Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22111.t1 | AES70414.1 | 56.1 | 346 | 86 | 3 | 1 | 346 | 1 | 280 | 6.20E-95 | 357.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22111.t1 | O04244 | 30.4 | 135 | 90 | 2 | 84 | 216 | 7 | 139 | 7.4e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22111.t1 | G7J017 | 56.1 | 346 | 86 | 3 | 1 | 346 | 1 | 280 | 4.5e-95 | 357.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22111.t1 | MTR_3g053920 | 54.913 | 346 | 90 | 3 | 1 | 346 | 1 | 280 | 3.49e-120 | 350 |
| MS.gene22111.t1 | MTR_2g061500 | 81.395 | 129 | 24 | 0 | 1 | 129 | 1 | 129 | 4.97e-75 | 229 |
| MS.gene22111.t1 | MTR_4g103530 | 75.789 | 95 | 23 | 0 | 55 | 149 | 1 | 95 | 2.69e-50 | 167 |
| MS.gene22111.t1 | MTR_4g103530 | 46.875 | 64 | 34 | 0 | 251 | 314 | 119 | 182 | 1.18e-11 | 63.9 |
| MS.gene22111.t1 | MTR_7g011710 | 64.706 | 85 | 30 | 0 | 55 | 139 | 1 | 85 | 1.42e-34 | 125 |
| MS.gene22111.t1 | MTR_6g033215 | 31.928 | 166 | 111 | 1 | 36 | 199 | 129 | 294 | 1.73e-30 | 119 |
| MS.gene22111.t1 | MTR_0010s0370 | 35.227 | 176 | 106 | 3 | 8 | 177 | 4 | 177 | 6.82e-30 | 114 |
| MS.gene22111.t1 | MTR_0010s0350 | 35.227 | 176 | 106 | 3 | 8 | 177 | 4 | 177 | 6.82e-30 | 114 |
| MS.gene22111.t1 | MTR_8g463110 | 51.456 | 103 | 45 | 2 | 289 | 386 | 1 | 103 | 4.59e-16 | 80.5 |
| MS.gene22111.t1 | MTR_1g036720 | 36.111 | 108 | 67 | 1 | 7 | 112 | 3 | 110 | 1.25e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22111.t1 | AT2G17920 | 27.570 | 214 | 147 | 5 | 8 | 216 | 9 | 219 | 7.27e-19 | 86.7 |
| MS.gene22111.t1 | AT5G18636 | 25.234 | 321 | 210 | 10 | 8 | 314 | 9 | 313 | 3.27e-17 | 82.8 |
| MS.gene22111.t1 | AT5G25200 | 25.234 | 321 | 210 | 9 | 8 | 314 | 9 | 313 | 4.37e-17 | 82.4 |
| MS.gene22111.t1 | AT5G36228 | 28.351 | 194 | 133 | 4 | 36 | 226 | 39 | 229 | 5.46e-17 | 82.0 |
| MS.gene22111.t1 | AT2G41590 | 24.773 | 331 | 199 | 9 | 8 | 314 | 9 | 313 | 1.29e-16 | 80.9 |
| MS.gene22111.t1 | AT2G13450 | 28.169 | 213 | 145 | 5 | 8 | 215 | 9 | 218 | 1.30e-16 | 81.3 |
| MS.gene22111.t1 | AT2G02103 | 28.372 | 215 | 144 | 5 | 8 | 216 | 9 | 219 | 3.45e-16 | 80.1 |
| MS.gene22111.t1 | AT3G57587 | 27.442 | 215 | 146 | 5 | 8 | 216 | 9 | 219 | 1.08e-15 | 78.2 |
| MS.gene22111.t1 | AT3G31430 | 27.027 | 185 | 129 | 2 | 33 | 215 | 131 | 311 | 2.42e-14 | 73.9 |
| MS.gene22111.t1 | AT4G02000 | 30.370 | 135 | 90 | 2 | 84 | 216 | 7 | 139 | 5.48e-14 | 72.8 |
| MS.gene22111.t1 | AT3G47920 | 27.465 | 142 | 99 | 2 | 77 | 216 | 9 | 148 | 1.73e-12 | 68.2 |
