AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0241560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241560 MtrunA17_Chr2g0293101 95.066 912 45 0 1 912 1 912 0.0 1774
Msa0241560 MtrunA17_Chr2g0293111 94.157 907 52 1 1 906 1 907 0.0 1748
Msa0241560 MtrunA17_Chr1g0209901 46.374 910 444 13 32 911 28 923 0.0 837
Msa0241560 MtrunA17_Chr5g0423841 46.018 904 446 12 39 911 33 925 0.0 822
Msa0241560 MtrunA17_Chr1g0209911 45.377 941 458 15 16 911 7 936 0.0 817
Msa0241560 MtrunA17_Chr3g0130691 31.325 664 387 17 213 848 237 859 4.86e-88 300
Msa0241560 MtrunA17_Chr5g0409111 30.321 686 390 23 175 838 132 751 1.19e-82 288
Msa0241560 MtrunA17_Chr7g0256191 26.224 286 173 11 506 759 578 857 2.25e-15 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241560 AT5G11720.1 64.310 891 304 7 26 911 20 901 0.0 1176
Msa0241560 AT1G68560.1 46.806 908 435 13 34 911 23 912 0.0 835
Msa0241560 AT3G45940.1 45.626 903 432 12 17 911 1 852 0.0 802
Msa0241560 AT5G63840.1 31.971 685 385 20 200 848 226 865 5.28e-94 317
Msa0241560 AT5G63840.2 31.971 685 385 20 200 848 253 892 9.36e-94 317
Msa0241560 AT3G23640.2 30.758 660 374 20 195 833 83 680 5.90e-88 302
Msa0241560 AT3G23640.1 30.758 660 374 20 195 833 83 680 5.90e-88 302
Msa0241560 AT3G23640.3 30.758 660 374 20 195 833 152 749 8.42e-88 303

Find 184 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTAATAGTCAAGAATTT+TGG 0.071894 2_2:-17177879 Msa0241560:CDS
TGAAACATTTCTAGTCTTTA+AGG 0.082654 2_2:-17179777 Msa0241560:CDS
CCTAATTATGGTAGGTTAAA+TGG 0.142786 2_2:-17176371 Msa0241560:CDS
TGTTTGTGTTGATCTGTTTA+TGG 0.157675 2_2:+17180462 None:intergenic
TAGTGATAGTGGAATGTTTC+TGG 0.165390 2_2:+17180412 None:intergenic
CAAACCAAACTTTCACTCTT+TGG 0.188927 2_2:-17179661 Msa0241560:CDS
TTAAAGACTAGAAATGTTTC+AGG 0.191590 2_2:+17179779 None:intergenic
TCAAATTTGAAACAGCTTAT+TGG 0.199172 2_2:-17176236 Msa0241560:CDS
CCTATGCCTTATTGGTCTTT+TGG 0.203546 2_2:-17179365 Msa0241560:intron
TTCATCTCCTGAATTGGTTT+TGG 0.204644 2_2:-17179420 Msa0241560:CDS
CATACTTTCCTAAAGGAAAT+TGG 0.207731 2_2:-17176778 Msa0241560:CDS
TGTTGATCTGTTTATGGTTT+TGG 0.209798 2_2:+17180468 None:intergenic
CCATTTAACCTACCATAATT+AGG 0.210385 2_2:+17176371 None:intergenic
ATATTGAACTTTGGAATCTT+TGG 0.211841 2_2:-17177460 Msa0241560:CDS
GGCCTGCTCCTATGCCTTAT+TGG 0.219189 2_2:-17179373 Msa0241560:CDS
CCAGCAACATCTTTACATTA+TGG 0.237583 2_2:-17177682 Msa0241560:CDS
GCCCAAAATTCTTGACTATT+AGG 0.243019 2_2:+17177877 None:intergenic
AATGTTGATGTGAATCTTTA+TGG 0.246990 2_2:-17179617 Msa0241560:CDS
AGAGCTTCTCTGTATGGTTT+TGG 0.249948 2_2:-17179716 Msa0241560:CDS
TAGTTATGGACAAGTTTATT+TGG 0.260726 2_2:-17176561 Msa0241560:CDS
TTTCTCACATCCAAATAAAA+TGG 0.270492 2_2:+17179587 None:intergenic
ACTATGTCGGCGCTGGATTC+AGG 0.280579 2_2:-17177383 Msa0241560:intron
ATCTCTTGCAAAGGGGTAAA+AGG 0.281980 2_2:+17177072 None:intergenic
TATATCTTTGTTGGATTTAC+GGG 0.287040 2_2:+17179835 None:intergenic
TGTTGGCGAAGGTAACATTT+TGG 0.289442 2_2:-17176666 Msa0241560:CDS
TGCTGGTTCATCTCCTGAAT+TGG 0.290484 2_2:-17179426 Msa0241560:CDS
CATTCCAAAGAGTGAAAGTT+TGG 0.290677 2_2:+17179657 None:intergenic
AGAAATGTTTCAGGGTTTAA+AGG 0.291288 2_2:+17179788 None:intergenic
AGATCAAACCAATTTCCTTT+AGG 0.302482 2_2:+17176770 None:intergenic
TACATTAGTGTGTAGAAATA+TGG 0.304092 2_2:+17176953 None:intergenic
ACTCTTGGAATCACTTCTTC+TGG 0.305872 2_2:+17179989 None:intergenic
AAAATATTGTTACTTCTTAG+TGG 0.309008 2_2:-17180581 Msa0241560:five_prime_UTR
TCAGGGTTTAAAGGGTCTTC+TGG 0.316372 2_2:+17179797 None:intergenic
GTTACTTCTAATGTTACTAA+TGG 0.318927 2_2:-17176449 Msa0241560:CDS
TTATCTTGCGGAAAATTAAC+AGG 0.322577 2_2:+17178404 None:intergenic
CGGTGATCGTCTTACTTATA+AGG 0.324376 2_2:-17179480 Msa0241560:CDS
GTATATCTTTGTTGGATTTA+CGG 0.327444 2_2:+17179834 None:intergenic
ACGTATGCAACCTATGTTAG+AGG 0.330544 2_2:-17177991 Msa0241560:CDS
GTTAAAGAGTATATCTTTGT+TGG 0.331859 2_2:+17179826 None:intergenic
TACTGATCCAAAACCAATTC+AGG 0.336794 2_2:+17179413 None:intergenic
ACAGATCAACACAAACAAAA+TGG 0.341556 2_2:-17180456 Msa0241560:exon
ACTCTTTGGAATGAAGATAT+TGG 0.343085 2_2:-17179647 Msa0241560:CDS
TGTCATTGCTTCACCTTGTA+AGG 0.344670 2_2:+17176643 None:intergenic
GAAGACTAAAATAAGGTAGA+AGG 0.349390 2_2:-17176198 Msa0241560:exon
ATAGAAAAGGTCACATTCTT+GGG 0.349460 2_2:-17176398 Msa0241560:CDS
CATAGAAAAGGTCACATTCT+TGG 0.351516 2_2:-17176399 Msa0241560:CDS
CTCCACAACACAACTCCATT+TGG 0.353407 2_2:-17179869 Msa0241560:CDS
CAGGCAAGAGCTTTACCTTT+GGG 0.354744 2_2:-17177029 Msa0241560:CDS
TTCTTGGGGATACCTAATTA+TGG 0.360897 2_2:-17176383 Msa0241560:CDS
TATGATTCTCACAATTTGTA+TGG 0.364163 2_2:-17177646 Msa0241560:CDS
AGAATGCAAAGCAACTAATC+AGG 0.364756 2_2:-17177617 Msa0241560:CDS
AGTGGAAATGGAAATAGTTA+TGG 0.365462 2_2:-17176575 Msa0241560:CDS
TTGAACTGAAGACTAAAATA+AGG 0.365980 2_2:-17176205 Msa0241560:CDS
TGGTGGATATAACCGGTAAA+AGG 0.369319 2_2:-17177591 Msa0241560:CDS
ATCCCTTCAATATTGAACTT+TGG 0.371152 2_2:-17177469 Msa0241560:CDS
ATAAACTCACAGTTTCTATT+AGG 0.376587 2_2:-17176854 Msa0241560:CDS
CTATTAGGATTAAGAAAATC+AGG 0.379714 2_2:+17177892 None:intergenic
GATCAGTATACTCAGTTCAT+TGG 0.382985 2_2:-17179398 Msa0241560:CDS
TACTAATGGAAAATTTGCTT+TGG 0.383338 2_2:-17176435 Msa0241560:CDS
AAGAAAGCATATATTCTTTG+TGG 0.384957 2_2:+17176155 None:intergenic
GAAATGTTTCAGGGTTTAAA+GGG 0.385560 2_2:+17179789 None:intergenic
GAACACCTCATTCGAACTAT+TGG 0.389488 2_2:-17176606 Msa0241560:CDS
TCTTACTCTTAATTGATCCT+TGG 0.395280 2_2:+17180045 None:intergenic
