AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34812


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34812.t1 MTR_6g053230 45.167 538 213 5 1 538 22 477 6.32e-136 403
MS.gene34812.t1 MTR_3g024240 65.289 121 38 2 80 197 55 174 3.59e-47 163
MS.gene34812.t1 MTR_6g033215 37.755 196 119 1 2 197 102 294 1.20e-46 165
MS.gene34812.t1 MTR_0010s0370 37.662 154 96 0 22 175 24 177 6.07e-31 119
MS.gene34812.t1 MTR_0010s0350 37.662 154 96 0 22 175 24 177 6.07e-31 119
MS.gene34812.t1 MTR_3g053920 33.775 151 83 2 19 169 23 156 1.35e-23 101
MS.gene34812.t1 MTR_2g061500 37.037 108 68 0 20 127 24 131 3.54e-22 93.2
MS.gene34812.t1 MTR_4g020545 28.571 210 98 4 61 270 81 238 7.76e-20 90.5
MS.gene34812.t1 MTR_8g468010 56.667 60 26 0 117 176 5 64 4.01e-19 84.3
MS.gene34812.t1 MTR_4g103530 39.326 89 54 0 55 143 5 93 2.50e-16 77.8
MS.gene34812.t1 MTR_1g032270 40.541 74 44 0 96 169 1 74 2.14e-14 70.9
MS.gene34812.t1 MTR_1g036720 41.429 70 41 0 30 99 32 101 2.47e-14 69.7
MS.gene34812.t1 MTR_6g053790 31.298 131 67 3 134 263 35 143 4.39e-13 70.9
MS.gene34812.t1 MTR_7g106180 27.465 142 102 1 32 173 26 166 5.36e-12 66.2
MS.gene34812.t1 MTR_7g011710 30.275 109 73 2 55 161 5 112 2.83e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34812.t1 AT3G31430 31.928 166 103 6 51 213 153 311 1.42e-13 72.4
MS.gene34812.t1 AT3G57587 25.714 175 116 5 51 219 58 224 2.04e-13 72.4
MS.gene34812.t1 AT2G02103 25.309 162 111 2 73 226 80 239 1.57e-12 70.1
MS.gene34812.t1 AT5G25200 24.540 163 113 2 72 226 79 239 1.74e-12 69.3
MS.gene34812.t1 AT2G41590 26.667 150 104 3 72 219 79 224 3.17e-12 68.6
MS.gene34812.t1 AT5G18636 24.138 145 108 1 72 216 79 221 1.24e-11 67.0
MS.gene34812.t1 AT2G17920 23.196 194 147 1 30 223 37 228 2.30e-11 65.5

Find 161 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCCTTCCCTTATGATTAA+AGG 0.129114 7.1:+54377871 None:intergenic
TTGCTATATCTGCGGGCTAT+TGG 0.197696 7.1:-54378613 MS.gene34812:CDS
TGCTATATCTGCGGGCTATT+GGG 0.272574 7.1:-54378612 MS.gene34812:CDS
ATCAATCTGGCGTCCTGGTC+AGG 0.286734 7.1:-54379054 MS.gene34812:CDS
TCGTTGATGGTGTCCAAGGC+TGG 0.292032 7.1:-54378548 MS.gene34812:CDS
ATTCTACCATGAATGGGATT+TGG 0.314187 7.1:-54378988 MS.gene34812:CDS
TCAAGTGAGCATACGCTGTT+TGG 0.315623 7.1:-54378345 MS.gene34812:CDS
TTGGAAAGAGTTCTTCAAAA+TGG 0.319506 7.1:-54378969 MS.gene34812:CDS
TATGATGAAAGTAATTATTA+TGG 0.322911 7.1:-54378768 MS.gene34812:CDS
AATCCCATTCATGGTAGAAT+TGG 0.331082 7.1:+54378991 None:intergenic
CAGAAAATAAAGGATTAGTT+TGG 0.332197 7.1:+54377626 None:intergenic
TTTGTCTCCTGCTCAACATT+TGG 0.332835 7.1:+54377745 None:intergenic
CTTTCAACGAAGCTGAAGTC+TGG 0.337203 7.1:-54378875 MS.gene34812:CDS
GGTGGTTCCGATGGTCTTAA+TGG 0.344331 7.1:-54378417 MS.gene34812:CDS
CTCTTTCCAAATCCCATTCA+TGG 0.346917 7.1:+54378982 None:intergenic
ATTTCCAATTCTACCATGAA+TGG 0.355771 7.1:-54378995 MS.gene34812:CDS
TTTGTGGAATTTAATTCAAA+AGG 0.356644 7.1:+54378228 None:intergenic
TTGCGGGTCCTTTAATCATA+AGG 0.367817 7.1:-54377879 MS.gene34812:CDS
ACCTGTCCGATTTCAATTCA+TGG 0.368482 7.1:-54379090 MS.gene34812:CDS
ATGAGGTTGGTGAATGGAAT+GGG 0.372127 7.1:-54378183 MS.gene34812:CDS
ATGCTTCTTGGATGTCATAT+TGG 0.381288 7.1:-54378804 MS.gene34812:CDS
CCTTCAAGACCAATCATTGC+GGG 0.384639 7.1:-54377895 MS.gene34812:CDS
CTTGAACCAGGATTCGTTGA+TGG 0.392405 7.1:-54378561 MS.gene34812:CDS
CCTTTCCCTTTGTCATCACT+TGG 0.396709 7.1:+54377814 None:intergenic
TAATAGTAATGTGGTTGTTA+TGG 0.399029 7.1:-54378373 MS.gene34812:CDS
TTGCTTGAGCTTTGCGTTGT+GGG 0.415231 7.1:-54379131 MS.gene34812:CDS
CAGAGTGAGGTGCTGCTGAC+AGG 0.421342 7.1:-54378096 MS.gene34812:CDS
AGGATGGTTACGAACTTCAT+TGG 0.427501 7.1:-54378282 MS.gene34812:CDS
TGACAAAGGGAAAGGTAAAA+TGG 0.427852 7.1:-54377806 MS.gene34812:CDS
TCTCCAAATGGATCCTCTAC+TGG 0.430669 7.1:-54379179 MS.gene34812:CDS
TCGTTTAAGTACGAAAGAAT+TGG 0.431256 7.1:-54378642 MS.gene34812:CDS
CATAATCCTCATCAGCAATC+AGG 0.431907 7.1:-54378072 MS.gene34812:CDS
ACGAACTTCATTGGTCAAAC+TGG 0.432288 7.1:-54378273 MS.gene34812:CDS
ATTCATGGTAGAATTGGAAA+TGG 0.435101 7.1:+54378997 None:intergenic
ATTCATGTGGGAACAAATGC+TGG 0.438746 7.1:-54378126 MS.gene34812:CDS
TGACCAGGACGCCAGATTGA+TGG 0.439149 7.1:+54379056 None:intergenic
CGAAGCTGAAGTCTGGGTTC+AGG 0.443582 7.1:-54378868 MS.gene34812:CDS
ATTAAAGGACCCGCAATGAT+TGG 0.445791 7.1:+54377886 None:intergenic
TCTCCTCCATGAATTGAAAT+CGG 0.449098 7.1:+54379084 None:intergenic
CGTTGATGGTGTCCAAGGCT+GGG 0.450257 7.1:-54378547 MS.gene34812:CDS
GAGTATGTAGGCATGCTTCT+TGG 0.450788 7.1:-54378816 MS.gene34812:CDS
AATCTGATTAGCTATGTTTG+TGG 0.453740 7.1:+54378212 None:intergenic
CCCGCAATGATTGGTCTTGA+AGG 0.456526 7.1:+54377895 None:intergenic
