Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51804.t1 | AES70414.1 | 56.4 | 305 | 104 | 5 | 1 | 301 | 1 | 280 | 1.10E-83 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51804.t1 | G7J017 | 56.4 | 305 | 104 | 5 | 1 | 301 | 1 | 280 | 7.7e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51804.t1 | MTR_3g053920 | 56.393 | 305 | 104 | 5 | 1 | 301 | 1 | 280 | 6.62e-107 | 315 |
| MS.gene51804.t1 | MTR_2g061500 | 71.318 | 129 | 37 | 0 | 1 | 129 | 1 | 129 | 1.82e-62 | 197 |
| MS.gene51804.t1 | MTR_4g103530 | 48.165 | 218 | 73 | 4 | 55 | 269 | 1 | 181 | 2.51e-57 | 186 |
| MS.gene51804.t1 | MTR_7g011710 | 68.539 | 89 | 28 | 0 | 55 | 143 | 1 | 89 | 2.15e-38 | 135 |
| MS.gene51804.t1 | MTR_6g033215 | 34.375 | 128 | 84 | 0 | 29 | 156 | 122 | 249 | 4.32e-23 | 98.2 |
| MS.gene51804.t1 | MTR_0010s0370 | 34.161 | 161 | 100 | 5 | 11 | 168 | 7 | 164 | 5.20e-22 | 92.8 |
| MS.gene51804.t1 | MTR_0010s0350 | 34.161 | 161 | 100 | 5 | 11 | 168 | 7 | 164 | 5.20e-22 | 92.8 |
| MS.gene51804.t1 | MTR_8g463110 | 58.197 | 122 | 39 | 4 | 248 | 364 | 1 | 115 | 1.20e-21 | 97.1 |
| MS.gene51804.t1 | MTR_1g036720 | 34.615 | 104 | 66 | 1 | 11 | 112 | 7 | 110 | 4.41e-16 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 104 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAGCTTGAAAATTATTT+TGG | 0.174825 | 3.4:-16012275 | None:intergenic |
| CACTCTCCCTTTGAATTATA+TGG | 0.189099 | 3.4:+16011834 | MS.gene51804:CDS |
| CGGTTTCAGCGGTTAGGTTA+AGG | 0.288654 | 3.4:-16011552 | None:intergenic |
| CTTTGCTGCTGTTGGGGTTG+TGG | 0.303240 | 3.4:+16012659 | MS.gene51804:CDS |
| CAGGTTCATGGTCTGCCTTT+TGG | 0.321795 | 3.4:+16011868 | MS.gene51804:CDS |
| CAGATGATGGTGTGCGCAAC+TGG | 0.323275 | 3.4:+16012163 | MS.gene51804:CDS |
| AGTCCTCCTTTGCTGCTGTT+GGG | 0.325413 | 3.4:+16012652 | MS.gene51804:CDS |
| GGACATGCGTTCACTGAAAT+AGG | 0.332477 | 3.4:-16011641 | None:intergenic |
| TTTGCTGCTGTTGGGGTTGT+GGG | 0.332689 | 3.4:+16012660 | MS.gene51804:CDS |
| AGGAACAAATGTTAGTGTTC+GGG | 0.337183 | 3.4:+16012695 | MS.gene51804:CDS |
| AAGCCTGTCACGACACGTAT+AGG | 0.353037 | 3.4:+16012198 | MS.gene51804:CDS |
| GAGTCCTCCTTTGCTGCTGT+TGG | 0.372371 | 3.4:+16012651 | MS.gene51804:CDS |
| ATCAAGGATAGGAGAGGTTT+CGG | 0.372890 | 3.4:-16011572 | None:intergenic |
| GGTTTCAGCGGTTAGGTTAA+GGG | 0.388971 | 3.4:-16011551 | None:intergenic |
| ATGATGCCTTGAGCTACCTT+TGG | 0.400512 | 3.4:-16011901 | None:intergenic |
| AACACCACCTGTGTCGTGTT+TGG | 0.400623 | 3.4:-16012421 | None:intergenic |
| ATCCTTGATCCTTGTTTGAT+CGG | 0.406736 | 3.4:+16011586 | MS.gene51804:CDS |
| GTGTCCTAACTTGTTCGAAT+TGG | 0.409748 | 3.4:+16012137 | MS.gene51804:CDS |
| TAGGAACAAATGTTAGTGTT+CGG | 0.415446 | 3.4:+16012694 | MS.gene51804:CDS |
| GAGTCCAATTCGAACAAGTT+AGG | 0.418936 | 3.4:-16012141 | None:intergenic |
| TTTCAAGCTGGTTCTTCTGC+TGG | 0.420860 | 3.4:+16012285 | MS.gene51804:CDS |
| TGTTATGGCCATCGTAGGTT+TGG | 0.421757 | 3.4:-16011942 | None:intergenic |
| GTTTGGCATAACATCAGGTA+TGG | 0.424960 | 3.4:-16012253 | None:intergenic |
| AGCCTGTCACGACACGTATA+GGG | 0.429313 | 3.4:+16012199 | MS.gene51804:CDS |
| GACATATGTGTACAGGTTCA+TGG | 0.436675 | 3.4:+16011856 | MS.gene51804:CDS |
| CAGGGTCATTCTATTGTGCT+TGG | 0.442529 | 3.4:+16012504 | MS.gene51804:CDS |
| GTCAGCATCAGACTTAATAA+TGG | 0.444822 | 3.4:-16011692 | None:intergenic |
| ATGAAAATTATCATATAGCC+AGG | 0.449250 | 3.4:-16011773 | None:intergenic |
| TTCCACCAACAAGTGGTTGC+AGG | 0.456050 | 3.4:+16012227 | MS.gene51804:CDS |
| GTCCTCCTTTGCTGCTGTTG+GGG | 0.462620 | 3.4:+16012653 | MS.gene51804:CDS |
| GTTAAGTTGCGTGGGATCCA+TGG | 0.465067 | 3.4:-16011494 | None:intergenic |
| CGCGTGCTCGCGCTTCAGAA+TGG | 0.465851 | 3.4:+16012627 | MS.gene51804:CDS |
| AGGTTTCGGTTTCAGCGGTT+AGG | 0.469924 | 3.4:-16011558 | None:intergenic |
