AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086430 MtrunA17_Chr1g0202661 89.677 310 18 3 1 310 1 296 0.0 521
Msa0086430 MtrunA17_Chr6g0468841 71.963 321 71 6 1 310 1 313 1.05e-154 435
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086430 AT4G25700.1 66.346 312 86 5 1 307 1 298 1.09e-144 410
Msa0086430 AT5G52570.1 67.302 315 78 7 1 308 1 297 2.45e-136 388
Msa0086430 AT4G25700.2 58.952 229 75 5 1 224 1 215 3.09e-85 256
Msa0086430 AT4G25700.3 58.952 229 75 5 1 224 1 215 3.09e-85 256
Msa0086430 AT5G52570.2 86.047 86 12 0 223 308 143 228 1.05e-39 139
Msa0086430 AT5G52570.2 47.283 184 64 9 1 171 1 164 1.17e-35 129

Find 106 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGATTGTAGGGCTTTA+AGG 0.141087 1_2:+67153023 None:intergenic
TTTAGGTAGGTATGGAATAT+TGG 0.214997 1_2:-67152288 Msa0086430:intron
TTCATCTGGTTAGTGTGTTT+TGG 0.236695 1_2:+67152856 None:intergenic
CTCTTCTTTCACCCATTCAT+TGG 0.248086 1_2:-67153162 Msa0086430:five_prime_UTR
GGTCTTGGAATTACGGTGTT+TGG 0.277671 1_2:-67151700 Msa0086430:CDS
GCAATTGCTCTTCTCTCATA+TGG 0.287011 1_2:-67151920 Msa0086430:CDS
TTCTTGTTCTTTGGGTTTGA+AGG 0.312771 1_2:+67152917 None:intergenic
TAGCTTTGGTGTTACCTCTA+TGG 0.317708 1_2:-67152716 Msa0086430:CDS
TTAGGTAGGTATGGAATATT+GGG 0.328698 1_2:-67152287 Msa0086430:intron
CTTCACCGTTTGTGTTCTAA+TGG 0.335091 1_2:-67152884 Msa0086430:CDS
TGAGAGTTGGAGGAGATTGT+AGG 0.343658 1_2:+67153014 None:intergenic
TGAGGGCTGTGTTTACTGTT+AGG 0.353483 1_2:+67152811 None:intergenic
GTCTTGGAATTACGGTGTTT+GGG 0.363241 1_2:-67151699 Msa0086430:CDS
GATGGGCTCATGAGGTTCTA+TGG 0.363709 1_2:-67152261 Msa0086430:CDS
GCTATGACGGAAACCTCTTA+AGG 0.364201 1_2:+67152945 None:intergenic
TGACTAGGGTCTTGGAATTA+CGG 0.376865 1_2:-67151707 Msa0086430:intron
TTGGTGCCTGGTCTCTGCTT+TGG 0.387095 1_2:-67151881 Msa0086430:CDS
GTATGGAATATTGGGCTAGA+TGG 0.394991 1_2:-67152279 Msa0086430:CDS
GAGAGTTGGAGGAGATTGTA+GGG 0.405743 1_2:+67153015 None:intergenic
GTTCCTTGGTCTGAAATGTT+TGG 0.410492 1_2:-67152420 Msa0086430:CDS
TCATCTTATGACTAGGGTCT+TGG 0.416939 1_2:-67151715 Msa0086430:intron
GGGAAGAAGTTGAGAGTTGG+AGG 0.422714 1_2:+67153004 None:intergenic
CTATGACGGAAACCTCTTAA+GGG 0.426369 1_2:+67152946 None:intergenic
TTTAACAAGGGATTGGTGCC+TGG 0.432109 1_2:-67151893 Msa0086430:CDS
GGCACATTTGCCCTCTCAGT+TGG 0.435097 1_2:-67152399 Msa0086430:CDS
AAGAGAAGGGATTGGATGGA+TGG 0.435764 1_2:+67153180 None:intergenic
CATGTTTGTCCATGATGGAT+TGG 0.437840 1_2:-67151668 Msa0086430:CDS
TTATAGATTCTCATGGCAAA+TGG 0.438735 1_2:-67152677 Msa0086430:CDS
CCCCTTTGAATTTGTCCGAA+TGG 0.445592 1_2:+67151408 None:intergenic
GGGCTTTAAGGTTGTGGCGG+TGG 0.448289 1_2:+67153035 None:intergenic
GCCTACATGTTTGTCCATGA+TGG 0.451700 1_2:-67151673 Msa0086430:CDS
GTACTAGTGGAGAGGTTCCT+TGG 0.454261 1_2:-67152434 Msa0086430:CDS
AGCTCAAATGGTCCCTCTCT+TGG 0.457561 1_2:+67151977 None:intergenic
TTGTTTGCAGCTCCACCATT+CGG 0.466820 1_2:-67151423 Msa0086430:intron
GACAGAGACAAGCCAATGAA+TGG 0.467951 1_2:+67153150 None:intergenic
AGCTAGAGAAAGAGATAAGT+AGG 0.469767 1_2:-67150930 Msa0086430:CDS
AAAACATCATTAAGCTCAAA+TGG 0.470967 1_2:+67151965 None:intergenic
TCAGCCGCCATGGAGAATAA+AGG 0.471323 1_2:+67153063 None:intergenic
