AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43393

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43393.t1 MTR_0010s0370 54.545 132 59 1 4 134 56 187 1.16e-44 153
MS.gene43393.t1 MTR_0010s0350 54.545 132 59 1 4 134 56 187 1.16e-44 153
MS.gene43393.t1 MTR_7g089990 44.538 119 63 3 50 165 84 202 1.94e-21 92.0
MS.gene43393.t1 MTR_6g033215 30.496 141 97 1 7 146 154 294 7.15e-20 89.4
MS.gene43393.t1 MTR_4g103530 40.909 88 52 0 6 93 6 93 5.32e-17 79.0
MS.gene43393.t1 MTR_3g053920 26.512 215 88 5 1 215 55 199 1.59e-16 79.7
MS.gene43393.t1 MTR_1g036710 38.636 132 45 3 80 210 1 97 2.27e-16 79.3
MS.gene43393.t1 MTR_1g036720 47.273 55 29 0 4 58 56 110 2.42e-12 63.5
MS.gene43393.t1 MTR_7g106180 29.565 115 74 2 13 124 57 167 3.48e-12 66.2
MS.gene43393.t1 MTR_2g061500 38.356 73 45 0 1 73 55 127 2.75e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 93 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCAATCACATACCCTTC+TGG 0.193758 7.2:-14391598 MS.gene43393:CDS
TTGGCTTCACGGCGGAAATT+TGG 0.238988 7.2:+14389868 None:intergenic
GTGATTGAGAGGAACATATT+TGG 0.258628 7.2:+14391610 None:intergenic
GACGGGCATCTTCTGGTTCT+AGG 0.292833 7.2:-14391656 MS.gene43393:CDS
CATATAAGAAGCAAGAAAAT+TGG 0.300710 7.2:+14391472 None:intergenic
AGAAATGGTAGTGGAAGTTT+TGG 0.306495 7.2:-14391224 MS.gene43393:CDS
TAATTTCGTTGGAGAATATA+TGG 0.306578 7.2:-14391516 MS.gene43393:CDS
TTCGTAATTTGTTGGCTTCA+CGG 0.313454 7.2:+14389857 None:intergenic
TGTTTGTCAGATGTCTATTA+AGG 0.315865 7.2:-14391762 MS.gene43393:CDS
ATCCGGAGTTAAAATAGATT+TGG 0.320429 7.2:+14390980 None:intergenic
TTCAGATTTGTATCTACCTT+TGG 0.331305 7.2:+14390876 None:intergenic
AAAGTATTGTGTTGATGATA+TGG 0.364117 7.2:-14389914 MS.gene43393:intron
CTTGGGGACGCATATCTCTA+TGG 0.374934 7.2:-14391048 MS.gene43393:CDS
CATTACTGCAGGTAAACAAT+TGG 0.385387 7.2:-14391540 MS.gene43393:CDS
TGTTATTTCTGTGGTTTGCT+TGG 0.387501 7.2:-14391338 MS.gene43393:CDS
TGATTGAGAGGAACATATTT+GGG 0.396563 7.2:+14391611 None:intergenic
CAAACAGGTCTCATGAATTC+CGG 0.402371 7.2:+14391779 None:intergenic
TCCGGTAGCAATTAATAACT+TGG 0.407198 7.2:-14391066 MS.gene43393:CDS
CTGATGATGGCACACGCCTT+TGG 0.408898 7.2:-14391274 MS.gene43393:CDS
ACAGTCTGACATGACCAATA+TGG 0.414410 7.2:-14390850 MS.gene43393:CDS
AAGCTCGTTTCGTAATTTGT+TGG 0.418506 7.2:+14389849 None:intergenic
TAAACAACATTCAGATGTTC+CGG 0.418804 7.2:-14391084 MS.gene43393:CDS
TCTCAATCACATACCCTTCT+GGG 0.419105 7.2:-14391597 MS.gene43393:CDS
CAATTGTTTACCTGCAGTAA+TGG 0.424201 7.2:+14391541 None:intergenic
GAGAGGATGGTGGTCCGGTT+AGG 0.424336 7.2:-14391187 MS.gene43393:CDS
TCCACTACCATTTCTCTTCA+CGG 0.427375 7.2:+14391232 None:intergenic
TTAATAGACATCTGACAAAC+AGG 0.430137 7.2:+14391764 None:intergenic
CCACTACCATTTCTCTTCAC+GGG 0.431490 7.2:+14391233 None:intergenic
AATTCAGTCTTGTTTACATC+CGG 0.433001 7.2:+14390963 None:intergenic
AAACAATTGGGTAATTTCGT+TGG 0.439460 7.2:-14391527 MS.gene43393:CDS
TGTAAACAAGACTGAATTGA+TGG 0.444069 7.2:-14390958 MS.gene43393:CDS
AAAGATTACAAAAGTAGTCT+TGG 0.444569 7.2:+14389569 None:intergenic
TAGATTTGGTTGGCAAGGGA+TGG 0.463335 7.2:+14390994 None:intergenic
AAGATTACAAAAGTAGTCTT+GGG 0.463918 7.2:+14389570 None:intergenic