ATCTTTGGAGTTCCTATGGT+TGG 0.396209 2_2:-17177445 Msa0241560:CDS
CCTTACAAAATTAACAGTTC+TGG 0.396993 2_2:-17177736 Msa0241560:CDS
AAAGAAACACAAACTGGTTA+TGG 0.398538 2_2:-17180329 Msa0241560:CDS
AAGAAAAGTGGCCGCGCAAT+TGG 0.399941 2_2:+17176908 None:intergenic
GTGAAGATAAGGTCTGAGTT+TGG 0.402724 2_2:+17179893 None:intergenic
ATTATCTCAAGTGCTTCTTT+CGG 0.408317 2_2:-17175991 Msa0241560:three_prime_UTR
CGTCTTACTTATAAGGTGAT+TGG 0.409781 2_2:-17179473 Msa0241560:CDS
TAGGTTAAATGGAAATGATT+TGG 0.418443 2_2:-17176360 Msa0241560:CDS
TCAACTATCTAGGTGAAGTT+TGG 0.419567 2_2:-17177933 Msa0241560:CDS
GATGTATATATAAAGAGAAA+TGG 0.419581 2_2:-17177958 Msa0241560:CDS
TTCTGCACTCACTGAATTTG+AGG 0.421849 2_2:+17176739 None:intergenic
TGGAATCTTTGGAGTTCCTA+TGG 0.422002 2_2:-17177449 Msa0241560:CDS
TCTTTCGGATTAAGTACAAA+TGG 0.424760 2_2:-17175976 None:intergenic
AATTCAGTGAGTGCAGAATC+AGG 0.427668 2_2:-17176734 Msa0241560:CDS
TCAGGCAAGAGCTTTACCTT+TGG 0.428705 2_2:-17177030 Msa0241560:CDS
TCAGAAATATGTGCTTATCT+TGG 0.433264 2_2:-17178345 Msa0241560:CDS
CAGAAGGCTAGTAGTGATAG+TGG 0.433587 2_2:+17180401 None:intergenic
ATTCCAAAGTTCAATATTGA+AGG 0.434787 2_2:+17177466 None:intergenic
AGAAATGGAGTCAACTATCT+AGG 0.438589 2_2:-17177943 Msa0241560:CDS
CAAAGCAACTAATCAGGCTT+TGG 0.444853 2_2:-17177611 Msa0241560:CDS
CCATAATGTAAAGATGTTGC+TGG 0.446043 2_2:+17177682 None:intergenic
GTCTCACCTGTGCTACAATC+TGG 0.446789 2_2:-17176818 Msa0241560:CDS
TTATCTAGTATAGTGTCAAA+AGG 0.447920 2_2:-17176059 Msa0241560:three_prime_UTR
TCTGAATGATCTCTTGCAAA+GGG 0.451001 2_2:+17177064 None:intergenic
ATGTACGAATCAAACACAAA+AGG 0.457037 2_2:-17176935 Msa0241560:CDS
GATGAAGATGATGAGACTCT+TGG 0.463129 2_2:+17179974 None:intergenic
CTGATTCAAACAATCAAAGA+TGG 0.463871 2_2:-17180018 Msa0241560:CDS
CAGGCTTTGGTGGATATAAC+CGG 0.464171 2_2:-17177598 Msa0241560:CDS
TATCTGTCCACATAACTTCA+AGG 0.466342 2_2:+17178465 None:intergenic
GTTGATGCATACTTTCCTAA+AGG 0.469389 2_2:-17176785 Msa0241560:CDS
CTTTCGGATTAAGTACAAAT+GGG 0.470295 2_2:-17175975 None:intergenic
AGCAACTAATCAGGCTTTGG+TGG 0.472427 2_2:-17177608 Msa0241560:CDS
GGTGAGGCTCTTGATCTAGA+AGG 0.473207 2_2:-17176533 Msa0241560:CDS
TATCTAGGTGAAGTTTGGCC+TGG 0.473594 2_2:-17177928 Msa0241560:CDS
CCATCAAAAGAAACACAAAC+TGG 0.479486 2_2:-17180335 Msa0241560:CDS
CACTTCTCAACCTCAGTGCC+AGG 0.484820 2_2:-17180208 Msa0241560:intron
TATGAGAAAACAATGAATGA+TGG 0.486107 2_2:+17180508 None:intergenic
TGTACGAATCAAACACAAAA+GGG 0.487657 2_2:-17176934 Msa0241560:CDS
GGACAAGTTTATTTGGATGA+TGG 0.487865 2_2:-17176554 Msa0241560:CDS
TAAAGACTAGAAATGTTTCA+GGG 0.489335 2_2:+17179780 None:intergenic
TCTGCACTCACTGAATTTGA+GGG 0.489690 2_2:+17176740 None:intergenic
GACTTACCAAAAGACCAATA+AGG 0.490076 2_2:+17179359 None:intergenic
TCAAGCCAAAGACCATCAAA+AGG 0.495965 2_2:+17177823 None:intergenic
TCGTATGTCGTGATATCCTC+GGG 0.500032 2_2:+17176878 None:intergenic
CTGGCAAGTATACAGCTCAT+TGG 0.501264 2_2:-17177534 Msa0241560:CDS
CGGGTGATAGTGAAACCAAA+TGG 0.503226 2_2:+17179854 None:intergenic
ACTTCTTAATAGTAATGGAA+TGG 0.506681 2_2:-17179516 Msa0241560:CDS
GTTGATCTACTCAAAATGAA+TGG 0.508385 2_2:+17177568 None:intergenic
TTCCAAAGTTCAATATTGAA+GGG 0.515791 2_2:+17177467 None:intergenic
CTTACTTATAAGGTGATTGG+TGG 0.516125 2_2:-17179470 Msa0241560:CDS
TCAGGATAGTAAACTTGTCC+AGG 0.516398 2_2:+17177910 None:intergenic
GACCAATAAGGCATAGGAGC+AGG 0.516640 2_2:+17179371 None:intergenic
GTGAGAAAGGGTTCATCTGA+TGG 0.517583 2_2:-17179572 Msa0241560:CDS
AGGTTGAGAAGTGGAATGTC+GGG 0.524210 2_2:+17180218 None:intergenic
TTCGTATGTCGTGATATCCT+CGG 0.526702 2_2:+17176877 None:intergenic
AAGGTAAAGCTCTTGCCTGA+TGG 0.527100 2_2:+17177033 None:intergenic
TATCTAGTATAGTGTCAAAA+GGG 0.534291 2_2:-17176058 Msa0241560:three_prime_UTR
CATATATCCGCTCCAACCAT+AGG 0.534754 2_2:+17177433 None:intergenic
CTGAAGAACTATGTCGGCGC+TGG 0.534767 2_2:-17177390 Msa0241560:CDS
GTGTGTAGAAATATGGAAGA+AGG 0.535911 2_2:+17176960 None:intergenic
ATCTGAATGATCTCTTGCAA+AGG 0.539186 2_2:+17177063 None:intergenic
ATCTGTCCACATAACTTCAA+GGG 0.541232 2_2:+17178466 None:intergenic
GCATACCCCTTGAAGTTATG+TGG 0.541516 2_2:-17178472 Msa0241560:CDS
TATGTGCTTATCTTGGATCC+AGG 0.542404 2_2:-17178338 Msa0241560:intron
TAGAAGGAGAGAAAGATCAA+TGG 0.544165 2_2:-17176517 Msa0241560:CDS
CAGGAGATAATGCTGCTACA+TGG 0.545216 2_2:-17177510 Msa0241560:CDS
AAGTATACAGCTCATTGGAC+AGG 0.547239 2_2:-17177529 Msa0241560:CDS
GAGGTTGAGAAGTGGAATGT+CGG 0.549383 2_2:+17180217 None:intergenic
TGTTGTGGAGTGTGAAGATA+AGG 0.549530 2_2:+17179882 None:intergenic
TACTTCTTAGTGGAAAATGT+TGG 0.550682 2_2:-17180571 Msa0241560:five_prime_UTR
GTAACCAACTATGCAAAAGC+TGG 0.550918 2_2:-17178494 Msa0241560:CDS
GGAGACAAGCTATGTTGAGT+AGG 0.552914 2_2:+17180529 None:intergenic
AGTTTATTTGGATGATGGTG+AGG 0.554211 2_2:-17176549 Msa0241560:CDS
AAACTTATCATCTTATCTTG+CGG 0.554720 2_2:+17178392 None:intergenic
TGGGGATACCTAATTATGGT+AGG 0.555154 2_2:-17176379 Msa0241560:CDS
GTGGACAGATATTGATTACA+TGG 0.557543 2_2:-17178453 Msa0241560:CDS
AGTATACTCAGTTCATTGGT+AGG 0.561924 2_2:-17179394 Msa0241560:CDS
CTGATGGAAGAGTGAAAAGT+GGG 0.562079 2_2:-17179556 Msa0241560:CDS
ATAAAGATTCACATCAACAT+TGG 0.567891 2_2:+17179619 None:intergenic
CCAAAAGACCAATAAGGCAT+AGG 0.573302 2_2:+17179365 None:intergenic
AACAACCAATAGTTCGAATG+AGG 0.573769 2_2:+17176601 None:intergenic
GTGAAAAGTGGGGCCACACA+TGG 0.573803 2_2:-17179545 Msa0241560:CDS
AAGACTAAAATAAGGTAGAA+GGG 0.574007 2_2:-17176197 Msa0241560:exon
TGGAAGAAGGCGGTAACGAA+GGG 0.574037 2_2:+17176973 None:intergenic