Find 93 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATCTCATCACTGGAAAA+TGG | 0.212270 | 3.4:-43216179 | None:intergenic |
| GTTCTGATCCTTTGTGTAAC+AGG | 0.260697 | 3.4:-43215828 | None:intergenic |
| CTGATGATGGTGTCCGTAAT+TGG | 0.263976 | 3.4:+43215790 | MS.gene22111:CDS |
| AGACATACGCTCGCTGAAAT+AGG | 0.266771 | 3.4:-43215268 | None:intergenic |
| AGGTTCAAACTCTATGTTTA+GGG | 0.279075 | 3.4:-43215178 | None:intergenic |
| TGTTACAGGTGTGGATTAAT+AGG | 0.290591 | 3.4:+43215726 | MS.gene22111:CDS |
| TCTTAGCTAACATTGAGTTT+TGG | 0.298504 | 3.4:-43216040 | None:intergenic |
| CAAATTCATGGCATGCCCTT+TGG | 0.316248 | 3.4:+43215495 | MS.gene22111:CDS |
| TAGGTTCAAACTCTATGTTT+AGG | 0.321790 | 3.4:-43215179 | None:intergenic |
| TGCTACAAACCATTGGTTAC+AGG | 0.326406 | 3.4:+43215854 | MS.gene22111:CDS |
| GCGAGCGTATGTCTCGTTCT+TGG | 0.347233 | 3.4:+43215277 | MS.gene22111:CDS |
| CAGGGAATAGGAAGCTTCTT+AGG | 0.350999 | 3.4:+43215540 | MS.gene22111:CDS |
| AATTGTGTTTCGCTCATCAT+AGG | 0.352964 | 3.4:-43215574 | None:intergenic |
| CCTATTCCCTGACCTACTTT+CGG | 0.363892 | 3.4:-43215528 | None:intergenic |
| GTATCTCATCACTGGAAAAT+GGG | 0.364658 | 3.4:-43216178 | None:intergenic |
| CTGTTGTCTTCTTCTTTCAC+AGG | 0.367266 | 3.4:+43216098 | MS.gene22111:CDS |
| TTCTTCTTTCACAGGTGCTT+CGG | 0.368580 | 3.4:+43216106 | MS.gene22111:CDS |
| TCGCAAGGTGCTGCTCCTGC+TGG | 0.385324 | 3.4:+43215912 | MS.gene22111:CDS |
| GTCCTCAAACACTATTTGAT+TGG | 0.385362 | 3.4:+43215213 | MS.gene22111:CDS |
| TCAAGTCAGCTCCCCAATTA+CGG | 0.392301 | 3.4:-43215803 | None:intergenic |
| TTGATCGTGACCCGTTTGCC+TGG | 0.408031 | 3.4:-43215303 | None:intergenic |
| GTAGCTTTGTCGCGGCCAGC+AGG | 0.409477 | 3.4:-43215927 | None:intergenic |
| TGACGCTGCTCGTGTTCTTA+AGG | 0.411627 | 3.4:+43215371 | MS.gene22111:CDS |
| TGATGATGGTGTCCGTAATT+GGG | 0.419379 | 3.4:+43215791 | MS.gene22111:CDS |
| CCTACTAATCTCAACCTTGA+TGG | 0.429783 | 3.4:+43215129 | MS.gene22111:CDS |
| CTGAGTACCACTGTGCAGTT+TGG | 0.431760 | 3.4:-43216143 | None:intergenic |
| CCTTGATGGCTTGACCTTGT+CGG | 0.445121 | 3.4:+43215143 | MS.gene22111:CDS |
| CCGAAAGTAGGTCAGGGAAT+AGG | 0.445912 | 3.4:+43215528 | MS.gene22111:CDS |
| CCATCAAGGTTGAGATTAGT+AGG | 0.447368 | 3.4:-43215129 | None:intergenic |
| CATTTGCTGCTAAGGGGATG+TGG | 0.455935 | 3.4:+43216264 | MS.gene22111:CDS |
| TGGCTTGACCTTGTCGGAGG+AGG | 0.457093 | 3.4:+43215149 | MS.gene22111:CDS |
| CATTCAACCGAAAGTAGGTC+AGG | 0.463818 | 3.4:+43215521 | MS.gene22111:CDS |
