AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0982230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0982230 MtrunA17_Chr6g0463001 97.059 238 7 0 1 238 1 238 2.90e-171 471
Msa0982230 MtrunA17_Chr6g0462991 77.731 238 34 3 1 238 1 219 3.66e-118 336
Msa0982230 MtrunA17_Chr1g0202361 64.135 237 65 9 1 236 41 258 1.77e-82 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0982230 AT5G52900.1 40.891 247 115 12 2 236 7 234 2.16e-34 123

Find 70 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGTTGTTCAACTGATTT+TGG 0.056468 6_4:+21847085 Msa0982230:three_prime_UTR
TCAAGCTTTGCCATCAAATT+TGG 0.083163 6_4:+21846965 Msa0982230:three_prime_UTR
CTACTAGTGATGATGGTTTA+AGG 0.126697 6_4:-21845951 None:intergenic
TGCCGTCGCTGTCTAATTTA+TGG 0.150681 6_4:-21846759 None:intergenic
TTGAACAACTTCGCTGATTT+TGG 0.166089 6_4:-21847075 None:intergenic
GCTTCTTCTATCTTACTCTT+TGG 0.194146 6_4:-21845871 None:intergenic
AGCATGCCATATATCAATTT+TGG 0.195468 6_4:-21847178 None:intergenic
ATATGTATACTTATTTCTTA+TGG 0.213816 6_4:-21846925 None:intergenic
CTTCTAGAAGATGGCATTCT+TGG 0.216433 6_4:-21846048 None:intergenic
GCATATCAAGGTTATGAAAA+AGG 0.264436 6_4:+21846729 Msa0982230:three_prime_UTR
TTTATTTGTTACATGTGATA+TGG 0.284843 6_4:-21846274 None:intergenic
AGCTTCTTCCTTCATTGAAA+TGG 0.311354 6_4:+21846023 Msa0982230:CDS
GATTCACCAAAATTGATATA+TGG 0.315311 6_4:+21847172 Msa0982230:three_prime_UTR
CCTCAATTGTGTTCGTGTTA+TGG 0.317849 6_4:-21846803 None:intergenic
TTCAATGATTCAACAAATAA+TGG 0.323139 6_4:-21846180 None:intergenic
AAGAATATTAGAGGAAATTA+TGG 0.323873 6_4:+21846465 Msa0982230:CDS
CAAGCTTTGCCATCAAATTT+GGG 0.330789 6_4:+21846966 Msa0982230:three_prime_UTR
AGTGAGAGGGGATTGTTGTA+AGG 0.366132 6_4:-21846112 None:intergenic
GAATATGCAACACTAATTCT+TGG 0.384978 6_4:-21846498 None:intergenic
ATTCAACAAATAATGGCATT+AGG 0.397396 6_4:-21846173 None:intergenic
TTTGATGAATCATATTCATA+TGG 0.399205 6_4:-21846210 None:intergenic
CAATCAGTGAAGAATATTAG+AGG 0.410239 6_4:+21846456 Msa0982230:CDS
TCACTAGTAGAAAGCCTTGA+TGG 0.413442 6_4:+21845964 Msa0982230:CDS
TTGCATATTCCGCGGATGAT+TGG 0.414207 6_4:+21846511 Msa0982230:CDS
AGAGGGGATTGTTGTAAGGT+TGG 0.430996 6_4:-21846108 None:intergenic
CAAGAAGCCCTTCATTGAAA+AGG 0.435742 6_4:+21846316 Msa0982230:CDS
ATGAATCTTTGAAGATAACT+TGG 0.435778 6_4:-21845848 None:intergenic
GCCTTTGTGTAGAAGATTGA+GGG 0.450787 6_4:+21846389 Msa0982230:CDS
AGGCTTTCTACTAGTGATGA+TGG 0.454755 6_4:-21845958 None:intergenic
TGGAAAGTGTGAGGGAAAGA+AGG 0.460669 6_4:-21845828 None:intergenic
GAAATAAGTATACATATGAT+TGG 0.461396 6_4:+21846931 Msa0982230:three_prime_UTR
ATTTCTTATGGATACTCCAT+TGG 0.465723 6_4:-21846913 None:intergenic