AACAGCTAAGATTGCCATAG+AGG 0.474363 1_2:+67152702 None:intergenic
AAATTCAAAGGGGTGCCATA+TGG 0.476176 1_2:-67151398 Msa0086430:CDS
ACCATTCGGACAAATTCAAA+GGG 0.476981 1_2:-67151409 Msa0086430:CDS
AAGGGGAAGAAGTTGAGAGT+TGG 0.477509 1_2:+67153001 None:intergenic
GCAGCTGTAATGTCTAGCTT+TGG 0.479617 1_2:-67152730 Msa0086430:CDS
AGGAGAACAAGATCATATAC+TGG 0.482339 1_2:-67150910 Msa0086430:CDS
TATGAGAGAAGAGCAATTGC+AGG 0.484302 1_2:+67151923 None:intergenic
GAAGTAGGGCACGTTGGCAA+TGG 0.491586 1_2:+67151621 None:intergenic
ATCGTAACCTTTATTCTCCA+TGG 0.493629 1_2:-67153070 Msa0086430:exon
GAGAGATGAGTGGAAAATGA+AGG 0.494270 1_2:+67153118 None:intergenic
AGACCTCATGCATGTGCCAC+AGG 0.495599 1_2:+67152230 None:intergenic
ACGTTGGCAATGGGACCCAC+AGG 0.500337 1_2:+67151631 None:intergenic
AGCAGCAACTCTTGTGAAGT+AGG 0.501312 1_2:+67151606 None:intergenic
ATTGTAGGGCTTTAAGGTTG+TGG 0.501902 1_2:+67153029 None:intergenic
TTAGTAATAAATAATACAGC+AGG 0.511514 1_2:-67150778 Msa0086430:three_prime_UTR
TATGGAATATTGGGCTAGAT+GGG 0.511988 1_2:-67152278 Msa0086430:CDS
AAGTAGGGCACGTTGGCAAT+GGG 0.513920 1_2:+67151622 None:intergenic
ATCTTCCATTAGAACACAAA+CGG 0.516336 1_2:+67152879 None:intergenic
CACCATTCGGACAAATTCAA+AGG 0.517507 1_2:-67151410 Msa0086430:CDS
CTTTGAATTTGTCCGAATGG+TGG 0.523450 1_2:+67151411 None:intergenic
ATGAAAGGAAATTGAGGAGG+TGG 0.523479 1_2:+67153263 None:intergenic
GTGCAGGAAGTTGAAGAAGT+GGG 0.525266 1_2:-67150964 Msa0086430:intron
ACAGAGACAAGCCAATGAAT+GGG 0.528436 1_2:+67153151 None:intergenic
GGTGAAAGAAGAGAAGGGAT+TGG 0.532262 1_2:+67153172 None:intergenic
TTTGTATGATAGGGTACTAG+TGG 0.536420 1_2:-67152447 Msa0086430:intron
AAAGAAGAGAAGGGATTGGA+TGG 0.538065 1_2:+67153176 None:intergenic
CTGTTTATTATAGATTCTCA+TGG 0.538973 1_2:-67152684 Msa0086430:CDS
AAAGAAATGAAAGGAAATTG+AGG 0.539095 1_2:+67153257 None:intergenic
GGTGCAGGAAGTTGAAGAAG+TGG 0.541999 1_2:-67150965 Msa0086430:intron
GGGCTGTGTTTACTGTTAGG+AGG 0.545643 1_2:+67152814 None:intergenic
TGAGGAGGTGGTGTTGTGGT+CGG 0.554664 1_2:+67153275 None:intergenic
AACACAACATCACAAAATTG+TGG 0.558528 1_2:-67153210 Msa0086430:five_prime_UTR
TCTTATGAACCAATCCATCA+TGG 0.562531 1_2:+67151659 None:intergenic
TTCCCTGTGGCACATGCATG+AGG 0.571758 1_2:-67152233 Msa0086430:intron
GAATGGGTGAAAGAAGAGAA+GGG 0.579013 1_2:+67153167 None:intergenic
TGAATGGGTGAAAGAAGAGA+AGG 0.582097 1_2:+67153166 None:intergenic
GGTGGAAAGTTCAGCCGCCA+TGG 0.584774 1_2:+67153053 None:intergenic
GCAGCAACTCTTGTGAAGTA+GGG 0.586414 1_2:+67151607 None:intergenic
CAGGAAGTTGAAGAAGTGGG+AGG 0.586564 1_2:-67150961 Msa0086430:CDS
TAGACATTACAGCTGCAACT+AGG 0.594222 1_2:+67152737 None:intergenic
AGGAAGTTGAAGAAGTGGGA+GGG 0.595124 1_2:-67150960 Msa0086430:CDS
GTCACATCATCGACCAAGAG+AGG 0.605840 1_2:-67151990 Msa0086430:CDS
TTGGGCTAGATGGGCTCATG+AGG 0.606671 1_2:-67152269 Msa0086430:CDS
TATGACGGAAACCTCTTAAG+GGG 0.609525 1_2:+67152947 None:intergenic
GATGAGTGGAAAATGAAGGT+TGG 0.616024 1_2:+67153122 None:intergenic
TACAGCAGCACCAACTGAGA+GGG 0.619847 1_2:+67152389 None:intergenic
TTCTATGGCATGCTTCCCTG+TGG 0.625607 1_2:-67152246 Msa0086430:CDS
ATATATACAAAAGAAATGAA+AGG 0.627298 1_2:+67153248 None:intergenic