| TGGAGAAACATTTGCTGCTA+AGG | 0.465042 | 3.4:+43216256 | MS.gene22111:CDS |
| AATGTTAGCTAAGAAAGGTA+AGG | 0.483689 | 3.4:+43216049 | MS.gene22111:CDS |
| TTCTTGGAAGCCAGGCAAAC+GGG | 0.485416 | 3.4:+43215293 | MS.gene22111:CDS |
| GACCAATCAAATAGTGTTTG+AGG | 0.485721 | 3.4:-43215215 | None:intergenic |
| GCTTCTAATTCGAACAGCTC+TGG | 0.490269 | 3.4:-43215768 | None:intergenic |
| GGAGAAACATTTGCTGCTAA+GGG | 0.497162 | 3.4:+43216257 | MS.gene22111:CDS |
| GGCTTGACCTTGTCGGAGGA+GGG | 0.501612 | 3.4:+43215150 | MS.gene22111:CDS |
| GTCATGGATCGAATCTCATA+TGG | 0.502242 | 3.4:+43215426 | MS.gene22111:CDS |
| AACTCAATGTTAGCTAAGAA+AGG | 0.503081 | 3.4:+43216044 | MS.gene22111:CDS |
| TTCCTCCTGTATCTCATCAC+TGG | 0.507460 | 3.4:-43216186 | None:intergenic |
| GTTCTTGGAAGCCAGGCAAA+CGG | 0.513517 | 3.4:+43215292 | MS.gene22111:CDS |
| TCACTGGAAAATGGGGCAGC+AGG | 0.520174 | 3.4:-43216170 | None:intergenic |
| ATGTCTCGTTCTTGGAAGCC+AGG | 0.520808 | 3.4:+43215285 | MS.gene22111:CDS |
| CAAATGTTTCTCCATTCTGA+AGG | 0.523478 | 3.4:-43216247 | None:intergenic |
| CCGACAAGGTCAAGCCATCA+AGG | 0.532980 | 3.4:-43215143 | None:intergenic |
| TTCGGTTGAATGAAGCCAAA+GGG | 0.533744 | 3.4:-43215510 | None:intergenic |
| TGCATGCTGGCCCTTCAGAA+TGG | 0.547597 | 3.4:+43216236 | MS.gene22111:CDS |
| GTTGAGATTAGTAGGATCCA+TGG | 0.551803 | 3.4:-43215121 | None:intergenic |
| GGCTTCATTCAACCGAAAGT+AGG | 0.554822 | 3.4:+43215516 | MS.gene22111:CDS |
| CGACAAAGCTACTGAAGGCG+TGG | 0.555953 | 3.4:+43215938 | MS.gene22111:CDS |
| CAGCTCTGGACACACCTTGT+CGG | 0.559268 | 3.4:-43215754 | None:intergenic |
| ATTTGCTGCTAAGGGGATGT+GGG | 0.574638 | 3.4:+43216265 | MS.gene22111:CDS |
| GAAGAAGAGGAAATGCATGC+TGG | 0.575119 | 3.4:+43216223 | MS.gene22111:CDS |
| ATGATTCAACGGAACAAAGG+TGG | 0.578205 | 3.4:-43215457 | None:intergenic |
| CGCCTTCAGTAGCTTTGTCG+CGG | 0.587989 | 3.4:-43215935 | None:intergenic |
| GCTGCTCGTGTTCTTAAGGA+AGG | 0.588282 | 3.4:+43215375 | MS.gene22111:CDS |
| TGGCGTGTCCATGCTAGTAA+TGG | 0.589116 | 3.4:+43215657 | MS.gene22111:CDS |
| GTGACTGAAAAGCAAGCATA+CGG | 0.597008 | 3.4:-43215983 | None:intergenic |
| CAAAAGAGCCATTACTAGCA+TGG | 0.597743 | 3.4:-43215665 | None:intergenic |
| GAACTGCTGCTACAAACCAT+TGG | 0.598614 | 3.4:+43215847 | MS.gene22111:CDS |
| TGAAAATTGTCATAAAGCCA+CGG | 0.600772 | 3.4:-43215399 | None:intergenic |
| GGCCGCGACAAAGCTACTGA+AGG | 0.601123 | 3.4:+43215933 | MS.gene22111:CDS |
| TGATGGCTTGACCTTGTCGG+AGG | 0.602108 | 3.4:+43215146 | MS.gene22111:CDS |