ACGCTGCACATCTTCCATAT+TGG 0.471492 7.2:+14390836 None:intergenic
TTGATGGAAGAAGAATTAAA+TGG 0.472715 7.2:-14390942 MS.gene43393:CDS
TAAAATAGATTTGGTTGGCA+AGG 0.480153 7.2:+14390989 None:intergenic
CAAACCACAGAAATAACAAA+AGG 0.482509 7.2:+14391343 None:intergenic
AGAACCACAACTGTTATTGA+TGG 0.482836 7.2:-14391113 MS.gene43393:CDS
CCGGTAGCAATTAATAACTT+GGG 0.491044 7.2:-14391065 MS.gene43393:CDS
ATTACTGCAGGTAAACAATT+GGG 0.492640 7.2:-14391539 MS.gene43393:CDS
AAAATAGATTTGGTTGGCAA+GGG 0.494617 7.2:+14390990 None:intergenic
CCCAAGTTATTAATTGCTAC+CGG 0.508620 7.2:+14391065 None:intergenic
GATGGTGCAGCAGACCTAAC+CGG 0.510441 7.2:+14391173 None:intergenic
TATGCGTATCCGTGTTATGC+TGG 0.511346 7.2:-14391453 MS.gene43393:CDS
CTTAAGGAGAAATACATTGA+GGG 0.517622 7.2:+14389503 None:intergenic
ATTCTTTCACCCTCGTGACA+TGG 0.518090 7.2:-14391711 MS.gene43393:CDS
ACATGTCCTTCTTTATGTGA+TGG 0.518989 7.2:+14391155 None:intergenic
CACTACCATTTCTCTTCACG+GGG 0.523078 7.2:+14391234 None:intergenic
TATGCTAATGCTACTGATGA+TGG 0.526550 7.2:-14391287 MS.gene43393:CDS
GGAGTTAAAATAGATTTGGT+TGG 0.529948 7.2:+14390984 None:intergenic
GTTTCAAATATGAGAGACTC+GGG 0.540034 7.2:-14391367 MS.gene43393:CDS
GCTACGAGAGGATGGTGGTC+CGG 0.542500 7.2:-14391192 MS.gene43393:CDS
AAGGGATGGAATAAAGTAGC+AGG 0.551431 7.2:+14391008 None:intergenic
GCTGGATGTTCGAAAACCAC+TGG 0.553986 7.2:-14391435 MS.gene43393:CDS
TGTTTCAAATATGAGAGACT+CGG 0.562317 7.2:-14391368 MS.gene43393:CDS
TCTTAAGGAGAAATACATTG+AGG 0.563765 7.2:+14389502 None:intergenic
GGTTGTATGTCCATTACTGC+AGG 0.572619 7.2:-14391551 MS.gene43393:CDS
GACGCATATCTCTATGGCTG+AGG 0.573205 7.2:-14391042 MS.gene43393:CDS
ATCATGGACTTGCACCCAGA+AGG 0.573647 7.2:+14391583 None:intergenic
TACAACCGATCGGAACATCA+TGG 0.574544 7.2:+14391567 None:intergenic
TCATGGACTTGCACCCAGAA+GGG 0.578778 7.2:+14391584 None:intergenic
TTGTCAGATGTCTATTAAGG+AGG 0.578781 7.2:-14391759 MS.gene43393:CDS
TCAAAGTGGCTACGAGAGGA+TGG 0.584521 7.2:-14391200 MS.gene43393:CDS
AATCTTTACACACCTAGTGA+TGG 0.587647 7.2:-14389553 MS.gene43393:CDS
CGGTAGCAATTAATAACTTG+GGG 0.591656 7.2:-14391064 MS.gene43393:CDS
ATGGAGCGAGTACTCAAGAA+AGG 0.593577 7.2:-14391692 MS.gene43393:CDS
TGATTCTGAAACTGCACCAA+AGG 0.596380 7.2:-14390892 MS.gene43393:CDS
GTGGTTCTCTGAGATAAGCC+AGG 0.596553 7.2:+14391128 None:intergenic
ATGTTTGTAGAAGATCAAGC+TGG 0.596602 7.2:-14389607 MS.gene43393:intron
GTGATCATTACTACTTCGAA+TGG 0.596771 7.2:+14389822 None:intergenic
CCCGTGAAGAGAAATGGTAG+TGG 0.597914 7.2:-14391233 MS.gene43393:CDS
CAGAAGGGTATGTGATTGAG+AGG 0.599442 7.2:+14391599 None:intergenic
CACGTAGCTCAGAACTCCAA+AGG 0.602975 7.2:+14391258 None:intergenic
GCTGCACCATCACATAAAGA+AGG 0.604227 7.2:-14391161 MS.gene43393:CDS
AGTGAATAATCTCCATCACT+AGG 0.604608 7.2:+14389541 None:intergenic
ACCTCCATCAATAACAGTTG+TGG 0.608006 7.2:+14391109 None:intergenic
CAAGTCCATGATGTTCCGAT+CGG 0.609422 7.2:-14391572 MS.gene43393:CDS
AGTACTCGCTCCATGTCACG+AGG 0.611590 7.2:+14391701 None:intergenic
TGGATCAAAGTGGCTACGAG+AGG 0.623203 7.2:-14391204 MS.gene43393:CDS
TTCGAACATCCAGCATAACA+CGG 0.626483 7.2:+14391444 None:intergenic
AAAGAAGGACATGTAATACC+TGG 0.626658 7.2:-14391146 MS.gene43393:CDS
ACCACAACTGTTATTGATGG+AGG 0.628220 7.2:-14391110 MS.gene43393:CDS