TCTTGGATCCATTTCAATGA+AGG 0.466142 6_4:-21846031 None:intergenic
TGTTTACATTAAATGAGAAT+CGG 0.468522 6_4:+21847048 Msa0982230:three_prime_UTR
CATATTCCGCGGATGATTGG+CGG 0.479193 6_4:+21846514 Msa0982230:CDS
CTTCATTGCAAAAGATCCAT+TGG 0.491601 6_4:+21846579 Msa0982230:CDS
AAGTGTCAGTGTCGTGTCAC+CGG 0.493765 6_4:-21847243 None:intergenic
GCACGGACACTCCTCGGATT+AGG 0.500151 6_4:+21847214 Msa0982230:three_prime_UTR
GGCCTTTGTGTAGAAGATTG+AGG 0.502821 6_4:+21846388 Msa0982230:CDS
GAGTAAGATAGAAGAAGCCA+TGG 0.511798 6_4:+21845876 Msa0982230:exon
TAATGGCATTAGGTAACCAT+TGG 0.512546 6_4:-21846163 None:intergenic
ATCACATGTAACAAATAAAG+TGG 0.516247 6_4:+21846278 Msa0982230:CDS
TTCATCAGAAGAATCAAGAT+AGG 0.516867 6_4:-21846001 None:intergenic
TCCTCGGATTAGGCGTGTCC+CGG 0.522359 6_4:+21847224 Msa0982230:three_prime_UTR
GGAAAGTGTGAGGGAAAGAA+GGG 0.527768 6_4:-21845827 None:intergenic
CATTGGTCTTGTCTGCACCA+TGG 0.530971 6_4:-21846896 None:intergenic
GCATGTTAGAGTGCATATCA+AGG 0.534911 6_4:+21846717 Msa0982230:three_prime_UTR
ATGTGATATGGAAGAAGCTA+AGG 0.537039 6_4:-21846262 None:intergenic
TATGAAGCACGGACACTCCT+CGG 0.547584 6_4:+21847208 Msa0982230:three_prime_UTR
GAGAGGATGAGATGTTTCCA+TGG 0.551109 6_4:-21845893 None:intergenic
AAGATAACTTGGAAAGTGTG+AGG 0.569745 6_4:-21845837 None:intergenic
TTCTAAAAGAAGAACCATCA+AGG 0.577711 6_4:-21845978 None:intergenic
CCATAACACGAACACAATTG+AGG 0.577961 6_4:+21846803 Msa0982230:three_prime_UTR
AAAGGTGTAGAACATTATCA+AGG 0.580857 6_4:+21846334 Msa0982230:CDS
AGTGTCAGTGTCGTGTCACC+GGG 0.591978 6_4:-21847242 None:intergenic
TGCTTTCAATCTATGAAGCA+CGG 0.597624 6_4:+21847197 Msa0982230:three_prime_UTR
AGATAACTTGGAAAGTGTGA+GGG 0.605881 6_4:-21845836 None:intergenic
CATCAACAAGAGTAGTGAGA+GGG 0.614657 6_4:-21846125 None:intergenic
GGGCTTCTTGAATCTTCTCG+AGG 0.622817 6_4:-21846303 None:intergenic
AATTAGTGTTGCATATTCCG+CGG 0.626302 6_4:+21846503 Msa0982230:CDS
ACCGGGACACGCCTAATCCG+AGG 0.629910 6_4:-21847225 None:intergenic
CATGGTGCAGACAAGACCAA+TGG 0.637604 6_4:+21846897 Msa0982230:three_prime_UTR
AAATGAGTTGAAGATAGCAA+AGG 0.638354 6_4:-21845799 None:intergenic
AAGTATACATATGATTGGTG+AGG 0.653104 6_4:+21846936 Msa0982230:three_prime_UTR
GCGACTGCAATTCAAAACCA+TGG 0.655668 6_4:+21846879 Msa0982230:three_prime_UTR
GCATCAACAAGAGTAGTGAG+AGG 0.665674 6_4:-21846126 None:intergenic
CCCCTCAATCTTCTACACAA+AGG 0.666242 6_4:-21846390 None:intergenic
GACCATAAATTAGACAGCGA+CGG 0.675229 6_4:+21846757 Msa0982230:three_prime_UTR
CCTTTGTGTAGAAGATTGAG+GGG 0.676588 6_4:+21846390 Msa0982230:CDS
ATCAACAAGAGTAGTGAGAG+GGG 0.692218 6_4:-21846124 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTATTTGAAATTTTTA+AGG + chr6_4:21846367-21846386 Msa0982230:CDS 10.0%