GACCTCATGCATGTGCCACA+GGG 0.632725 1_2:+67152231 None:intergenic
AGAGCAATTCGATTAATGCA+TGG 0.641419 1_2:-67150835 Msa0086430:three_prime_UTR
AAATTGAGGAGGTGGTGTTG+TGG 0.646197 1_2:+67153271 None:intergenic
TAGATTCTCATGGCAAATGG+AGG 0.648620 1_2:-67152674 Msa0086430:intron
ACTGCACCAAAGCAGAGACC+AGG 0.649131 1_2:+67151875 None:intergenic
TCCATCATGGACAAACATGT+AGG 0.652573 1_2:+67151672 None:intergenic
GTAGGGCTTTAAGGTTGTGG+CGG 0.654013 1_2:+67153032 None:intergenic
TCACATCATCGACCAAGAGA+GGG 0.657623 1_2:-67151989 Msa0086430:CDS
GAAATGAAAGGAAATTGAGG+AGG 0.658110 1_2:+67153260 None:intergenic
GTGCCAAACATTTCAGACCA+AGG 0.665898 1_2:+67152417 None:intergenic
GTAACCTTTATTCTCCATGG+CGG 0.666735 1_2:-67153067 Msa0086430:exon
TTACAGCAGCACCAACTGAG+AGG 0.672349 1_2:+67152388 None:intergenic
TCTTGTGAAGTAGGGCACGT+TGG 0.672979 1_2:+67151615 None:intergenic
ATGATAGGGTACTAGTGGAG+AGG 0.675739 1_2:-67152442 Msa0086430:intron
CGTTGGCAATGGGACCCACA+GGG 0.676768 1_2:+67151632 None:intergenic
GGTTCATAAGAGATTCCCTG+TGG 0.688013 1_2:-67151647 Msa0086430:CDS
ATGACGGAAACCTCTTAAGG+GGG 0.694254 1_2:+67152948 None:intergenic
CACTAACCAGATGAAAACTG+AGG 0.695160 1_2:-67152848 Msa0086430:CDS
GTTCATAAGAGATTCCCTGT+GGG 0.700599 1_2:-67151646 Msa0086430:CDS
CCATTCGGACAAATTCAAAG+GGG 0.749285 1_2:-67151408 Msa0086430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATACAAAAGAAATGAA+AGG + chr1_2:67150736-67150755 None:intergenic 15.0%
!!! AAAATGAAATTGGTTAATTT+TGG - chr1_2:67151647-67151666 Msa0086430:CDS 15.0%
!!! AATTCAACATTGATTTTTTT+AGG - chr1_2:67151676-67151695 Msa0086430:CDS 15.0%
!!! ATTTTTATTTTTTGTGCAAA+TGG - chr1_2:67152505-67152524 Msa0086430:intron 15.0%
!!! TTTTTATTTTTTGTGCAAAT+GGG - chr1_2:67152506-67152525 Msa0086430:intron 15.0%
!!! ATTTTTAGTTGCACAAAAAT+TGG - chr1_2:67151193-67151212 Msa0086430:intron 20.0%
!!! TCATATGGTTTTTTTAACAA+GGG - chr1_2:67152076-67152095 Msa0086430:intron 20.0%
!! TTAGTAAATCCCTTAATTAA+CGG - chr1_2:67152158-67152177 Msa0086430:intron 20.0%
!! TAAACAAAAGAAAATATGAG+TGG - chr1_2:67152463-67152482 Msa0086430:intron 20.0%
!! AAAAAAAAAAACCAAGAAGA+GGG + chr1_2:67152646-67152665 None:intergenic 20.0%
!! TTAGTAATAAATAATACAGC+AGG - chr1_2:67153203-67153222 Msa0086430:five_prime_UTR 20.0%
! AAAGAAATGAAAGGAAATTG+AGG + chr1_2:67150727-67150746 None:intergenic 25.0%
!!! TGTTGATTTTCTTGTTCTTT+GGG + chr1_2:67151075-67151094 None:intergenic 25.0%
! TTTGTGCAACTAAAAATTGA+GGG + chr1_2:67151190-67151209 None:intergenic 25.0%
!! TTTTGTGCAACTAAAAATTG+AGG + chr1_2:67151191-67151210 None:intergenic 25.0%
! CTGTTTATTATAGATTCTCA+TGG - chr1_2:67151297-67151316 Msa0086430:intron 25.0%
!!! ATCGTTTTTTGAATGATGTT+TGG - chr1_2:67151507-67151526 Msa0086430:intron 25.0%
!!! TCGTTTTTTGAATGATGTTT+GGG - chr1_2:67151508-67151527 Msa0086430:intron 25.0%
! TCAGCAATTGAAAATGAAAT+TGG - chr1_2:67151637-67151656 Msa0086430:CDS 25.0%
!!! CAACATTGATTTTTTTAGGT+AGG - chr1_2:67151680-67151699 Msa0086430:CDS 25.0%
!!! TTGATTTTTTTAGGTAGGTA+TGG - chr1_2:67151685-67151704 Msa0086430:CDS 25.0%
! TGTGAAAGAAAAGAGAAAAT+GGG + chr1_2:67151800-67151819 None:intergenic 25.0%
! ATGTGAAAGAAAAGAGAAAA+TGG + chr1_2:67151801-67151820 None:intergenic 25.0%