GTGTTGATGATATGGAAGCA+TGG 0.641732 7.2:-14389906 MS.gene43393:CDS
GAGGGTGAAAGAATTGAAAG+AGG 0.647239 7.2:+14391720 None:intergenic
TATGGAAGATGTGCAGCGTG+AGG 0.660462 7.2:-14390832 MS.gene43393:intron
GTAATGGACATACAACCGAT+CGG 0.680385 7.2:+14391557 None:intergenic
GAGTACTCAAGAAAGGTCTG+TGG 0.697972 7.2:-14391685 MS.gene43393:CDS
AAGTGGCTACGAGAGGATGG+TGG 0.698900 7.2:-14391197 MS.gene43393:CDS
TGCTGCAGAATTCATCTGTG+TGG 0.719271 7.2:+14391315 None:intergenic
GTAATTTGTTGGCTTCACGG+CGG 0.724139 7.2:+14389860 None:intergenic
ACTACCATTTCTCTTCACGG+GGG 0.754436 7.2:+14391235 None:intergenic
GTACTCGCTCCATGTCACGA+GGG 0.761679 7.2:+14391702 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAAAATATTATTAGT+TGG + chr7.2:14391349-14391368 None:intergenic 10.0%
!! GAAATAATATTAAAAAGTTG+CGG - chr7.2:14391644-14391663 MS.gene43393:CDS 15.0%
!! AGATTAATTAATCTTGCATT+CGG + chr7.2:14391178-14391197 None:intergenic 20.0%
!! TTCAATAAGGAAAAAATATC+CGG + chr7.2:14390637-14390656 None:intergenic 20.0%
!!! GAATCAACAACATTTTTTAT+CGG - chr7.2:14390496-14390515 MS.gene43393:intron 20.0%
! AAAAAGATTAAGACTAAGAC+TGG - chr7.2:14389882-14389901 MS.gene43393:CDS 25.0%
! AAAGATTACAAAAGTAGTCT+TGG + chr7.2:14391720-14391739 None:intergenic 25.0%
! AACTTGCAGATTAATGAAAT+TGG + chr7.2:14390805-14390824 None:intergenic 25.0%
! AAGATTACAAAAGTAGTCTT+GGG + chr7.2:14391719-14391738 None:intergenic 25.0%
! CATATAAGAAGCAAGAAAAT+TGG + chr7.2:14389817-14389836 None:intergenic 25.0%
! GATTAATTAATCTTGCATTC+GGG + chr7.2:14391177-14391196 None:intergenic 25.0%
! TAATTTCGTTGGAGAATATA+TGG - chr7.2:14389770-14389789 MS.gene43393:intron 25.0%
! TTGATGGAAGAAGAATTAAA+TGG - chr7.2:14390344-14390363 MS.gene43393:intron 25.0%
!!! AAAGTATTGTGTTGATGATA+TGG - chr7.2:14391372-14391391 MS.gene43393:CDS 25.0%
!!! AACCAAATCTATTTTAACTC+CGG - chr7.2:14390304-14390323 MS.gene43393:intron 25.0%
AAACAATTGGGTAATTTCGT+TGG - chr7.2:14389759-14389778 MS.gene43393:intron 30.0%
AAACCATTATAAAGCCAAGT+CGG + chr7.2:14391011-14391030 None:intergenic 30.0%
AAATATCCGGTTTATAGACA+CGG + chr7.2:14390624-14390643 None:intergenic 30.0%
AAATCACCTATAATACACCA+AGG + chr7.2:14390942-14390961 None:intergenic 30.0%
AATCACCTATAATACACCAA+GGG + chr7.2:14390941-14390960 None:intergenic 30.0%
ACGAAATGAGTATCTTATGT+TGG - chr7.2:14390545-14390564 MS.gene43393:intron 30.0%
AGTGAGACAAAGTTTCAATA+AGG + chr7.2:14390650-14390669 None:intergenic 30.0%
ATCCGGAGTTAAAATAGATT+TGG + chr7.2:14390309-14390328 None:intergenic 30.0%
ATTACTGCAGGTAAACAATT+GGG - chr7.2:14389747-14389766 MS.gene43393:intron 30.0%
CAAACCACAGAAATAACAAA+AGG + chr7.2:14389946-14389965 None:intergenic 30.0%
TAAACAACATTCAGATGTTC+CGG - chr7.2:14390202-14390221 MS.gene43393:intron 30.0%
TCGAATGAATATAACTCTCA+GGG + chr7.2:14391246-14391265 None:intergenic 30.0%
TGATTGAGAGGAACATATTT+GGG + chr7.2:14389678-14389697 None:intergenic 30.0%
TGTAAACAAGACTGAATTGA+TGG - chr7.2:14390328-14390347 MS.gene43393:intron 30.0%
TGTTTCAAATATGAGAGACT+CGG - chr7.2:14389918-14389937 MS.gene43393:intron 30.0%
TGTTTGTCAGATGTCTATTA+AGG - chr7.2:14389524-14389543 MS.gene43393:CDS 30.0%
TTAATAGACATCTGACAAAC+AGG + chr7.2:14389525-14389544 None:intergenic 30.0%