!!! AAAAGTATTTGAAATTTTTA+AGG + chr6_4:21846367-21846386 Msa0982230:CDS 10.0%
!!! TTTTTTTTTTTACATACCAA+TGG - chr6_4:21846598-21846617 None:intergenic 15.0%
!!! ATATGTATACTTATTTCTTA+TGG - chr6_4:21846928-21846947 None:intergenic 15.0%
!!! TTTTTTTTTTTACATACCAA+TGG - chr6_4:21846598-21846617 None:intergenic 15.0%
!!! ATATGTATACTTATTTCTTA+TGG - chr6_4:21846928-21846947 None:intergenic 15.0%
!!! TAGAAAGTTTTTCATATAGT+TGG + chr6_4:21845920-21845939 Msa0982230:CDS 20.0%
!!! ATAAAAAATCTTCTAGAAGA+TGG - chr6_4:21846060-21846079 None:intergenic 20.0%
!! TTCAATGATTCAACAAATAA+TGG - chr6_4:21846183-21846202 None:intergenic 20.0%
!! TTTGATGAATCATATTCATA+TGG - chr6_4:21846213-21846232 None:intergenic 20.0%
!!! TTTATTTGTTACATGTGATA+TGG - chr6_4:21846277-21846296 None:intergenic 20.0%
!! AAGAATATTAGAGGAAATTA+TGG + chr6_4:21846465-21846484 Msa0982230:CDS 20.0%
!!! CAATTATTTTGATACTAACA+TGG + chr6_4:21846659-21846678 Msa0982230:intron 20.0%
!! GAAATAAGTATACATATGAT+TGG + chr6_4:21846931-21846950 Msa0982230:three_prime_UTR 20.0%
!! TGTTTACATTAAATGAGAAT+CGG + chr6_4:21847048-21847067 Msa0982230:three_prime_UTR 20.0%
!!! ATATATCAATTTTGGTGAAT+CGG - chr6_4:21847173-21847192 None:intergenic 20.0%
!!! TAGAAAGTTTTTCATATAGT+TGG + chr6_4:21845920-21845939 Msa0982230:CDS 20.0%
!!! ATAAAAAATCTTCTAGAAGA+TGG - chr6_4:21846060-21846079 None:intergenic 20.0%
!! TTCAATGATTCAACAAATAA+TGG - chr6_4:21846183-21846202 None:intergenic 20.0%
!! TTTGATGAATCATATTCATA+TGG - chr6_4:21846213-21846232 None:intergenic 20.0%
!!! TTTATTTGTTACATGTGATA+TGG - chr6_4:21846277-21846296 None:intergenic 20.0%
!! AAGAATATTAGAGGAAATTA+TGG + chr6_4:21846465-21846484 Msa0982230:CDS 20.0%
!!! CAATTATTTTGATACTAACA+TGG + chr6_4:21846659-21846678 Msa0982230:intron 20.0%
!! GAAATAAGTATACATATGAT+TGG + chr6_4:21846931-21846950 Msa0982230:three_prime_UTR 20.0%
!! TGTTTACATTAAATGAGAAT+CGG + chr6_4:21847048-21847067 Msa0982230:three_prime_UTR 20.0%
!!! ATATATCAATTTTGGTGAAT+CGG - chr6_4:21847173-21847192 None:intergenic 20.0%
!! ATGAATCTTTGAAGATAACT+TGG - chr6_4:21845851-21845870 None:intergenic 25.0%
! ATTCAACAAATAATGGCATT+AGG - chr6_4:21846176-21846195 None:intergenic 25.0%
! ATCACATGTAACAAATAAAG+TGG + chr6_4:21846278-21846297 Msa0982230:CDS 25.0%
!! TTTTCTTTTCCCAAATTTGA+TGG - chr6_4:21846978-21846997 None:intergenic 25.0%
! GATTCACCAAAATTGATATA+TGG + chr6_4:21847172-21847191 Msa0982230:three_prime_UTR 25.0%
!! ATGAATCTTTGAAGATAACT+TGG - chr6_4:21845851-21845870 None:intergenic 25.0%
! ATTCAACAAATAATGGCATT+AGG - chr6_4:21846176-21846195 None:intergenic 25.0%
! ATCACATGTAACAAATAAAG+TGG + chr6_4:21846278-21846297 Msa0982230:CDS 25.0%