AGCTTGCAAACCTCTAACAT+AGG 0.574184 2_2:+17177981 None:intergenic
TGATTCAAACAATCAAAGAT+GGG 0.574586 2_2:-17180017 Msa0241560:CDS
ACTGCACCAGATTGTAGCAC+AGG 0.578361 2_2:+17176812 None:intergenic
TCACAGTTTCTATTAGGCAA+AGG 0.581170 2_2:-17176848 Msa0241560:CDS
CAAGCCAAAGACCATCAAAA+GGG 0.585119 2_2:+17177824 None:intergenic
ATAAATGTGCATGTTGGCGA+AGG 0.585403 2_2:-17176677 Msa0241560:CDS
AACCAAATGGAGTTGTGTTG+TGG 0.590183 2_2:+17179867 None:intergenic
GGGTTGTCATGGTTTGAATG+TGG 0.592344 2_2:+17177760 None:intergenic
ATGGAAGAAGGCGGTAACGA+AGG 0.592743 2_2:+17176972 None:intergenic
AAAACTCATCAAATCCTCCT+CGG 0.602708 2_2:-17180249 Msa0241560:CDS
ACCTTAACTAAGGTGAAACA+AGG 0.603803 2_2:+17176107 None:intergenic
ACACTACTGAAGAACTATGT+CGG 0.607415 2_2:-17177396 Msa0241560:CDS
TGGAGTTCCTATGGTTGGAG+CGG 0.611312 2_2:-17177440 Msa0241560:CDS
TCGGGGAATGAAAAGAAAAG+TGG 0.613496 2_2:+17176896 None:intergenic
AAGAAGTAAAACACCATGTG+TGG 0.615128 2_2:+17179532 None:intergenic
TCTGATGGAAGAGTGAAAAG+TGG 0.615826 2_2:-17179557 Msa0241560:CDS
AGTGAGTTGAATGTTGTGAG+TGG 0.625431 2_2:-17176332 Msa0241560:CDS
TGCACATTTATGTGATCAGA+TGG 0.629493 2_2:+17176689 None:intergenic
TAGTTAGTTACCTGGCACTG+AGG 0.632289 2_2:+17180198 None:intergenic
CTGGCACTGAGGTTGAGAAG+TGG 0.635565 2_2:+17180209 None:intergenic
TGTAAGTGATGTCGAAGGTG+TGG 0.640371 2_2:-17178516 Msa0241560:CDS
TAGAAAAGGTCACATTCTTG+GGG 0.641323 2_2:-17176397 Msa0241560:CDS
CAATGACAACAAAAGCAGCT+CGG 0.641688 2_2:-17176628 Msa0241560:CDS
TCTGTCCACATAACTTCAAG+GGG 0.647898 2_2:+17178467 None:intergenic
ATGGTTGGAGCGGATATATG+CGG 0.650160 2_2:-17177430 Msa0241560:CDS
TGTAGAAATATGGAAGAAGG+CGG 0.651249 2_2:+17176963 None:intergenic
AAGAATGTAAGTGATGTCGA+AGG 0.660102 2_2:-17178521 Msa0241560:CDS
ATGCTGCAACTGAATCCCAA+AGG 0.664437 2_2:+17177014 None:intergenic
GATCACATAAATGTGCATGT+TGG 0.667069 2_2:-17176683 Msa0241560:CDS
GACACAAAGATTGAGACAGA+AGG 0.668866 2_2:+17180385 None:intergenic
CTGAATGATCTCTTGCAAAG+GGG 0.678141 2_2:+17177065 None:intergenic
CAAAAGGGACACCAATTGCG+CGG 0.682204 2_2:-17176919 Msa0241560:CDS
CCTTAACTAAGGTGAAACAA+GGG 0.685925 2_2:+17176108 None:intergenic
GGAATGGATGTTGAATATAG+CGG 0.714622 2_2:-17179500 Msa0241560:CDS
TGAGTGGAATGAATTCAATG+AGG 0.735898 2_2:-17176316 Msa0241560:CDS
TGATGGAAGAGTGAAAAGTG+GGG 0.741184 2_2:-17179555 Msa0241560:CDS
CGTATGTCGTGATATCCTCG+GGG 0.754542 2_2:+17176879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAATAAACTATGAT+TGG + chr2_2:17176422-17176441 None:intergenic 15.0%
!! AAATTTATAAAAGCTACATA+TGG - chr2_2:17179277-17179296 Msa0241560:intron 15.0%
!!! AAAATATTGTTACTTCTTAG+TGG - chr2_2:17176001-17176020 Msa0241560:three_prime_UTR 20.0%
!!! GTTTTACTTCTTAATAGTAA+TGG - chr2_2:17177061-17177080 Msa0241560:CDS 20.0%
!!! TTTGATTTGTATTTTTTTGC+TGG - chr2_2:17177139-17177158 Msa0241560:intron 20.0%
!!! TTTTTTCTATGACAATAACA+TGG - chr2_2:17177643-17177662 Msa0241560:CDS 20.0%
!! GTCTTTATATTTAGAAATTG+TGG + chr2_2:17177733-17177752 None:intergenic 20.0%
!! TTTGTGTATCATCTATATAT+AGG + chr2_2:17177839-17177858 None:intergenic 20.0%
!! CACAAAATTAATCCATATAA+AGG - chr2_2:17177853-17177872 Msa0241560:CDS 20.0%
!! TTTCATAAAGTACAATTCAA+TGG + chr2_2:17177886-17177905 None:intergenic 20.0%
!! TGGAATTTGATATAATGAAT+CGG + chr2_2:17177979-17177998 None:intergenic 20.0%
!! TTCATTATATCAAATTCCAA+TGG - chr2_2:17177980-17177999 Msa0241560:CDS 20.0%
!!! TATTTTATGGTGTTAGAATT+AGG + chr2_2:17178272-17178291 None:intergenic 20.0%
!!! TTAGTTTGGAAGATATTTTA+TGG + chr2_2:17178285-17178304 None:intergenic 20.0%
!! GATGTATATATAAAGAGAAA+TGG - chr2_2:17178624-17178643 Msa0241560:intron 20.0%
!!! TTTTGATCACAAAATTTGAT+AGG - chr2_2:17180296-17180315 Msa0241560:CDS 20.0%
! TATGAGAAAACAATGAATGA+TGG + chr2_2:17176077-17176096 None:intergenic 25.0%
!!! ATGTTTCTGGTTTTAGTTAT+TGG + chr2_2:17176160-17176179 None:intergenic 25.0%
!! AGTGTAAAAATTGATTCAAC+AGG - chr2_2:17176289-17176308 Msa0241560:CDS 25.0%
! AACAATCTAGTAAAAGAGAA+AGG + chr2_2:17176450-17176469 None:intergenic 25.0%
! AACAATCTAGTAAAAGAGAA+AGG + chr2_2:17176450-17176469 None:intergenic 25.0%
! TGATTCAAACAATCAAAGAT+GGG - chr2_2:17176565-17176584 Msa0241560:CDS 25.0%
!!! ATTTTGAGTTTTGCGAATTT+TGG + chr2_2:17176655-17176674 None:intergenic 25.0%
! TATATCTTTGTTGGATTTAC+GGG + chr2_2:17176750-17176769 None:intergenic 25.0%
! GTATATCTTTGTTGGATTTA+CGG + chr2_2:17176751-17176770 None:intergenic 25.0%
!! GTTAAAGAGTATATCTTTGT+TGG + chr2_2:17176759-17176778 None:intergenic 25.0%
! TAAAGACTAGAAATGTTTCA+GGG + chr2_2:17176805-17176824 None:intergenic 25.0%
! TTAAAGACTAGAAATGTTTC+AGG + chr2_2:17176806-17176825 None:intergenic 25.0%
!!! TGAAACATTTCTAGTCTTTA+AGG - chr2_2:17176805-17176824 Msa0241560:CDS 25.0%
! ATAAAGATTCACATCAACAT+TGG + chr2_2:17176966-17176985 None:intergenic 25.0%
! AATGTTGATGTGAATCTTTA+TGG - chr2_2:17176965-17176984 Msa0241560:CDS 25.0%
! TTTCTCACATCCAAATAAAA+TGG + chr2_2:17176998-17177017 None:intergenic 25.0%
!!! ATTTTATTTGGATGTGAGAA+AGG - chr2_2:17176997-17177016 Msa0241560:CDS 25.0%
!!! TTTTATTTGGATGTGAGAAA+GGG - chr2_2:17176998-17177017 Msa0241560:CDS 25.0%
!! ACTTCTTAATAGTAATGGAA+TGG - chr2_2:17177066-17177085 Msa0241560:CDS 25.0%
! AAAAATTCAACAAACCATGT+TGG + chr2_2:17177248-17177267 None:intergenic 25.0%
!! TTTTTCATTCCTTTTTATCC+TGG - chr2_2:17177263-17177282 Msa0241560:intron 25.0%
! ACTTGAAAGAATGTGTTTAT+AGG - chr2_2:17177764-17177783 Msa0241560:CDS 25.0%
! CAAAGAGTTTACAATATTTG+TGG + chr2_2:17178010-17178029 None:intergenic 25.0%