| ATGTTAGCTAAGAAAGGTAA+GGG | 0.602853 | 3.4:+43216050 | MS.gene22111:CDS |
| GATATGATTCAACGGAACAA+AGG | 0.609598 | 3.4:-43215460 | None:intergenic |
| GATGAGATACAGGAGGAAAG+TGG | 0.611508 | 3.4:+43216191 | MS.gene22111:CDS |
| TTTCGGTTGAATGAAGCCAA+AGG | 0.612101 | 3.4:-43215511 | None:intergenic |
| GATGATGGTGTCCGTAATTG+GGG | 0.613310 | 3.4:+43215792 | MS.gene22111:CDS |
| CCGCATCAAAATCATTCGCA+AGG | 0.614510 | 3.4:+43215897 | MS.gene22111:CDS |
| TTTGATGCGGTATAGAGGCA+GGG | 0.615823 | 3.4:-43215884 | None:intergenic |
| AAATGTTTCTCCATTCTGAA+GGG | 0.617079 | 3.4:-43216246 | None:intergenic |
| GGATAGGATCCTGTAACCAA+TGG | 0.617302 | 3.4:-43215863 | None:intergenic |
| TATCTCATCACTGGAAAATG+GGG | 0.617310 | 3.4:-43216177 | None:intergenic |
| TGCGGTATAGAGGCAGGGAT+AGG | 0.622349 | 3.4:-43215879 | None:intergenic |
| GTGGCTCGGATTTGAAGAAG+AGG | 0.626182 | 3.4:+43216210 | MS.gene22111:CDS |
| TTCGAATTAGAAGCTGATGA+TGG | 0.626456 | 3.4:+43215777 | MS.gene22111:CDS |
| GACAAAGCTACTGAAGGCGT+GGG | 0.628520 | 3.4:+43215939 | MS.gene22111:CDS |
| TGATTCAACGGAACAAAGGT+GGG | 0.634516 | 3.4:-43215456 | None:intergenic |
| GATACAGGAGGAAAGTGGCT+CGG | 0.636168 | 3.4:+43216196 | MS.gene22111:CDS |
| GGTTAAACCCTCCTCCGACA+AGG | 0.644622 | 3.4:-43215157 | None:intergenic |
| ATTCAACCGAAAGTAGGTCA+GGG | 0.645283 | 3.4:+43215522 | MS.gene22111:CDS |
| CACGAGCAGCGTCAGCTCTG+TGG | 0.648180 | 3.4:-43215362 | None:intergenic |
| TTCCAGTGATGAGATACAGG+AGG | 0.661067 | 3.4:+43216184 | MS.gene22111:CDS |
| GAGAAACATTTGCTGCTAAG+GGG | 0.661123 | 3.4:+43216258 | MS.gene22111:CDS |
| ACTGAATCTCACGATCAGCA+AGG | 0.672093 | 3.4:-43215242 | None:intergenic |
| GTGTTCTTAAGGAAGGTCCG+TGG | 0.685540 | 3.4:+43215382 | MS.gene22111:CDS |
| ACTTGAAACCTGTTACACAA+AGG | 0.688931 | 3.4:+43215820 | MS.gene22111:CDS |
| GGTGAAACTGAAACAAGTAA+CGG | 0.713468 | 3.4:-43215341 | None:intergenic |
| ATAGTGTTTGAGGACAACAA+CGG | 0.730180 | 3.4:-43215205 | None:intergenic |
| CTTGCTGCCAAACTGCACAG+TGG | 0.740573 | 3.4:+43216136 | MS.gene22111:CDS |
| ATTAATAGGACATACCGACA+AGG | 0.750307 | 3.4:+43215740 | MS.gene22111:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAAGTATGAGAGATT+GGG | + | chr3.4:43215696-43215715 | MS.gene22111:CDS | 20.0% |
| !!! | TAATTTTAAGTATGAGAGAT+TGG | + | chr3.4:43215695-43215714 | MS.gene22111:CDS | 20.0% |
| ! | CAAAAATCGATATGATTCAA+CGG | - | chr3.4:43215471-43215490 | None:intergenic | 25.0% |
| !! | TGACAATTTTCATATTGTCA+TGG | + | chr3.4:43215410-43215429 | MS.gene22111:CDS | 25.0% |