AGTTAGCACAAAAGCATCAT+TGG 0.456599 7.1:+54378047 None:intergenic
TCACCCAAGCTGGTGAAAAC+AGG 0.465715 7.1:-54379022 MS.gene34812:CDS
CAAGTGAGCATACGCTGTTT+GGG 0.465924 7.1:-54378344 MS.gene34812:CDS
AATAATAATGTTGGTACGCT+GGG 0.471269 7.1:-54377973 MS.gene34812:CDS
GTTGATGGTGTCCAAGGCTG+GGG 0.471672 7.1:-54378546 MS.gene34812:CDS
AACATCAACGACTCTCCAAA+TGG 0.471784 7.1:-54379191 MS.gene34812:CDS
TTTCCAATTCTACCATGAAT+GGG 0.472701 7.1:-54378994 MS.gene34812:CDS
AATGAGGTTGGTGAATGGAA+TGG 0.474578 7.1:-54378184 MS.gene34812:CDS
CTTCCATCAATCTGGCGTCC+TGG 0.475644 7.1:-54379059 MS.gene34812:CDS
TTGTGGAATTTAATTCAAAA+GGG 0.478866 7.1:+54378229 None:intergenic
TGCGGGTCCTTTAATCATAA+GGG 0.483166 7.1:-54377878 MS.gene34812:CDS
GACCCAGTAGAGGATCCATT+TGG 0.484757 7.1:+54379176 None:intergenic
AGGAAATGCAGGAGATGGCT+TGG 0.485285 7.1:-54377668 MS.gene34812:CDS
AGTCAGACCAAATGTTGAGC+AGG 0.492313 7.1:-54377752 MS.gene34812:CDS
AGGAGAGACTTCCATCAATC+TGG 0.492557 7.1:-54379067 MS.gene34812:CDS
CAGCCGATTCTGAGCATCTG+TGG 0.495421 7.1:-54378003 MS.gene34812:CDS
GTCCCACAGATGCTCAGAAT+CGG 0.495865 7.1:+54378000 None:intergenic
GCGCGTGGAGGTCGTAATGC+TGG 0.496370 7.1:-54378444 MS.gene34812:CDS
AACATTGACACAGGAAATGC+AGG 0.497444 7.1:-54377679 MS.gene34812:CDS
AACTGGATGTAATCAAAGGT+TGG 0.500234 7.1:-54378028 MS.gene34812:CDS
ACTGGATGTAATCAAAGGTT+GGG 0.501627 7.1:-54378027 MS.gene34812:CDS
GGAAATGCAGGAGATGGCTT+GGG 0.508184 7.1:-54377667 MS.gene34812:CDS
CTGGGAGAGACATCAGAGGC+AGG 0.509730 7.1:-54377955 MS.gene34812:CDS
CTCCAAATGGATCCTCTACT+GGG 0.512789 7.1:-54379178 MS.gene34812:CDS
TTCATTGGTCAAACTGGAGG+AGG 0.513129 7.1:-54378267 MS.gene34812:CDS
TCAATCTGGCGTCCTGGTCA+GGG 0.514431 7.1:-54379053 MS.gene34812:CDS
ATTCTGAGCATCTGTGGGAC+TGG 0.516437 7.1:-54377997 MS.gene34812:CDS
AAATAATAATGTTGGTACGC+TGG 0.517674 7.1:-54377974 MS.gene34812:CDS
CAGGAGACAAATAACAATGC+TGG 0.521330 7.1:-54377733 MS.gene34812:CDS
GAGTTCTTCAAAATGGTCCC+TGG 0.521753 7.1:-54378962 MS.gene34812:CDS
TGGACACCATCAACGAATCC+TGG 0.526553 7.1:+54378555 None:intergenic
AATGCTGGAGGGAGAACTGT+GGG 0.526678 7.1:-54378513 MS.gene34812:CDS
TCAGATTACTATAATGAGGT+TGG 0.530450 7.1:-54378196 MS.gene34812:CDS
ATTGGTCAAACTGGAGGAGG+GGG 0.533927 7.1:-54378264 MS.gene34812:CDS
GTCAATAAGTGGCTCAGAGG+TGG 0.534863 7.1:-54378477 MS.gene34812:CDS
GCTGGTCGAGGTGGTTCCGA+TGG 0.537680 7.1:-54378426 MS.gene34812:CDS
CAGGTCTTTAATCTGCCACA+TGG 0.537747 7.1:-54378849 MS.gene34812:CDS
ATTTACCAAGTGATGACAAA+GGG 0.538835 7.1:-54377819 MS.gene34812:CDS
CACAGATGCTCAGAATCGGC+TGG 0.539072 7.1:+54378004 None:intergenic
ACTATAATGAGGTTGGTGAA+TGG 0.540236 7.1:-54378189 MS.gene34812:CDS
GACATCAGAGGCAGGGCGCG+TGG 0.541393 7.1:-54377947 MS.gene34812:CDS
ATGGTCTTTGAGAAAGAAGA+TGG 0.542271 7.1:-54378681 MS.gene34812:CDS
AATGTGGTCAATTCTGATGC+AGG 0.543488 7.1:-54377847 MS.gene34812:CDS
GTGGCTCAGAGGTGGAAGAA+TGG 0.544414 7.1:-54378469 MS.gene34812:CDS
TCCTTTAATCATAAGGGAAG+GGG 0.547215 7.1:-54377872 MS.gene34812:CDS
TCCATGAATTGAAATCGGAC+AGG 0.550535 7.1:+54379089 None:intergenic
TTTCAACGAAGCTGAAGTCT+GGG 0.553299 7.1:-54378874 MS.gene34812:CDS
AAAGTAATTATTATGGCCCA+TGG 0.554347 7.1:-54378761 MS.gene34812:CDS
AGAGTGAGGTGCTGCTGACA+GGG 0.555775 7.1:-54378095 MS.gene34812:CDS
AACAATGGAGGTAGTAATGT+GGG 0.558282 7.1:-54378156 MS.gene34812:CDS
CTAATCAGATTACTATAATG+AGG 0.559518 7.1:-54378200 MS.gene34812:CDS
CATTGGTCAAACTGGAGGAG+GGG 0.564143 7.1:-54378265 MS.gene34812:CDS
AGCCGATTCTGAGCATCTGT+GGG 0.564310 7.1:-54378002 MS.gene34812:CDS
TGGTGAAGCTATTTCTGAGG+TGG 0.565205 7.1:-54378898 MS.gene34812:CDS
GGAGGTCGTAATGCTGGTCG+AGG 0.565263 7.1:-54378438 MS.gene34812:CDS
ATTGCTTGAGCTTTGCGTTG+TGG 0.566776 7.1:-54379132 MS.gene34812:CDS
GGTCAATTCTGATGCAGGAA+AGG 0.568223 7.1:-54377842 MS.gene34812:CDS
GTCCTTTAATCATAAGGGAA+GGG 0.568342 7.1:-54377873 MS.gene34812:CDS
TTGGTACCTGATTGCTGATG+AGG 0.568991 7.1:+54378066 None:intergenic
AATGCAGGAGATGGCTTGGG+AGG 0.569358 7.1:-54377664 MS.gene34812:CDS
TGTGCTAAAAGGCTTGAACC+AGG 0.571957 7.1:-54378573 MS.gene34812:CDS
TGCTGGAGGGAGAACTGTGG+GGG 0.571970 7.1:-54378511 MS.gene34812:CDS
GAAATGTCACTGTCAATAAG+TGG 0.573637 7.1:-54378488 MS.gene34812:CDS
CATAAGGGAAGGGGCTAATG+TGG 0.574466 7.1:-54377863 MS.gene34812:CDS
GGATTCGTTGATGGTGTCCA+AGG 0.575967 7.1:-54378552 MS.gene34812:CDS
AATGGAATGGGGTCTAACAA+TGG 0.577339 7.1:-54378171 MS.gene34812:CDS
GACACAGGAAATGCAGGAGA+TGG 0.577570 7.1:-54377673 MS.gene34812:CDS
ATGCGCATATACATTCTCCA+TGG 0.577660 7.1:+54378744 None:intergenic
TAACAATGGAGGTAGTAATG+TGG 0.579247 7.1:-54378157 MS.gene34812:CDS
GGTGTTACAATCACCCAAGC+TGG 0.580839 7.1:-54379032 MS.gene34812:CDS