! ATATTGTAAACTCTTTGTGA+AGG - chr2_2:17178013-17178032 Msa0241560:intron 25.0%
! AAACTTATCATCTTATCTTG+CGG + chr2_2:17178193-17178212 None:intergenic 25.0%
! TGAGTATAGTATGTTTAGTT+TGG + chr2_2:17178299-17178318 None:intergenic 25.0%
! CTATTAGGATTAAGAAAATC+AGG + chr2_2:17178693-17178712 None:intergenic 25.0%
!! ATCCTAATAGTCAAGAATTT+TGG - chr2_2:17178703-17178722 Msa0241560:intron 25.0%
!! TCCTAATAGTCAAGAATTTT+GGG - chr2_2:17178704-17178723 Msa0241560:intron 25.0%
!! AACTGTTAATTTTGTAAGGA+GGG + chr2_2:17178845-17178864 None:intergenic 25.0%
! TATGATTCTCACAATTTGTA+TGG - chr2_2:17178936-17178955 Msa0241560:intron 25.0%
! TTCCAAAGTTCAATATTGAA+GGG + chr2_2:17179118-17179137 None:intergenic 25.0%
! ATTCCAAAGTTCAATATTGA+AGG + chr2_2:17179119-17179138 None:intergenic 25.0%
!!! ATATTGAACTTTGGAATCTT+TGG - chr2_2:17179122-17179141 Msa0241560:intron 25.0%
!! TTATTTTCCTGAATGTAGTT+AGG - chr2_2:17179485-17179504 Msa0241560:CDS 25.0%
!! TATTTTCCTGAATGTAGTTA+GGG - chr2_2:17179486-17179505 Msa0241560:CDS 25.0%
! ATTCAGATAAAAATTCCATC+AGG - chr2_2:17179534-17179553 Msa0241560:CDS 25.0%
! TACATTAGTGTGTAGAAATA+TGG + chr2_2:17179632-17179651 None:intergenic 25.0%
! ATAAACTCACAGTTTCTATT+AGG - chr2_2:17179728-17179747 Msa0241560:CDS 25.0%
! TAGTTATGGACAAGTTTATT+TGG - chr2_2:17180021-17180040 Msa0241560:CDS 25.0%
! GTTACTTCTAATGTTACTAA+TGG - chr2_2:17180133-17180152 Msa0241560:intron 25.0%
!! TACTAATGGAAAATTTGCTT+TGG - chr2_2:17180147-17180166 Msa0241560:intron 25.0%
! TAGGTTAAATGGAAATGATT+TGG - chr2_2:17180222-17180241 Msa0241560:CDS 25.0%
!! TCAAATTTGAAACAGCTTAT+TGG - chr2_2:17180346-17180365 Msa0241560:CDS 25.0%
! TTGAACTGAAGACTAAAATA+AGG - chr2_2:17180377-17180396 Msa0241560:CDS 25.0%
! AAGACTAAAATAAGGTAGAA+GGG - chr2_2:17180385-17180404 Msa0241560:CDS 25.0%
!! AAGAAAGCATATATTCTTTG+TGG + chr2_2:17180430-17180449 None:intergenic 25.0%
! TTATCTAGTATAGTGTCAAA+AGG - chr2_2:17180523-17180542 Msa0241560:five_prime_UTR 25.0%
! TATCTAGTATAGTGTCAAAA+GGG - chr2_2:17180524-17180543 Msa0241560:five_prime_UTR 25.0%
TACTTCTTAGTGGAAAATGT+TGG - chr2_2:17176011-17176030 Msa0241560:three_prime_UTR 30.0%
!!! TTATGGTTTTGGATACAAGT+TGG + chr2_2:17176106-17176125 None:intergenic 30.0%
! TGTTGATCTGTTTATGGTTT+TGG + chr2_2:17176117-17176136 None:intergenic 30.0%
! TGTTTGTGTTGATCTGTTTA+TGG + chr2_2:17176123-17176142 None:intergenic 30.0%
ACAGATCAACACAAACAAAA+TGG - chr2_2:17176126-17176145 Msa0241560:three_prime_UTR 30.0%
AAAGAAACACAAACTGGTTA+TGG - chr2_2:17176253-17176272 Msa0241560:CDS 30.0%
TAGTTAGTTAGTTAGTTACC+TGG + chr2_2:17176395-17176414 None:intergenic 30.0%
TCTTACTCTTAATTGATCCT+TGG + chr2_2:17176540-17176559 None:intergenic 30.0%
CTGATTCAAACAATCAAAGA+TGG - chr2_2:17176564-17176583 Msa0241560:CDS 30.0%
GAAATGTTTCAGGGTTTAAA+GGG + chr2_2:17176796-17176815 None:intergenic 30.0%
AGAAATGTTTCAGGGTTTAA+AGG + chr2_2:17176797-17176816 None:intergenic 30.0%
!! ACTCTTTGGAATGAAGATAT+TGG - chr2_2:17176935-17176954 Msa0241560:CDS 30.0%
CTAAAACTACCAGGATAAAA+AGG + chr2_2:17177275-17177294 None:intergenic 30.0%
GTAAAACAACTAAAACTACC+AGG + chr2_2:17177284-17177303 None:intergenic 30.0%
TGACCTTATTGGTATCAATT+TGG - chr2_2:17177435-17177454 Msa0241560:CDS 30.0%
GTTCCAAATTGATACCAATA+AGG + chr2_2:17177441-17177460 None:intergenic 30.0%
TCTATGACAATAACATGGTT+TGG - chr2_2:17177648-17177667 Msa0241560:CDS 30.0%
! AATAACATGGTTTGGAATTG+AGG - chr2_2:17177656-17177675 Msa0241560:CDS 30.0%
AATGGCTATAGACCTTTATA+TGG + chr2_2:17177868-17177887 None:intergenic 30.0%
AAATTTCTATGCATTAGTCC+AGG - chr2_2:17177903-17177922 Msa0241560:CDS 30.0%
! CAATATTTGTGGATTACCAT+TGG + chr2_2:17177999-17178018 None:intergenic 30.0%
TTATCTTGCGGAAAATTAAC+AGG + chr2_2:17178181-17178200 None:intergenic 30.0%
!! TTTCTGACCATTTTTGTGAA+GGG + chr2_2:17178224-17178243 None:intergenic 30.0%
!! ATTTCTGACCATTTTTGTGA+AGG + chr2_2:17178225-17178244 None:intergenic 30.0%
TCAGAAATATGTGCTTATCT+TGG - chr2_2:17178237-17178256 Msa0241560:intron 30.0%
ATTGCACTAATTGTGAAACT+AGG + chr2_2:17178389-17178408 None:intergenic 30.0%
GAAATAGAAGATAGTATTGC+AGG + chr2_2:17178429-17178448 None:intergenic 30.0%
CTATCTTCTATTTCGCATAA+CGG - chr2_2:17178435-17178454 Msa0241560:CDS 30.0%
!!! TATTTCGCATAACGGATTTT+TGG - chr2_2:17178443-17178462 Msa0241560:CDS 30.0%
!! TGTGATATGTCATTGATTTG+AGG - chr2_2:17178535-17178554 Msa0241560:CDS 30.0%
! GAACTGTTAATTTTGTAAGG+AGG + chr2_2:17178846-17178865 None:intergenic 30.0%
! CCAGAACTGTTAATTTTGTA+AGG + chr2_2:17178849-17178868 None:intergenic 30.0%
CCTTACAAAATTAACAGTTC+TGG - chr2_2:17178846-17178865 Msa0241560:intron 30.0%
GTTGATCTACTCAAAATGAA+TGG + chr2_2:17179017-17179036 None:intergenic 30.0%
ATCCCTTCAATATTGAACTT+TGG - chr2_2:17179113-17179132 Msa0241560:intron 30.0%
CAAACATTGATCCTCAAAAT+CGG - chr2_2:17179226-17179245 Msa0241560:intron 30.0%
TTAGTCTAGTGAAAAAGTTG+TGG + chr2_2:17179259-17179278 None:intergenic 30.0%
!!! AGATCTGTGATTTTTTGCTA+CGG - chr2_2:17179302-17179321 Msa0241560:intron 30.0%
CCATCAGAGTCTTAAAAAAA+GGG + chr2_2:17179427-17179446 None:intergenic 30.0%
TCCATCAGAGTCTTAAAAAA+AGG + chr2_2:17179428-17179447 None:intergenic 30.0%
! ATTTTCCTGAATGTAGTTAG+GGG - chr2_2:17179487-17179506 Msa0241560:CDS 30.0%
ATGTACGAATCAAACACAAA+AGG - chr2_2:17179647-17179666 Msa0241560:CDS 30.0%
TGTACGAATCAAACACAAAA+GGG - chr2_2:17179648-17179667 Msa0241560:CDS 30.0%
CATACTTTCCTAAAGGAAAT+TGG - chr2_2:17179804-17179823 Msa0241560:CDS 30.0%
AGATCAAACCAATTTCCTTT+AGG + chr2_2:17179815-17179834 None:intergenic 30.0%