! ATGTGAATAAACAAATGCAT+TGG - chr1_2:67151847-67151866 Msa0086430:intron 25.0%
! AAAACATCATTAAGCTCAAA+TGG + chr1_2:67152019-67152038 None:intergenic 25.0%
!!! CTCATATGGTTTTTTTAACA+AGG - chr1_2:67152075-67152094 Msa0086430:intron 25.0%
! TCAAGCAATTCTTAATTACT+TGG + chr1_2:67152406-67152425 None:intergenic 25.0%
! CAAAAAAAAAAACCAAGAAG+AGG + chr1_2:67152647-67152666 None:intergenic 25.0%
! GATTATTCATCAATTAAGTG+TGG - chr1_2:67152742-67152761 Msa0086430:CDS 25.0%
!!! GTTTAAAAGAATTTTGAGTG+TGG - chr1_2:67153123-67153142 Msa0086430:five_prime_UTR 25.0%
!!! ACAGCATGTTATTTTAATAC+AGG - chr1_2:67153247-67153266 Msa0086430:five_prime_UTR 25.0%
AACACAACATCACAAAATTG+TGG - chr1_2:67150771-67150790 Msa0086430:three_prime_UTR 30.0%
!! TTTGAAGGATTTTGCTATGA+CGG + chr1_2:67151052-67151071 None:intergenic 30.0%
!!! GTGTTGATTTTCTTGTTCTT+TGG + chr1_2:67151076-67151095 None:intergenic 30.0%
ATCTTCCATTAGAACACAAA+CGG + chr1_2:67151105-67151124 None:intergenic 30.0%
TTATAGATTCTCATGGCAAA+TGG - chr1_2:67151304-67151323 Msa0086430:intron 30.0%
! ATTTGACACCGTAATTTTGT+AGG - chr1_2:67151381-67151400 Msa0086430:CDS 30.0%
TTTCAGCTCCTACAAAATTA+CGG + chr1_2:67151392-67151411 None:intergenic 30.0%
! TAAGTGCATGTTTGAAATGA+CGG + chr1_2:67151472-67151491 None:intergenic 30.0%
!! TTTGGGTTGTTTGTATGATA+GGG - chr1_2:67151525-67151544 Msa0086430:intron 30.0%
TTTAGGTAGGTATGGAATAT+TGG - chr1_2:67151693-67151712 Msa0086430:CDS 30.0%
TTAGGTAGGTATGGAATATT+GGG - chr1_2:67151694-67151713 Msa0086430:CDS 30.0%
! GCAAAATATTCAAGTTAGCA+TGG + chr1_2:67151926-67151945 None:intergenic 30.0%
GATTCAATGCTATTGGTATA+AGG + chr1_2:67151948-67151967 None:intergenic 30.0%
CATCTTTGATTCAATGCTAT+TGG + chr1_2:67151955-67151974 None:intergenic 30.0%
!!! TGGTTTTTTTAACAAGGGAT+TGG - chr1_2:67152081-67152100 Msa0086430:intron 30.0%
CCAATGAAACCGTTAATTAA+GGG + chr1_2:67152170-67152189 None:intergenic 30.0%
CCTTAATTAACGGTTTCATT+GGG - chr1_2:67152168-67152187 Msa0086430:intron 30.0%
TCATTTCAGAGAATACATCA+GGG + chr1_2:67152241-67152260 None:intergenic 30.0%
CAAACAAACAACAAAACCAA+AGG + chr1_2:67152545-67152564 None:intergenic 30.0%
! CAAATTTGGATGCATTTTGT+GGG - chr1_2:67152963-67152982 Msa0086430:CDS 30.0%
GAAATGAAAGGAAATTGAGG+AGG + chr1_2:67150724-67150743 None:intergenic 35.0%
ATCGTAACCTTTATTCTCCA+TGG - chr1_2:67150911-67150930 Msa0086430:CDS 35.0%
! TTCTTGTTCTTTGGGTTTGA+AGG + chr1_2:67151067-67151086 None:intergenic 35.0%
! TTCATCTGGTTAGTGTGTTT+TGG + chr1_2:67151128-67151147 None:intergenic 35.0%
! TTTCTTCCTCAGTTTTCATC+TGG + chr1_2:67151142-67151161 None:intergenic 35.0%
!! GTTTGGGTTGTTTGTATGAT+AGG - chr1_2:67151524-67151543 Msa0086430:intron 35.0%
! TTTGTATGATAGGGTACTAG+TGG - chr1_2:67151534-67151553 Msa0086430:intron 35.0%
! TATGGAATATTGGGCTAGAT+GGG - chr1_2:67151703-67151722 Msa0086430:CDS 35.0%
AAAAGAGAAAATGGGAAGAC+TGG + chr1_2:67151792-67151811 None:intergenic 35.0%
CCCTTAATTAACGGTTTCAT+TGG - chr1_2:67152167-67152186 Msa0086430:intron 35.0%
CCCAATGAAACCGTTAATTA+AGG + chr1_2:67152171-67152190 None:intergenic 35.0%
GTCATTTCAGAGAATACATC+AGG + chr1_2:67152242-67152261 None:intergenic 35.0%