!! TTTTCTTTTCCCAAATTTGA+TGG - chr6_4:21846978-21846997 None:intergenic 25.0%
! GATTCACCAAAATTGATATA+TGG + chr6_4:21847172-21847191 Msa0982230:three_prime_UTR 25.0%
! AAATGAGTTGAAGATAGCAA+AGG - chr6_4:21845802-21845821 None:intergenic 30.0%
GAAAAACTTTCTATTGAGAG+AGG - chr6_4:21845913-21845932 None:intergenic 30.0%
! TTCTAAAAGAAGAACCATCA+AGG - chr6_4:21845981-21846000 None:intergenic 30.0%
TTCATCAGAAGAATCAAGAT+AGG - chr6_4:21846004-21846023 None:intergenic 30.0%
! TTCTACACCTTTTCAATGAA+GGG - chr6_4:21846326-21846345 None:intergenic 30.0%
! AAAGGTGTAGAACATTATCA+AGG + chr6_4:21846334-21846353 Msa0982230:CDS 30.0%
CAATCAGTGAAGAATATTAG+AGG + chr6_4:21846456-21846475 Msa0982230:CDS 30.0%
GAATATGCAACACTAATTCT+TGG - chr6_4:21846501-21846520 None:intergenic 30.0%
CTACTATCTATTAAGACACA+TGG - chr6_4:21846630-21846649 None:intergenic 30.0%
GCATATCAAGGTTATGAAAA+AGG + chr6_4:21846729-21846748 Msa0982230:three_prime_UTR 30.0%
TAGACATGCACGAAAAATTT+CGG - chr6_4:21846848-21846867 None:intergenic 30.0%
ATTTCTTATGGATACTCCAT+TGG - chr6_4:21846916-21846935 None:intergenic 30.0%
AAGTATACATATGATTGGTG+AGG + chr6_4:21846936-21846955 Msa0982230:three_prime_UTR 30.0%
!! GAAGTTGTTCAACTGATTTT+GGG + chr6_4:21847086-21847105 Msa0982230:three_prime_UTR 30.0%
! TTTTGGTGAATCGGAAATAA+CGG - chr6_4:21847164-21847183 None:intergenic 30.0%
! AGCATGCCATATATCAATTT+TGG - chr6_4:21847181-21847200 None:intergenic 30.0%
! AAATGAGTTGAAGATAGCAA+AGG - chr6_4:21845802-21845821 None:intergenic 30.0%
GAAAAACTTTCTATTGAGAG+AGG - chr6_4:21845913-21845932 None:intergenic 30.0%
! TTCTAAAAGAAGAACCATCA+AGG - chr6_4:21845981-21846000 None:intergenic 30.0%
TTCATCAGAAGAATCAAGAT+AGG - chr6_4:21846004-21846023 None:intergenic 30.0%
! TTCTACACCTTTTCAATGAA+GGG - chr6_4:21846326-21846345 None:intergenic 30.0%
! AAAGGTGTAGAACATTATCA+AGG + chr6_4:21846334-21846353 Msa0982230:CDS 30.0%
CAATCAGTGAAGAATATTAG+AGG + chr6_4:21846456-21846475 Msa0982230:CDS 30.0%
GAATATGCAACACTAATTCT+TGG - chr6_4:21846501-21846520 None:intergenic 30.0%
CTACTATCTATTAAGACACA+TGG - chr6_4:21846630-21846649 None:intergenic 30.0%
GCATATCAAGGTTATGAAAA+AGG + chr6_4:21846729-21846748 Msa0982230:three_prime_UTR 30.0%
TAGACATGCACGAAAAATTT+CGG - chr6_4:21846848-21846867 None:intergenic 30.0%
ATTTCTTATGGATACTCCAT+TGG - chr6_4:21846916-21846935 None:intergenic 30.0%
AAGTATACATATGATTGGTG+AGG + chr6_4:21846936-21846955 Msa0982230:three_prime_UTR 30.0%
!! GAAGTTGTTCAACTGATTTT+GGG + chr6_4:21847086-21847105 Msa0982230:three_prime_UTR 30.0%
! TTTTGGTGAATCGGAAATAA+CGG - chr6_4:21847164-21847183 None:intergenic 30.0%
! AGCATGCCATATATCAATTT+TGG - chr6_4:21847181-21847200 None:intergenic 30.0%