TTCAGATTTGTATCTACCTT+TGG + chr7.2:14390413-14390432 None:intergenic 30.0%
TTCGAATGAATATAACTCTC+AGG + chr7.2:14391247-14391266 None:intergenic 30.0%
! AAAATAGATTTGGTTGGCAA+GGG + chr7.2:14390299-14390318 None:intergenic 30.0%
! ATCTTTGAGCCAAAAGATTT+TGG + chr7.2:14391572-14391591 None:intergenic 30.0%
! ATCTTTTTAAATCGAACCAG+TGG + chr7.2:14389870-14389889 None:intergenic 30.0%
! GGAGTTAAAATAGATTTGGT+TGG + chr7.2:14390305-14390324 None:intergenic 30.0%
! GTAGCCATGAATTTTCAAAA+CGG + chr7.2:14391279-14391298 None:intergenic 30.0%
! TAAAATAGATTTGGTTGGCA+AGG + chr7.2:14390300-14390319 None:intergenic 30.0%
! TACTTTACTGTTGATAGAGA+AGG - chr7.2:14390714-14390733 MS.gene43393:intron 30.0%
!! AAACACAAGAAAGCTTGTTT+TGG + chr7.2:14391516-14391535 None:intergenic 30.0%
!! AATTCAGTCTTGTTTACATC+CGG + chr7.2:14390326-14390345 None:intergenic 30.0%
!! AGAGATGTTTGTTATTTGCT+TGG - chr7.2:14390681-14390700 MS.gene43393:intron 30.0%
!!! AAAATCTTTTGGCTCAAAGA+TGG - chr7.2:14391571-14391590 MS.gene43393:CDS 30.0%
!!! AAATCTTTTGGCTCAAAGAT+GGG - chr7.2:14391572-14391591 MS.gene43393:CDS 30.0%
AAAGAAGGACATGTAATACC+TGG - chr7.2:14390140-14390159 MS.gene43393:intron 35.0%
AATCTTTACACACCTAGTGA+TGG - chr7.2:14391733-14391752 MS.gene43393:CDS 35.0%
ACATGTCCTTCTTTATGTGA+TGG + chr7.2:14390134-14390153 None:intergenic 35.0%
AGAACCACAACTGTTATTGA+TGG - chr7.2:14390173-14390192 MS.gene43393:intron 35.0%
AGGTAAATGGATATCCTTCT+AGG + chr7.2:14391073-14391092 None:intergenic 35.0%
AGTGAATAATCTCCATCACT+AGG + chr7.2:14391748-14391767 None:intergenic 35.0%
ATGTTTGTAGAAGATCAAGC+TGG - chr7.2:14391679-14391698 MS.gene43393:CDS 35.0%
CAATTGTTTACCTGCAGTAA+TGG + chr7.2:14389748-14389767 None:intergenic 35.0%
CATAAGATACTCATTTCGTC+CGG + chr7.2:14390544-14390563 None:intergenic 35.0%
CATTACTGCAGGTAAACAAT+TGG - chr7.2:14389746-14389765 MS.gene43393:intron 35.0%
CCCAAGTTATTAATTGCTAC+CGG + chr7.2:14390224-14390243 None:intergenic 35.0%
CCGGTAGCAATTAATAACTT+GGG - chr7.2:14390221-14390240 MS.gene43393:intron 35.0%
CGGTAGCAATTAATAACTTG+GGG - chr7.2:14390222-14390241 MS.gene43393:intron 35.0%
GGTAAATGGATATCCTTCTA+GGG + chr7.2:14391072-14391091 None:intergenic 35.0%
GTAAATGGATATCCTTCTAG+GGG + chr7.2:14391071-14391090 None:intergenic 35.0%
GTGATCATTACTACTTCGAA+TGG + chr7.2:14391467-14391486 None:intergenic 35.0%
GTGATTGAGAGGAACATATT+TGG + chr7.2:14389679-14389698 None:intergenic 35.0%
GTTTCAAATATGAGAGACTC+GGG - chr7.2:14389919-14389938 MS.gene43393:intron 35.0%
TAAATGGATATCCTTCTAGG+GGG + chr7.2:14391070-14391089 None:intergenic 35.0%
TAGAAGGATATCCATTTACC+TGG - chr7.2:14391072-14391091 MS.gene43393:CDS 35.0%
TATGCTAATGCTACTGATGA+TGG - chr7.2:14389999-14390018 MS.gene43393:intron 35.0%
TCCGGTAGCAATTAATAACT+TGG - chr7.2:14390220-14390239 MS.gene43393:intron 35.0%
TCTCATCAACCATATCTGAA+AGG + chr7.2:14391312-14391331 None:intergenic 35.0%
TGATCAAAGCCTTTCAGATA+TGG - chr7.2:14391300-14391319 MS.gene43393:CDS 35.0%
TGTTGCAGGAGGATATTTAT+TGG - chr7.2:14391536-14391555 MS.gene43393:CDS 35.0%
TTACAAGTGATGACAAACGA+GGG - chr7.2:14390973-14390992 MS.gene43393:CDS 35.0%
TTGTCAGATGTCTATTAAGG+AGG - chr7.2:14389527-14389546 MS.gene43393:CDS 35.0%