!!! GAACTATTGGTTGTTTTTAG+TGG - chr2_2:17179989-17180008 Msa0241560:CDS 30.0%
!!! TTGGTTGTTTTTAGTGGAAA+TGG - chr2_2:17179995-17180014 Msa0241560:CDS 30.0%
AGTGGAAATGGAAATAGTTA+TGG - chr2_2:17180007-17180026 Msa0241560:CDS 30.0%
! AATTTGCTTTGGACCAAAAA+TGG - chr2_2:17180158-17180177 Msa0241560:intron 30.0%
! CCTTTTCTATGATCCATTTT+TGG + chr2_2:17180174-17180193 None:intergenic 30.0%
CCAAAAATGGATCATAGAAA+AGG - chr2_2:17180171-17180190 Msa0241560:intron 30.0%
ATAGAAAAGGTCACATTCTT+GGG - chr2_2:17180184-17180203 Msa0241560:intron 30.0%
CCATTTAACCTACCATAATT+AGG + chr2_2:17180214-17180233 None:intergenic 30.0%
CCTAATTATGGTAGGTTAAA+TGG - chr2_2:17180211-17180230 Msa0241560:CDS 30.0%
GAAGACTAAAATAAGGTAGA+AGG - chr2_2:17180384-17180403 Msa0241560:CDS 30.0%
CTTAGTTAAGGTTACTACAA+GGG - chr2_2:17180486-17180505 Msa0241560:five_prime_UTR 30.0%
ATTATCTCAAGTGCTTCTTT+CGG - chr2_2:17180591-17180610 Msa0241560:five_prime_UTR 30.0%
!! TAGTGATAGTGGAATGTTTC+TGG + chr2_2:17176173-17176192 None:intergenic 35.0%
! CCAGTTTGTGTTTCTTTTGA+TGG + chr2_2:17176250-17176269 None:intergenic 35.0%
CCATCAAAAGAAACACAAAC+TGG - chr2_2:17176247-17176266 Msa0241560:CDS 35.0%
! AGGAGGATTTGATGAGTTTT+AGG + chr2_2:17176333-17176352 None:intergenic 35.0%
AAAACTCATCAAATCCTCCT+CGG - chr2_2:17176333-17176352 Msa0241560:CDS 35.0%
! TTGAGTTTTGCGAATTTTGG+TGG + chr2_2:17176652-17176671 None:intergenic 35.0%
! TACAGAGAAGCTCTTTTTGA+AGG + chr2_2:17176860-17176879 None:intergenic 35.0%
TCAAAAAGAGCTTCTCTGTA+TGG - chr2_2:17176860-17176879 Msa0241560:CDS 35.0%
CAAACCAAACTTTCACTCTT+TGG - chr2_2:17176921-17176940 Msa0241560:CDS 35.0%
CATTCCAAAGAGTGAAAGTT+TGG + chr2_2:17176928-17176947 None:intergenic 35.0%
! TGGCTCTCATCCATTTTATT+TGG - chr2_2:17176985-17177004 Msa0241560:CDS 35.0%
AAGAAGTAAAACACCATGTG+TGG + chr2_2:17177053-17177072 None:intergenic 35.0%
GGAATGGATGTTGAATATAG+CGG - chr2_2:17177082-17177101 Msa0241560:CDS 35.0%
CGTCTTACTTATAAGGTGAT+TGG - chr2_2:17177109-17177128 Msa0241560:intron 35.0%
CTTACTTATAAGGTGATTGG+TGG - chr2_2:17177112-17177131 Msa0241560:intron 35.0%
!! TTCATCTCCTGAATTGGTTT+TGG - chr2_2:17177162-17177181 Msa0241560:intron 35.0%
TACTGATCCAAAACCAATTC+AGG + chr2_2:17177172-17177191 None:intergenic 35.0%
GATCAGTATACTCAGTTCAT+TGG - chr2_2:17177184-17177203 Msa0241560:intron 35.0%
AGTATACTCAGTTCATTGGT+AGG - chr2_2:17177188-17177207 Msa0241560:intron 35.0%
GACTTACCAAAAGACCAATA+AGG + chr2_2:17177226-17177245 None:intergenic 35.0%
ACTTCAGCAATGACTGATAT+TGG - chr2_2:17177362-17177381 Msa0241560:intron 35.0%
!! CAATGACTGATATTGGTTCT+CGG - chr2_2:17177369-17177388 Msa0241560:intron 35.0%
!! AATGACTGATATTGGTTCTC+GGG - chr2_2:17177370-17177389 Msa0241560:intron 35.0%
TTGAACAAATTCTCAGGTTC+TGG - chr2_2:17177582-17177601 Msa0241560:CDS 35.0%
!!! TTTTAGAATCCCTTACGTTG+TGG - chr2_2:17177688-17177707 Msa0241560:CDS 35.0%
! GAAATTGTGGTTTGCAACAA+CGG + chr2_2:17177720-17177739 None:intergenic 35.0%
AGGCCATTCCTAACTAATTA+GGG + chr2_2:17177819-17177838 None:intergenic 35.0%
TAGGCCATTCCTAACTAATT+AGG + chr2_2:17177820-17177839 None:intergenic 35.0%
GAAAGACAATTGCAATAGAC+TGG + chr2_2:17177944-17177963 None:intergenic 35.0%
! GGTTTTCATCAATGTCGATA+TGG - chr2_2:17178034-17178053 Msa0241560:intron 35.0%
AAGAATGTAAGTGATGTCGA+AGG - chr2_2:17178061-17178080 Msa0241560:intron 35.0%
ATCTGTCCACATAACTTCAA+GGG + chr2_2:17178119-17178138 None:intergenic 35.0%
TATCTGTCCACATAACTTCA+AGG + chr2_2:17178120-17178139 None:intergenic 35.0%
! GTGGACAGATATTGATTACA+TGG - chr2_2:17178129-17178148 Msa0241560:intron 35.0%
GTTGATACCCTTCACAAAAA+TGG - chr2_2:17178214-17178233 Msa0241560:intron 35.0%
TGTGAAACTAGGATAGTGTT+GGG + chr2_2:17178378-17178397 None:intergenic 35.0%
TTGTGAAACTAGGATAGTGT+TGG + chr2_2:17178379-17178398 None:intergenic 35.0%
GCGTTATCAATGACGTATTA+CGG + chr2_2:17178483-17178502 None:intergenic 35.0%
! TTGAGGCAAATTTTGTACAC+AGG - chr2_2:17178552-17178571 Msa0241560:intron 35.0%
AGAAATGGAGTCAACTATCT+AGG - chr2_2:17178639-17178658 Msa0241560:intron 35.0%
TCAACTATCTAGGTGAAGTT+TGG - chr2_2:17178649-17178668 Msa0241560:intron 35.0%
GCCCAAAATTCTTGACTATT+AGG + chr2_2:17178708-17178727 None:intergenic 35.0%
! AATGACATTCTCCCTTTTGA+TGG - chr2_2:17178747-17178766 Msa0241560:intron 35.0%
! GGAACAGTTTTCTCGTTAAT+TGG + chr2_2:17178882-17178901 None:intergenic 35.0%
CCATAATGTAAAGATGTTGC+TGG + chr2_2:17178903-17178922 None:intergenic 35.0%
CCAGCAACATCTTTACATTA+TGG - chr2_2:17178900-17178919 Msa0241560:intron 35.0%
AGAATGCAAAGCAACTAATC+AGG - chr2_2:17178965-17178984 Msa0241560:intron 35.0%
! CAAAATGAATGGCCTTTTAC+CGG + chr2_2:17179006-17179025 None:intergenic 35.0%
! AGATCAACTTTTGTTAGCTC+TGG - chr2_2:17179029-17179048 Msa0241560:intron 35.0%
ACACTACTGAAGAACTATGT+CGG - chr2_2:17179186-17179205 Msa0241560:intron 35.0%
!!! GATCTGTGATTTTTTGCTAC+GGG - chr2_2:17179303-17179322 Msa0241560:intron 35.0%
! TTTTTGCTACGGGTAAAGAA+AGG - chr2_2:17179313-17179332 Msa0241560:intron 35.0%
!!! CCCTTTTTTTAAGACTCTGA+TGG - chr2_2:17179424-17179443 Msa0241560:CDS 35.0%
TCTGAATGATCTCTTGCAAA+GGG + chr2_2:17179521-17179540 None:intergenic 35.0%
ATCTGAATGATCTCTTGCAA+AGG + chr2_2:17179522-17179541 None:intergenic 35.0%
TGTAGAAATATGGAAGAAGG+CGG + chr2_2:17179622-17179641 None:intergenic 35.0%
GTGTGTAGAAATATGGAAGA+AGG + chr2_2:17179625-17179644 None:intergenic 35.0%
TCACAGTTTCTATTAGGCAA+AGG - chr2_2:17179734-17179753 Msa0241560:CDS 35.0%
GTTGATGCATACTTTCCTAA+AGG - chr2_2:17179797-17179816 Msa0241560:CDS 35.0%