! AGATAACTTGGAAAGTGTGA+GGG - chr6_4:21845839-21845858 None:intergenic 35.0%
! AAGATAACTTGGAAAGTGTG+AGG - chr6_4:21845840-21845859 None:intergenic 35.0%
GCTTCTTCTATCTTACTCTT+TGG - chr6_4:21845874-21845893 None:intergenic 35.0%
!! CTACTAGTGATGATGGTTTA+AGG - chr6_4:21845954-21845973 None:intergenic 35.0%
AGCTTCTTCCTTCATTGAAA+TGG + chr6_4:21846023-21846042 Msa0982230:CDS 35.0%
TCTTGGATCCATTTCAATGA+AGG - chr6_4:21846034-21846053 None:intergenic 35.0%
TAATGGCATTAGGTAACCAT+TGG - chr6_4:21846166-21846185 None:intergenic 35.0%
ATGTGATATGGAAGAAGCTA+AGG - chr6_4:21846265-21846284 None:intergenic 35.0%
! GTTCTACACCTTTTCAATGA+AGG - chr6_4:21846327-21846346 None:intergenic 35.0%
AATTAGTGTTGCATATTCCG+CGG + chr6_4:21846503-21846522 Msa0982230:CDS 35.0%
CTTCATTGCAAAAGATCCAT+TGG + chr6_4:21846579-21846598 Msa0982230:CDS 35.0%
TCAAGCTTTGCCATCAAATT+TGG + chr6_4:21846965-21846984 Msa0982230:three_prime_UTR 35.0%
CAAGCTTTGCCATCAAATTT+GGG + chr6_4:21846966-21846985 Msa0982230:three_prime_UTR 35.0%
!!! TTGAACAACTTCGCTGATTT+TGG - chr6_4:21847078-21847097 None:intergenic 35.0%
!! CGAAGTTGTTCAACTGATTT+TGG + chr6_4:21847085-21847104 Msa0982230:three_prime_UTR 35.0%
!!! TGTTCAACTGATTTTGGGAT+TGG + chr6_4:21847091-21847110 Msa0982230:three_prime_UTR 35.0%
TGCTTTCAATCTATGAAGCA+CGG + chr6_4:21847197-21847216 Msa0982230:three_prime_UTR 35.0%
! AGATAACTTGGAAAGTGTGA+GGG - chr6_4:21845839-21845858 None:intergenic 35.0%
! AAGATAACTTGGAAAGTGTG+AGG - chr6_4:21845840-21845859 None:intergenic 35.0%
GCTTCTTCTATCTTACTCTT+TGG - chr6_4:21845874-21845893 None:intergenic 35.0%
!! CTACTAGTGATGATGGTTTA+AGG - chr6_4:21845954-21845973 None:intergenic 35.0%
AGCTTCTTCCTTCATTGAAA+TGG + chr6_4:21846023-21846042 Msa0982230:CDS 35.0%
TCTTGGATCCATTTCAATGA+AGG - chr6_4:21846034-21846053 None:intergenic 35.0%
TAATGGCATTAGGTAACCAT+TGG - chr6_4:21846166-21846185 None:intergenic 35.0%
ATGTGATATGGAAGAAGCTA+AGG - chr6_4:21846265-21846284 None:intergenic 35.0%
! GTTCTACACCTTTTCAATGA+AGG - chr6_4:21846327-21846346 None:intergenic 35.0%
AATTAGTGTTGCATATTCCG+CGG + chr6_4:21846503-21846522 Msa0982230:CDS 35.0%
CTTCATTGCAAAAGATCCAT+TGG + chr6_4:21846579-21846598 Msa0982230:CDS 35.0%
TCAAGCTTTGCCATCAAATT+TGG + chr6_4:21846965-21846984 Msa0982230:three_prime_UTR 35.0%
CAAGCTTTGCCATCAAATTT+GGG + chr6_4:21846966-21846985 Msa0982230:three_prime_UTR 35.0%
!!! TTGAACAACTTCGCTGATTT+TGG - chr6_4:21847078-21847097 None:intergenic 35.0%
!! CGAAGTTGTTCAACTGATTT+TGG + chr6_4:21847085-21847104 Msa0982230:three_prime_UTR 35.0%
!!! TGTTCAACTGATTTTGGGAT+TGG + chr6_4:21847091-21847110 Msa0982230:three_prime_UTR 35.0%