| !!! | GTTGAATCATATCGATTTTT+GGG | + | chr3.4:43215470-43215489 | MS.gene22111:CDS | 25.0% |
| AAATGTTTCTCCATTCTGAA+GGG | - | chr3.4:43216249-43216268 | None:intergenic | 30.0% | |
| AACTCAATGTTAGCTAAGAA+AGG | + | chr3.4:43216044-43216063 | MS.gene22111:CDS | 30.0% | |
| AATGTTAGCTAAGAAAGGTA+AGG | + | chr3.4:43216049-43216068 | MS.gene22111:CDS | 30.0% | |
| AGGTTCAAACTCTATGTTTA+GGG | - | chr3.4:43215181-43215200 | None:intergenic | 30.0% | |
| ATGTTAGCTAAGAAAGGTAA+GGG | + | chr3.4:43216050-43216069 | MS.gene22111:CDS | 30.0% | |
| TAGGTTCAAACTCTATGTTT+AGG | - | chr3.4:43215182-43215201 | None:intergenic | 30.0% | |
| TGAAAATTGTCATAAAGCCA+CGG | - | chr3.4:43215402-43215421 | None:intergenic | 30.0% | |
| ! | CTTAGCTAACATTGAGTTTT+GGG | - | chr3.4:43216042-43216061 | None:intergenic | 30.0% |
| ! | TCTTAGCTAACATTGAGTTT+TGG | - | chr3.4:43216043-43216062 | None:intergenic | 30.0% |
| !!! | CGTTGAATCATATCGATTTT+TGG | + | chr3.4:43215469-43215488 | MS.gene22111:CDS | 30.0% |
| !!! | GATTTTTGGGTTCAAATTCA+TGG | + | chr3.4:43215483-43215502 | MS.gene22111:CDS | 30.0% |
| AATTGTGTTTCGCTCATCAT+AGG | - | chr3.4:43215577-43215596 | None:intergenic | 35.0% | |
| ACTTGAAACCTGTTACACAA+AGG | + | chr3.4:43215820-43215839 | MS.gene22111:CDS | 35.0% | |
| ATAGTGTTTGAGGACAACAA+CGG | - | chr3.4:43215208-43215227 | None:intergenic | 35.0% | |
| ATTAATAGGACATACCGACA+AGG | + | chr3.4:43215740-43215759 | MS.gene22111:CDS | 35.0% | |
| CAAATGTTTCTCCATTCTGA+AGG | - | chr3.4:43216250-43216269 | None:intergenic | 35.0% | |
| GACCAATCAAATAGTGTTTG+AGG | - | chr3.4:43215218-43215237 | None:intergenic | 35.0% | |
| GATATGATTCAACGGAACAA+AGG | - | chr3.4:43215463-43215482 | None:intergenic | 35.0% | |
| GGTGAAACTGAAACAAGTAA+CGG | - | chr3.4:43215344-43215363 | None:intergenic | 35.0% | |
| GTATCTCATCACTGGAAAAT+GGG | - | chr3.4:43216181-43216200 | None:intergenic | 35.0% | |
| GTCCTCAAACACTATTTGAT+TGG | + | chr3.4:43215213-43215232 | MS.gene22111:CDS | 35.0% | |
| TATCTCATCACTGGAAAATG+GGG | - | chr3.4:43216180-43216199 | None:intergenic | 35.0% | |
| TGTATCTCATCACTGGAAAA+TGG | - | chr3.4:43216182-43216201 | None:intergenic | 35.0% | |
| TTCGAATTAGAAGCTGATGA+TGG | + | chr3.4:43215777-43215796 | MS.gene22111:CDS | 35.0% | |
| ! | ATTTTCCAGTGATGAGATAC+AGG | + | chr3.4:43216181-43216200 | MS.gene22111:CDS | 35.0% |
| ! | GATTGGGTGTTTTATGTTAC+AGG | + | chr3.4:43215712-43215731 | MS.gene22111:CDS | 35.0% |
| ! | TGTTACAGGTGTGGATTAAT+AGG | + | chr3.4:43215726-43215745 | MS.gene22111:CDS | 35.0% |