TTTACCTGGTTCAAAAGTCT+TGG - chr7.2:14391086-14391105 MS.gene43393:CDS 35.0%
! AAGCTCGTTTCGTAATTTGT+TGG + chr7.2:14391440-14391459 None:intergenic 35.0%
! AGACTTTTGAACCAGGTAAA+TGG + chr7.2:14391086-14391105 None:intergenic 35.0%
! AGCAACGATCCAAAATCTTT+TGG - chr7.2:14391560-14391579 MS.gene43393:CDS 35.0%
! ATGGCGACTAACTTCATTTT+GGG - chr7.2:14390845-14390864 MS.gene43393:CDS 35.0%
! TATGGCGACTAACTTCATTT+TGG - chr7.2:14390844-14390863 MS.gene43393:CDS 35.0%
!! CAGATATGGTTGATGAGAAT+TGG - chr7.2:14391314-14391333 MS.gene43393:CDS 35.0%
!! TGTTATTTCTGTGGTTTGCT+TGG - chr7.2:14389948-14389967 MS.gene43393:intron 35.0%
!! TTCGTAATTTGTTGGCTTCA+CGG + chr7.2:14391432-14391451 None:intergenic 35.0%
!!! AATCTTTTGGCTCAAAGATG+GGG - chr7.2:14391573-14391592 MS.gene43393:CDS 35.0%
!!! AGAAATGGTAGTGGAAGTTT+TGG - chr7.2:14390062-14390081 MS.gene43393:intron 35.0%
!!! GCTTCCGTTTTGAAAATTCA+TGG - chr7.2:14391272-14391291 MS.gene43393:CDS 35.0%
AAGGGATGGAATAAAGTAGC+AGG + chr7.2:14390281-14390300 None:intergenic 40.0%
ACAGTCTGACATGACCAATA+TGG - chr7.2:14390436-14390455 MS.gene43393:intron 40.0%
ACCACAACTGTTATTGATGG+AGG - chr7.2:14390176-14390195 MS.gene43393:intron 40.0%
ACCTCCATCAATAACAGTTG+TGG + chr7.2:14390180-14390199 None:intergenic 40.0%
CAAACAGGTCTCATGAATTC+CGG + chr7.2:14389510-14389529 None:intergenic 40.0%
CAAGTTAATGACTCAGACAG+AGG - chr7.2:14390819-14390838 MS.gene43393:intron 40.0%
CCTTATCCGTGTCTATAAAC+CGG - chr7.2:14390615-14390634 MS.gene43393:intron 40.0%
CTTACAAGTGATGACAAACG+AGG - chr7.2:14390972-14390991 MS.gene43393:CDS 40.0%
GAAGACTTCCAAATAACAGC+TGG + chr7.2:14390753-14390772 None:intergenic 40.0%
GAGGGTGAAAGAATTGAAAG+AGG + chr7.2:14389569-14389588 None:intergenic 40.0%
GATAGGTGAATGATCTGAAG+TGG + chr7.2:14391209-14391228 None:intergenic 40.0%
TACAAGTGATGACAAACGAG+GGG - chr7.2:14390974-14390993 MS.gene43393:CDS 40.0%
TCCACTACCATTTCTCTTCA+CGG + chr7.2:14390057-14390076 None:intergenic 40.0%
TCTCAATCACATACCCTTCT+GGG - chr7.2:14389689-14389708 MS.gene43393:intron 40.0%
TTCACCTATCCTTCTTAAGC+TGG - chr7.2:14391219-14391238 MS.gene43393:CDS 40.0%
TTCGAACATCCAGCATAACA+CGG + chr7.2:14389845-14389864 None:intergenic 40.0%
TTTAGACTAGGAACTGCCTT+AGG + chr7.2:14390592-14390611 None:intergenic 40.0%
! AAAGGTCTGTGGTCTTTTGA+CGG - chr7.2:14389612-14389631 MS.gene43393:intron 40.0%
! AGTTCCAAGACTTTTGAACC+AGG + chr7.2:14391093-14391112 None:intergenic 40.0%
! ATGACTCAGACAGAGGTATA+TGG - chr7.2:14390826-14390845 MS.gene43393:intron 40.0%
! CGGATAAGGTCTTTTAGACT+AGG + chr7.2:14390604-14390623 None:intergenic 40.0%
! TGGCGACTAACTTCATTTTG+GGG - chr7.2:14390846-14390865 MS.gene43393:CDS 40.0%
!! AGACCGACTTGGCTTTATAA+TGG - chr7.2:14391005-14391024 MS.gene43393:CDS 40.0%
!! GCTTTCTTGTGTTTTGTTGC+AGG - chr7.2:14391522-14391541 MS.gene43393:CDS 40.0%
!! GTAATGGACATACAACCGAT+CGG + chr7.2:14389732-14389751 None:intergenic 40.0%
!! GTGTTGATGATATGGAAGCA+TGG - chr7.2:14391380-14391399 MS.gene43393:CDS 40.0%
!! GTGTTGTAAAAAAGCGCTCA+AGG - chr7.2:14390366-14390385 MS.gene43393:intron 40.0%
!! TGATTCTGAAACTGCACCAA+AGG - chr7.2:14390394-14390413 MS.gene43393:intron 40.0%
!! TTCTTGTGTTTTGTTGCAGG+AGG - chr7.2:14391525-14391544 MS.gene43393:CDS 40.0%