TCATTGGTCAAACTGGAGGA+GGG 0.583089 7.1:-54378266 MS.gene34812:CDS
CCAAGTGATGACAAAGGGAA+AGG 0.586386 7.1:-54377814 MS.gene34812:CDS
GGGTATATGAATGAGTATGT+AGG 0.587197 7.1:-54378828 MS.gene34812:CDS
ATTAAGACCATTAAGACCAT+CGG 0.588341 7.1:+54378410 None:intergenic
GTACGAGTCCTACGTGGTGG+AGG 0.588427 7.1:-54378318 MS.gene34812:CDS
AATGTATATGCGCATTCGTG+TGG 0.589383 7.1:-54378736 MS.gene34812:CDS
GGTGGAAGAATGGCAGCGCG+TGG 0.589856 7.1:-54378459 MS.gene34812:CDS
TGCGCATATACATTCTCCAT+GGG 0.591714 7.1:+54378745 None:intergenic
TGGGAGAGACATCAGAGGCA+GGG 0.600479 7.1:-54377954 MS.gene34812:CDS
TTCATGTGGGAACAAATGCT+GGG 0.601117 7.1:-54378125 MS.gene34812:CDS
GTGATTGTAACACCCTGACC+AGG 0.602165 7.1:+54379041 None:intergenic
AAGACCATGCTCCTCTTCAG+AGG 0.606011 7.1:+54378696 None:intergenic
GGTCCTTTAATCATAAGGGA+AGG 0.609221 7.1:-54377874 MS.gene34812:CDS
TGCTGGGAGTCAACAGAGTG+AGG 0.611143 7.1:-54378109 MS.gene34812:CDS
GGAAAGGTAAAATGGACGAT+GGG 0.624495 7.1:-54377798 MS.gene34812:CDS
CAGTTCAGATGACCCAGTAG+AGG 0.625147 7.1:+54379166 None:intergenic
GGGAGATTCTTAAATGCTGG+AGG 0.628940 7.1:-54378525 MS.gene34812:CDS
TGCTAACTGGATGTAATCAA+AGG 0.629561 7.1:-54378032 MS.gene34812:CDS
GCCTTCAAGACCAATCATTG+CGG 0.631393 7.1:-54377896 MS.gene34812:CDS
TGAACCTCTGAAGAGGAGCA+TGG 0.634050 7.1:-54378700 MS.gene34812:CDS
GGTCGTAATGCTGGTCGAGG+TGG 0.634414 7.1:-54378435 MS.gene34812:CDS
AGGTCTTTAATCTGCCACAT+GGG 0.634617 7.1:-54378848 MS.gene34812:CDS
ATATTGCTGAACCTCTGAAG+AGG 0.634718 7.1:-54378707 MS.gene34812:CDS
AACTTCATTGGTCAAACTGG+AGG 0.635797 7.1:-54378270 MS.gene34812:CDS
GGAAGAATGGCAGCGCGTGG+AGG 0.635935 7.1:-54378456 MS.gene34812:CDS
GGGACTGGAAATAATAATGT+TGG 0.636868 7.1:-54377982 MS.gene34812:CDS
TGAGGTTGGTGAATGGAATG+GGG 0.637750 7.1:-54378182 MS.gene34812:CDS
TTGATGGTGTCCAAGGCTGG+GGG 0.640106 7.1:-54378545 MS.gene34812:CDS
GGGAAAGGTAAAATGGACGA+TGG 0.640770 7.1:-54377799 MS.gene34812:CDS
GAATGAGAATAATAGTAATG+TGG 0.641457 7.1:-54378382 MS.gene34812:CDS
AATTGGTGAAGCTATTTCTG+AGG 0.645727 7.1:-54378901 MS.gene34812:CDS
AAATGCTGGAGGGAGAACTG+TGG 0.646829 7.1:-54378514 MS.gene34812:CDS
ACTGTCAATAAGTGGCTCAG+AGG 0.654912 7.1:-54378480 MS.gene34812:CDS
ATGCTGGAGGGAGAACTGTG+GGG 0.658418 7.1:-54378512 MS.gene34812:CDS
GATTTACCAAGTGATGACAA+AGG 0.658596 7.1:-54377820 MS.gene34812:CDS
GCTGGAGGGAGAACTGTGGG+GGG 0.666204 7.1:-54378510 MS.gene34812:CDS
TGTGGGTGCTGACATTCATG+TGG 0.668217 7.1:-54378139 MS.gene34812:CDS
GGAGATTCTTAAATGCTGGA+GGG 0.674388 7.1:-54378524 MS.gene34812:CDS
CGTGTACGAGTCCTACGTGG+TGG 0.678916 7.1:-54378321 MS.gene34812:CDS
GGAATGGGGTCTAACAATGG+AGG 0.680286 7.1:-54378168 MS.gene34812:CDS
AAGTAAAACCTCCACCACGT+AGG 0.699935 7.1:+54378310 None:intergenic
AAGTGCTAATGAGCAAGTTG+TGG 0.704228 7.1:-54377710 MS.gene34812:CDS
GTGGGTGCTGACATTCATGT+GGG 0.712535 7.1:-54378138 MS.gene34812:CDS
TACTCATTCATATACCCATG+TGG 0.713978 7.1:+54378834 None:intergenic
TGTCCGATTTCAATTCATGG+AGG 0.736135 7.1:-54379087 MS.gene34812:CDS
GTGCAGATGAACATTGACAC+AGG 0.741639 7.1:-54377688 MS.gene34812:CDS
GGGCGTGTACGAGTCCTACG+TGG 0.752444 7.1:-54378324 MS.gene34812:CDS
TACGCTGGGAGAGACATCAG+AGG 0.758802 7.1:-54377959 MS.gene34812:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATGAAAGTAATTATTA+TGG - chr7.1:54377137-54377156 MS.gene34812:intron 15.0%
!! GAAATATTAGATGTAAGTAA+AGG - chr7.1:54378618-54378637 MS.gene34812:CDS 20.0%
!! TTGTGGAATTTAATTCAAAA+GGG + chr7.1:54377679-54377698 None:intergenic 20.0%
!! TTTGTGGAATTTAATTCAAA+AGG + chr7.1:54377680-54377699 None:intergenic 20.0%
!!! AATTCAAGTTTATCAACAAT+AGG + chr7.1:54379161-54379180 None:intergenic 20.0%
!!! ACAATGTTTTCAGAAAATAA+AGG + chr7.1:54378292-54378311 None:intergenic 20.0%
!!! ATTCAAGTTTATCAACAATA+GGG + chr7.1:54379160-54379179 None:intergenic 20.0%
!!! ATTTTCTGAAAACATTGTAA+TGG - chr7.1:54378294-54378313 MS.gene34812:CDS 20.0%
!!! TTAACAAAACTTTTAAAGTC+TGG + chr7.1:54379110-54379129 None:intergenic 20.0%
! AAATCATTAGTTGGAATTGT+AGG - chr7.1:54378352-54378371 MS.gene34812:CDS 25.0%
! AATCATTAGTTGGAATTGTA+GGG - chr7.1:54378353-54378372 MS.gene34812:CDS 25.0%
! CTAATCAGATTACTATAATG+AGG - chr7.1:54377705-54377724 MS.gene34812:CDS 25.0%
! GAATGAGAATAATAGTAATG+TGG - chr7.1:54377523-54377542 MS.gene34812:intron 25.0%
! TAATAGTAATGTGGTTGTTA+TGG - chr7.1:54377532-54377551 MS.gene34812:intron 25.0%
! TATCTGATGTTTATTCTGTA+GGG - chr7.1:54378856-54378875 MS.gene34812:CDS 25.0%
! TTATCTGATGTTTATTCTGT+AGG - chr7.1:54378855-54378874 MS.gene34812:CDS 25.0%
! TTCTACTACTAATAAAACTG+AGG - chr7.1:54378461-54378480 MS.gene34812:CDS 25.0%
!! ATTCCAACTAATGATTTTCA+TGG + chr7.1:54378349-54378368 None:intergenic 25.0%