| !! | ATGATTTTGATGCGGTATAG+AGG | - | chr3.4:43215892-43215911 | None:intergenic | 35.0% |
| !!! | CCATTCTTTTTTCAGTGGTA+CGG | - | chr3.4:43215640-43215659 | None:intergenic | 35.0% |
| ATGATTCAACGGAACAAAGG+TGG | - | chr3.4:43215460-43215479 | None:intergenic | 40.0% | |
| ATTCAACCGAAAGTAGGTCA+GGG | + | chr3.4:43215522-43215541 | MS.gene22111:CDS | 40.0% | |
| CAAAAGAGCCATTACTAGCA+TGG | - | chr3.4:43215668-43215687 | None:intergenic | 40.0% | |
| CCATCAAGGTTGAGATTAGT+AGG | - | chr3.4:43215132-43215151 | None:intergenic | 40.0% | |
| CCGTACCACTGAAAAAAGAA+TGG | + | chr3.4:43215637-43215656 | MS.gene22111:CDS | 40.0% | |
| CCTACTAATCTCAACCTTGA+TGG | + | chr3.4:43215129-43215148 | MS.gene22111:CDS | 40.0% | |
| CTGTTGTCTTCTTCTTTCAC+AGG | + | chr3.4:43216098-43216117 | MS.gene22111:CDS | 40.0% | |
| GTCATGGATCGAATCTCATA+TGG | + | chr3.4:43215426-43215445 | MS.gene22111:CDS | 40.0% | |
| GTGACTGAAAAGCAAGCATA+CGG | - | chr3.4:43215986-43216005 | None:intergenic | 40.0% | |
| GTTCTGATCCTTTGTGTAAC+AGG | - | chr3.4:43215831-43215850 | None:intergenic | 40.0% | |
| TGATTCAACGGAACAAAGGT+GGG | - | chr3.4:43215459-43215478 | None:intergenic | 40.0% | |
| TTCGGTTGAATGAAGCCAAA+GGG | - | chr3.4:43215513-43215532 | None:intergenic | 40.0% | |
| TTCTTCTTTCACAGGTGCTT+CGG | + | chr3.4:43216106-43216125 | MS.gene22111:CDS | 40.0% | |
| TTTCGGTTGAATGAAGCCAA+AGG | - | chr3.4:43215514-43215533 | None:intergenic | 40.0% | |
| ! | GAGAAACATTTGCTGCTAAG+GGG | + | chr3.4:43216258-43216277 | MS.gene22111:CDS | 40.0% |
| ! | GGAGAAACATTTGCTGCTAA+GGG | + | chr3.4:43216257-43216276 | MS.gene22111:CDS | 40.0% |
| ! | GGTGTTTTATGTTACAGGTG+TGG | + | chr3.4:43215717-43215736 | MS.gene22111:CDS | 40.0% |
| ! | TGCTACAAACCATTGGTTAC+AGG | + | chr3.4:43215854-43215873 | MS.gene22111:CDS | 40.0% |
| ! | TGGAGAAACATTTGCTGCTA+AGG | + | chr3.4:43216256-43216275 | MS.gene22111:CDS | 40.0% |
| ! | TTGAGGACAACAACGGTTTT+AGG | - | chr3.4:43215201-43215220 | None:intergenic | 40.0% |
| !! | CCTTGCGAATGATTTTGATG+CGG | - | chr3.4:43215900-43215919 | None:intergenic | 40.0% |
| !! | TGATGATGGTGTCCGTAATT+GGG | + | chr3.4:43215791-43215810 | MS.gene22111:CDS | 40.0% |
| !!! | ACACGCCATTCTTTTTTCAG+TGG | - | chr3.4:43215645-43215664 | None:intergenic | 40.0% |
| ACTGAATCTCACGATCAGCA+AGG | - | chr3.4:43215245-43215264 | None:intergenic | 45.0% | |
| AGACATACGCTCGCTGAAAT+AGG | - | chr3.4:43215271-43215290 | None:intergenic | 45.0% | |