!!! CATTTTTTATCGGCAGAGTC+TGG - chr7.2:14390506-14390525 MS.gene43393:intron 40.0%
!!! GGGTCCTTTTGTTATTTCTG+TGG - chr7.2:14389939-14389958 MS.gene43393:intron 40.0%
!!! GTGGAAGTTTTGGATCAAAG+TGG - chr7.2:14390072-14390091 MS.gene43393:intron 40.0%
AAGCGTTCTACACATCCTCA+TGG - chr7.2:14391140-14391159 MS.gene43393:CDS 45.0%
ACAAGTGATGACAAACGAGG+GGG - chr7.2:14390975-14390994 MS.gene43393:CDS 45.0%
ACATAGCAACAAGGTCACGA+AGG + chr7.2:14390911-14390930 None:intergenic 45.0%
ACGCTGCACATCTTCCATAT+TGG + chr7.2:14390453-14390472 None:intergenic 45.0%
ACTACCATTTCTCTTCACGG+GGG + chr7.2:14390054-14390073 None:intergenic 45.0%
ATCTTATGTTGGAACTGCCG+AGG - chr7.2:14390556-14390575 MS.gene43393:intron 45.0%
ATGCACAACGTCGACAATCT+TGG - chr7.2:14390880-14390899 MS.gene43393:CDS 45.0%
ATGGAGCGAGTACTCAAGAA+AGG - chr7.2:14389594-14389613 MS.gene43393:CDS 45.0%
ATTCTTTCACCCTCGTGACA+TGG - chr7.2:14389575-14389594 MS.gene43393:CDS 45.0%
CAAGTCCATGATGTTCCGAT+CGG - chr7.2:14389714-14389733 MS.gene43393:intron 45.0%
CACTACCATTTCTCTTCACG+GGG + chr7.2:14390055-14390074 None:intergenic 45.0%
CCACTACCATTTCTCTTCAC+GGG + chr7.2:14390056-14390075 None:intergenic 45.0%
CCGGTTTATAGACACGGATA+AGG + chr7.2:14390618-14390637 None:intergenic 45.0%
CTCTCAATCACATACCCTTC+TGG - chr7.2:14389688-14389707 MS.gene43393:intron 45.0%
GAGTACTCAAGAAAGGTCTG+TGG - chr7.2:14389601-14389620 MS.gene43393:intron 45.0%
GCTGCACCATCACATAAAGA+AGG - chr7.2:14390125-14390144 MS.gene43393:intron 45.0%
GGTTGTATGTCCATTACTGC+AGG - chr7.2:14389735-14389754 MS.gene43393:intron 45.0%
TACAACCGATCGGAACATCA+TGG + chr7.2:14389722-14389741 None:intergenic 45.0%
TATAATACACCAAGGGTCCG+TGG + chr7.2:14390934-14390953 None:intergenic 45.0%
TATGCGTATCCGTGTTATGC+TGG - chr7.2:14389833-14389852 MS.gene43393:intron 45.0%
TGACCTTGTTGCTATGTCCA+CGG - chr7.2:14390914-14390933 MS.gene43393:CDS 45.0%
TGCTGCAGAATTCATCTGTG+TGG + chr7.2:14389974-14389993 None:intergenic 45.0%
! AAGGTCTGTGGTCTTTTGAC+GGG - chr7.2:14389613-14389632 MS.gene43393:intron 45.0%
! ACGGACCCTTGGTGTATTAT+AGG - chr7.2:14390933-14390952 MS.gene43393:CDS 45.0%
! CAGAAGGGTATGTGATTGAG+AGG + chr7.2:14389690-14389709 None:intergenic 45.0%
! GTTGATAGAGAAGGTCGTAG+TGG - chr7.2:14390723-14390742 MS.gene43393:intron 45.0%
! TAGATTTGGTTGGCAAGGGA+TGG + chr7.2:14390295-14390314 None:intergenic 45.0%
!! GTAATTTGTTGGCTTCACGG+CGG + chr7.2:14391429-14391448 None:intergenic 45.0%
!! AATAATTTATAATATTACAT+TGG + chr7.2:14390779-14390798 None:intergenic 5.0%
AGATACTCATTTCGTCCGGC+AGG + chr7.2:14390540-14390559 None:intergenic 50.0%
ATCATGGACTTGCACCCAGA+AGG + chr7.2:14389706-14389725 None:intergenic 50.0%
CAAGTGATGACAAACGAGGG+GGG - chr7.2:14390976-14390995 MS.gene43393:CDS 50.0%
CACGTAGCTCAGAACTCCAA+AGG + chr7.2:14390031-14390050 None:intergenic 50.0%
CCCGTGAAGAGAAATGGTAG+TGG - chr7.2:14390053-14390072 MS.gene43393:intron 50.0%
CGGGAAAAGAGTAAGCCATG+AGG + chr7.2:14391158-14391177 None:intergenic 50.0%
CTTGGGGACGCATATCTCTA+TGG - chr7.2:14390238-14390257 MS.gene43393:intron 50.0%
GACGCATATCTCTATGGCTG+AGG - chr7.2:14390244-14390263 MS.gene43393:intron 50.0%
GATAGAGAAGGTCGTAGTGG+TGG - chr7.2:14390726-14390745 MS.gene43393:intron 50.0%