!! TTCAAGTTTATCAACAATAG+GGG + chr7.1:54379159-54379178 None:intergenic 25.0%
!!! AAAGTTTTGTTAACAGTACT+TGG - chr7.1:54379117-54379136 MS.gene34812:CDS 25.0%
!!! CAGAAAATAAAGGATTAGTT+TGG + chr7.1:54378282-54378301 None:intergenic 25.0%
!!! CTGACTCTTTTCTTTATTTT+TGG + chr7.1:54378139-54378158 None:intergenic 25.0%
AAAGTAATTATTATGGCCCA+TGG - chr7.1:54377144-54377163 MS.gene34812:intron 30.0%
AAATAATAATGTTGGTACGC+TGG - chr7.1:54377931-54377950 MS.gene34812:CDS 30.0%
AAATAGTCTCACAAAGAAAG+AGG + chr7.1:54378443-54378462 None:intergenic 30.0%
AATAATAATGTTGGTACGCT+GGG - chr7.1:54377932-54377951 MS.gene34812:CDS 30.0%
ATATACGTGGTTCAAATGTT+TGG - chr7.1:54378884-54378903 MS.gene34812:CDS 30.0%
ATCATTAGTTGGAATTGTAG+GGG - chr7.1:54378354-54378373 MS.gene34812:CDS 30.0%
ATTAAGACCATTAAGACCAT+CGG + chr7.1:54377498-54377517 None:intergenic 30.0%
ATTCATGGTAGAATTGGAAA+TGG + chr7.1:54376911-54376930 None:intergenic 30.0%
ATTTACCAAGTGATGACAAA+GGG - chr7.1:54378086-54378105 MS.gene34812:CDS 30.0%
ATTTCCAATTCTACCATGAA+TGG - chr7.1:54376910-54376929 MS.gene34812:intron 30.0%
GACAGATGATTTCCAATATA+AGG + chr7.1:54378556-54378575 None:intergenic 30.0%
GGTTTAAATTTGAAAACGCA+TGG - chr7.1:54379075-54379094 MS.gene34812:CDS 30.0%
GTGCTCAAAAAACTTGAAAT+TGG - chr7.1:54376987-54377006 MS.gene34812:intron 30.0%
TAAACTTGAATTATGTGCTG+CGG - chr7.1:54379169-54379188 MS.gene34812:CDS 30.0%
TATACGTGGTTCAAATGTTT+GGG - chr7.1:54378885-54378904 MS.gene34812:CDS 30.0%
TCAGATTACTATAATGAGGT+TGG - chr7.1:54377709-54377728 MS.gene34812:CDS 30.0%
TCGTTTAAGTACGAAAGAAT+TGG - chr7.1:54377263-54377282 MS.gene34812:intron 30.0%
TTAAACTAGGAATTGTACGA+GGG + chr7.1:54378389-54378408 None:intergenic 30.0%
TTGGAAAGAGTTCTTCAAAA+TGG - chr7.1:54376936-54376955 MS.gene34812:intron 30.0%
TTTAAACTAGGAATTGTACG+AGG + chr7.1:54378390-54378409 None:intergenic 30.0%
TTTCCAATTCTACCATGAAT+GGG - chr7.1:54376911-54376930 MS.gene34812:intron 30.0%
! AATCTGATTAGCTATGTTTG+TGG + chr7.1:54377696-54377715 None:intergenic 30.0%
! ATTGGCTTATCAATGGATTT+CGG - chr7.1:54378811-54378830 MS.gene34812:CDS 30.0%
! TGAGGAGTTAAAATACGTTT+TGG - chr7.1:54378479-54378498 MS.gene34812:CDS 30.0%
! TGCGTTTTCAAATTTAAACC+TGG + chr7.1:54379075-54379094 None:intergenic 30.0%
! TTCTGAAAACATTGTAATGG+CGG - chr7.1:54378297-54378316 MS.gene34812:CDS 30.0%
!! GTTCACACAAAAGCATTATA+GGG + chr7.1:54379025-54379044 None:intergenic 30.0%
!!! CTTTTCTTTATTTTTGGTGC+TGG + chr7.1:54378133-54378152 None:intergenic 30.0%
AACAATGGAGGTAGTAATGT+GGG - chr7.1:54377749-54377768 MS.gene34812:CDS 35.0%
AACAGTACTTGGAATTCGTA+TGG - chr7.1:54379128-54379147 MS.gene34812:CDS 35.0%
AACTGGATGTAATCAAAGGT+TGG - chr7.1:54377877-54377896 MS.gene34812:CDS 35.0%
AATCCCATTCATGGTAGAAT+TGG + chr7.1:54376917-54376936 None:intergenic 35.0%
ACTGGATGTAATCAAAGGTT+GGG - chr7.1:54377878-54377897 MS.gene34812:CDS 35.0%
ATAGGGTAATGATCTGAAGA+GGG + chr7.1:54379008-54379027 None:intergenic 35.0%
ATGCTTCTTGGATGTCATAT+TGG - chr7.1:54377101-54377120 MS.gene34812:intron 35.0%
ATTATGGCTTTCCATCACAT+GGG - chr7.1:54378661-54378680 MS.gene34812:CDS 35.0%
ATTCTACCATGAATGGGATT+TGG - chr7.1:54376917-54376936 MS.gene34812:intron 35.0%
CAAATGTTTGGGAACTGATA+GGG - chr7.1:54378896-54378915 MS.gene34812:CDS 35.0%
CAGCCATGAAAATCATTAGT+TGG - chr7.1:54378343-54378362 MS.gene34812:CDS 35.0%
GAAATGTCACTGTCAATAAG+TGG - chr7.1:54377417-54377436 MS.gene34812:intron 35.0%
GATTTACCAAGTGATGACAA+AGG - chr7.1:54378085-54378104 MS.gene34812:CDS 35.0%
GGGACTGGAAATAATAATGT+TGG - chr7.1:54377923-54377942 MS.gene34812:CDS 35.0%
GGGTATATGAATGAGTATGT+AGG - chr7.1:54377077-54377096 MS.gene34812:intron 35.0%
GTCCTTTAATCATAAGGGAA+GGG - chr7.1:54378032-54378051 MS.gene34812:CDS 35.0%
TAACAATGGAGGTAGTAATG+TGG - chr7.1:54377748-54377767 MS.gene34812:CDS 35.0%
TACTCATTCATATACCCATG+TGG + chr7.1:54377074-54377093 None:intergenic 35.0%
TAGATGTAAGTAAAGGCAAG+TGG - chr7.1:54378625-54378644 MS.gene34812:CDS 35.0%
TATAGGGTAATGATCTGAAG+AGG + chr7.1:54379009-54379028 None:intergenic 35.0%
TATTATGGCTTTCCATCACA+TGG - chr7.1:54378660-54378679 MS.gene34812:CDS 35.0%
TCAAATGTTTGGGAACTGAT+AGG - chr7.1:54378895-54378914 MS.gene34812:CDS 35.0%
TCCTTTAATCATAAGGGAAG+GGG - chr7.1:54378033-54378052 MS.gene34812:CDS 35.0%
TCTCCTCCATGAATTGAAAT+CGG + chr7.1:54376824-54376843 None:intergenic 35.0%
TGACAAAGGGAAAGGTAAAA+TGG - chr7.1:54378099-54378118 MS.gene34812:CDS 35.0%
TGCTAACTGGATGTAATCAA+AGG - chr7.1:54377873-54377892 MS.gene34812:CDS 35.0%
TTATCGCCAACTGAAAAGAA+AGG - chr7.1:54378771-54378790 MS.gene34812:CDS 35.0%
! AATGATGCTTTTGTGCTAAC+TGG - chr7.1:54377860-54377879 MS.gene34812:CDS 35.0%