| GGGGTCCTGCAACCACTTGT+TGG | 0.471537 | 3.4:-16012232 | None:intergenic |
| TTTGGTTGAATGAAACCAAA+AGG | 0.488252 | 3.4:-16011883 | None:intergenic |
| TAACGTCGATGGACTCACTT+TGG | 0.488365 | 3.4:+16011513 | MS.gene51804:CDS |
| ATACCATCACCTTCGCTTGG+AGG | 0.495325 | 3.4:-16012567 | None:intergenic |
| TATGGCCATCGTAGGTTTGG+AGG | 0.501051 | 3.4:-16011939 | None:intergenic |
| TTCTTCATCCACAAGAACTT+CGG | 0.502382 | 3.4:+16012467 | MS.gene51804:CDS |
| AGGAACTGTGAATGGTGTTA+TGG | 0.505135 | 3.4:-16011957 | None:intergenic |
| TGCGAGCAACATCTAGTTTG+TGG | 0.507760 | 3.4:-16011735 | None:intergenic |
| GACCGATCAAACAAGGATCA+AGG | 0.508082 | 3.4:-16011588 | None:intergenic |
| GTTGTGGGAAATGATGTAAT+AGG | 0.509266 | 3.4:+16012675 | MS.gene51804:CDS |
| GTCATGGAACGCATTGCTCC+AGG | 0.512533 | 3.4:+16011799 | MS.gene51804:CDS |
| ATGACCCTGGTGCAAGTTTG+AGG | 0.514751 | 3.4:-16012490 | None:intergenic |
| TATTCTTGATGATGCTGGTT+CGG | 0.515045 | 3.4:+16012587 | MS.gene51804:CDS |
| CATATGTCCATATAATTCAA+AGG | 0.515130 | 3.4:-16011841 | None:intergenic |
| AGAGTGATCGGAACAACACC+TGG | 0.522820 | 3.4:-16011817 | None:intergenic |
| GTGTGGCATTCTCAGACATT+CGG | 0.523325 | 3.4:+16012107 | MS.gene51804:CDS |
| GACCCTATACGTGTCGTGAC+AGG | 0.523457 | 3.4:-16012201 | None:intergenic |
| CAGAAGCATCAATAGTGGTT+CGG | 0.524075 | 3.4:-16012308 | None:intergenic |
| GTGAACGCATGTCCCGTGCT+TGG | 0.526053 | 3.4:+16011650 | MS.gene51804:CDS |
| TTATATGGACATATGTGTAC+AGG | 0.532436 | 3.4:+16011849 | MS.gene51804:CDS |
| CACAACCCCAACAGCAGCAA+AGG | 0.533314 | 3.4:-16012658 | None:intergenic |
| CACAACAGAAGCATCAATAG+TGG | 0.534843 | 3.4:-16012313 | None:intergenic |
| TTCGAATTGGACTCAGATGA+TGG | 0.535770 | 3.4:+16012150 | MS.gene51804:CDS |
| AGAATACCATCACCTTCGCT+TGG | 0.538987 | 3.4:-16012570 | None:intergenic |
| TTCGGCCTCAAACTTGCACC+AGG | 0.542270 | 3.4:+16012485 | MS.gene51804:CDS |
| GTTTGAGGCCGAAGTTCTTG+TGG | 0.547485 | 3.4:-16012475 | None:intergenic |
| GAAGTTCTTGTGGATGAAGA+AGG | 0.548594 | 3.4:-16012465 | None:intergenic |
| TCCATCGACGTTAAGTTGCG+TGG | 0.552863 | 3.4:-16011503 | None:intergenic |
| TGGACTCACTTTGGATGATG+AGG | 0.553001 | 3.4:+16011522 | MS.gene51804:CDS |
| GGACTCACTTTGGATGATGA+GGG | 0.555606 | 3.4:+16011523 | MS.gene51804:CDS |
| GTCCTGCAACCACTTGTTGG+TGG | 0.558049 | 3.4:-16012229 | None:intergenic |
| TAATTCAAAGGGAGAGTGAT+CGG | 0.563226 | 3.4:-16011829 | None:intergenic |
| GATGGTATTCTTGATGATGC+TGG | 0.563862 | 3.4:+16012582 | MS.gene51804:CDS |
| GCATCCTTGATGATGGTCCC+TGG | 0.565287 | 3.4:+16011755 | MS.gene51804:CDS |
| GTAAAAGTGAAAGGAGCCGC+AGG | 0.566547 | 3.4:-16012531 | None:intergenic |
| ATATGTCCATATAATTCAAA+GGG | 0.569123 | 3.4:-16011840 | None:intergenic |
| AGATGATGGTGTGCGCAACT+GGG | 0.574460 | 3.4:+16012164 | MS.gene51804:CDS |
| CCCACGCAACTTAACGTCGA+TGG | 0.575889 | 3.4:+16011502 | MS.gene51804:CDS |
| ATTCAACCAAAGGTAGCTCA+AGG | 0.586529 | 3.4:+16011895 | MS.gene51804:CDS |
| AGGAGAGGTTTCGGTTTCAG+CGG | 0.592635 | 3.4:-16011563 | None:intergenic |
| TTTGGCATAACATCAGGTAT+GGG | 0.593429 | 3.4:-16012252 | None:intergenic |
| CATTCTCAGACATTCGGACA+AGG | 0.594459 | 3.4:+16012113 | MS.gene51804:CDS |
| AAACACGACACAGGTGGTGT+TGG | 0.594473 | 3.4:+16012423 | MS.gene51804:CDS |
| GCATAGCAGTTTGAGCAGCA+AGG | 0.596401 | 3.4:-16012395 | None:intergenic |
| TTCTTGTGGATGAAGAAGGA+AGG | 0.602821 | 3.4:-16012461 | None:intergenic |
| CATCCTCCAAGCGAAGGTGA+TGG | 0.605652 | 3.4:+16012564 | MS.gene51804:CDS |
| CCATCGACGTTAAGTTGCGT+GGG | 0.607126 | 3.4:-16011502 | None:intergenic |
| GGAACAAATGTTAGTGTTCG+GGG | 0.612761 | 3.4:+16012696 | MS.gene51804:CDS |
| TTAGCACCAGTAAAAGTGAA+AGG | 0.621047 | 3.4:-16012540 | None:intergenic |