GCTGGATGTTCGAAAACCAC+TGG - chr7.2:14389851-14389870 MS.gene43393:CDS 50.0%
GGGTCCAGCTTAAGAAGGAT+AGG + chr7.2:14391226-14391245 None:intergenic 50.0%
GTGGTGGTCCAGCTGTTATT+TGG - chr7.2:14390742-14390761 MS.gene43393:intron 50.0%
TATGGAAGATGTGCAGCGTG+AGG - chr7.2:14390454-14390473 MS.gene43393:intron 50.0%
TCAAAGTGGCTACGAGAGGA+TGG - chr7.2:14390086-14390105 MS.gene43393:intron 50.0%
TCATGGACTTGCACCCAGAA+GGG + chr7.2:14389705-14389724 None:intergenic 50.0%
TCTCAGGGTCCAGCTTAAGA+AGG + chr7.2:14391231-14391250 None:intergenic 50.0%
TGGATCAAAGTGGCTACGAG+AGG - chr7.2:14390082-14390101 MS.gene43393:intron 50.0%
TTGGCTTCACGGCGGAAATT+TGG + chr7.2:14391421-14391440 None:intergenic 50.0%
! ATGGATATCCTTCTAGGGGG+AGG + chr7.2:14391067-14391086 None:intergenic 50.0%
!! GTCTTTTGACGGGCATCTTC+TGG - chr7.2:14389623-14389642 MS.gene43393:intron 50.0%
!! GTGGTTCTCTGAGATAAGCC+AGG + chr7.2:14390161-14390180 None:intergenic 50.0%
!!! GTTCTAGGACTTTTGCAGCG+AGG - chr7.2:14389645-14389664 MS.gene43393:intron 50.0%
AAGTCTTGGAACTCCTCGCG+CGG - chr7.2:14391100-14391119 MS.gene43393:CDS 55.0%
AAGTGGCTACGAGAGGATGG+TGG - chr7.2:14390089-14390108 MS.gene43393:intron 55.0%
AGTACTCGCTCCATGTCACG+AGG + chr7.2:14389588-14389607 None:intergenic 55.0%
AGTCTTTCTTCTACCGCGCG+AGG + chr7.2:14391116-14391135 None:intergenic 55.0%
ATCGGCAGAGTCTGGTTACC+AGG - chr7.2:14390514-14390533 MS.gene43393:intron 55.0%
ATGTTGGAACTGCCGAGGTC+TGG - chr7.2:14390561-14390580 MS.gene43393:intron 55.0%
CCTTAGGATGTCCCAGACCT+CGG + chr7.2:14390576-14390595 None:intergenic 55.0%
GATGGTGCAGCAGACCTAAC+CGG + chr7.2:14390116-14390135 None:intergenic 55.0%
GGTCCGTGGACATAGCAACA+AGG + chr7.2:14390920-14390939 None:intergenic 55.0%
GTACTCGCTCCATGTCACGA+GGG + chr7.2:14389587-14389606 None:intergenic 55.0%
TGTTGGAACTGCCGAGGTCT+GGG - chr7.2:14390562-14390581 MS.gene43393:intron 55.0%
TTCATGCATCCGCGAGTGCA+AGG - chr7.2:14391614-14391633 MS.gene43393:CDS 55.0%
TTGCTATGTCCACGGACCCT+TGG - chr7.2:14390922-14390941 MS.gene43393:CDS 55.0%
!! CTGATGATGGCACACGCCTT+TGG - chr7.2:14390012-14390031 MS.gene43393:intron 55.0%
!! GACGGGCATCTTCTGGTTCT+AGG - chr7.2:14389630-14389649 MS.gene43393:intron 55.0%
AGTCTGGTTACCAGGCCTGC+CGG - chr7.2:14390522-14390541 MS.gene43393:intron 60.0%
CGTGCCCCCGTGAAGAGAAA+TGG - chr7.2:14390047-14390066 MS.gene43393:intron 60.0%
TCTCTTGCGCCTTGCACTCG+CGG + chr7.2:14391626-14391645 None:intergenic 60.0%
TTGCACGACCTCCCCCTAGA+AGG - chr7.2:14391056-14391075 MS.gene43393:CDS 60.0%
! CCGAGGTCTGGGACATCCTA+AGG - chr7.2:14390573-14390592 MS.gene43393:intron 60.0%
! GAGAGGATGGTGGTCCGGTT+AGG - chr7.2:14390099-14390118 MS.gene43393:intron 60.0%
! GCTACGAGAGGATGGTGGTC+CGG - chr7.2:14390094-14390113 MS.gene43393:intron 60.0%
CTCATTTCGTCCGGCAGGCC+TGG + chr7.2:14390535-14390554 None:intergenic 65.0%
GGGGGTCTGAGAGACCGACT+TGG - chr7.2:14390994-14391013 MS.gene43393:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 14389504 14391804 14389504 ID=MS.gene43393
chr7.2 mRNA 14389504 14391804 14389504 ID=MS.gene43393.t1;Parent=MS.gene43393
chr7.2 exon 14390833 14391804 14390833 ID=MS.gene43393.t1.exon1;Parent=MS.gene43393.t1
chr7.2 CDS 14390833 14391804 14390833 ID=cds.MS.gene43393.t1;Parent=MS.gene43393.t1