TGCACATTTATGTGATCAGA+TGG + chr2_2:17179896-17179915 None:intergenic 35.0%
GATCACATAAATGTGCATGT+TGG - chr2_2:17179899-17179918 Msa0241560:CDS 35.0%
AACAACCAATAGTTCGAATG+AGG + chr2_2:17179984-17180003 None:intergenic 35.0%
GGACAAGTTTATTTGGATGA+TGG - chr2_2:17180028-17180047 Msa0241560:CDS 35.0%
! AGTTTATTTGGATGATGGTG+AGG - chr2_2:17180033-17180052 Msa0241560:CDS 35.0%
TAGAAGGAGAGAAAGATCAA+TGG - chr2_2:17180065-17180084 Msa0241560:intron 35.0%
! TGGACACTTGTGAGATTTTA+TGG - chr2_2:17180085-17180104 Msa0241560:intron 35.0%
CATAGAAAAGGTCACATTCT+TGG - chr2_2:17180183-17180202 Msa0241560:intron 35.0%
TAGAAAAGGTCACATTCTTG+GGG - chr2_2:17180185-17180204 Msa0241560:intron 35.0%
TTCTTGGGGATACCTAATTA+TGG - chr2_2:17180199-17180218 Msa0241560:intron 35.0%
TGAGTGGAATGAATTCAATG+AGG - chr2_2:17180266-17180285 Msa0241560:CDS 35.0%
CCTTAACTAAGGTGAAACAA+GGG + chr2_2:17180477-17180496 None:intergenic 35.0%
ACCTTAACTAAGGTGAAACA+AGG + chr2_2:17180478-17180497 None:intergenic 35.0%
CCTTGTAGTAACCTTAACTA+AGG + chr2_2:17180488-17180507 None:intergenic 35.0%
CCTTAGTTAAGGTTACTACA+AGG - chr2_2:17180485-17180504 Msa0241560:five_prime_UTR 35.0%
GACACAAAGATTGAGACAGA+AGG + chr2_2:17176200-17176219 None:intergenic 40.0%
! ATCAAATCCTCCTCGGTTTT+TGG - chr2_2:17176340-17176359 Msa0241560:CDS 40.0%
!!! ACATTGCAGTTTTGAGACCA+AGG - chr2_2:17176520-17176539 Msa0241560:CDS 40.0%
ACTCTTGGAATCACTTCTTC+TGG + chr2_2:17176596-17176615 None:intergenic 40.0%
GATGAAGATGATGAGACTCT+TGG + chr2_2:17176611-17176630 None:intergenic 40.0%
GTGAAGATAAGGTCTGAGTT+TGG + chr2_2:17176692-17176711 None:intergenic 40.0%
TGTTGTGGAGTGTGAAGATA+AGG + chr2_2:17176703-17176722 None:intergenic 40.0%
AACCAAATGGAGTTGTGTTG+TGG + chr2_2:17176718-17176737 None:intergenic 40.0%
! AGAGCTTCTCTGTATGGTTT+TGG - chr2_2:17176866-17176885 Msa0241560:CDS 40.0%
TCTGATGGAAGAGTGAAAAG+TGG - chr2_2:17177025-17177044 Msa0241560:CDS 40.0%
CTGATGGAAGAGTGAAAAGT+GGG - chr2_2:17177026-17177045 Msa0241560:CDS 40.0%
TGATGGAAGAGTGAAAAGTG+GGG - chr2_2:17177027-17177046 Msa0241560:CDS 40.0%
CGGTGATCGTCTTACTTATA+AGG - chr2_2:17177102-17177121 Msa0241560:intron 40.0%
CCAAAAGACCAATAAGGCAT+AGG + chr2_2:17177220-17177239 None:intergenic 40.0%
!!! CCTATGCCTTATTGGTCTTT+TGG - chr2_2:17177217-17177236 Msa0241560:intron 40.0%
! GTCTTTTGGTAAGTCCAACA+TGG - chr2_2:17177231-17177250 Msa0241560:intron 40.0%
CAAGTGTTTATAGTCAGTCG+TGG - chr2_2:17177315-17177334 Msa0241560:intron 40.0%
GTTTATAGTCAGTCGTGGAT+CGG - chr2_2:17177320-17177339 Msa0241560:intron 40.0%
CTATCTCAGACGTTACAACA+AGG + chr2_2:17177415-17177434 None:intergenic 40.0%
! GTCTGAGATAGTGACCTTAT+TGG - chr2_2:17177424-17177443 Msa0241560:CDS 40.0%
CACTGATAAGATCACCTACT+CGG - chr2_2:17177520-17177539 Msa0241560:CDS 40.0%
! AAAGCACCAATGACATCTGA+CGG + chr2_2:17177564-17177583 None:intergenic 40.0%
! GGTGCTTTGAACAAATTCTC+AGG - chr2_2:17177576-17177595 Msa0241560:CDS 40.0%
!! AGGTGTTGAAAACTCAAGTG+TGG - chr2_2:17177784-17177803 Msa0241560:CDS 40.0%
TGTTGAAAACTCAAGTGTGG+AGG - chr2_2:17177787-17177806 Msa0241560:CDS 40.0%
AGCCCCTAATTAGTTAGGAA+TGG - chr2_2:17177813-17177832 Msa0241560:CDS 40.0%
GGCCATTCCTAACTAATTAG+GGG + chr2_2:17177818-17177837 None:intergenic 40.0%
! TGGTGTTAGATTTGAATGCC+TGG + chr2_2:17177924-17177943 None:intergenic 40.0%
GTAACCAACTATGCAAAAGC+TGG - chr2_2:17178088-17178107 Msa0241560:intron 40.0%
! TATGCCAGCTTTTGCATAGT+TGG + chr2_2:17178095-17178114 None:intergenic 40.0%
TCTGTCCACATAACTTCAAG+GGG + chr2_2:17178118-17178137 None:intergenic 40.0%
TATGTGCTTATCTTGGATCC+AGG - chr2_2:17178244-17178263 Msa0241560:intron 40.0%
! TGGTGTTAGAATTAGGTACC+TGG + chr2_2:17178265-17178284 None:intergenic 40.0%
CAATTAGTGCAATCCTAGTC+CGG - chr2_2:17178396-17178415 Msa0241560:CDS 40.0%
ACGTATGCAACCTATGTTAG+AGG - chr2_2:17178591-17178610 Msa0241560:intron 40.0%
AGCTTGCAAACCTCTAACAT+AGG + chr2_2:17178604-17178623 None:intergenic 40.0%
TCAGGATAGTAAACTTGTCC+AGG + chr2_2:17178675-17178694 None:intergenic 40.0%
!! TTCTCCCTTTTGATGGTCTT+TGG - chr2_2:17178754-17178773 Msa0241560:intron 40.0%
CAAGCCAAAGACCATCAAAA+GGG + chr2_2:17178761-17178780 None:intergenic 40.0%
TCAAGCCAAAGACCATCAAA+AGG + chr2_2:17178762-17178781 None:intergenic 40.0%
! TTTTGTAAGGAGGGTTGTCA+TGG + chr2_2:17178836-17178855 None:intergenic 40.0%
CAAAGCAACTAATCAGGCTT+TGG - chr2_2:17178971-17178990 Msa0241560:intron 40.0%
! TGGTGGATATAACCGGTAAA+AGG - chr2_2:17178991-17179010 Msa0241560:intron 40.0%
AAGTATACAGCTCATTGGAC+AGG - chr2_2:17179053-17179072 Msa0241560:intron 40.0%
!! TGGAATCTTTGGAGTTCCTA+TGG - chr2_2:17179133-17179152 Msa0241560:intron 40.0%
!! ATCTTTGGAGTTCCTATGGT+TGG - chr2_2:17179137-17179156 Msa0241560:intron 40.0%
TGTTTATGCGACTGCAATTG+CGG + chr2_2:17179395-17179414 None:intergenic 40.0%
ATCTCTTGCAAAGGGGTAAA+AGG + chr2_2:17179513-17179532 None:intergenic 40.0%
CTGAATGATCTCTTGCAAAG+GGG + chr2_2:17179520-17179539 None:intergenic 40.0%
TCGGGGAATGAAAAGAAAAG+TGG + chr2_2:17179689-17179708 None:intergenic 40.0%
! ACTTTTCTTTTCATTCCCCG+AGG - chr2_2:17179688-17179707 Msa0241560:CDS 40.0%
TTCGTATGTCGTGATATCCT+CGG + chr2_2:17179708-17179727 None:intergenic 40.0%
TCTGCACTCACTGAATTTGA+GGG + chr2_2:17179845-17179864 None:intergenic 40.0%
TTCTGCACTCACTGAATTTG+AGG + chr2_2:17179846-17179865 None:intergenic 40.0%
AATTCAGTGAGTGCAGAATC+AGG - chr2_2:17179848-17179867 Msa0241560:CDS 40.0%
ATAAATGTGCATGTTGGCGA+AGG - chr2_2:17179905-17179924 Msa0241560:CDS 40.0%
! TGTTGGCGAAGGTAACATTT+TGG - chr2_2:17179916-17179935 Msa0241560:CDS 40.0%