ACATCCTCATCTTATGACTA+GGG - chr1_2:67152260-67152279 Msa0086430:CDS 35.0%
TCTTATGAACCAATCCATCA+TGG + chr1_2:67152325-67152344 None:intergenic 35.0%
TGTGCAAATGGGATCTAATT+TGG - chr1_2:67152517-67152536 Msa0086430:intron 35.0%
ACCATTCGGACAAATTCAAA+GGG - chr1_2:67152572-67152591 Msa0086430:intron 35.0%
TGTGGAGAAAAGAGAAAAAC+TGG - chr1_2:67152760-67152779 Msa0086430:CDS 35.0%
GCTAGTTGAGTAGTACTTAT+GGG - chr1_2:67152842-67152861 Msa0086430:CDS 35.0%
CTAGTTGAGTAGTACTTATG+GGG - chr1_2:67152843-67152862 Msa0086430:CDS 35.0%
CCACAAAATGCATCCAAATT+TGG + chr1_2:67152965-67152984 None:intergenic 35.0%
! CCAAATTTGGATGCATTTTG+TGG - chr1_2:67152962-67152981 Msa0086430:CDS 35.0%
AGCTAGAGAAAGAGATAAGT+AGG - chr1_2:67153051-67153070 Msa0086430:CDS 35.0%
AGGAGAACAAGATCATATAC+TGG - chr1_2:67153071-67153090 Msa0086430:exon 35.0%
!! CTTTTAAACAGCTCTAGTAC+TGG + chr1_2:67153112-67153131 None:intergenic 35.0%
AGAGCAATTCGATTAATGCA+TGG - chr1_2:67153146-67153165 Msa0086430:five_prime_UTR 35.0%
ATGAAAGGAAATTGAGGAGG+TGG + chr1_2:67150721-67150740 None:intergenic 40.0%
AAAGAAGAGAAGGGATTGGA+TGG + chr1_2:67150808-67150827 None:intergenic 40.0%
GAATGGGTGAAAGAAGAGAA+GGG + chr1_2:67150817-67150836 None:intergenic 40.0%
TGAATGGGTGAAAGAAGAGA+AGG + chr1_2:67150818-67150837 None:intergenic 40.0%
CTCTTCTTTCACCCATTCAT+TGG - chr1_2:67150819-67150838 Msa0086430:three_prime_UTR 40.0%
ACAGAGACAAGCCAATGAAT+GGG + chr1_2:67150833-67150852 None:intergenic 40.0%
GATGAGTGGAAAATGAAGGT+TGG + chr1_2:67150862-67150881 None:intergenic 40.0%
GAGAGATGAGTGGAAAATGA+AGG + chr1_2:67150866-67150885 None:intergenic 40.0%
GTAACCTTTATTCTCCATGG+CGG - chr1_2:67150914-67150933 Msa0086430:CDS 40.0%
!! ATTGTAGGGCTTTAAGGTTG+TGG + chr1_2:67150955-67150974 None:intergenic 40.0%
!! ACAGTGTTGGGGTTGTTTTA+GGG + chr1_2:67151007-67151026 None:intergenic 40.0%
!! AACAGTGTTGGGGTTGTTTT+AGG + chr1_2:67151008-67151027 None:intergenic 40.0%
! TATGACGGAAACCTCTTAAG+GGG + chr1_2:67151037-67151056 None:intergenic 40.0%
! CTATGACGGAAACCTCTTAA+GGG + chr1_2:67151038-67151057 None:intergenic 40.0%
CTTCACCGTTTGTGTTCTAA+TGG - chr1_2:67151097-67151116 Msa0086430:intron 40.0%
CACTAACCAGATGAAAACTG+AGG - chr1_2:67151133-67151152 Msa0086430:intron 40.0%
TAGACATTACAGCTGCAACT+AGG + chr1_2:67151247-67151266 None:intergenic 40.0%
!! TAGCTTTGGTGTTACCTCTA+TGG - chr1_2:67151265-67151284 Msa0086430:intron 40.0%
AACAGCTAAGATTGCCATAG+AGG + chr1_2:67151282-67151301 None:intergenic 40.0%
TAGATTCTCATGGCAAATGG+AGG - chr1_2:67151307-67151326 Msa0086430:intron 40.0%
ACTCTGATACACACGTGATT+CGG - chr1_2:67151437-67151456 Msa0086430:intron 40.0%
! GTTCCTTGGTCTGAAATGTT+TGG - chr1_2:67151561-67151580 Msa0086430:intron 40.0%
! GTATGGAATATTGGGCTAGA+TGG - chr1_2:67151702-67151721 Msa0086430:CDS 40.0%
TATGAGAGAAGAGCAATTGC+AGG + chr1_2:67152061-67152080 None:intergenic 40.0%
GCAATTGCTCTTCTCTCATA+TGG - chr1_2:67152061-67152080 Msa0086430:intron 40.0%
GACATCCTCATCTTATGACT+AGG - chr1_2:67152259-67152278 Msa0086430:CDS 40.0%
AAGACCCTAGTCATAAGATG+AGG + chr1_2:67152267-67152286 None:intergenic 40.0%
TCATCTTATGACTAGGGTCT+TGG - chr1_2:67152266-67152285 Msa0086430:CDS 40.0%