| AACAAATGTTAGTGTTCGGG+GGG | 0.622813 | 3.4:+16012698 | MS.gene51804:CDS |
| TGAAAATTATCATATAGCCA+GGG | 0.623131 | 3.4:-16011772 | None:intergenic |
| AACCCCAACAGCAGCAAAGG+AGG | 0.624360 | 3.4:-16012655 | None:intergenic |
| GTTGCTCGCATCCTTGATGA+TGG | 0.625718 | 3.4:+16011748 | MS.gene51804:CDS |
| TATTGTGCTTGGTCTTCCTG+CGG | 0.628511 | 3.4:+16012515 | MS.gene51804:CDS |
| AATGGTGTTATGGCCATCGT+AGG | 0.630125 | 3.4:-16011947 | None:intergenic |
| TCACATGTAGGAACTGTGAA+TGG | 0.631120 | 3.4:-16011965 | None:intergenic |
| ATAGCCAGGGACCATCATCA+AGG | 0.632624 | 3.4:-16011759 | None:intergenic |
| GAACAAATGTTAGTGTTCGG+GGG | 0.636243 | 3.4:+16012697 | MS.gene51804:CDS |
| GCTAAACATCCTCCAAGCGA+AGG | 0.636647 | 3.4:+16012558 | MS.gene51804:CDS |
| ATCAAACAAGGATCAAGGAT+AGG | 0.641814 | 3.4:-16011583 | None:intergenic |
| ATGCAAGCCAAACACGACAC+AGG | 0.650653 | 3.4:+16012414 | MS.gene51804:CDS |
| GGTGTCCTCCAAACCTACGA+TGG | 0.651091 | 3.4:+16011934 | MS.gene51804:CDS |
| TTGGCATAACATCAGGTATG+GGG | 0.652476 | 3.4:-16012251 | None:intergenic |
| ACAAGGATCAAGGATAGGAG+AGG | 0.663267 | 3.4:-16011578 | None:intergenic |
| GGTCGGCTTCCACCAACAAG+TGG | 0.663473 | 3.4:+16012220 | MS.gene51804:CDS |
| GATGATGGTGTGCGCAACTG+GGG | 0.668817 | 3.4:+16012165 | MS.gene51804:CDS |
| CAAGCACAATAGAATGACCC+TGG | 0.685729 | 3.4:-16012503 | None:intergenic |
| CAAGCCAAACACGACACAGG+TGG | 0.698957 | 3.4:+16012417 | MS.gene51804:CDS |
| TGTCACGACACGTATAGGGT+CGG | 0.710118 | 3.4:+16012203 | MS.gene51804:CDS |
| GAGCAACATCTAGTTTGTGG+TGG | 0.714874 | 3.4:-16011732 | None:intergenic |
| TCGGCCTCAAACTTGCACCA+GGG | 0.726007 | 3.4:+16012486 | MS.gene51804:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGTCCATATAATTCAAA+GGG | - | chr3.4:16011843-16011862 | None:intergenic | 20.0% |
| !! | TCACTTAAAAATAAAAGATC+CGG | - | chr3.4:16012893-16012912 | None:intergenic | 20.0% |
| !!! | AATTTTTAATTGGTGACAAT+GGG | - | chr3.4:16013671-16013690 | None:intergenic | 20.0% |
| !!! | CTTCAATGTCAATTTTTAAT+TGG | - | chr3.4:16013681-16013700 | None:intergenic | 20.0% |
| !!! | GAAGTTCTTCAATTTTATTT+CGG | - | chr3.4:16012928-16012947 | None:intergenic | 20.0% |
| !!! | TGATAATTTTCATATAGTCA+TGG | + | chr3.4:16011783-16011802 | MS.gene51804:CDS | 20.0% |
| ! | ATGAAAATTATCATATAGCC+AGG | - | chr3.4:16011776-16011795 | None:intergenic | 25.0% |
| ! | CAAATTGATTAGAAAGTTGA+CGG | - | chr3.4:16013168-16013187 | None:intergenic | 25.0% |
| ! | CACAGTTTCTCATATTTATA+AGG | - | chr3.4:16012072-16012091 | None:intergenic | 25.0% |
| ! | CATATGTCCATATAATTCAA+AGG | - | chr3.4:16011844-16011863 | None:intergenic | 25.0% |
| ! | TCATATCACTATTGACATTA+TGG | + | chr3.4:16013060-16013079 | MS.gene51804:intron | 25.0% |
| ! | TGAAAATTATCATATAGCCA+GGG | - | chr3.4:16011775-16011794 | None:intergenic | 25.0% |
| ! | TGATGAACAAAATGTAATTG+CGG | + | chr3.4:16012755-16012774 | MS.gene51804:intron | 25.0% |
| !! | AACCAGCTTGAAAATTATTT+TGG | - | chr3.4:16012278-16012297 | None:intergenic | 25.0% |
| !! | ACATTTTGTTCATCATACAA+AGG | - | chr3.4:16012750-16012769 | None:intergenic | 25.0% |
| !!! | AACCAAAATAATTTTCAAGC+TGG | + | chr3.4:16012273-16012292 | MS.gene51804:CDS | 25.0% |
| !!! | CAATTTTTAATTGGTGACAA+TGG | - | chr3.4:16013672-16013691 | None:intergenic | 25.0% |
| !!! | GCTTGAAAATTATTTTGGTT+TGG | - | chr3.4:16012273-16012292 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGGGAATTGTATT+CGG | - | chr3.4:16012848-16012867 | None:intergenic | 25.0% |
| AGTAACAAGCTCCTTAAAAT+CGG | - | chr3.4:16013566-16013585 | None:intergenic | 30.0% | |
| CAACTTTCTAATCAATTTGC+AGG | + | chr3.4:16013169-16013188 | MS.gene51804:intron | 30.0% | |
| GATGAACAAAATGTAATTGC+GGG | + | chr3.4:16012756-16012775 | MS.gene51804:intron | 30.0% | |
| TAGGAACAAATGTTAGTGTT+CGG | + | chr3.4:16012694-16012713 | MS.gene51804:CDS | 30.0% | |