TGCTTTCAATCTATGAAGCA+CGG + chr6_4:21847197-21847216 Msa0982230:three_prime_UTR 35.0%
GAGTAAGATAGAAGAAGCCA+TGG + chr6_4:21845876-21845895 Msa0982230:exon 40.0%
AGGCTTTCTACTAGTGATGA+TGG - chr6_4:21845961-21845980 None:intergenic 40.0%
TCACTAGTAGAAAGCCTTGA+TGG + chr6_4:21845964-21845983 Msa0982230:CDS 40.0%
! CTTCTAGAAGATGGCATTCT+TGG - chr6_4:21846051-21846070 None:intergenic 40.0%
ATCAACAAGAGTAGTGAGAG+GGG - chr6_4:21846127-21846146 None:intergenic 40.0%
CATCAACAAGAGTAGTGAGA+GGG - chr6_4:21846128-21846147 None:intergenic 40.0%
! GCAGATCAACTCTTTTCCAA+TGG + chr6_4:21846147-21846166 Msa0982230:CDS 40.0%
CAAGAAGCCCTTCATTGAAA+AGG + chr6_4:21846316-21846335 Msa0982230:CDS 40.0%
GCCTTTGTGTAGAAGATTGA+GGG + chr6_4:21846389-21846408 Msa0982230:CDS 40.0%
CCTTTGTGTAGAAGATTGAG+GGG + chr6_4:21846390-21846409 Msa0982230:CDS 40.0%
AGATTGAGGGGTCAAAAATC+AGG + chr6_4:21846402-21846421 Msa0982230:CDS 40.0%
GCATGTTAGAGTGCATATCA+AGG + chr6_4:21846717-21846736 Msa0982230:three_prime_UTR 40.0%
GACCATAAATTAGACAGCGA+CGG + chr6_4:21846757-21846776 Msa0982230:three_prime_UTR 40.0%
CCTCAATTGTGTTCGTGTTA+TGG - chr6_4:21846806-21846825 None:intergenic 40.0%
CCATAACACGAACACAATTG+AGG + chr6_4:21846803-21846822 Msa0982230:three_prime_UTR 40.0%
!!! ACAACTTCGCTGATTTTGGA+AGG - chr6_4:21847074-21847093 None:intergenic 40.0%
GAGTAAGATAGAAGAAGCCA+TGG + chr6_4:21845876-21845895 Msa0982230:exon 40.0%
AGGCTTTCTACTAGTGATGA+TGG - chr6_4:21845961-21845980 None:intergenic 40.0%
TCACTAGTAGAAAGCCTTGA+TGG + chr6_4:21845964-21845983 Msa0982230:CDS 40.0%
! CTTCTAGAAGATGGCATTCT+TGG - chr6_4:21846051-21846070 None:intergenic 40.0%
ATCAACAAGAGTAGTGAGAG+GGG - chr6_4:21846127-21846146 None:intergenic 40.0%
CATCAACAAGAGTAGTGAGA+GGG - chr6_4:21846128-21846147 None:intergenic 40.0%
! GCAGATCAACTCTTTTCCAA+TGG + chr6_4:21846147-21846166 Msa0982230:CDS 40.0%
CAAGAAGCCCTTCATTGAAA+AGG + chr6_4:21846316-21846335 Msa0982230:CDS 40.0%
GCCTTTGTGTAGAAGATTGA+GGG + chr6_4:21846389-21846408 Msa0982230:CDS 40.0%
CCTTTGTGTAGAAGATTGAG+GGG + chr6_4:21846390-21846409 Msa0982230:CDS 40.0%
AGATTGAGGGGTCAAAAATC+AGG + chr6_4:21846402-21846421 Msa0982230:CDS 40.0%
GCATGTTAGAGTGCATATCA+AGG + chr6_4:21846717-21846736 Msa0982230:three_prime_UTR 40.0%
GACCATAAATTAGACAGCGA+CGG + chr6_4:21846757-21846776 Msa0982230:three_prime_UTR 40.0%
CCTCAATTGTGTTCGTGTTA+TGG - chr6_4:21846806-21846825 None:intergenic 40.0%
CCATAACACGAACACAATTG+AGG + chr6_4:21846803-21846822 Msa0982230:three_prime_UTR 40.0%
!!! ACAACTTCGCTGATTTTGGA+AGG - chr6_4:21847074-21847093 None:intergenic 40.0%
! GGAAAGTGTGAGGGAAAGAA+GGG - chr6_4:21845830-21845849 None:intergenic 45.0%
! TGGAAAGTGTGAGGGAAAGA+AGG - chr6_4:21845831-21845850 None:intergenic 45.0%