!!! GGTAACATTTTGGCCTTACA+AGG - chr2_2:17179926-17179945 Msa0241560:CDS 40.0%
TGTCATTGCTTCACCTTGTA+AGG + chr2_2:17179942-17179961 None:intergenic 40.0%
CAATGACAACAAAAGCAGCT+CGG - chr2_2:17179954-17179973 Msa0241560:CDS 40.0%
GAACACCTCATTCGAACTAT+TGG - chr2_2:17179976-17179995 Msa0241560:CDS 40.0%
TGGGGATACCTAATTATGGT+AGG - chr2_2:17180203-17180222 Msa0241560:intron 40.0%
! AGTGAGTTGAATGTTGTGAG+TGG - chr2_2:17180250-17180269 Msa0241560:CDS 40.0%
! CCCTTGTTTCACCTTAGTTA+AGG - chr2_2:17180474-17180493 Msa0241560:five_prime_UTR 40.0%
GGAGACAAGCTATGTTGAGT+AGG + chr2_2:17176056-17176075 None:intergenic 45.0%
CAGAAGGCTAGTAGTGATAG+TGG + chr2_2:17176184-17176203 None:intergenic 45.0%
AGGTTGAGAAGTGGAATGTC+GGG + chr2_2:17176367-17176386 None:intergenic 45.0%
GAGGTTGAGAAGTGGAATGT+CGG + chr2_2:17176368-17176387 None:intergenic 45.0%
TAGTTAGTTACCTGGCACTG+AGG + chr2_2:17176387-17176406 None:intergenic 45.0%
CTCCACAACACAACTCCATT+TGG - chr2_2:17176713-17176732 Msa0241560:CDS 45.0%
! CGGGTGATAGTGAAACCAAA+TGG + chr2_2:17176731-17176750 None:intergenic 45.0%
TCAGGGTTTAAAGGGTCTTC+TGG + chr2_2:17176788-17176807 None:intergenic 45.0%
!! AGCTCTTTTTGAAGGCAGAG+AGG + chr2_2:17176852-17176871 None:intergenic 45.0%
GTGAGAAAGGGTTCATCTGA+TGG - chr2_2:17177010-17177029 Msa0241560:CDS 45.0%
!! TGCTGGTTCATCTCCTGAAT+TGG - chr2_2:17177156-17177175 Msa0241560:intron 45.0%
TCTCAGACGTTACAACAAGG+AGG + chr2_2:17177412-17177431 None:intergenic 45.0%
AAGCACCAATGACATCTGAC+GGG + chr2_2:17177563-17177582 None:intergenic 45.0%
CAGTAGACCACCTTGATAGA+AGG + chr2_2:17177619-17177638 None:intergenic 45.0%
! GTGGTTTGCAACAACGGTTA+CGG + chr2_2:17177714-17177733 None:intergenic 45.0%
GGACAAGCCCCTAATTAGTT+AGG - chr2_2:17177808-17177827 Msa0241560:CDS 45.0%
TGTAAGTGATGTCGAAGGTG+TGG - chr2_2:17178066-17178085 Msa0241560:intron 45.0%
GCATACCCCTTGAAGTTATG+TGG - chr2_2:17178110-17178129 Msa0241560:intron 45.0%
GTAGTAGCAGAGCTACAACA+TGG - chr2_2:17178336-17178355 Msa0241560:intron 45.0%
TAGTATTGCAGGCACATTGC+CGG + chr2_2:17178418-17178437 None:intergenic 45.0%
TATCTAGGTGAAGTTTGGCC+TGG - chr2_2:17178654-17178673 Msa0241560:intron 45.0%
GGGTTGTCATGGTTTGAATG+TGG + chr2_2:17178825-17178844 None:intergenic 45.0%
! AGCAACTAATCAGGCTTTGG+TGG - chr2_2:17178974-17178993 Msa0241560:intron 45.0%
! CAGGCTTTGGTGGATATAAC+CGG - chr2_2:17178984-17179003 Msa0241560:intron 45.0%
CTGGCAAGTATACAGCTCAT+TGG - chr2_2:17179048-17179067 Msa0241560:intron 45.0%
CAGGAGATAATGCTGCTACA+TGG - chr2_2:17179072-17179091 Msa0241560:intron 45.0%
CATATATCCGCTCCAACCAT+AGG + chr2_2:17179152-17179171 None:intergenic 45.0%
ATGGTTGGAGCGGATATATG+CGG - chr2_2:17179152-17179171 Msa0241560:intron 45.0%
! GTGGATGCTATCCGATTTTG+AGG + chr2_2:17179240-17179259 None:intergenic 45.0%
AAAGGCCCCTAACTACATTC+AGG + chr2_2:17179495-17179514 None:intergenic 45.0%
AAGGTAAAGCTCTTGCCTGA+TGG + chr2_2:17179552-17179571 None:intergenic 45.0%
TCAGGCAAGAGCTTTACCTT+TGG - chr2_2:17179552-17179571 Msa0241560:CDS 45.0%
CAGGCAAGAGCTTTACCTTT+GGG - chr2_2:17179553-17179572 Msa0241560:CDS 45.0%
ATGCTGCAACTGAATCCCAA+AGG + chr2_2:17179571-17179590 None:intergenic 45.0%
TCGTATGTCGTGATATCCTC+GGG + chr2_2:17179707-17179726 None:intergenic 45.0%
AATGTCGGGTCCAAAAACCG+AGG + chr2_2:17176353-17176372 None:intergenic 50.0%
GACCAATAAGGCATAGGAGC+AGG + chr2_2:17177214-17177233 None:intergenic 50.0%
TGAGTCCCGTCAGATGTCAT+TGG - chr2_2:17177555-17177574 Msa0241560:CDS 50.0%
CCTTGATAGAAGGTCGACTG+TGG + chr2_2:17177609-17177628 None:intergenic 50.0%
CCACAGTCGACCTTCTATCA+AGG - chr2_2:17177606-17177625 Msa0241560:CDS 50.0%
CAGTCGACCTTCTATCAAGG+TGG - chr2_2:17177609-17177628 Msa0241560:CDS 50.0%
GTAGCAGAGCTACAACATGG+CGG - chr2_2:17178339-17178358 Msa0241560:CDS 50.0%
TGGAGTTCCTATGGTTGGAG+CGG - chr2_2:17179142-17179161 Msa0241560:intron 50.0%
TGGAAGAAGGCGGTAACGAA+GGG + chr2_2:17179612-17179631 None:intergenic 50.0%
ATGGAAGAAGGCGGTAACGA+AGG + chr2_2:17179613-17179632 None:intergenic 50.0%
CAAAAGGGACACCAATTGCG+CGG - chr2_2:17179663-17179682 Msa0241560:CDS 50.0%
AAGAAAAGTGGCCGCGCAAT+TGG + chr2_2:17179677-17179696 None:intergenic 50.0%
CGTATGTCGTGATATCCTCG+GGG + chr2_2:17179706-17179725 None:intergenic 50.0%
GTCTCACCTGTGCTACAATC+TGG - chr2_2:17179764-17179783 Msa0241560:CDS 50.0%
ACTGCACCAGATTGTAGCAC+AGG + chr2_2:17179773-17179792 None:intergenic 50.0%
GGTGAGGCTCTTGATCTAGA+AGG - chr2_2:17180049-17180068 Msa0241560:CDS 50.0%
! CTGGCACTGAGGTTGAGAAG+TGG + chr2_2:17176376-17176395 None:intergenic 55.0%
CACTTCTCAACCTCAGTGCC+AGG - chr2_2:17176374-17176393 Msa0241560:CDS 55.0%
GTGAAAAGTGGGGCCACACA+TGG - chr2_2:17177037-17177056 Msa0241560:CDS 55.0%
GGCCTGCTCCTATGCCTTAT+TGG - chr2_2:17177209-17177228 Msa0241560:intron 55.0%
TAAGATCACCTACTCGGCCG+TGG - chr2_2:17177526-17177545 Msa0241560:CDS 55.0%
AAGATCACCTACTCGGCCGT+GGG - chr2_2:17177527-17177546 Msa0241560:CDS 55.0%
CGGTTACGGCCACAACGTAA+GGG + chr2_2:17177700-17177719 None:intergenic 55.0%
ACGGTTACGGCCACAACGTA+AGG + chr2_2:17177701-17177720 None:intergenic 55.0%
CTGAAGAACTATGTCGGCGC+TGG - chr2_2:17179192-17179211 Msa0241560:intron 55.0%
! ACTATGTCGGCGCTGGATTC+AGG - chr2_2:17179199-17179218 Msa0241560:intron 55.0%
GTCGGGTCCAAAAACCGAGG+AGG + chr2_2:17176350-17176369 None:intergenic 60.0%
AGATCACCTACTCGGCCGTG+GGG - chr2_2:17177528-17177547 Msa0241560:CDS 60.0%
GACGGGACTCATCATCCCCA+CGG + chr2_2:17177546-17177565 None:intergenic 60.0%
TGCAGGCACATTGCCGGACT+AGG + chr2_2:17178412-17178431 None:intergenic 60.0%