| TTATATGGACATATGTGTAC+AGG | + | chr3.4:16011849-16011868 | MS.gene51804:CDS | 30.0% | |
| TTTGGTTGAATGAAACCAAA+AGG | - | chr3.4:16011886-16011905 | None:intergenic | 30.0% | |
| ! | ATAATGGTTACACGTTTTCT+AGG | - | chr3.4:16011679-16011698 | None:intergenic | 30.0% |
| !! | TTAAGTTGGGAATTGTATTC+GGG | - | chr3.4:16012847-16012866 | None:intergenic | 30.0% |
| !!! | ACTTTCCACTCTTTTTTCAA+TGG | - | chr3.4:16012018-16012037 | None:intergenic | 30.0% |
| !!! | GAAGAACTTCATTTTTTGCT+TGG | + | chr3.4:16012938-16012957 | MS.gene51804:intron | 30.0% |
| !!! | TTTTGGTTTCATTCAACCAA+AGG | + | chr3.4:16011885-16011904 | MS.gene51804:CDS | 30.0% |
| AAAAAACGACCGATCAAACA+AGG | - | chr3.4:16011598-16011617 | None:intergenic | 35.0% | |
| AACTGTGTGTTTCTTGTTAC+AGG | + | chr3.4:16012085-16012104 | MS.gene51804:intron | 35.0% | |
| AGACTCTTAAACCAAGTGAA+AGG | - | chr3.4:16013340-16013359 | None:intergenic | 35.0% | |
| AGGAACAAATGTTAGTGTTC+GGG | + | chr3.4:16012695-16012714 | MS.gene51804:CDS | 35.0% | |
| ATAGGATAGTGATTAGATGC+AGG | - | chr3.4:16013463-16013482 | None:intergenic | 35.0% | |
| ATCAAACAAGGATCAAGGAT+AGG | - | chr3.4:16011586-16011605 | None:intergenic | 35.0% | |
| ATGCACTTTCGTAACGAAAA+TGG | - | chr3.4:16013531-16013550 | None:intergenic | 35.0% | |
| CACTCTCCCTTTGAATTATA+TGG | + | chr3.4:16011834-16011853 | MS.gene51804:CDS | 35.0% | |
| GACATTATGGATTCTGTTCT+TGG | + | chr3.4:16013073-16013092 | MS.gene51804:intron | 35.0% | |
| GGTGGAACTGAAACAAAAAT+CGG | - | chr3.4:16011717-16011736 | None:intergenic | 35.0% | |
| GTAACAAGCTCCTTAAAATC+GGG | - | chr3.4:16013565-16013584 | None:intergenic | 35.0% | |
| GTCAGCATCAGACTTAATAA+TGG | - | chr3.4:16011695-16011714 | None:intergenic | 35.0% | |
| GTGAAAGGATAACCTTCTAT+CGG | - | chr3.4:16013325-16013344 | None:intergenic | 35.0% | |
| GTGCTCTTGCTAATAATTTG+TGG | + | chr3.4:16013395-16013414 | MS.gene51804:intron | 35.0% | |
| GTTGTGGGAAATGATGTAAT+AGG | + | chr3.4:16012675-16012694 | MS.gene51804:CDS | 35.0% | |
| TAATTCAAAGGGAGAGTGAT+CGG | - | chr3.4:16011832-16011851 | None:intergenic | 35.0% | |
| TAGAAGGTTATCCTTTCACT+TGG | + | chr3.4:16013326-16013345 | MS.gene51804:intron | 35.0% | |
| TATTATGGCTATCCTAATGG+AGG | + | chr3.4:16013115-16013134 | MS.gene51804:intron | 35.0% | |
| TGAAAGGATAACCTTCTATC+GGG | - | chr3.4:16013324-16013343 | None:intergenic | 35.0% | |
| TGCTACTATTGAAACTCTAG+TGG | + | chr3.4:16013435-16013454 | MS.gene51804:intron | 35.0% | |
| TTAGCACCAGTAAAAGTGAA+AGG | - | chr3.4:16012543-16012562 | None:intergenic | 35.0% | |
| TTCACTTGGTTTAAGAGTCT+TGG | + | chr3.4:16013340-16013359 | MS.gene51804:intron | 35.0% | |
| TTCTTCATCCACAAGAACTT+CGG | + | chr3.4:16012467-16012486 | MS.gene51804:CDS | 35.0% | |
| TTGACGGAGAAAATTCTAAG+CGG | - | chr3.4:16013152-16013171 | None:intergenic | 35.0% | |
| TTTGGCATAACATCAGGTAT+GGG | - | chr3.4:16012255-16012274 | None:intergenic | 35.0% | |
| ! | ATCCTTGATCCTTGTTTGAT+CGG | + | chr3.4:16011586-16011605 | MS.gene51804:CDS | 35.0% |
| ! | GCAATTAGAACCCGATTTTA+AGG | + | chr3.4:16013552-16013571 | MS.gene51804:intron | 35.0% |
| ! | GCTACTAAACTCATTTTCCT+TGG | - | chr3.4:16012800-16012819 | None:intergenic | 35.0% |
| !! | ATTTTCGTTACGAAAGTGCA+TGG | + | chr3.4:16013530-16013549 | MS.gene51804:intron | 35.0% |
| !! | TATTCTTGATGATGCTGGTT+CGG | + | chr3.4:16012587-16012606 | MS.gene51804:CDS | 35.0% |
| !!! | GGAGAGCATTTTAACAAGAT+AGG | - | chr3.4:16013481-16013500 | None:intergenic | 35.0% |
| !!! | TTCCACTCTTTTTTCAATGG+TGG | - | chr3.4:16012015-16012034 | None:intergenic | 35.0% |
| !!! | TTGTTTGATCGGTCGTTTTT+TGG | + | chr3.4:16011597-16011616 | MS.gene51804:CDS | 35.0% |
| !!! | TTTTGGTTTGGCATAACATC+AGG | - | chr3.4:16012261-16012280 | None:intergenic | 35.0% |