TGACTAGGGTCTTGGAATTA+CGG - chr1_2:67152274-67152293 Msa0086430:CDS 40.0%
GTCTTGGAATTACGGTGTTT+GGG - chr1_2:67152282-67152301 Msa0086430:CDS 40.0%
TCCATCATGGACAAACATGT+AGG + chr1_2:67152312-67152331 None:intergenic 40.0%
!! CATGTTTGTCCATGATGGAT+TGG - chr1_2:67152313-67152332 Msa0086430:intron 40.0%
GTTCATAAGAGATTCCCTGT+GGG - chr1_2:67152335-67152354 Msa0086430:intron 40.0%
CTTTGAATTTGTCCGAATGG+TGG + chr1_2:67152573-67152592 None:intergenic 40.0%
CACCATTCGGACAAATTCAA+AGG - chr1_2:67152571-67152590 Msa0086430:intron 40.0%
CCATTCGGACAAATTCAAAG+GGG - chr1_2:67152573-67152592 Msa0086430:intron 40.0%
!! AAATTCAAAGGGGTGCCATA+TGG - chr1_2:67152583-67152602 Msa0086430:intron 40.0%
! GTGCCATATGGACTCTTTTT+AGG - chr1_2:67152595-67152614 Msa0086430:intron 40.0%
GGTCCTAAAAAGAGTCCATA+TGG + chr1_2:67152601-67152620 None:intergenic 40.0%
!!! TGGACTCTTTTTAGGACCAA+AGG - chr1_2:67152603-67152622 Msa0086430:intron 40.0%
AAGAAGAGGGAATGTGAATG+TGG + chr1_2:67152633-67152652 None:intergenic 40.0%
ACATTCACATTCCCTCTTCT+TGG - chr1_2:67152632-67152651 Msa0086430:intron 40.0%
CGCTAGTTGAGTAGTACTTA+TGG - chr1_2:67152841-67152860 Msa0086430:CDS 40.0%
GGTGCTAATAACACATTGCT+TGG - chr1_2:67152984-67153003 Msa0086430:CDS 40.0%
! AAATTGAGGAGGTGGTGTTG+TGG + chr1_2:67150713-67150732 None:intergenic 45.0%
AAGAGAAGGGATTGGATGGA+TGG + chr1_2:67150804-67150823 None:intergenic 45.0%
GGTGAAAGAAGAGAAGGGAT+TGG + chr1_2:67150812-67150831 None:intergenic 45.0%
GACAGAGACAAGCCAATGAA+TGG + chr1_2:67150834-67150853 None:intergenic 45.0%
GAGGAGATTGTAGGGCTTTA+AGG + chr1_2:67150961-67150980 None:intergenic 45.0%
GAGAGTTGGAGGAGATTGTA+GGG + chr1_2:67150969-67150988 None:intergenic 45.0%
TGAGAGTTGGAGGAGATTGT+AGG + chr1_2:67150970-67150989 None:intergenic 45.0%
AAGGGGAAGAAGTTGAGAGT+TGG + chr1_2:67150983-67151002 None:intergenic 45.0%
!!! TTGGGGTTGTTTTAGGGGAA+GGG + chr1_2:67151001-67151020 None:intergenic 45.0%
!!! CAGTGTTGGGGTTGTTTTAG+GGG + chr1_2:67151006-67151025 None:intergenic 45.0%
! ATGACGGAAACCTCTTAAGG+GGG + chr1_2:67151036-67151055 None:intergenic 45.0%
! GCTATGACGGAAACCTCTTA+AGG + chr1_2:67151039-67151058 None:intergenic 45.0%
TGAGGGCTGTGTTTACTGTT+AGG + chr1_2:67151173-67151192 None:intergenic 45.0%
! GCAGCTGTAATGTCTAGCTT+TGG - chr1_2:67151251-67151270 Msa0086430:intron 45.0%
! ATGATAGGGTACTAGTGGAG+AGG - chr1_2:67151539-67151558 Msa0086430:intron 45.0%
GTGCCAAACATTTCAGACCA+AGG + chr1_2:67151567-67151586 None:intergenic 45.0%
TGGGAAGACTGGTGAAGAAT+CGG + chr1_2:67151781-67151800 None:intergenic 45.0%
TCACATCATCGACCAAGAGA+GGG - chr1_2:67151992-67152011 Msa0086430:CDS 45.0%
! TTTAACAAGGGATTGGTGCC+TGG - chr1_2:67152088-67152107 Msa0086430:intron 45.0%
GGTCTTGGAATTACGGTGTT+TGG - chr1_2:67152281-67152300 Msa0086430:CDS 45.0%
GCCTACATGTTTGTCCATGA+TGG - chr1_2:67152308-67152327 Msa0086430:intron 45.0%
GGTTCATAAGAGATTCCCTG+TGG - chr1_2:67152334-67152353 Msa0086430:intron 45.0%
GCAGCAACTCTTGTGAAGTA+GGG + chr1_2:67152377-67152396 None:intergenic 45.0%
AGCAGCAACTCTTGTGAAGT+AGG + chr1_2:67152378-67152397 None:intergenic 45.0%
!! GGGATCTAATTTGGTGCCTT+TGG - chr1_2:67152526-67152545 Msa0086430:intron 45.0%