| CAAATTCATGGCATGCCCTT+TGG | + | chr3.4:43215495-43215514 | MS.gene22111:CDS | 45.0% | |
| CAGGGAATAGGAAGCTTCTT+AGG | + | chr3.4:43215540-43215559 | MS.gene22111:CDS | 45.0% | |
| CATTCAACCGAAAGTAGGTC+AGG | + | chr3.4:43215521-43215540 | MS.gene22111:CDS | 45.0% | |
| CCGCATCAAAATCATTCGCA+AGG | + | chr3.4:43215897-43215916 | MS.gene22111:CDS | 45.0% | |
| CCTATTCCCTGACCTACTTT+CGG | - | chr3.4:43215531-43215550 | None:intergenic | 45.0% | |
| GAACTGCTGCTACAAACCAT+TGG | + | chr3.4:43215847-43215866 | MS.gene22111:CDS | 45.0% | |
| GAAGAAGAGGAAATGCATGC+TGG | + | chr3.4:43216223-43216242 | MS.gene22111:CDS | 45.0% | |
| GATGAGATACAGGAGGAAAG+TGG | + | chr3.4:43216191-43216210 | MS.gene22111:CDS | 45.0% | |
| GCTTCTAATTCGAACAGCTC+TGG | - | chr3.4:43215771-43215790 | None:intergenic | 45.0% | |
| GGATAGGATCCTGTAACCAA+TGG | - | chr3.4:43215866-43215885 | None:intergenic | 45.0% | |
| GGCTTCATTCAACCGAAAGT+AGG | + | chr3.4:43215516-43215535 | MS.gene22111:CDS | 45.0% | |
| TCAAGTCAGCTCCCCAATTA+CGG | - | chr3.4:43215806-43215825 | None:intergenic | 45.0% | |
| TTCCAGTGATGAGATACAGG+AGG | + | chr3.4:43216184-43216203 | MS.gene22111:CDS | 45.0% | |
| TTCCTCCTGTATCTCATCAC+TGG | - | chr3.4:43216189-43216208 | None:intergenic | 45.0% | |
| TTTGATGCGGTATAGAGGCA+GGG | - | chr3.4:43215887-43215906 | None:intergenic | 45.0% | |
| ! | ATTTGCTGCTAAGGGGATGT+GGG | + | chr3.4:43216265-43216284 | MS.gene22111:CDS | 45.0% |
| ! | GATGATGGTGTCCGTAATTG+GGG | + | chr3.4:43215792-43215811 | MS.gene22111:CDS | 45.0% |
| ! | TTTTGATGCGGTATAGAGGC+AGG | - | chr3.4:43215888-43215907 | None:intergenic | 45.0% |
| !! | CTGATGATGGTGTCCGTAAT+TGG | + | chr3.4:43215790-43215809 | MS.gene22111:CDS | 45.0% |
| ATGTCTCGTTCTTGGAAGCC+AGG | + | chr3.4:43215285-43215304 | MS.gene22111:CDS | 50.0% | |
| CCGAAAGTAGGTCAGGGAAT+AGG | + | chr3.4:43215528-43215547 | MS.gene22111:CDS | 50.0% | |
| CTGAGTACCACTGTGCAGTT+TGG | - | chr3.4:43216146-43216165 | None:intergenic | 50.0% | |
| GATACAGGAGGAAAGTGGCT+CGG | + | chr3.4:43216196-43216215 | MS.gene22111:CDS | 50.0% | |
| GCTGCTCGTGTTCTTAAGGA+AGG | + | chr3.4:43215375-43215394 | MS.gene22111:CDS | 50.0% | |
| GTGTTCTTAAGGAAGGTCCG+TGG | + | chr3.4:43215382-43215401 | MS.gene22111:CDS | 50.0% | |
| GTTCTTGGAAGCCAGGCAAA+CGG | + | chr3.4:43215292-43215311 | MS.gene22111:CDS | 50.0% | |
| TGACGCTGCTCGTGTTCTTA+AGG | + | chr3.4:43215371-43215390 | MS.gene22111:CDS | 50.0% | |
| TGGCGTGTCCATGCTAGTAA+TGG | + | chr3.4:43215657-43215676 | MS.gene22111:CDS | 50.0% | |