GAGAGGATGAGATGTTTCCA+TGG - chr6_4:21845896-21845915 None:intergenic 45.0%
AGAGGGGATTGTTGTAAGGT+TGG - chr6_4:21846111-21846130 None:intergenic 45.0%
AGTGAGAGGGGATTGTTGTA+AGG - chr6_4:21846115-21846134 None:intergenic 45.0%
GCATCAACAAGAGTAGTGAG+AGG - chr6_4:21846129-21846148 None:intergenic 45.0%
GGCCTTTGTGTAGAAGATTG+AGG + chr6_4:21846388-21846407 Msa0982230:CDS 45.0%
CCCCTCAATCTTCTACACAA+AGG - chr6_4:21846393-21846412 None:intergenic 45.0%
TTGCATATTCCGCGGATGAT+TGG + chr6_4:21846511-21846530 Msa0982230:CDS 45.0%
TGCCGTCGCTGTCTAATTTA+TGG - chr6_4:21846762-21846781 None:intergenic 45.0%
GCGACTGCAATTCAAAACCA+TGG + chr6_4:21846879-21846898 Msa0982230:three_prime_UTR 45.0%
! GGAAAGTGTGAGGGAAAGAA+GGG - chr6_4:21845830-21845849 None:intergenic 45.0%
! TGGAAAGTGTGAGGGAAAGA+AGG - chr6_4:21845831-21845850 None:intergenic 45.0%
GAGAGGATGAGATGTTTCCA+TGG - chr6_4:21845896-21845915 None:intergenic 45.0%
AGAGGGGATTGTTGTAAGGT+TGG - chr6_4:21846111-21846130 None:intergenic 45.0%
AGTGAGAGGGGATTGTTGTA+AGG - chr6_4:21846115-21846134 None:intergenic 45.0%
GCATCAACAAGAGTAGTGAG+AGG - chr6_4:21846129-21846148 None:intergenic 45.0%
GGCCTTTGTGTAGAAGATTG+AGG + chr6_4:21846388-21846407 Msa0982230:CDS 45.0%
CCCCTCAATCTTCTACACAA+AGG - chr6_4:21846393-21846412 None:intergenic 45.0%
TTGCATATTCCGCGGATGAT+TGG + chr6_4:21846511-21846530 Msa0982230:CDS 45.0%
TGCCGTCGCTGTCTAATTTA+TGG - chr6_4:21846762-21846781 None:intergenic 45.0%
GCGACTGCAATTCAAAACCA+TGG + chr6_4:21846879-21846898 Msa0982230:three_prime_UTR 45.0%
GGGCTTCTTGAATCTTCTCG+AGG - chr6_4:21846306-21846325 None:intergenic 50.0%
CATATTCCGCGGATGATTGG+CGG + chr6_4:21846514-21846533 Msa0982230:CDS 50.0%
!! CATTGGTCTTGTCTGCACCA+TGG - chr6_4:21846899-21846918 None:intergenic 50.0%
CATGGTGCAGACAAGACCAA+TGG + chr6_4:21846897-21846916 Msa0982230:three_prime_UTR 50.0%
TATGAAGCACGGACACTCCT+CGG + chr6_4:21847208-21847227 Msa0982230:three_prime_UTR 50.0%
AAGTGTCAGTGTCGTGTCAC+CGG - chr6_4:21847246-21847265 None:intergenic 50.0%
GGGCTTCTTGAATCTTCTCG+AGG - chr6_4:21846306-21846325 None:intergenic 50.0%
CATATTCCGCGGATGATTGG+CGG + chr6_4:21846514-21846533 Msa0982230:CDS 50.0%
!! CATTGGTCTTGTCTGCACCA+TGG - chr6_4:21846899-21846918 None:intergenic 50.0%
CATGGTGCAGACAAGACCAA+TGG + chr6_4:21846897-21846916 Msa0982230:three_prime_UTR 50.0%
TATGAAGCACGGACACTCCT+CGG + chr6_4:21847208-21847227 Msa0982230:three_prime_UTR 50.0%
AAGTGTCAGTGTCGTGTCAC+CGG - chr6_4:21847246-21847265 None:intergenic 50.0%
AGTGTCAGTGTCGTGTCACC+GGG - chr6_4:21847245-21847264 None:intergenic 55.0%
GGTGACACGACACTGACACT+TGG + chr6_4:21847245-21847264 Msa0982230:three_prime_UTR 55.0%