TTGTTTGCAGCTCCACCATT+CGG - chr1_2:67152558-67152577 Msa0086430:intron 45.0%
CCCCTTTGAATTTGTCCGAA+TGG + chr1_2:67152576-67152595 None:intergenic 45.0%
ATGTGAATGTGGCTGACCTT+TGG + chr1_2:67152622-67152641 None:intergenic 45.0%
AGTGTGCTCGTAGCCAAATT+TGG - chr1_2:67152949-67152968 Msa0086430:CDS 45.0%
CACATTGCTTGGCTGACATA+TGG - chr1_2:67152995-67153014 Msa0086430:CDS 45.0%
GTGCAGGAAGTTGAAGAAGT+GGG - chr1_2:67153017-67153036 Msa0086430:CDS 45.0%
AGGAAGTTGAAGAAGTGGGA+GGG - chr1_2:67153021-67153040 Msa0086430:CDS 45.0%
GAGAGAGAGAGAGAGATGAG+TGG + chr1_2:67150876-67150895 None:intergenic 50.0%
TCAGCCGCCATGGAGAATAA+AGG + chr1_2:67150921-67150940 None:intergenic 50.0%
!! GTAGGGCTTTAAGGTTGTGG+CGG + chr1_2:67150952-67150971 None:intergenic 50.0%
GGGAAGAAGTTGAGAGTTGG+AGG + chr1_2:67150980-67150999 None:intergenic 50.0%
!!! TGGGGTTGTTTTAGGGGAAG+GGG + chr1_2:67151000-67151019 None:intergenic 50.0%
!!! GTTGGGGTTGTTTTAGGGGA+AGG + chr1_2:67151002-67151021 None:intergenic 50.0%
AGGGGGTGAAGAACAGTGTT+GGG + chr1_2:67151019-67151038 None:intergenic 50.0%
AAGGGGGTGAAGAACAGTGT+TGG + chr1_2:67151020-67151039 None:intergenic 50.0%
CTGTTCTTCACCCCCTTAAG+AGG - chr1_2:67151023-67151042 Msa0086430:intron 50.0%
GGGCTGTGTTTACTGTTAGG+AGG + chr1_2:67151170-67151189 None:intergenic 50.0%
GTACTAGTGGAGAGGTTCCT+TGG - chr1_2:67151547-67151566 Msa0086430:intron 50.0%
TACAGCAGCACCAACTGAGA+GGG + chr1_2:67151595-67151614 None:intergenic 50.0%
TTACAGCAGCACCAACTGAG+AGG + chr1_2:67151596-67151615 None:intergenic 50.0%
! GATGGGCTCATGAGGTTCTA+TGG - chr1_2:67151720-67151739 Msa0086430:intron 50.0%
TTCTATGGCATGCTTCCCTG+TGG - chr1_2:67151735-67151754 Msa0086430:intron 50.0%
GTCACATCATCGACCAAGAG+AGG - chr1_2:67151991-67152010 Msa0086430:CDS 50.0%
AGCTCAAATGGTCCCTCTCT+TGG + chr1_2:67152007-67152026 None:intergenic 50.0%
AAGTAGGGCACGTTGGCAAT+GGG + chr1_2:67152362-67152381 None:intergenic 50.0%
TCTTGTGAAGTAGGGCACGT+TGG + chr1_2:67152369-67152388 None:intergenic 50.0%
GGTGCAGGAAGTTGAAGAAG+TGG - chr1_2:67153016-67153035 Msa0086430:CDS 50.0%
CAGGAAGTTGAAGAAGTGGG+AGG - chr1_2:67153020-67153039 Msa0086430:CDS 50.0%
!! TGAGGAGGTGGTGTTGTGGT+CGG + chr1_2:67150709-67150728 None:intergenic 55.0%
GGGGGTGAAGAACAGTGTTG+GGG + chr1_2:67151018-67151037 None:intergenic 55.0%
GGCACATTTGCCCTCTCAGT+TGG - chr1_2:67151582-67151601 Msa0086430:intron 55.0%
! TTGGGCTAGATGGGCTCATG+AGG - chr1_2:67151712-67151731 Msa0086430:intron 55.0%
TTCCCTGTGGCACATGCATG+AGG - chr1_2:67151748-67151767 Msa0086430:intron 55.0%
GACCTCATGCATGTGCCACA+GGG + chr1_2:67151753-67151772 None:intergenic 55.0%
AGACCTCATGCATGTGCCAC+AGG + chr1_2:67151754-67151773 None:intergenic 55.0%
! TTGGTGCCTGGTCTCTGCTT+TGG - chr1_2:67152100-67152119 Msa0086430:intron 55.0%
ACTGCACCAAAGCAGAGACC+AGG + chr1_2:67152109-67152128 None:intergenic 55.0%
GAAGTAGGGCACGTTGGCAA+TGG + chr1_2:67152363-67152382 None:intergenic 55.0%
GCTTGGCTGACATATGGTGC+AGG - chr1_2:67153001-67153020 Msa0086430:CDS 55.0%
GGTGGAAAGTTCAGCCGCCA+TGG + chr1_2:67150931-67150950 None:intergenic 60.0%
!! GGGCTTTAAGGTTGTGGCGG+TGG + chr1_2:67150949-67150968 None:intergenic 60.0%
CGTTGGCAATGGGACCCACA+GGG + chr1_2:67152352-67152371 None:intergenic 60.0%