| AACAAATGTTAGTGTTCGGG+GGG | + | chr3.4:16012698-16012717 | MS.gene51804:CDS | 40.0% | |
| ACAATTGCACAACACATGGT+TGG | + | chr3.4:16013711-16013730 | MS.gene51804:intron | 40.0% | |
| ATCAAGGATAGGAGAGGTTT+CGG | - | chr3.4:16011575-16011594 | None:intergenic | 40.0% | |
| ATTCAACCAAAGGTAGCTCA+AGG | + | chr3.4:16011895-16011914 | MS.gene51804:CDS | 40.0% | |
| CCAACTTAAAGTTCCTAGTC+CGG | + | chr3.4:16012858-16012877 | MS.gene51804:intron | 40.0% | |
| CCACACTTTAAGTCACATGT+AGG | - | chr3.4:16011980-16011999 | None:intergenic | 40.0% | |
| CCTACATGTGACTTAAAGTG+TGG | + | chr3.4:16011977-16011996 | MS.gene51804:intron | 40.0% | |
| CTAATCAATTTGCAGGTTCG+TGG | + | chr3.4:16013176-16013195 | MS.gene51804:intron | 40.0% | |
| CTCCACCATTGAAAAAAGAG+TGG | + | chr3.4:16012010-16012029 | MS.gene51804:intron | 40.0% | |
| CTGAATCAATAACCGCTTGA+CGG | - | chr3.4:16013288-16013307 | None:intergenic | 40.0% | |
| GAACAAATGTTAGTGTTCGG+GGG | + | chr3.4:16012697-16012716 | MS.gene51804:CDS | 40.0% | |
| GAAGTTCTTGTGGATGAAGA+AGG | - | chr3.4:16012468-16012487 | None:intergenic | 40.0% | |
| GACATATGTGTACAGGTTCA+TGG | + | chr3.4:16011856-16011875 | MS.gene51804:CDS | 40.0% | |
| GAGTCCAATTCGAACAAGTT+AGG | - | chr3.4:16012144-16012163 | None:intergenic | 40.0% | |
| GGAAAATGAGTTTAGTAGCG+TGG | + | chr3.4:16012801-16012820 | MS.gene51804:intron | 40.0% | |
| GGAACAAATGTTAGTGTTCG+GGG | + | chr3.4:16012696-16012715 | MS.gene51804:CDS | 40.0% | |
| GGCTATTATGGCTATCCTAA+TGG | + | chr3.4:16013112-16013131 | MS.gene51804:intron | 40.0% | |
| GTAGACAATTGCACAACACA+TGG | + | chr3.4:16013707-16013726 | MS.gene51804:intron | 40.0% | |
| GTTTAGTAGCGTGGAATTGT+CGG | + | chr3.4:16012810-16012829 | MS.gene51804:intron | 40.0% | |
| GTTTGGCATAACATCAGGTA+TGG | - | chr3.4:16012256-16012275 | None:intergenic | 40.0% | |
| TAGAAGACATGTCTGTTTGG+CGG | + | chr3.4:16013641-16013660 | MS.gene51804:intron | 40.0% | |
| TCACATGTAGGAACTGTGAA+TGG | - | chr3.4:16011968-16011987 | None:intergenic | 40.0% | |
| TGGAAAGTTCGTGCTAACAA+TGG | + | chr3.4:16012030-16012049 | MS.gene51804:intron | 40.0% | |
| TGGATTCTGTTCTTGGTACT+TGG | + | chr3.4:16013080-16013099 | MS.gene51804:intron | 40.0% | |
| TGTGTTTCTTGTTACAGGTG+TGG | + | chr3.4:16012090-16012109 | MS.gene51804:intron | 40.0% | |
| TTCGAATTGGACTCAGATGA+TGG | + | chr3.4:16012150-16012169 | MS.gene51804:CDS | 40.0% | |
| TTCTTGTGGATGAAGAAGGA+AGG | - | chr3.4:16012464-16012483 | None:intergenic | 40.0% | |
| TTGGCATAACATCAGGTATG+GGG | - | chr3.4:16012254-16012273 | None:intergenic | 40.0% | |
| TTTAGTAGCGTGGAATTGTC+GGG | + | chr3.4:16012811-16012830 | MS.gene51804:intron | 40.0% | |
| ! | AGGAACTGTGAATGGTGTTA+TGG | - | chr3.4:16011960-16011979 | None:intergenic | 40.0% |
| ! | CGGACTAGGAACTTTAAGTT+GGG | - | chr3.4:16012860-16012879 | None:intergenic | 40.0% |
| ! | GTTTTCTAGGTTTCCAAGCA+CGG | - | chr3.4:16011666-16011685 | None:intergenic | 40.0% |
| ! | TGGAGAATGACTGGCTATTA+TGG | + | chr3.4:16013100-16013119 | MS.gene51804:intron | 40.0% |
| ! | TTTTCTAGGTTTCCAAGCAC+GGG | - | chr3.4:16011665-16011684 | None:intergenic | 40.0% |
| !! | CAAGGCATCATCAGTTTTCT+TGG | + | chr3.4:16011913-16011932 | MS.gene51804:CDS | 40.0% |
| !! | CACAACAGAAGCATCAATAG+TGG | - | chr3.4:16012316-16012335 | None:intergenic | 40.0% |
| !! | CAGAAGCATCAATAGTGGTT+CGG | - | chr3.4:16012311-16012330 | None:intergenic | 40.0% |
| !! | GATGGTATTCTTGATGATGC+TGG | + | chr3.4:16012582-16012601 | MS.gene51804:CDS | 40.0% |
| !! | GTGTCCTAACTTGTTCGAAT+TGG | + | chr3.4:16012137-16012156 | MS.gene51804:CDS | 40.0% |
| AAAGATCCGGATTGAAGAGC+CGG | - | chr3.4:16012880-16012899 | None:intergenic | 45.0% | |
| AAATGGCGTGTATGATGCTG+AGG | - | chr3.4:16013514-16013533 | None:intergenic | 45.0% | |