CATCATCCCCACGGCCGAGT+AGG + chr2_2:17177537-17177556 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 17175978 17180626 17175978 ID=Msa0241560;Name=Msa0241560
chr2_2 mRNA 17175978 17180626 17175978 ID=Msa0241560-mRNA-1;Parent=Msa0241560;Name=Msa0241560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=167|1|1|1|0.8|0.66|6|198|912
chr2_2 exon 17175978 17176087 17175978 ID=Msa0241560-mRNA-1:exon:7061;Parent=Msa0241560-mRNA-1
chr2_2 exon 17176114 17177101 17176114 ID=Msa0241560-mRNA-1:exon:7060;Parent=Msa0241560-mRNA-1
chr2_2 exon 17177384 17178030 17177384 ID=Msa0241560-mRNA-1:exon:7059;Parent=Msa0241560-mRNA-1
chr2_2 exon 17178339 17178569 17178339 ID=Msa0241560-mRNA-1:exon:7058;Parent=Msa0241560-mRNA-1
chr2_2 exon 17179366 17180075 17179366 ID=Msa0241560-mRNA-1:exon:7057;Parent=Msa0241560-mRNA-1
chr2_2 exon 17180209 17180626 17180209 ID=Msa0241560-mRNA-1:exon:7056;Parent=Msa0241560-mRNA-1
chr2_2 five_prime_UTR 17180460 17180626 17180460 ID=Msa0241560-mRNA-1:five_prime_utr;Parent=Msa0241560-mRNA-1
chr2_2 CDS 17180209 17180459 17180209 ID=Msa0241560-mRNA-1:cds;Parent=Msa0241560-mRNA-1
chr2_2 CDS 17179366 17180075 17179366 ID=Msa0241560-mRNA-1:cds;Parent=Msa0241560-mRNA-1
chr2_2 CDS 17178339 17178569 17178339 ID=Msa0241560-mRNA-1:cds;Parent=Msa0241560-mRNA-1
chr2_2 CDS 17177384 17178030 17177384 ID=Msa0241560-mRNA-1:cds;Parent=Msa0241560-mRNA-1
chr2_2 CDS 17176202 17177101 17176202 ID=Msa0241560-mRNA-1:cds;Parent=Msa0241560-mRNA-1
chr2_2 three_prime_UTR 17176114 17176201 17176114 ID=Msa0241560-mRNA-1:three_prime_utr;Parent=Msa0241560-mRNA-1
chr2_2 three_prime_UTR 17175978 17176087 17175978 ID=Msa0241560-mRNA-1:three_prime_utr;Parent=Msa0241560-mRNA-1
Gene Sequence

>Msa0241560

ATGGTTACAAGTCCAATAACTAAAACCAGAAACATTCCACTATCACTACTAGCCTTCTGTCTCAATCTTTGTGTCATCTTATCACAAACTGTTGCAGATTCACCATCAAAAGAAACACAAACTGGTTATGGCTACACAATCATAAGTGTAAAAATTGATTCAACAGGAAAATCTTTGTCTGCTAGCCTAAAACTCATCAAATCCTCCTCGGTTTTTGGACCCGACATTCCACTTCTCAACCTCAGTGCCAGTTTTGAGACCAAGGATCAATTAAGAGTAAGAATCACTGATTCAAACAATCAAAGATGGGAAATTCCAGAAGAAGTGATTCCAAGAGTCTCATCATCTTCATCTCTATCTCATCATTTTCGCCACCAAAATTCGCAAAACTCAAAATACATAATTACACATCCAAACTCAGACCTTATCTTCACACTCCACAACACAACTCCATTTGGTTTCACTATCACCCGTAAATCCAACAAAGATATACTCTTTAACACTTTACCAGAAGACCCTTTAAACCCTGAAACATTTCTAGTCTTTAAGGAACAGTACTTGCAGCTTTCTTCCTCTCTGCCTTCAAAAAGAGCTTCTCTGTATGGTTTTGGAGAGCATACAAAGAGTTCATTCAAGTTGCAAGCAAACCAAACTTTCACTCTTTGGAATGAAGATATTGGTAGTTCCAATGTTGATGTGAATCTTTATGGCTCTCATCCATTTTATTTGGATGTGAGAAAGGGTTCATCTGATGGAAGAGTGAAAAGTGGGGCCACACATGGTGTTTTACTTCTTAATAGTAATGGAATGGATGTTGAATATAGCGGTGATCGTCTTACTTATAAGGTGATTGGTGGTGTTTTTGATTTGTATTTTTTTGCTGGTTCATCTCCTGAATTGGTTTTGGATCAGTATACTCAGTTCATTGGTAGGCCTGCTCCTATGCCTTATTGGTCTTTTGGTTTTCATCAATGTCGATATGGCTACAAGAATGTAAGTGATGTCGAAGGTGTGGTAACCAACTATGCAAAAGCTGGCATACCCCTTGAAGTTATGTGGACAGATATTGATTACATGGATGCATATAAAGATTTCACACTAGATCCTGTTAATTTTCCGCAAGATAAGATGATAAGTTTTGTTGATACCCTTCACAAAAATGGTCAGAAATATGTGCTTATCTTGGATCCAGGTATCAGTATAAATACTACGTATGCAACCTATGTTAGAGGTTTGCAAGCTGATGTATATATAAAGAGAAATGGAGTCAACTATCTAGGTGAAGTTTGGCCTGGACAAGTTTACTATCCTGATTTTCTTAATCCTAATAGTCAAGAATTTTGGGCTGAAGAAATCAAATTATTTAATGACATTCTCCCTTTTGATGGTCTTTGGCTTGACATGAATGAGTTATCTAATTTCATAACTTCAAATGACACTCCACATTCAAACCATGACAACCCTCCTTACAAAATTAACAGTTCTGGCGTTCAACGACCAATTAACGAGAAAACTGTTCCAGCAACATCTTTACATTATGGTAATATCACTGAGTATGATTCTCACAATTTGTATGGACTTTTAGAATGCAAAGCAACTAATCAGGCTTTGGTGGATATAACCGGTAAAAGGCCATTCATTTTGAGTAGATCAACTTTTGTTAGCTCTGGCAAGTATACAGCTCATTGGACAGGAGATAATGCTGCTACATGGAATGATTTAGCATACTCAATCCCTTCAATATTGAACTTTGGAATCTTTGGAGTTCCTATGGTTGGAGCGGATATATGCGGCTTCTCAGCAGACACTACTGAAGAACTATGTCGGCGCTGGATTCAGTTAGGGGCCTTTTACCCCTTTGCAAGAGATCATTCAGATAAAAATTCCATCAGGCAAGAGCTTTACCTTTGGGATTCAGTTGCAGCATCAGCTCGAAAAGTGCTTGCCCTTCGTTACCGCCTTCTTCCATATTTCTACACACTAATGTACGAATCAAACACAAAAGGGACACCAATTGCGCGGCCACTTTTCTTTTCATTCCCCGAGGATATCACGACATACGAAATAAACTCACAGTTTCTATTAGGCAAAGGTGTTCTAGTCTCACCTGTGCTACAATCTGGTGCAGTTACTGTTGATGCATACTTTCCTAAAGGAAATTGGTTTGATCTCTTTAATCCCTCAAATTCAGTGAGTGCAGAATCAGGCAAATATGTCACACTTGATGCACCATCTGATCACATAAATGTGCATGTTGGCGAAGGTAACATTTTGGCCTTACAAGGTGAAGCAATGACAACAAAAGCAGCTCGGAACACCTCATTCGAACTATTGGTTGTTTTTAGTGGAAATGGAAATAGTTATGGACAAGTTTATTTGGATGATGGTGAGGCTCTTGATCTAGAAGGAGAGAAAGATCAATGGACACTTGTGAGATTTTATGGTGCACTGTATAATGATAGTGTTTCTGTTACTTCTAATGTTACTAATGGAAAATTTGCTTTGGACCAAAAATGGATCATAGAAAAGGTCACATTCTTGGGGATACCTAATTATGGTAGGTTAAATGGAAATGATTTGGCTGAGAGTGAGTTGAATGTTGTGAGTGGAATGAATTCAATGAGGAAAAGAGTTTTGATCACAAAATTTGATAGGTCTTCTAAGTTTGTTACTGTAGAAGTTTCAAATTTGAAACAGCTTATTGGAGAGCAGTTTGAACTGAAGACTAAAATAAGGTAG
Protein sequence

>Msa0241560

MVTSPITKTRNIPLSLLAFCLNLCVILSQTVADSPSKETQTGYGYTIISVKIDSTGKSLSASLKLIKSSSVFGPDIPLLNLSASFETKDQLRVRITDSNNQRWEIPEEVIPRVSSSSSLSHHFRHQNSQNSKYIITHPNSDLIFTLHNTTPFGFTITRKSNKDILFNTLPEDPLNPETFLVFKEQYLQLSSSLPSKRASLYGFGEHTKSSFKLQANQTFTLWNEDIGSSNVDVNLYGSHPFYLDVRKGSSDGRVKSGATHGVLLLNSNGMDVEYSGDRLTYKVIGGVFDLYFFAGSSPELVLDQYTQFIGRPAPMPYWSFGFHQCRYGYKNVSDVEGVVTNYAKAGIPLEVMWTDIDYMDAYKDFTLDPVNFPQDKMISFVDTLHKNGQKYVLILDPGISINTTYATYVRGLQADVYIKRNGVNYLGEVWPGQVYYPDFLNPNSQEFWAEEIKLFNDILPFDGLWLDMNELSNFITSNDTPHSNHDNPPYKINSSGVQRPINEKTVPATSLHYGNITEYDSHNLYGLLECKATNQALVDITGKRPFILSRSTFVSSGKYTAHWTGDNAATWNDLAYSIPSILNFGIFGVPMVGADICGFSADTTEELCRRWIQLGAFYPFARDHSDKNSIRQELYLWDSVAASARKVLALRYRLLPYFYTLMYESNTKGTPIARPLFFSFPEDITTYEINSQFLLGKGVLVSPVLQSGAVTVDAYFPKGNWFDLFNPSNSVSAESGKYVTLDAPSDHINVHVGEGNILALQGEAMTTKAARNTSFELLVVFSGNGNSYGQVYLDDGEALDLEGEKDQWTLVRFYGALYNDSVSVTSNVTNGKFALDQKWIIEKVTFLGIPNYGRLNGNDLAESELNVVSGMNSMRKRVLITKFDRSSKFVTVEVSNLKQLIGEQFELKTKIR*