! AGAGCAAATTGGCTTATCAA+TGG - chr7.1:54378804-54378823 MS.gene34812:CDS 35.0%
! ATGGTCTTTGAGAAAGAAGA+TGG - chr7.1:54377224-54377243 MS.gene34812:intron 35.0%
! CAGATAGCTTTTGTGCTAAA+AGG - chr7.1:54377321-54377340 MS.gene34812:intron 35.0%
! CTAATGATTTTCATGGCTGT+TGG + chr7.1:54378342-54378361 None:intergenic 35.0%
!! AATTGGTGAAGCTATTTCTG+AGG - chr7.1:54377004-54377023 MS.gene34812:intron 35.0%
!! ACTATAATGAGGTTGGTGAA+TGG - chr7.1:54377716-54377735 MS.gene34812:CDS 35.0%
!! AGGTTTTACTTTTCACAGGA+TGG - chr7.1:54377607-54377626 MS.gene34812:intron 35.0%
!! AGTTAGCACAAAAGCATCAT+TGG + chr7.1:54377861-54377880 None:intergenic 35.0%
!! GGTTCACACAAAAGCATTAT+AGG + chr7.1:54379026-54379045 None:intergenic 35.0%
AAAAAGCCCTCAAAAGTCCA+GGG + chr7.1:54376963-54376982 None:intergenic 40.0%
AACATCAACGACTCTCCAAA+TGG - chr7.1:54376714-54376733 MS.gene34812:intron 40.0%
AACATTGACACAGGAAATGC+AGG - chr7.1:54378226-54378245 MS.gene34812:CDS 40.0%
AACTTCATTGGTCAAACTGG+AGG - chr7.1:54377635-54377654 MS.gene34812:CDS 40.0%
AAGTGCTAATGAGCAAGTTG+TGG - chr7.1:54378195-54378214 MS.gene34812:CDS 40.0%
AATGGAATGGGGTCTAACAA+TGG - chr7.1:54377734-54377753 MS.gene34812:CDS 40.0%
AATGTATATGCGCATTCGTG+TGG - chr7.1:54377169-54377188 MS.gene34812:intron 40.0%
AATGTGGTCAATTCTGATGC+AGG - chr7.1:54378058-54378077 MS.gene34812:CDS 40.0%
ACCTGTCCGATTTCAATTCA+TGG - chr7.1:54376815-54376834 MS.gene34812:intron 40.0%
ACGAACTTCATTGGTCAAAC+TGG - chr7.1:54377632-54377651 MS.gene34812:CDS 40.0%
AGGATGGTTACGAACTTCAT+TGG - chr7.1:54377623-54377642 MS.gene34812:CDS 40.0%
AGGTCTTTAATCTGCCACAT+GGG - chr7.1:54377057-54377076 MS.gene34812:intron 40.0%
AGTTGGAATTGTAGGGGATT+AGG - chr7.1:54378360-54378379 MS.gene34812:CDS 40.0%
ATGCGCATATACATTCTCCA+TGG + chr7.1:54377164-54377183 None:intergenic 40.0%
ATTAAAGGACCCGCAATGAT+TGG + chr7.1:54378022-54378041 None:intergenic 40.0%
ATTCATGTGGGAACAAATGC+TGG - chr7.1:54377779-54377798 MS.gene34812:CDS 40.0%
CAAATGTTTCAAACCTACCG+TGG - chr7.1:54378721-54378740 MS.gene34812:CDS 40.0%
CAGGAGACAAATAACAATGC+TGG - chr7.1:54378172-54378191 MS.gene34812:CDS 40.0%
CATAATCCTCATCAGCAATC+AGG - chr7.1:54377833-54377852 MS.gene34812:CDS 40.0%
CCTAGTCCGAGTTTATAAAC+CGG - chr7.1:54378413-54378432 MS.gene34812:CDS 40.0%
CTCTTTCCAAATCCCATTCA+TGG + chr7.1:54376926-54376945 None:intergenic 40.0%
GGAAAGGTAAAATGGACGAT+GGG - chr7.1:54378107-54378126 MS.gene34812:CDS 40.0%
GGAGATTCTTAAATGCTGGA+GGG - chr7.1:54377381-54377400 MS.gene34812:intron 40.0%
GGATGTCCGGTTTATAAACT+CGG + chr7.1:54378422-54378441 None:intergenic 40.0%
GGTCCTTTAATCATAAGGGA+AGG - chr7.1:54378031-54378050 MS.gene34812:CDS 40.0%
GTTGGAATTGTAGGGGATTA+GGG - chr7.1:54378361-54378380 MS.gene34812:CDS 40.0%
TAAAAAGCCCTCAAAAGTCC+AGG + chr7.1:54376964-54376983 None:intergenic 40.0%
TCACAAAGAAAGAGGATGTC+CGG + chr7.1:54378435-54378454 None:intergenic 40.0%
TCCATGAATTGAAATCGGAC+AGG + chr7.1:54376819-54376838 None:intergenic 40.0%
TGAAAACATTGTAATGGCGG+AGG - chr7.1:54378300-54378319 MS.gene34812:CDS 40.0%
TGCGCATATACATTCTCCAT+GGG + chr7.1:54377163-54377182 None:intergenic 40.0%
TGCGGGTCCTTTAATCATAA+GGG - chr7.1:54378027-54378046 MS.gene34812:CDS 40.0%
TGTCCGATTTCAATTCATGG+AGG - chr7.1:54376818-54376837 MS.gene34812:intron 40.0%
TTCATGTGGGAACAAATGCT+GGG - chr7.1:54377780-54377799 MS.gene34812:CDS 40.0%
TTGCGGGTCCTTTAATCATA+AGG - chr7.1:54378026-54378045 MS.gene34812:CDS 40.0%
TTTCAACGAAGCTGAAGTCT+GGG - chr7.1:54377031-54377050 MS.gene34812:intron 40.0%
TTTGTCTCCTGCTCAACATT+TGG + chr7.1:54378163-54378182 None:intergenic 40.0%
! AAATTTTCCAGAACTGCACC+AGG + chr7.1:54378978-54378997 None:intergenic 40.0%
! AATTTTCCAGAACTGCACCA+GGG + chr7.1:54378977-54378996 None:intergenic 40.0%
! ATATTGCTGAACCTCTGAAG+AGG - chr7.1:54377198-54377217 MS.gene34812:intron 40.0%
! ATGATTTTCATGGCTGTTGG+CGG + chr7.1:54378339-54378358 None:intergenic 40.0%
! CGGACTAGGTACTTTAAACT+AGG + chr7.1:54378402-54378421 None:intergenic 40.0%
! CTGTAGGGTATTCATATACG+TGG - chr7.1:54378871-54378890 MS.gene34812:CDS 40.0%
! TGGCGTATGACTGGTTATTA+TGG - chr7.1:54378645-54378664 MS.gene34812:CDS 40.0%
! TGTTTTACTGTTGATCGCCA+AGG - chr7.1:54378513-54378532 MS.gene34812:CDS 40.0%
!! AATGAGGTTGGTGAATGGAA+TGG - chr7.1:54377721-54377740 MS.gene34812:CDS 40.0%
!! ATGAGGTTGGTGAATGGAAT+GGG - chr7.1:54377722-54377741 MS.gene34812:CDS 40.0%
!! GAGTCTTTTGCTATATCTGC+GGG - chr7.1:54377285-54377304 MS.gene34812:intron 40.0%
!! GGAGTCTTTTGCTATATCTG+CGG - chr7.1:54377284-54377303 MS.gene34812:intron 40.0%
!! GTGGAGGTTTTACTTTTCAC+AGG - chr7.1:54377603-54377622 MS.gene34812:intron 40.0%
AACCTACCGTGGTGTATTCT+CGG - chr7.1:54378732-54378751 MS.gene34812:CDS 45.0%