| ACAAGGATCAAGGATAGGAG+AGG | - | chr3.4:16011581-16011600 | None:intergenic | 45.0% | |
| AGAATACCATCACCTTCGCT+TGG | - | chr3.4:16012573-16012592 | None:intergenic | 45.0% | |
| ATGATGCCTTGAGCTACCTT+TGG | - | chr3.4:16011904-16011923 | None:intergenic | 45.0% | |
| CAAGCACAATAGAATGACCC+TGG | - | chr3.4:16012506-16012525 | None:intergenic | 45.0% | |
| CAGGGTCATTCTATTGTGCT+TGG | + | chr3.4:16012504-16012523 | MS.gene51804:CDS | 45.0% | |
| CATTCTCAGACATTCGGACA+AGG | + | chr3.4:16012113-16012132 | MS.gene51804:CDS | 45.0% | |
| CCTAGATGCAAGTGAGAAGA+GGG | + | chr3.4:16013225-16013244 | MS.gene51804:intron | 45.0% | |
| CTAGATGCAAGTGAGAAGAG+GGG | + | chr3.4:16013226-16013245 | MS.gene51804:intron | 45.0% | |
| CTTGGTACTTGGAGAATGAC+TGG | + | chr3.4:16013091-16013110 | MS.gene51804:intron | 45.0% | |
| GACCGATCAAACAAGGATCA+AGG | - | chr3.4:16011591-16011610 | None:intergenic | 45.0% | |
| GCGTAGAAGACATGTCTGTT+TGG | + | chr3.4:16013638-16013657 | MS.gene51804:intron | 45.0% | |
| GGACATGCGTTCACTGAAAT+AGG | - | chr3.4:16011644-16011663 | None:intergenic | 45.0% | |
| GGACTCACTTTGGATGATGA+GGG | + | chr3.4:16011523-16011542 | MS.gene51804:CDS | 45.0% | |
| GGTTTCAGCGGTTAGGTTAA+GGG | - | chr3.4:16011554-16011573 | None:intergenic | 45.0% | |
| GTGTGGCATTCTCAGACATT+CGG | + | chr3.4:16012107-16012126 | MS.gene51804:CDS | 45.0% | |
| TAGATGCAAGTGAGAAGAGG+GGG | + | chr3.4:16013227-16013246 | MS.gene51804:intron | 45.0% | |
| TCCTAGATGCAAGTGAGAAG+AGG | + | chr3.4:16013224-16013243 | MS.gene51804:intron | 45.0% | |
| TCTACGCACGAAGACAACTT+CGG | - | chr3.4:16013625-16013644 | None:intergenic | 45.0% | |
| TGGACTCACTTTGGATGATG+AGG | + | chr3.4:16011522-16011541 | MS.gene51804:CDS | 45.0% | |
| TGTTATGGCCATCGTAGGTT+TGG | - | chr3.4:16011945-16011964 | None:intergenic | 45.0% | |
| TTAGTAGCGTGGAATTGTCG+GGG | + | chr3.4:16012812-16012831 | MS.gene51804:intron | 45.0% | |
| TTGTCAGATCTCCCGATAGA+AGG | + | chr3.4:16013310-16013329 | MS.gene51804:intron | 45.0% | |
| ! | AACACATGGTTGGTGTCTTC+AGG | + | chr3.4:16013721-16013740 | MS.gene51804:intron | 45.0% |
| ! | ATGAGAAGAGTACACCTTCC+AGG | - | chr3.4:16013593-16013612 | None:intergenic | 45.0% |
| ! | CCGGACTAGGAACTTTAAGT+TGG | - | chr3.4:16012861-16012880 | None:intergenic | 45.0% |
| ! | GAGCAACATCTAGTTTGTGG+TGG | - | chr3.4:16011735-16011754 | None:intergenic | 45.0% |
| ! | GCTTGTTACTAACTCCTGGA+AGG | + | chr3.4:16013576-16013595 | MS.gene51804:intron | 45.0% |
| ! | TAACGTCGATGGACTCACTT+TGG | + | chr3.4:16011513-16011532 | MS.gene51804:CDS | 45.0% |
| ! | TATTGTGCTTGGTCTTCCTG+CGG | + | chr3.4:16012515-16012534 | MS.gene51804:CDS | 45.0% |
| ! | TGCGAGCAACATCTAGTTTG+TGG | - | chr3.4:16011738-16011757 | None:intergenic | 45.0% |
| ! | TTTCAAGCTGGTTCTTCTGC+TGG | + | chr3.4:16012285-16012304 | MS.gene51804:CDS | 45.0% |
| !! | AATGGTGTTATGGCCATCGT+AGG | - | chr3.4:16011950-16011969 | None:intergenic | 45.0% |
| !! | AGGAGCTTGTTACTAACTCC+TGG | + | chr3.4:16013572-16013591 | MS.gene51804:intron | 45.0% |
| !! | CGTCAAGCGGTTATTGATTC+AGG | + | chr3.4:16013286-16013305 | MS.gene51804:intron | 45.0% |
| AAACACGACACAGGTGGTGT+TGG | + | chr3.4:16012423-16012442 | MS.gene51804:CDS | 50.0% | |
| AACACCACCTGTGTCGTGTT+TGG | - | chr3.4:16012424-16012443 | None:intergenic | 50.0% | |
| AAGCCTGTCACGACACGTAT+AGG | + | chr3.4:16012198-16012217 | MS.gene51804:CDS | 50.0% | |
| AATTGCGGGTCCTGATGATC+AGG | + | chr3.4:16012770-16012789 | MS.gene51804:intron | 50.0% | |
| AGAGTGATCGGAACAACACC+TGG | - | chr3.4:16011820-16011839 | None:intergenic | 50.0% | |
| AGCCTGTCACGACACGTATA+GGG | + | chr3.4:16012199-16012218 | MS.gene51804:CDS | 50.0% | |
| AGGAGAGGTTTCGGTTTCAG+CGG | - | chr3.4:16011566-16011585 | None:intergenic | 50.0% | |