ACGTTGGCAATGGGACCCAC+AGG + chr1_2:67152353-67152372 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67150700 67153303 67150700 ID=Msa0086430;Name=Msa0086430
chr1_2 mRNA 67150700 67153303 67150700 ID=Msa0086430-mRNA-1;Parent=Msa0086430;Name=Msa0086430-mRNA-1;_AED=0.11;_eAED=0.11;_QI=230|1|1|1|1|1|7|203|310
chr1_2 exon 67150700 67150980 67150700 ID=Msa0086430-mRNA-1:exon:22710;Parent=Msa0086430-mRNA-1
chr1_2 exon 67151379 67151435 67151379 ID=Msa0086430-mRNA-1:exon:22709;Parent=Msa0086430-mRNA-1
chr1_2 exon 67151597 67151722 67151597 ID=Msa0086430-mRNA-1:exon:22708;Parent=Msa0086430-mRNA-1
chr1_2 exon 67151877 67152011 67151877 ID=Msa0086430-mRNA-1:exon:22707;Parent=Msa0086430-mRNA-1
chr1_2 exon 67152234 67152305 67152234 ID=Msa0086430-mRNA-1:exon:22706;Parent=Msa0086430-mRNA-1
chr1_2 exon 67152392 67152457 67152392 ID=Msa0086430-mRNA-1:exon:22705;Parent=Msa0086430-mRNA-1
chr1_2 exon 67152675 67153303 67152675 ID=Msa0086430-mRNA-1:exon:22704;Parent=Msa0086430-mRNA-1
chr1_2 five_prime_UTR 67153074 67153303 67153074 ID=Msa0086430-mRNA-1:five_prime_utr;Parent=Msa0086430-mRNA-1
chr1_2 CDS 67152675 67153073 67152675 ID=Msa0086430-mRNA-1:cds;Parent=Msa0086430-mRNA-1
chr1_2 CDS 67152392 67152457 67152392 ID=Msa0086430-mRNA-1:cds;Parent=Msa0086430-mRNA-1
chr1_2 CDS 67152234 67152305 67152234 ID=Msa0086430-mRNA-1:cds;Parent=Msa0086430-mRNA-1
chr1_2 CDS 67151877 67152011 67151877 ID=Msa0086430-mRNA-1:cds;Parent=Msa0086430-mRNA-1
chr1_2 CDS 67151597 67151722 67151597 ID=Msa0086430-mRNA-1:cds;Parent=Msa0086430-mRNA-1
chr1_2 CDS 67151379 67151435 67151379 ID=Msa0086430-mRNA-1:cds;Parent=Msa0086430-mRNA-1
chr1_2 CDS 67150903 67150980 67150903 ID=Msa0086430-mRNA-1:cds;Parent=Msa0086430-mRNA-1
chr1_2 three_prime_UTR 67150700 67150902 67150700 ID=Msa0086430-mRNA-1:three_prime_utr;Parent=Msa0086430-mRNA-1
Gene Sequence

>Msa0086430

ATGGCGGCTGAACTTTCCACCGCCACAACCTTAAAGCCCTACAATCTCCTCCAACTCTCAACTTCTTCCCCTTCCCCTAAAACAACCCCAACACTGTTCTTCACCCCCTTAAGAGGTTTCCGTCATAGCAAAATCCTTCAAACCCAAAGAACAAGAAAATCAACACGCTTCACCGTTTGTGTTCTAATGGAAGATCCAAAACACACTAACCAGATGAAAACTGAGGAAGAAATAGAACCTCCTAACAGTAAACACAGCCCTCAATTTTTAGTTGCACAAAAATTGGCGAGAAAGAAGTCTCAAAGATTCACTTACCTAGTTGCAGCTGTAATGTCTAGCTTTGGTGTTACCTCTATGGCAATCTTAGCTGTTTATTATAGATTCTCATGGCAAATGGAGGGTACTAGTGGAGAGGTTCCTTGGTCTGAAATGTTTGGCACATTTGCCCTCTCAGTTGGTGCTGCTGTAGGTATGGAATATTGGGCTAGATGGGCTCATGAGGTTCTATGGCATGCTTCCCTGTGGCACATGCATGAGTCACATCATCGACCAAGAGAGGGACCATTTGAGCTTAATGATGTTTTCGCTATAATCAACGCTGTTCCTGCAATTGCTCTTCTCTCATATGGTTTTTTTAACAAGGGATTGGTGCCTGGTCTCTGCTTTGGTGCAGGTCTTGGAATTACGGTGTTTGGGATTGCCTACATGTTTGTCCATGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCACAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAAAGGGGTGCCATATGGACTCTTTTTAGGACCAAAGGAAGTTGAAGAAGTGGGAGGGATAGAAGAGCTAGAGAAAGAGATAAGTAGGAGAACAAGATCATATACTGGCTCATGA

Protein sequence

>Msa0086430

MAAELSTATTLKPYNLLQLSTSSPSPKTTPTLFFTPLRGFRHSKILQTQRTRKSTRFTVCVLMEDPKHTNQMKTEEEIEPPNSKHSPQFLVAQKLARKKSQRFTYLVAAVMSSFGVTSMAILAVYYRFSWQMEGTSGEVPWSEMFGTFALSVGAAVGMEYWARWAHEVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFTRVAAAHQLHHSDKFKGVPYGLFLGPKEVEEVGGIEELEKEISRRTRSYTGS*