AAGTAAAACCTCCACCACGT+AGG + chr7.1:54377598-54377617 None:intergenic 45.0%
ACGCATCAGTTGCTAAAGCA+CGG + chr7.1:54378941-54378960 None:intergenic 45.0%
ACTGTCAATAAGTGGCTCAG+AGG - chr7.1:54377425-54377444 MS.gene34812:intron 45.0%
AGGAGAGACTTCCATCAATC+TGG - chr7.1:54376838-54376857 MS.gene34812:intron 45.0%
AGTCAGACCAAATGTTGAGC+AGG - chr7.1:54378153-54378172 MS.gene34812:CDS 45.0%
ATGAAAGTGATTCCTGCTCC+AGG + chr7.1:54379204-54379223 None:intergenic 45.0%
ATTGCTTGAGCTTTGCGTTG+TGG - chr7.1:54376773-54376792 MS.gene34812:intron 45.0%
CAAGTGAGCATACGCTGTTT+GGG - chr7.1:54377561-54377580 MS.gene34812:intron 45.0%
CAGGTCTTTAATCTGCCACA+TGG - chr7.1:54377056-54377075 MS.gene34812:intron 45.0%
CCAAGTGATGACAAAGGGAA+AGG - chr7.1:54378091-54378110 MS.gene34812:CDS 45.0%
CCGGTTTATAAACTCGGACT+AGG + chr7.1:54378416-54378435 None:intergenic 45.0%
CCTTCAAGACCAATCATTGC+GGG - chr7.1:54378010-54378029 MS.gene34812:CDS 45.0%
CCTTTCCCTTTGTCATCACT+TGG + chr7.1:54378094-54378113 None:intergenic 45.0%
CTCCAAATGGATCCTCTACT+GGG - chr7.1:54376727-54376746 MS.gene34812:intron 45.0%
CTGATAGGGCTGTTGAAGAA+AGG - chr7.1:54378910-54378929 MS.gene34812:CDS 45.0%
CTTGAACCAGGATTCGTTGA+TGG - chr7.1:54377344-54377363 MS.gene34812:intron 45.0%
CTTTCAACGAAGCTGAAGTC+TGG - chr7.1:54377030-54377049 MS.gene34812:intron 45.0%
GAGCTGCTTGGGAATTTCTA+AGG - chr7.1:54378691-54378710 MS.gene34812:CDS 45.0%
GAGTATGTAGGCATGCTTCT+TGG - chr7.1:54377089-54377108 MS.gene34812:intron 45.0%
GAGTTCTTCAAAATGGTCCC+TGG - chr7.1:54376943-54376962 MS.gene34812:intron 45.0%
GCAGGAGTGAAAGAGCAAAT+TGG - chr7.1:54378793-54378812 MS.gene34812:CDS 45.0%
GCCCCTTCCCTTATGATTAA+AGG + chr7.1:54378037-54378056 None:intergenic 45.0%
GCCTTCAAGACCAATCATTG+CGG - chr7.1:54378009-54378028 MS.gene34812:CDS 45.0%
GGGAAAGGTAAAATGGACGA+TGG - chr7.1:54378106-54378125 MS.gene34812:CDS 45.0%
GGGAGATTCTTAAATGCTGG+AGG - chr7.1:54377380-54377399 MS.gene34812:intron 45.0%
GGTCAATTCTGATGCAGGAA+AGG - chr7.1:54378063-54378082 MS.gene34812:CDS 45.0%
GTGCAGATGAACATTGACAC+AGG - chr7.1:54378217-54378236 MS.gene34812:CDS 45.0%
GTGGAGGTCTTGCCTTATAT+TGG - chr7.1:54378541-54378560 MS.gene34812:CDS 45.0%
TCAAGTGAGCATACGCTGTT+TGG - chr7.1:54377560-54377579 MS.gene34812:intron 45.0%
TCATTGGTCAAACTGGAGGA+GGG - chr7.1:54377639-54377658 MS.gene34812:CDS 45.0%
TCTCCAAATGGATCCTCTAC+TGG - chr7.1:54376726-54376745 MS.gene34812:intron 45.0%
TGGGGGAGATTCTTAAATGC+TGG - chr7.1:54377377-54377396 MS.gene34812:intron 45.0%
TGTGCTAAAAGGCTTGAACC+AGG - chr7.1:54377332-54377351 MS.gene34812:intron 45.0%
TTCATTGGTCAAACTGGAGG+AGG - chr7.1:54377638-54377657 MS.gene34812:CDS 45.0%
TTGCTTGAGCTTTGCGTTGT+GGG - chr7.1:54376774-54376793 MS.gene34812:intron 45.0%
TTGGTACCTGATTGCTGATG+AGG + chr7.1:54377842-54377861 None:intergenic 45.0%
! AAATGGTCCCTGGACTTTTG+AGG - chr7.1:54376953-54376972 MS.gene34812:intron 45.0%
! AATGGTCCCTGGACTTTTGA+GGG - chr7.1:54376954-54376973 MS.gene34812:intron 45.0%
! CTCCTGCCTTTCTTTTCAGT+TGG + chr7.1:54378780-54378799 None:intergenic 45.0%
! GAACCTGTTTTCACCAGCTT+GGG + chr7.1:54376889-54376908 None:intergenic 45.0%
! TAATGATCTGAAGAGGGTGC+TGG + chr7.1:54379002-54379021 None:intergenic 45.0%
! TGATTTTCATGGCTGTTGGC+GGG + chr7.1:54378338-54378357 None:intergenic 45.0%
! TGCTATATCTGCGGGCTATT+GGG - chr7.1:54377293-54377312 MS.gene34812:intron 45.0%
! TTGCTATATCTGCGGGCTAT+TGG - chr7.1:54377292-54377311 MS.gene34812:intron 45.0%
!! TGAGGTTGGTGAATGGAATG+GGG - chr7.1:54377723-54377742 MS.gene34812:CDS 45.0%
!! TGGTGAAGCTATTTCTGAGG+TGG - chr7.1:54377007-54377026 MS.gene34812:intron 45.0%
AAAGGCAAGTGGCGTATGAC+TGG - chr7.1:54378636-54378655 MS.gene34812:CDS 50.0%
AAATGCTGGAGGGAGAACTG+TGG - chr7.1:54377391-54377410 MS.gene34812:intron 50.0%
AAGACCATGCTCCTCTTCAG+AGG + chr7.1:54377212-54377231 None:intergenic 50.0%
AAGTCGCCGAGAATACACCA+CGG + chr7.1:54378741-54378760 None:intergenic 50.0%
AATGCTGGAGGGAGAACTGT+GGG - chr7.1:54377392-54377411 MS.gene34812:intron 50.0%
AGGAAATGCAGGAGATGGCT+TGG - chr7.1:54378237-54378256 MS.gene34812:CDS 50.0%
ATTCTGAGCATCTGTGGGAC+TGG - chr7.1:54377908-54377927 MS.gene34812:CDS 50.0%
ATTGGTCAAACTGGAGGAGG+GGG - chr7.1:54377641-54377660 MS.gene34812:CDS 50.0%
CAGTTCAGATGACCCAGTAG+AGG + chr7.1:54376742-54376761 None:intergenic 50.0%
CATAAGGGAAGGGGCTAATG+TGG - chr7.1:54378042-54378061 MS.gene34812:CDS 50.0%
CATTGGTCAAACTGGAGGAG+GGG - chr7.1:54377640-54377659 MS.gene34812:CDS 50.0%
CGCCAACTGAAAAGAAAGGC+AGG - chr7.1:54378775-54378794 MS.gene34812:CDS 50.0%
CGGATTTATCTACCTGGAGC+AGG - chr7.1:54379189-54379208 MS.gene34812:CDS 50.0%
GACACAGGAAATGCAGGAGA+TGG - chr7.1:54378232-54378251 MS.gene34812:CDS 50.0%