AGTGTCAGTGTCGTGTCACC+GGG - chr6_4:21847245-21847264 None:intergenic 55.0%
GCACGGACACTCCTCGGATT+AGG + chr6_4:21847214-21847233 Msa0982230:three_prime_UTR 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr6_4:21847224-21847243 Msa0982230:three_prime_UTR 60.0%
GCACGGACACTCCTCGGATT+AGG + chr6_4:21847214-21847233 Msa0982230:three_prime_UTR 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr6_4:21847224-21847243 Msa0982230:three_prime_UTR 60.0%
ACCGGGACACGCCTAATCCG+AGG - chr6_4:21847228-21847247 None:intergenic 65.0%
ACCGGGACACGCCTAATCCG+AGG - chr6_4:21847228-21847247 None:intergenic 65.0%
CACGCGCCGCCAATCATCCG+CGG - chr6_4:21846523-21846542 None:intergenic 70.0%
CACGCGCCGCCAATCATCCG+CGG - chr6_4:21846523-21846542 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 21845783 21847266 21845783 ID=Msa0982230;Name=Msa0982230
chr6_4 mRNA 21845783 21847266 21845783 ID=Msa0982230-mRNA-1;Parent=Msa0982230;Name=Msa0982230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=112|1|1|1|0|0.5|2|550|238
chr6_4 exon 21845783 21846600 21845783 ID=Msa0982230-mRNA-1:exon:6803;Parent=Msa0982230-mRNA-1
chr6_4 exon 21846706 21847266 21846706 ID=Msa0982230-mRNA-1:exon:6804;Parent=Msa0982230-mRNA-1
chr6_4 five_prime_UTR 21845783 21845894 21845783 ID=Msa0982230-mRNA-1:five_prime_utr;Parent=Msa0982230-mRNA-1
chr6_4 CDS 21845895 21846600 21845895 ID=Msa0982230-mRNA-1:cds;Parent=Msa0982230-mRNA-1
chr6_4 CDS 21846706 21846716 21846706 ID=Msa0982230-mRNA-1:cds;Parent=Msa0982230-mRNA-1
chr6_4 three_prime_UTR 21846717 21847266 21846717 ID=Msa0982230-mRNA-1:three_prime_utr;Parent=Msa0982230-mRNA-1
Gene Sequence

>Msa0982230

ATGGAAACATCTCATCCTCTCTCAATAGAAAGTTTTTCATATAGTTGGTTAGTAAACCTTAAACCATCATCACTAGTAGAAAGCCTTGATGGTTCTTCTTTTAGAACCTATCTTGATTCTTCTGATGAAGCTTCTTCCTTCATTGAAATGGATCCAAGAATGCCATCTTCTAGAAGATTTTTTATAAACTCACAAGATTTAAAATTTGACTTTCCAACCTTACAACAATCCCCTCTCACTACTCTTGTTGATGCAGATCAACTCTTTTCCAATGGTTACCTAATGCCATTATTTGTTGAATCATTGAATATAGAACCATATGAATATGATTCATCAAATTCTAATTCAAATTCAGATTCAAATTCAACCTTAGCTTCTTCCATATCACATGTAACAAATAAAGTGGTTCCTCGAGAAGATTCAAGAAGCCCTTCATTGAAAAGGTGTAGAACATTATCAAGGAGCATGTTTCAAAAGTATTTGAAATTTTTAAGGCCTTTGTGTAGAAGATTGAGGGGTCAAAAATCAGGATCAAAACATGAAAATGTTGTGAAAAGAACTCAATCAGTGAAGAATATTAGAGGAAATTATGGTGATTCTTCTCCAAGAATTAGTGTTGCATATTCCGCGGATGATTGGCGGCGCGTGTCATGTGATTCTGATTGTTCAATTTATGAAGCTGTACTTCATTGCAAAAGATCCATTGAAATGAGTTAA

Protein sequence

>Msa0982230

METSHPLSIESFSYSWLVNLKPSSLVESLDGSSFRTYLDSSDEASSFIEMDPRMPSSRRFFINSQDLKFDFPTLQQSPLTTLVDADQLFSNGYLMPLFVESLNIEPYEYDSSNSNSNSDSNSTLASSISHVTNKVVPREDSRSPSLKRCRTLSRSMFQKYLKFLRPLCRRLRGQKSGSKHENVVKRTQSVKNIRGNYGDSSPRISVAYSADDWRRVSCDSDCSIYEAVLHCKRSIEMS*