| TTCTTGGAAGCCAGGCAAAC+GGG | + | chr3.4:43215293-43215312 | MS.gene22111:CDS | 50.0% | |
| ! | CATTTGCTGCTAAGGGGATG+TGG | + | chr3.4:43216264-43216283 | MS.gene22111:CDS | 50.0% |
| ! | CCTTGATGGCTTGACCTTGT+CGG | + | chr3.4:43215143-43215162 | MS.gene22111:CDS | 50.0% |
| ! | GACAAAGCTACTGAAGGCGT+GGG | + | chr3.4:43215939-43215958 | MS.gene22111:CDS | 50.0% |
| ! | GTGGCTCGGATTTGAAGAAG+AGG | + | chr3.4:43216210-43216229 | MS.gene22111:CDS | 50.0% |
| CCGACAAGGTCAAGCCATCA+AGG | - | chr3.4:43215146-43215165 | None:intergenic | 55.0% | |
| CGACAAAGCTACTGAAGGCG+TGG | + | chr3.4:43215938-43215957 | MS.gene22111:CDS | 55.0% | |
| CTTGCTGCCAAACTGCACAG+TGG | + | chr3.4:43216136-43216155 | MS.gene22111:CDS | 55.0% | |
| GCGAGCGTATGTCTCGTTCT+TGG | + | chr3.4:43215277-43215296 | MS.gene22111:CDS | 55.0% | |
| GGTTAAACCCTCCTCCGACA+AGG | - | chr3.4:43215160-43215179 | None:intergenic | 55.0% | |
| TCACTGGAAAATGGGGCAGC+AGG | - | chr3.4:43216173-43216192 | None:intergenic | 55.0% | |
| TGATGGCTTGACCTTGTCGG+AGG | + | chr3.4:43215146-43215165 | MS.gene22111:CDS | 55.0% | |
| TGCATGCTGGCCCTTCAGAA+TGG | + | chr3.4:43216236-43216255 | MS.gene22111:CDS | 55.0% | |
| TGCGGTATAGAGGCAGGGAT+AGG | - | chr3.4:43215882-43215901 | None:intergenic | 55.0% | |
| TTGATCGTGACCCGTTTGCC+TGG | - | chr3.4:43215306-43215325 | None:intergenic | 55.0% | |
| !! | CAGCTCTGGACACACCTTGT+CGG | - | chr3.4:43215757-43215776 | None:intergenic | 55.0% |
| !! | CGCCTTCAGTAGCTTTGTCG+CGG | - | chr3.4:43215938-43215957 | None:intergenic | 55.0% |
| GGCCGCGACAAAGCTACTGA+AGG | + | chr3.4:43215933-43215952 | MS.gene22111:CDS | 60.0% | |
| GGCTTGACCTTGTCGGAGGA+GGG | + | chr3.4:43215150-43215169 | MS.gene22111:CDS | 60.0% | |
| TGGCTTGACCTTGTCGGAGG+AGG | + | chr3.4:43215149-43215168 | MS.gene22111:CDS | 60.0% | |
| CACGAGCAGCGTCAGCTCTG+TGG | - | chr3.4:43215365-43215384 | None:intergenic | 65.0% | |
| !! | GTAGCTTTGTCGCGGCCAGC+AGG | - | chr3.4:43215930-43215949 | None:intergenic | 65.0% |
| !! | TCGCAAGGTGCTGCTCCTGC+TGG | + | chr3.4:43215912-43215931 | MS.gene22111:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 43215123 | 43216298 | 43215123 | ID=MS.gene22111 |
| chr3.4 | mRNA | 43215123 | 43216298 | 43215123 | ID=MS.gene22111.t1;Parent=MS.gene22111 |
| chr3.4 | exon | 43215123 | 43216298 | 43215123 | ID=MS.gene22111.t1.exon1;Parent=MS.gene22111.t1 |
| chr3.4 | CDS | 43215123 | 43216298 | 43215123 | ID=cds.MS.gene22111.t1;Parent=MS.gene22111.t1 |
| Gene Sequence |
| Protein sequence |