GACCCAGTAGAGGATCCATT+TGG + chr7.1:54376732-54376751 None:intergenic 50.0%
GCTTTCCATCACATGGGAGA+CGG - chr7.1:54378667-54378686 MS.gene34812:CDS 50.0%
GGAAATGCAGGAGATGGCTT+GGG - chr7.1:54378238-54378257 MS.gene34812:CDS 50.0%
GGAATGGGGTCTAACAATGG+AGG - chr7.1:54377737-54377756 MS.gene34812:CDS 50.0%
GTCAATAAGTGGCTCAGAGG+TGG - chr7.1:54377428-54377447 MS.gene34812:intron 50.0%
GTCCCACAGATGCTCAGAAT+CGG + chr7.1:54377908-54377927 None:intergenic 50.0%
GTGATTGTAACACCCTGACC+AGG + chr7.1:54376867-54376886 None:intergenic 50.0%
GTGCTGCGGATTTATCTACC+TGG - chr7.1:54379183-54379202 MS.gene34812:CDS 50.0%
GTGCTTTAGCAACTGATGCG+TGG - chr7.1:54378940-54378959 MS.gene34812:CDS 50.0%
TCACCCAAGCTGGTGAAAAC+AGG - chr7.1:54376883-54376902 MS.gene34812:intron 50.0%
TCATTTCCCTGGTGCAGTTC+TGG - chr7.1:54378968-54378987 MS.gene34812:CDS 50.0%
TGGACACCATCAACGAATCC+TGG + chr7.1:54377353-54377372 None:intergenic 50.0%
TTAAGAATCTCCCCCAGCCT+TGG + chr7.1:54377373-54377392 None:intergenic 50.0%
! AACATTGTAATGGCGGAGGC+TGG - chr7.1:54378304-54378323 MS.gene34812:CDS 50.0%
! AGCCGATTCTGAGCATCTGT+GGG - chr7.1:54377903-54377922 MS.gene34812:CDS 50.0%
! GATTTTCATGGCTGTTGGCG+GGG + chr7.1:54378337-54378356 None:intergenic 50.0%
! GGAACCTGTTTTCACCAGCT+TGG + chr7.1:54376890-54376909 None:intergenic 50.0%
! GGTGGTTCCGATGGTCTTAA+TGG - chr7.1:54377488-54377507 MS.gene34812:intron 50.0%
! GGTGTTACAATCACCCAAGC+TGG - chr7.1:54376873-54376892 MS.gene34812:intron 50.0%
! TGAACCTCTGAAGAGGAGCA+TGG - chr7.1:54377205-54377224 MS.gene34812:intron 50.0%
!! CCCGCAATGATTGGTCTTGA+AGG + chr7.1:54378013-54378032 None:intergenic 50.0%
!! GGATTCGTTGATGGTGTCCA+AGG - chr7.1:54377353-54377372 MS.gene34812:intron 50.0%
!! GTGGGTGCTGACATTCATGT+GGG - chr7.1:54377767-54377786 MS.gene34812:CDS 50.0%
!! TGTGGGTGCTGACATTCATG+TGG - chr7.1:54377766-54377785 MS.gene34812:CDS 50.0%
ATCAATCTGGCGTCCTGGTC+AGG - chr7.1:54376851-54376870 MS.gene34812:intron 55.0%
ATGCTGGAGGGAGAACTGTG+GGG - chr7.1:54377393-54377412 MS.gene34812:intron 55.0%
CAAGACCTCCACTACGTCCT+TGG + chr7.1:54378533-54378552 None:intergenic 55.0%
CACAGATGCTCAGAATCGGC+TGG + chr7.1:54377904-54377923 None:intergenic 55.0%
CGAAGCTGAAGTCTGGGTTC+AGG - chr7.1:54377037-54377056 MS.gene34812:intron 55.0%
CGGAATGCTGTTAGTGACGC+AGG - chr7.1:54378831-54378850 MS.gene34812:CDS 55.0%
CTTCCATCAATCTGGCGTCC+TGG - chr7.1:54376846-54376865 MS.gene34812:intron 55.0%
GACAGACGCGCAATCATTCC+AGG - chr7.1:54379054-54379073 MS.gene34812:CDS 55.0%
GCGTGGCAGAATCATTTCCC+TGG - chr7.1:54378957-54378976 MS.gene34812:CDS 55.0%
GTGGCTCAGAGGTGGAAGAA+TGG - chr7.1:54377436-54377455 MS.gene34812:intron 55.0%
GTTGATCGCCAAGGACGTAG+TGG - chr7.1:54378522-54378541 MS.gene34812:CDS 55.0%
TACGCTGGGAGAGACATCAG+AGG - chr7.1:54377946-54377965 MS.gene34812:CDS 55.0%
TCAATCTGGCGTCCTGGTCA+GGG - chr7.1:54376852-54376871 MS.gene34812:intron 55.0%
TGACCAGGACGCCAGATTGA+TGG + chr7.1:54376852-54376871 None:intergenic 55.0%
TGCTGGGAGTCAACAGAGTG+AGG - chr7.1:54377796-54377815 MS.gene34812:CDS 55.0%
TGGGAGAGACATCAGAGGCA+GGG - chr7.1:54377951-54377970 MS.gene34812:CDS 55.0%
! AATGCAGGAGATGGCTTGGG+AGG - chr7.1:54378241-54378260 MS.gene34812:CDS 55.0%
! CAGCCGATTCTGAGCATCTG+TGG - chr7.1:54377902-54377921 MS.gene34812:CDS 55.0%
!! AGAGTGAGGTGCTGCTGACA+GGG - chr7.1:54377810-54377829 MS.gene34812:CDS 55.0%
!! CGTTGATGGTGTCCAAGGCT+GGG - chr7.1:54377358-54377377 MS.gene34812:intron 55.0%
!! GTTGATGGTGTCCAAGGCTG+GGG - chr7.1:54377359-54377378 MS.gene34812:intron 55.0%
!! TCGTTGATGGTGTCCAAGGC+TGG - chr7.1:54377357-54377376 MS.gene34812:intron 55.0%
!! TTGATGGTGTCCAAGGCTGG+GGG - chr7.1:54377360-54377379 MS.gene34812:intron 55.0%
ATGGGAGACGGAGAGCTGCT+TGG - chr7.1:54378679-54378698 MS.gene34812:CDS 60.0%
CGCCGAGAATACACCACGGT+AGG + chr7.1:54378737-54378756 None:intergenic 60.0%
CGTGTACGAGTCCTACGTGG+TGG - chr7.1:54377584-54377603 MS.gene34812:intron 60.0%
CTGGGAGAGACATCAGAGGC+AGG - chr7.1:54377950-54377969 MS.gene34812:CDS 60.0%
GATCGCCAAGGACGTAGTGG+AGG - chr7.1:54378525-54378544 MS.gene34812:CDS 60.0%
GCTCTCCGTCTCCCATGTGA+TGG + chr7.1:54378675-54378694 None:intergenic 60.0%
GGAGGTCGTAATGCTGGTCG+AGG - chr7.1:54377467-54377486 MS.gene34812:intron 60.0%
GGTCGTAATGCTGGTCGAGG+TGG - chr7.1:54377470-54377489 MS.gene34812:intron 60.0%
GTACGAGTCCTACGTGGTGG+AGG - chr7.1:54377587-54377606 MS.gene34812:intron 60.0%
GTCAAACTGGAGGAGGGGGT+GGG - chr7.1:54377645-54377664 MS.gene34812:CDS 60.0%
TGCTGGAGGGAGAACTGTGG+GGG - chr7.1:54377394-54377413 MS.gene34812:intron 60.0%
TGGGAGACGGAGAGCTGCTT+GGG - chr7.1:54378680-54378699 MS.gene34812:CDS 60.0%