| AGGTTTCGGTTTCAGCGGTT+AGG | - | chr3.4:16011561-16011580 | None:intergenic | 50.0% | |
| AGTCCTCCTTTGCTGCTGTT+GGG | + | chr3.4:16012652-16012671 | MS.gene51804:CDS | 50.0% | |
| ATACCATCACCTTCGCTTGG+AGG | - | chr3.4:16012570-16012589 | None:intergenic | 50.0% | |
| ATAGCCAGGGACCATCATCA+AGG | - | chr3.4:16011762-16011781 | None:intergenic | 50.0% | |
| ATGACCCTGGTGCAAGTTTG+AGG | - | chr3.4:16012493-16012512 | None:intergenic | 50.0% | |
| ATGCAAGCCAAACACGACAC+AGG | + | chr3.4:16012414-16012433 | MS.gene51804:CDS | 50.0% | |
| CCCTCTTCTCACTTGCATCT+AGG | - | chr3.4:16013228-16013247 | None:intergenic | 50.0% | |
| CGGTTTCAGCGGTTAGGTTA+AGG | - | chr3.4:16011555-16011574 | None:intergenic | 50.0% | |
| GCAGTTCTACGACCTCCATT+AGG | - | chr3.4:16013130-16013149 | None:intergenic | 50.0% | |
| GCATAGCAGTTTGAGCAGCA+AGG | - | chr3.4:16012398-16012417 | None:intergenic | 50.0% | |
| GCTAAACATCCTCCAAGCGA+AGG | + | chr3.4:16012558-16012577 | MS.gene51804:CDS | 50.0% | |
| GTAAAAGTGAAAGGAGCCGC+AGG | - | chr3.4:16012534-16012553 | None:intergenic | 50.0% | |
| GTTGCTCGCATCCTTGATGA+TGG | + | chr3.4:16011748-16011767 | MS.gene51804:CDS | 50.0% | |
| TATCCATGGCTTCCGTCAAG+CGG | + | chr3.4:16013273-16013292 | MS.gene51804:intron | 50.0% | |
| TATGGCCATCGTAGGTTTGG+AGG | - | chr3.4:16011942-16011961 | None:intergenic | 50.0% | |
| TGTCACGACACGTATAGGGT+CGG | + | chr3.4:16012203-16012222 | MS.gene51804:CDS | 50.0% | |
| TGTCTTCATGTAGACCGCAC+CGG | + | chr3.4:16012968-16012987 | MS.gene51804:intron | 50.0% | |
| TTCCACCAACAAGTGGTTGC+AGG | + | chr3.4:16012227-16012246 | MS.gene51804:CDS | 50.0% | |
| TTTGCTGCTGTTGGGGTTGT+GGG | + | chr3.4:16012660-16012679 | MS.gene51804:CDS | 50.0% | |
| ! | AGATGATGGTGTGCGCAACT+GGG | + | chr3.4:16012164-16012183 | MS.gene51804:CDS | 50.0% |
| ! | ATGGTTGGTGTCTTCAGGTG+AGG | + | chr3.4:16013726-16013745 | MS.gene51804:intron | 50.0% |
| ! | CAGGTTCATGGTCTGCCTTT+TGG | + | chr3.4:16011868-16011887 | MS.gene51804:CDS | 50.0% |
| ! | CCATCGACGTTAAGTTGCGT+GGG | - | chr3.4:16011505-16011524 | None:intergenic | 50.0% |
| ! | GCAGGTTCGTGGTGCATTTT+TGG | + | chr3.4:16013187-16013206 | MS.gene51804:intron | 50.0% |
| ! | GTTTGAGGCCGAAGTTCTTG+TGG | - | chr3.4:16012478-16012497 | None:intergenic | 50.0% |
| ! | TCCATCGACGTTAAGTTGCG+TGG | - | chr3.4:16011506-16011525 | None:intergenic | 50.0% |
| !! | GCGGCTCCTTTCACTTTTAC+TGG | + | chr3.4:16012534-16012553 | MS.gene51804:CDS | 50.0% |
| !!! | GCGGGGGTCTTGCTTTATTT+TGG | + | chr3.4:16012996-16013015 | MS.gene51804:intron | 50.0% |
| AACCCCAACAGCAGCAAAGG+AGG | - | chr3.4:16012658-16012677 | None:intergenic | 55.0% | |
| AACCTTTCCTCCACCGCTCA+TGG | - | chr3.4:16013370-16013389 | None:intergenic | 55.0% | |
| AGACTGCGGTGGCTTATCCA+TGG | + | chr3.4:16013259-16013278 | MS.gene51804:intron | 55.0% | |
| CAAGCCAAACACGACACAGG+TGG | + | chr3.4:16012417-16012436 | MS.gene51804:CDS | 55.0% | |
| CACAACCCCAACAGCAGCAA+AGG | - | chr3.4:16012661-16012680 | None:intergenic | 55.0% | |
| CATCCTCCAAGCGAAGGTGA+TGG | + | chr3.4:16012564-16012583 | MS.gene51804:CDS | 55.0% | |
| CCCACGCAACTTAACGTCGA+TGG | + | chr3.4:16011502-16011521 | MS.gene51804:CDS | 55.0% | |
| CCTAGTCCGGCTCTTCAATC+CGG | + | chr3.4:16012871-16012890 | MS.gene51804:intron | 55.0% | |
| CCTGATGATCAGGTCTGCCA+AGG | + | chr3.4:16012780-16012799 | MS.gene51804:intron | 55.0% | |
| CCTTGGCAGACCTGATCATC+AGG | - | chr3.4:16012783-16012802 | None:intergenic | 55.0% | |
| CGTGTATGATGCTGAGGCAG+AGG | - | chr3.4:16013508-16013527 | None:intergenic | 55.0% | |
| CTTTGCTGCTGTTGGGGTTG+TGG | + | chr3.4:16012659-16012678 | MS.gene51804:CDS | 55.0% | |
| GACCCTATACGTGTCGTGAC+AGG | - | chr3.4:16012204-16012223 | None:intergenic | 55.0% | |