chr7.2 exon 14389836 14389932 14389836 ID=MS.gene43393.t1.exon2;Parent=MS.gene43393.t1
chr7.2 CDS 14389836 14389932 14389836 ID=cds.MS.gene43393.t1;Parent=MS.gene43393.t1
chr7.2 exon 14389504 14389619 14389504 ID=MS.gene43393.t1.exon3;Parent=MS.gene43393.t1
chr7.2 CDS 14389504 14389619 14389504 ID=cds.MS.gene43393.t1;Parent=MS.gene43393.t1
Gene Sequence

>MS.gene43393

ATGCCGGAATTCATGAGACCTGTTTGTCAGATGTCTATTAAGGAGGTTGATGACAACATGTACCTCTTTCAATTCTTTCACCCTCGTGACATGGAGCGAGTACTCAAGAAAGGTCTGTGGTCTTTTGACGGGCATCTTCTGGTTCTAGGACTTTTGCAGCGAGGAAGCACGCCCAAATATGTTCCTCTCAATCACATACCCTTCTGGGTGCAAGTCCATGATGTTCCGATCGGTTGTATGTCCATTACTGCAGGTAAACAATTGGGTAATTTCGTTGGAGAATATATGGAGTATGATGAGAAAAATAATTCCAATTTTCTTGCTTCTTATATGCGTATCCGTGTTATGCTGGATGTTCGAAAACCACTGGTTCGATTTAAAAAGATTAAGACTAAGACTGGATCACATGAAGTTTGTTTCAAATATGAGAGACTCGGGTCCTTTTGTTATTTCTGTGGTTTGCTTGGCCACACAGATGAATTCTGCAGCAATCTTTATGCTAATGCTACTGATGATGGCACACGCCTTTGGAGTTCTGAGCTACGTGCCCCCGTGAAGAGAAATGGTAGTGGAAGTTTTGGATCAAAGTGGCTACGAGAGGATGGTGGTCCGGTTAGGTCTGCTGCACCATCACATAAAGAAGGACATGTAATACCTGGCTTATCTCAGAGAACCACAACTGTTATTGATGGAGGTAGTAAACAACATTCAGATGTTCCGGTAGCAATTAATAACTTGGGGACGCATATCTCTATGGCTGAGGCATTCACAAATCCTGCTACTTTATTCCATCCCTTGCCAACCAAATCTATTTTAACTCCGGATGTAAACAAGACTGAATTGATGGAAGAAGAATTAAATGGTGTTGTAAAAAAGCGCTCAAGGAGTAATGATTCTGAAACTGCACCAAAGGTAGATACAAATCTGAATCAACAGTCTGACATGACCAATATGGAAGATGTGCAGCGTGAGGTTTCACAACAAACTACAATGAATCAACAACATTTTTTATCGGCAGAGTCTGGTTACCAGGCCTGCCGGACGAAATGAGTATCTTATGTTGGAACTGCCGAGGTCTGGGACATCCTAAGGCAGTTCCTAGTCTAAAAGACCTTATCCGTGTCTATAAACCGGATATTTTTTCCTTATTGAAACTTTGTCTCACTCTAATAAAATAAGAGATGTTTGTTATTTGCTTGGTTATGATGCTTACTTTACTGTTGATAGAGAAGGTCGTAGTGGTGGTCCAGCTGTTATTTGGAAGTCTTCTATCCAATGTAATATTATAAATTATTCTTCCAATTTCATTAATCTGCAAGTTAATGACTCAGACAGAGGTATATGGCGACTAACTTCATTTTGGGGCTATTCTAACAATGCACAACGTCGACAATCTTGGAATCTCCTTCGTGACCTTGTTGCTATGTCCACGGACCCTTGGTGTATTATAGGTGATTTTAATGATCTTCTTACAAGTGATGACAAACGAGGGGGGTCTGAGAGACCGACTTGGCTTTATAATGGTTTTCGTTCAGCAGTAAATGATTGTAATTTGCACGACCTCCCCCTAGAAGGATATCCATTTACCTGGTTCAAAAGTCTTGGAACTCCTCGCGCGGTAGAAGAAAGACTTGATAAGCGTTCTACACATCCTCATGGCTTACTCTTTTCCCGAATGCAAGATTAATTAATCTTGTTGCAGCCACTTCAGATCATTCACCTATCCTTCTTAAGCTGGACCCTGAGAGTTATATTCATTCGAAACGTAGCTTCCGTTTTGAAAATTCATGGCTACTTGATCAAAGCCTTTCAGATATGGTTGATGAGAATTGGCACTACTATCCAACTAATAATATTTTACAAAAATTAAAGTATTGTGTTGATGATATGGAAGCATGGAGTAAAGCAAATAGTCCAAATTTCCGCCGTGAAGCCAACAAATTACGAAACGAGCTTGCTGCCATTCGAAGTAGTAATGATCACACAACTGATGCATCTATTACTAACATCCAAAACAAGCTTTCTTGTGTTTTGTTGCAGGAGGATATTTATTGGAAGCAACGATCCAAAATCTTTTGGCTCAAAGATGGGGACAAAAACAGTAAGTTTTTTCATGCATCCGCGAGTGCAAGGCGCAAGAGAAATAATATTAAAAAGTTGCGGAATTCTCATGATATGTTTGTAGAAGATCAAGCTGGTTTGTGTAGCATTGCCCAAGACTACTTTTGTAATCTTTACACACCTAGTGATGGAGATTATTCACTTATTATTGCTACTATCCCTCAATGTATTTCTCCTTAA
Protein sequence

>MS.gene43393.t1

MPEFMRPVCQMSIKEVDDNMYLFQFFHPRDMERVLKKGLWSFDGHLLVLGLLQRGSTPKYVPLNHIPFWVQVHDVPIGCMSITAGKQLGNFVGEYMEYDEKNNSNFLASYMRIRVMLDVRKPLVRFKKIKTKTGSHEVCFKYERLGSFCYFCGLLGHTDEFCSNLYANATDDGTRLWSSELRAPVKRNGSGSFGSKWLREDGGPVRSAAPSHKEGHVIPGLSQRTTTVIDGGSKQHSDVPVAINNLGTHISMAEAFTNPATLFHPLPTKSILTPDVNKTELMEEELNGVVKKRSRSNDSETAPKVDTNLNQQSDMTNMEDVQREYCVDDMEAWSKANSPNFRREANKLRNELAAIRKDQAGLCSIAQDYFCNLYTPSDGDYSLIIATIPQCISP