TTGCGCGTCTGTCTCACGCA+CGG + chr7.1:54379047-54379066 None:intergenic 60.0%
!! CAGAGTGAGGTGCTGCTGAC+AGG - chr7.1:54377809-54377828 MS.gene34812:CDS 60.0%
GCGCGTGGAGGTCGTAATGC+TGG - chr7.1:54377461-54377480 MS.gene34812:intron 65.0%
GCTGGAGGGAGAACTGTGGG+GGG - chr7.1:54377395-54377414 MS.gene34812:intron 65.0%
GCTGGTCGAGGTGGTTCCGA+TGG - chr7.1:54377479-54377498 MS.gene34812:intron 65.0%
GGAAGAATGGCAGCGCGTGG+AGG - chr7.1:54377449-54377468 MS.gene34812:intron 65.0%
GGGCGTGTACGAGTCCTACG+TGG - chr7.1:54377581-54377600 MS.gene34812:intron 65.0%
GGTCAAACTGGAGGAGGGGG+TGG - chr7.1:54377644-54377663 MS.gene34812:CDS 65.0%
GGTGGAAGAATGGCAGCGCG+TGG - chr7.1:54377446-54377465 MS.gene34812:intron 65.0%
TTCATGGCTGTTGGCGGGGC+TGG + chr7.1:54378333-54378352 None:intergenic 65.0%
GACATCAGAGGCAGGGCGCG+TGG - chr7.1:54377958-54377977 MS.gene34812:CDS 70.0%
CTGGAGGAGGGGGTGGGCAG+TGG - chr7.1:54377651-54377670 MS.gene34812:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 54376696 54379231 54376696 ID=MS.gene34812
chr7.1 mRNA 54376696 54379231 54376696 ID=MS.gene34812.t1;Parent=MS.gene34812
chr7.1 exon 54377618 54379231 54377618 ID=MS.gene34812.t1.exon1;Parent=MS.gene34812.t1
chr7.1 CDS 54377618 54379231 54377618 ID=cds.MS.gene34812.t1;Parent=MS.gene34812.t1
chr7.1 exon 54376696 54376716 54376696 ID=MS.gene34812.t1.exon2;Parent=MS.gene34812.t1
chr7.1 CDS 54376696 54376716 54376696 ID=cds.MS.gene34812.t1;Parent=MS.gene34812.t1
Gene Sequence

>MS.gene34812

ATGGAAAATTTCAATGTCAACATCAACGACTCTCCAAATGGATCCTCTACTGGGTCATCTGAACTGTCTCACGAAGCATTGCTTGAGCTTTGCGTTGTGGGTACAGTCTTAACAGACAAACCTGTCCGATTTCAATTCATGGAGGAGAGACTTCCATCAATCTGGCGTCCTGGTCAGGGTGTTACAATCACCCAAGCTGGTGAAAACAGGTTCCATTTCCAATTCTACCATGAATGGGATTTGGAAAGAGTTCTTCAAAATGGTCCCTGGACTTTTGAGGGCTTTTTACTTGTGCTCAAAAAACTTGAAATTGGTGAAGCTATTTCTGAGGTGGCTTTCAACGAAGCTGAAGTCTGGGTTCAGGTCTTTAATCTGCCACATGGGTATATGAATGAGTATGTAGGCATGCTTCTTGGATGTCATATTGGCAGATTTGTCAAATATGATGAAAGTAATTATTATGGCCCATGGAGAATGTATATGCGCATTCGTGTGGCTCTGAATATTGCTGAACCTCTGAAGAGGAGCATGGTCTTTGAGAAAGAAGATGGAACAGCTGTCAATGTCTCGTTTAAGTACGAAAGAATTGGAGTCTTTTGCTATATCTGCGGGCTATTGGGACACACAGATAGCTTTTGTGCTAAAAGGCTTGAACCAGGATTCGTTGATGGTGTCCAAGGCTGGGGGAGATTCTTAAATGCTGGAGGGAGAACTGTGGGGGGAAATGTCACTGTCAATAAGTGGCTCAGAGGTGGAAGAATGGCAGCGCGTGGAGGTCGTAATGCTGGTCGAGGTGGTTCCGATGGTCTTAATGGTCTTAATAATTTGAATGAGAATAATAGTAATGTGGTTGTTATGGCTCAATCAAGTGAGCATACGCTGTTTGGGCGTGTACGAGTCCTACGTGGTGGAGGTTTTACTTTTCACAGGATGGTTACGAACTTCATTGGTCAAACTGGAGGAGGGGGTGGGCAGTGGATCCCTTTTGAATTAAATTCCACAAACATAGCTAATCAGATTACTATAATGAGGTTGGTGAATGGAATGGGGTCTAACAATGGAGGTAGTAATGTGGGTGCTGACATTCATGTGGGAACAAATGCTGGGAGTCAACAGAGTGAGGTGCTGCTGACAGGGCATAATCCTCATCAGCAATCAGGTACCAATGATGCTTTTGTGCTAACTGGATGTAATCAAAGGTTGGGCCAGCCGATTCTGAGCATCTGTGGGACTGGAAATAATAATGTTGGTACGCTGGGAGAGACATCAGAGGCAGGGCGCGTGGTCTGTGCAAAGAAGAAAGATAAAGTTTTGCCTTCAAGACCAATCATTGCGGGTCCTTTAATCATAAGGGAAGGGGCTAATGTGGTCAATTCTGATGCAGGAAAGGATTTACCAAGTGATGACAAAGGGAAAGGTAAAATGGACGATGGGCCAGCACCAAAAATAAAGAAAAGAGTCAGACCAAATGTTGAGCAGGAGACAAATAACAATGCTGGAAGTGCTAATGAGCAAGTTGTGGTGCAGATGAACATTGACACAGGAAATGCAGGAGATGGCTTGGGAGGCAGATTTACTTCAGTCCAAACTAATCCTTTATTTTCTGAAAACATTGTAATGGCGGAGGCTGGAAACCAGCCCCGCCAACAGCCATGAAAATCATTAGTTGGAATTGTAGGGGATTAGGGAGCCCTCGTACAATTCCTAGTTTAAAGTACCTAGTCCGAGTTTATAAACCGGACATCCTCTTTCTTTGTGAGACTATTTCTACTACTAATAAAACTGAGGAGTTAAAATACGTTTTGGATTTTGATTGTTGTTTTACTGTTGATCGCCAAGGACGTAGTGGAGGTCTTGCCTTATATTGGAAATCATCTGTCAATTGTTCAATATCTAACTATTCTGTTAATCATATTGATGCTGAAATATTAGATGTAAGTAAAGGCAAGTGGCGTATGACTGGTTATTATGGCTTTCCATCACATGGGAGACGGAGAGCTGCTTGGGAATTTCTAAGGCAGTTAGCAAATGTTTCAAACCTACCGTGGTGTATTCTCGGCGACTTTAATGACATTTTATCGCCAACTGAAAAGAAAGGCAGGAGTGAAAGAGCAAATTGGCTTATCAATGGATTTCGGAATGCTGTTAGTGACGCAGGTTTATCTGATGTTTATTCTGTAGGGTATTCATATACGTGGTTCAAATGTTTGGGAACTGATAGGGCTGTTGAAGAAAGGTTAGACCGTGCTTTAGCAACTGATGCGTGGCAGAATCATTTCCCTGGTGCAGTTCTGGAAAATTTGCCAGCACCCTCTTCAGATCATTACCCTATAATGCTTTTGTGTGAACCGTGCGTGAGACAGACGCGCAATCATTCCAGGTTTAAATTTGAAAACGCATGGCTGATTGATCCAGACTTTAAAAGTTTTGTTAACAGTACTTGGAATTCGTATGGCAATTCCCCTATTGTTGATAAACTTGAATTATGTGCTGCGGATTTATCTACCTGGAGCAGGAATCACTTTCATCACCTTAA

Protein sequence

>MS.gene34812.t1

MENFNVNINDSPNGSSTGSSELSHEALLELCVVGTVLTDKPVRFQFMEERLPSIWRPGQGVTITQAGENRFHFQFYHEWDLERVLQNGPWTFEGFLLVLKKLEIGEAISEVAFNEAEVWVQVFNLPHGYMNEYVGMLLGCHIGRFVKYDESNYYGPWRMYMRIRVALNIAEPLKRSMVFEKEDGTAVNVSFKYERIGVFCYICGLLGHTDSFCAKRLEPGFVDGVQGWGRFLNAGGRTVGGNVTVNKWLRGGRMAARGGRNAGRGGSDGLNGLNNLNENNSNVVVMAQSSEHTLFGRVRVLRGGGFTFHRMVTNFIGQTGGGGGQWIPFELNSTNIANQITIMRLVNGMGSNNGGSNVGADIHVGTNAGSQQSEVLLTGHNPHQQSGTNDAFVLTGCNQRLGQPILSICGTGNNNVGTLGETSEAGRVVCAKKKDKVLPSRPIIAGPLIIREGANVVNSDAGKDLPSDDKGKGKMDDGPAPKIKKRVRPNVEQETNNNAGSANEQVVVQMNIDTGNAGDGLGGRFTSVQTNPLFSENIESLSSP