| GAGTCCTCCTTTGCTGCTGT+TGG | + | chr3.4:16012651-16012670 | MS.gene51804:CDS | 55.0% | |
| GAGTCTTGGTACGCCATGAG+CGG | + | chr3.4:16013354-16013373 | MS.gene51804:intron | 55.0% | |
| GGATAAGCCACCGCAGTCTA+CGG | - | chr3.4:16013258-16013277 | None:intergenic | 55.0% | |
| GGTGTCCTCCAAACCTACGA+TGG | + | chr3.4:16011934-16011953 | MS.gene51804:CDS | 55.0% | |
| GTCATGGAACGCATTGCTCC+AGG | + | chr3.4:16011799-16011818 | MS.gene51804:CDS | 55.0% | |
| GTCCTCCTTTGCTGCTGTTG+GGG | + | chr3.4:16012653-16012672 | MS.gene51804:CDS | 55.0% | |
| TAACCGCTTGACGGAAGCCA+TGG | - | chr3.4:16013279-16013298 | None:intergenic | 55.0% | |
| TCGGCCTCAAACTTGCACCA+GGG | + | chr3.4:16012486-16012505 | MS.gene51804:CDS | 55.0% | |
| TTCGGCCTCAAACTTGCACC+AGG | + | chr3.4:16012485-16012504 | MS.gene51804:CDS | 55.0% | |
| ! | CAGATGATGGTGTGCGCAAC+TGG | + | chr3.4:16012163-16012182 | MS.gene51804:CDS | 55.0% |
| ! | GATGATGGTGTGCGCAACTG+GGG | + | chr3.4:16012165-16012184 | MS.gene51804:CDS | 55.0% |
| ! | GTCCTGCAACCACTTGTTGG+TGG | - | chr3.4:16012232-16012251 | None:intergenic | 55.0% |
| ! | TGATGCTGAGGCAGAGGTGT+AGG | - | chr3.4:16013502-16013521 | None:intergenic | 55.0% |
| !! | GCATCCTTGATGATGGTCCC+TGG | + | chr3.4:16011755-16011774 | MS.gene51804:CDS | 55.0% |
| AGCGTGGAATTGTCGGGGTG+TGG | + | chr3.4:16012817-16012836 | MS.gene51804:intron | 60.0% | |
| CCGGATTGAAGAGCCGGACT+AGG | - | chr3.4:16012874-16012893 | None:intergenic | 60.0% | |
| GGGGTCCTGCAACCACTTGT+TGG | - | chr3.4:16012235-16012254 | None:intergenic | 60.0% | |
| GTGAACGCATGTCCCGTGCT+TGG | + | chr3.4:16011650-16011669 | MS.gene51804:CDS | 60.0% | |
| TCTTGGTACGCCATGAGCGG+TGG | + | chr3.4:16013357-16013376 | MS.gene51804:intron | 60.0% | |
| ! | CATGTAGACCGCACCGGTAG+AGG | + | chr3.4:16012974-16012993 | MS.gene51804:intron | 60.0% |
| ! | GGTCGGCTTCCACCAACAAG+TGG | + | chr3.4:16012220-16012239 | MS.gene51804:CDS | 60.0% |
| AGCAAGACCCCCGCCTCTAC+CGG | - | chr3.4:16012990-16013009 | None:intergenic | 65.0% | |
| CGCCATGAGCGGTGGAGGAA+AGG | + | chr3.4:16013365-16013384 | MS.gene51804:intron | 65.0% | |
| CGCGTGCTCGCGCTTCAGAA+TGG | + | chr3.4:16012627-16012646 | MS.gene51804:CDS | 65.0% | |
| TGGTACGCCATGAGCGGTGG+AGG | + | chr3.4:16013360-16013379 | MS.gene51804:intron | 65.0% | |
| ! | GTAGACCGCACCGGTAGAGG+CGG | + | chr3.4:16012977-16012996 | MS.gene51804:intron | 65.0% |
| ! | TAGACCGCACCGGTAGAGGC+GGG | + | chr3.4:16012978-16012997 | MS.gene51804:intron | 65.0% |
| GGCACAGCCGTAGACTGCGG+TGG | + | chr3.4:16013248-16013267 | MS.gene51804:intron | 70.0% | |
| ! | AGACCGCACCGGTAGAGGCG+GGG | + | chr3.4:16012979-16012998 | MS.gene51804:intron | 70.0% |
| ! | GGGGGCACAGCCGTAGACTG+CGG | + | chr3.4:16013245-16013264 | MS.gene51804:intron | 70.0% |
| GACCCCCGCCTCTACCGGTG+CGG | - | chr3.4:16012985-16013004 | None:intergenic | 75.0% | |
| ! | GACCGCACCGGTAGAGGCGG+GGG | + | chr3.4:16012980-16012999 | MS.gene51804:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 16011496 | 16013763 | 16011496 | ID=MS.gene51804 |
| chr3.4 | mRNA | 16011496 | 16013763 | 16011496 | ID=MS.gene51804.t1;Parent=MS.gene51804 |
| chr3.4 | exon | 16011496 | 16011983 | 16011496 | ID=MS.gene51804.t1.exon1;Parent=MS.gene51804.t1 |
| chr3.4 | CDS | 16011496 | 16011983 | 16011496 | ID=cds.MS.gene51804.t1;Parent=MS.gene51804.t1 |
| chr3.4 | exon | 16012107 | 16012734 | 16012107 | ID=MS.gene51804.t1.exon2;Parent=MS.gene51804.t1 |
| chr3.4 | CDS | 16012107 | 16012734 | 16012107 | ID=cds.MS.gene51804.t1;Parent=MS.gene51804.t1 |
| chr3.4 | exon | 16013743 | 16013763 | 16013743 | ID=MS.gene51804.t1.exon3;Parent=MS.gene51804.t1 |
| chr3.4 | CDS | 16013743 | 16013763 | 16013743 | ID=cds.MS.gene51804.t1;Parent=MS.gene51804.t1 |
| Gene Sequence |
| Protein sequence |
