAACCGAGTCTAAAACTACTGCTATCCTTGAACACTGTTTGATCGATCGTGTCCTTGCTAATCGTGAAATCCAGTTTGCCTATTTCAGTGAGTGCATGTCGCGTGCCTGGAAGCCAGTCAAACGGGTTACAATCACAAAGTCTGTCGGTGATCGTTTCTTGTTTCAGTTTCACCACAAGGTGGATGCGTCTCGCGTTCTCGACGAAGGTCTGTGGTTGTATGATAATTTTCATATTGCTATGGATCGAATCAAACCTGGCGTGGTTCCCAGCTTTGTGCCCTTGAATCACATCGATTTTTGGGTGCAAGTCCATGGTCTTCCATTTGGTTTCATCCAACCCAAAGTAGGTCAAGGTATAGGAAGTTTTCTAGGTACTCTTAAGGCATACGATGGTCGTAACACAATCCATATCGCCTATATGCGCATCAGAGTGGCTATTGTTGTCACGGTTCCTCTGAAAAAAGAATGACGTGTACGTGCTAGTAACGGTTCTTTTGTGACAGTTAATTTTAAATATGAGAAATTGGGTGTTTTTTGTCACAGGTGCGGCTTGCTTAGTCATACGGACAAGGTGTGTCCGGAGCTGTACGAATTGGACTCTGATGATGGTGTTAGAAACTGGGGTGCCTACCTAAAGCCTGCTGCTCAAAGGTTTGGTACTGCTGCAACCAACCGTTGGCTACAAGACCTGATCCCTGCAGTTATGCCGAGCCAAAACAACACTGCTGCAGGCGGCTTTGCTACTCAAAATGTTACTGCTGTTGATGCTGAAACTGTACCGAATTTTAATGACATAATGCTTGCTGTCCAGAGCCAGATAACTGCAATCAAACATGATGTGCTTGCTGCCCAGATCGCTGCCAAAGCAAAACAAGGTACTGGTGCTAGTTTGTCTTGCCAAATGAACTTCCTGCCTTCTTCTTCAACAGGGAACTAG

Protein sequence

>MS.gene42010.t1

MDPTNLNLAGLTLFEEGLTLNLETESKTTAILEHCLIDRVLANREIQFAYFSECMSRAWKPVKRVTITKSVGDRFLFQFHHKVDASRVLDEGLWLYDNFHIAMDRIKPGVVPSFVPLNHIDFWVQVHGLPFGFIQPKVGQGIGSFLGTLKAYDGRNTIHIAYMRIRVAIVVTVCPELYELDSDDGVRNWGAYLKPAAQRFGTAATNRWLQDLIPAVMPSQNNTAAGGFATQNVTAVDAETVPNFNDIMLAVQSQITAIKHDVLAAQIAAKAKQGTGASLSCQMNFLPSSSTGN